Citrus Sinensis ID: 018808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | 2.2.26 [Sep-21-2011] | |||||||
| O80763 | 578 | Probable nucleoredoxin 1 | yes | no | 0.997 | 0.603 | 0.674 | 1e-139 | |
| Q7Y0F2 | 581 | Probable nucleoredoxin 1- | yes | no | 0.962 | 0.580 | 0.583 | 1e-113 | |
| Q7Y0E8 | 569 | Probable nucleoredoxin 1- | no | no | 0.985 | 0.606 | 0.572 | 1e-111 | |
| Q0JIL1 | 394 | Probable nucleoredoxin 2 | no | no | 0.928 | 0.824 | 0.410 | 2e-66 | |
| Q7XPE8 | 471 | Probable nucleoredoxin 3 | no | no | 0.868 | 0.645 | 0.389 | 3e-61 | |
| Q8VZQ0 | 392 | Probable nucleoredoxin 3 | no | no | 0.88 | 0.785 | 0.399 | 5e-60 | |
| Q503L9 | 418 | Nucleoredoxin OS=Danio re | yes | no | 0.731 | 0.612 | 0.311 | 2e-33 | |
| P97346 | 435 | Nucleoredoxin OS=Mus musc | yes | no | 0.794 | 0.639 | 0.298 | 3e-33 | |
| A6QLU8 | 435 | Nucleoredoxin OS=Bos taur | yes | no | 0.788 | 0.634 | 0.294 | 4e-33 | |
| Q6DKJ4 | 435 | Nucleoredoxin OS=Homo sap | yes | no | 0.802 | 0.645 | 0.293 | 5e-33 |
| >sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/350 (67%), Positives = 296/350 (84%), Gaps = 1/350 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L
Sbjct: 7 QVNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLV 66
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
EVYNELS + FE++FVSGDED+E+F YF KMPWLAVPF+DSETRD+LDELFKV GIP+
Sbjct: 67 EVYNELSSKVGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPN 126
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+R Q+LRSVL + SRD
Sbjct: 127 LVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRD 186
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
FVIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL
Sbjct: 187 FVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISL 246
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGKT HSNVAEAI+
Sbjct: 247 EDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAID 306
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
++GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV
Sbjct: 307 DYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKV 356
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Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/343 (58%), Positives = 258/343 (75%), Gaps = 6/343 (1%)
Query: 14 LLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-D 71
L S+ RDFL+R++ D+VK+ S+K + LYFSASWC PC+RFTP L E YNEL QG
Sbjct: 17 LASADGRDFLLRNSADKVKISSIKASTVALYFSASWCPPCRRFTPKLIEAYNELVSQGKS 76
Query: 72 FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKV 130
FEV+FVSGD D +AF YF+KMPWLAVPFSDSE KL+E +KVMGIPHLVILD ++G++
Sbjct: 77 FEVVFVSGDSDQDAFNAYFAKMPWLAVPFSDSEALAKLNERYKVMGIPHLVILDAKSGEI 136
Query: 131 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190
++ GVE++ EYG E YPFT ERI E+KEQE+ AK Q++ S+ + +RD++I++ G K+
Sbjct: 137 YTEDGVELVHEYGTEAYPFTTERINELKEQEKAAKDNQTIHSLFGTPTRDYLITNKGDKV 196
Query: 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250
+SDLEGK +GL F ++ Y +FT L ++YEKLK GE FE+V++SLD +EESF
Sbjct: 197 PISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEESFNES 256
Query: 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA---F 307
MPWLA+P DK EKLARYFELS LP LV+IGPDGKTL+ ++A+ I+EHG A F
Sbjct: 257 FADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIGPDGKTLNDDIADIIDEHGPDAWEGF 316
Query: 308 PFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
PF+ EK LAE +AK ESQTLES+LV+GDLDFV+GK+G KV
Sbjct: 317 PFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKDGAKV 359
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/351 (57%), Positives = 262/351 (74%), Gaps = 6/351 (1%)
Query: 6 ANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYN 64
A++ I ++L++ RDFL+R++ DQVK+ S++ + LYFSASWC PC+RFTP L E YN
Sbjct: 2 ADAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYN 61
Query: 65 ELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVI 123
EL QG +FEV+FVSGD+D EAF YF+KMPWLAVPFSDSE R KL++ FKV GIPHLVI
Sbjct: 62 ELVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVI 121
Query: 124 LDE-NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
L+ +G+V ++ GVE++ +G E YPFT ERI E+KEQE+ AK Q+++SVL + +RD++
Sbjct: 122 LNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYL 181
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
+S+ G ++ +SDLEGK +GL F ++ Y +FT L + YEKLK GE FE+V +SLD
Sbjct: 182 LSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLDS 241
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EE MPWLA+P +DK EKLARYFEL LPTLV+IGPDGKTL++NVA+ I+EH
Sbjct: 242 DEELSNESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEH 301
Query: 303 GVGA---FPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
G A FPFT EK LAE +AK E QTLES+LV GDLDFV+GK+G KV
Sbjct: 302 GQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKDGAKV 352
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 194/331 (58%), Gaps = 6/331 (1%)
Query: 23 LIRSNGDQVKLDSLKGKI-GLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80
LI G++V++ L+GKI GLYF+A+W C+ FTP L Y++L G FEVIFVS D
Sbjct: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIR 140
E+ +F+ + MPW AVPF D + +L E F+V GIP LV+L NG+V+ VE++
Sbjct: 86 ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVH 145
Query: 141 EYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTI 200
YG +PFT R+ E++ E+R Q+L + + +D+V S ++ +S L GKT+
Sbjct: 146 RYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGSQ-EQVPISSLVGKTV 204
Query: 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALP 260
GLYFS +FT +L +Y LKGK E FEI+ I +D EE+ + R MPWLALP
Sbjct: 205 GLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEIIYIPMDKEEDGYLRSCSDMPWLALP 264
Query: 261 FKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 319
+ D S LARYF++ +PTLV++GPDGKT+ + + AFPFT E+ L E
Sbjct: 265 YDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQIRLLQE 324
Query: 320 I--QRAKEESQTLESVLVSGDLDFVVGKNGG 348
+ + AK +L +L V K+GG
Sbjct: 325 MEDEDAKGYPPSLRHTGHRHELSIVSDKSGG 355
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 191/311 (61%), Gaps = 7/311 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80
L+ + G ++ L S++GK I L+FSA WC PC+ FTP L ++Y +L + E+IF+S D
Sbjct: 26 LLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNTCKNMEIIFISLD 85
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD---ENGKVLSDGGVE 137
D+ +F YF MPWLA+PF D+ R KL F + IP L+ L +G + + V+
Sbjct: 86 RDEISFLDYFKGMPWLALPF-DTGLRQKLCVQFDIEHIPALIPLSTTLSHGFRVEEDAVK 144
Query: 138 IIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEG 197
++ EYGV+ YPF +R E++ ++ ++ +L +L R++VIS+DG K +SDL G
Sbjct: 145 LVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISDLNG 204
Query: 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKRDLGSMPW 256
KTIGLYF FT +L E Y++LK + +F+++ IS+D EE F+ L +MPW
Sbjct: 205 KTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEFQASLSAMPW 264
Query: 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAE 316
A+P+ D + ++L+R F + +PTL+I+GPDGK ++ I ++G AFPFT + E
Sbjct: 265 FAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRAYE 324
Query: 317 LAEIQRAKEES 327
L E+ + + +S
Sbjct: 325 LEEVLKKERDS 335
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 195/313 (62%), Gaps = 5/313 (1%)
Query: 8 SHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL 66
S D+ S+L++ +FL+ +G +V L+ + GK I L+FSA WC PC+ FTP L ++Y L
Sbjct: 14 SGDLYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENL 72
Query: 67 SRQGD-FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD 125
+G+ E+IFVS D D +F +F MPWLAVPF+ S +KL + + + IP LV L
Sbjct: 73 QNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLS-LLNKLRDKYGISRIPSLVPLY 131
Query: 126 ENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISS 185
+ +++ + +I +YG E +PFT +R +E+K ++ + L +LT SR++V++
Sbjct: 132 SDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVAR 191
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE-SFEIVLISLDDEE 244
+G K+ VS L GKTIGLYF FT +LV+VY +L + SFE++LIS D +
Sbjct: 192 NGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDS 251
Query: 245 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 304
F ++ +MPWLA+P++D++R+ L R F + +P LVIIGP+ KT+ +N E + +G
Sbjct: 252 REFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGS 311
Query: 305 GAFPFTPEKFAEL 317
+FPFT + EL
Sbjct: 312 RSFPFTESRIVEL 324
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 145/286 (50%), Gaps = 30/286 (10%)
Query: 43 YFSASWCGPCQRFTPILAEVYNELSRQGD----FEVIFVSGDEDDEAFKGYFSKMPWLAV 98
YF S GPC++F L E Y++ + + E++F+S D+D + ++ + +M W A+
Sbjct: 36 YFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPAL 95
Query: 99 PFSDSETRDKLDELFKVMGIPHLVILDE-NGKVLSDGGVEIIRE--YGVEGYPFTVERIK 155
PF D + KL +KV IP LV +D GKV+ G+ ++R+ G+E +P+ +
Sbjct: 96 PFKDRHKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLE-FPWGPKPFA 154
Query: 156 EMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEF 215
E+ + L ++R S+ LEG +G+YFS
Sbjct: 155 EV------------VSGPLLRNNRQTTDSTA--------LEGSYVGVYFSAHWCPPCRSL 194
Query: 216 TPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFE 274
T LVE Y K+K G+ FEIV +S D EESF + MPWLA+P+ D++R +L R +
Sbjct: 195 TRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYG 254
Query: 275 LSTLPTLVIIGPDGKTL-HSNVAEAIEEHGVGAFPFTPEKFAELAE 319
+ +PTL+++ +G + E + + G FP+ P EL+E
Sbjct: 255 IQGIPTLILLDTEGHMITRQGRVEILNDPDCGLFPWHPRPVLELSE 300
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Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 158/328 (48%), Gaps = 50/328 (15%)
Query: 21 DFLIRSNGDQVKLDSLKGK----IGLYFSASWCGPCQRFTPILAEVYNELSRQGD----- 71
D L+ G++V + SL + +GLYF S PC + + LA Y L +GD
Sbjct: 11 DKLVTGGGEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRL--RGDAAAGP 68
Query: 72 -----------------FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114
E++FVS D+D ++ + MPWLA+P+ + + KL ++
Sbjct: 69 GAGAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYR 128
Query: 115 VMGIPHLVILDEN-GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSV 173
V IP L+ LD GKV+ G+ +IR+ EG F + R V
Sbjct: 129 VSNIPSLIFLDATTGKVVCRNGLLVIRD-DPEGLEFPWG--------------PKPFREV 173
Query: 174 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESF 233
+ ++ ++G+ + S LEG +G+YFS T LVE Y K+K G+ F
Sbjct: 174 IAGP----LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEF 229
Query: 234 EIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTL- 291
EI+ +S D EESFK+ MPWLA+P+ D++R +L R + + +PTL+++ P G+ +
Sbjct: 230 EIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVIT 289
Query: 292 HSNVAEAIEEHGVGAFPFTPEKFAELAE 319
E + + FP+ P+ EL++
Sbjct: 290 RQGRVEVLNDEDCREFPWHPKPVLELSD 317
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Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 158/326 (48%), Gaps = 50/326 (15%)
Query: 23 LIRSNGDQVKLDSLKGK----IGLYFSASWCGPCQRFTPILAEVYNELSRQGD------- 71
L+ G++V + SL + +GLYF S PC + + LA Y L +GD
Sbjct: 13 LVTGGGEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRL--RGDAAAGPGP 70
Query: 72 ---------------FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116
E++FVS D+D ++ + MPWLA+P+ + + KL +++
Sbjct: 71 GPGAGASAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRIS 130
Query: 117 GIPHLVILDE-NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLT 175
IP L+ LD +GKV+ G+ +IR+ EG F + R V+
Sbjct: 131 NIPSLIFLDATSGKVVCRNGLLVIRD-DPEGLEFPWG--------------PKPFREVIA 175
Query: 176 SHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
++ S+G+ + S LEG +G+YFS T LVE Y K+K G+ FEI
Sbjct: 176 GP----LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEI 231
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTL-HS 293
+ +S D E+SFK+ MPWLA+P+ D++R +L R + + +PTL+++ P G+ +
Sbjct: 232 IFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQ 291
Query: 294 NVAEAIEEHGVGAFPFTPEKFAELAE 319
E + + FP+ P+ EL++
Sbjct: 292 GRVEVLNDEDCRGFPWHPKPVLELSD 317
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 160/331 (48%), Gaps = 50/331 (15%)
Query: 23 LIRSNGDQVKLDSLKGK----IGLYFSASWCGPCQRFTPILAEVYNELSRQGD------- 71
L+ G++V + SL + +GLYF S PC + + LA Y L +GD
Sbjct: 13 LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRL--RGDAAAGPGP 70
Query: 72 ---------------FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116
E++FVS D+D ++ + MPWLA+P+ + + KL +++
Sbjct: 71 GAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRIS 130
Query: 117 GIPHLVILDEN-GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLT 175
IP L+ LD GKV+ G+ +IR+ EG F + R V+
Sbjct: 131 NIPSLIFLDATTGKVVCRNGLLVIRD-DPEGLEFPWG--------------PKPFREVIA 175
Query: 176 SHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
++ ++G+ + S LEG +G+YFS T LVE Y K+K G++FEI
Sbjct: 176 GP----LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEI 231
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTL-HS 293
+ +S D EESFK+ MPWLA+P+ D++R +L R + + +PTL+++ P G+ +
Sbjct: 232 IFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQ 291
Query: 294 NVAEAIEEHGVGAFPFTPEKFAELAEIQRAK 324
E + + FP+ P+ EL++ A+
Sbjct: 292 GRVEVLNDEDCREFPWHPKPVLELSDSNAAQ 322
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| 255568796 | 575 | nucleoredoxin, putative [Ricinus communi | 0.994 | 0.605 | 0.722 | 1e-150 | |
| 356526803 | 570 | PREDICTED: probable nucleoredoxin 1-like | 0.98 | 0.601 | 0.712 | 1e-146 | |
| 297739052 | 490 | unnamed protein product [Vitis vinifera] | 0.994 | 0.710 | 0.742 | 1e-146 | |
| 359473194 | 733 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.994 | 0.474 | 0.742 | 1e-146 | |
| 147799889 | 572 | hypothetical protein VITISV_008818 [Viti | 0.994 | 0.608 | 0.742 | 1e-146 | |
| 147792238 | 570 | hypothetical protein VITISV_043885 [Viti | 0.991 | 0.608 | 0.718 | 1e-146 | |
| 297739046 | 617 | unnamed protein product [Vitis vinifera] | 0.991 | 0.562 | 0.718 | 1e-146 | |
| 359473224 | 570 | PREDICTED: probable nucleoredoxin 1-like | 0.991 | 0.608 | 0.718 | 1e-145 | |
| 297840523 | 578 | DC1 domain-containing protein [Arabidops | 0.994 | 0.602 | 0.679 | 1e-139 | |
| 21592996 | 578 | PDI-like protein [Arabidopsis thaliana] | 0.997 | 0.603 | 0.677 | 1e-138 |
| >gi|255568796|ref|XP_002525369.1| nucleoredoxin, putative [Ricinus communis] gi|223535332|gb|EEF37007.1| nucleoredoxin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/349 (72%), Positives = 303/349 (86%), Gaps = 1/349 (0%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
M + HD SLLSSS RD+LIR+NGDQV++DSLKGK +GLYFSASWCGPCQRFTP L E
Sbjct: 4 MVNGDYHDFVSLLSSSDRDYLIRNNGDQVEIDSLKGKKLGLYFSASWCGPCQRFTPTLVE 63
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNEL+ +GDFE++F++ DEDDE+F+ YFSKMPWLA+PFSDS+ RD+LDE+FKV GIPH
Sbjct: 64 VYNELAPKGDFEIVFITADEDDESFEEYFSKMPWLAIPFSDSDKRDRLDEIFKVQGIPHF 123
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
VILDENGKV S+ GVEII+EYGV+ YPFT ERIK +K QEE A+R QSLRS+L SRD+
Sbjct: 124 VILDENGKVSSESGVEIIQEYGVQCYPFTAERIKVLKGQEEEARRNQSLRSILVFGSRDY 183
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VI+SDG+K+SVS+LEGKT+GLYFS+SSY + +FT L EVYEKLK KGE+FEIV ISLD
Sbjct: 184 VIASDGKKVSVSELEGKTVGLYFSLSSYTSCVDFTSTLAEVYEKLKAKGENFEIVFISLD 243
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
DEEE+F++ L +MPWLA PF DK EKL RYFELST+PTLV+IGPDGKTLHSNVAEAIEE
Sbjct: 244 DEEETFQQSLANMPWLAFPFNDKGCEKLVRYFELSTVPTLVVIGPDGKTLHSNVAEAIEE 303
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
HGV A+PFTPEKFAELAE+++A+E +QTLESVLVSGD +FV+G++G K+
Sbjct: 304 HGVQAYPFTPEKFAELAEMEKAREAAQTLESVLVSGDQNFVIGRDGAKI 352
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526803|ref|XP_003532006.1| PREDICTED: probable nucleoredoxin 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/344 (71%), Positives = 301/344 (87%), Gaps = 1/344 (0%)
Query: 8 SHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL 66
+HD+ SLLSS RDFL+R+NGDQVK+DSLKGK +GLYFSASWCGPCQ FTP L +VYNE+
Sbjct: 8 THDVVSLLSSPQRDFLLRNNGDQVKIDSLKGKKLGLYFSASWCGPCQTFTPTLVDVYNEV 67
Query: 67 SRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126
+++GDF+++F++ DEDDE+F GYFSKMPWLA+PFSDS+TR +LDELF V GIPHL +LDE
Sbjct: 68 AKKGDFQIVFITADEDDESFNGYFSKMPWLAIPFSDSDTRSRLDELFHVRGIPHLALLDE 127
Query: 127 NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSD 186
G V+++ GV++IREYGVEGYPFT RI+E+++QEE A+R QS+RS+L S SRDFVISSD
Sbjct: 128 AGNVVTEDGVDVIREYGVEGYPFTSARIQELRDQEEEARRNQSVRSLLVSPSRDFVISSD 187
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246
G+K VS+LEGKT+GLYF + S+ + ++FTP+LVEVYEKLK +GE+FE+VLI LDD+EES
Sbjct: 188 GKKTLVSELEGKTVGLYFCVKSFGSCSDFTPKLVEVYEKLKAQGENFEVVLIPLDDDEES 247
Query: 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA 306
FK L S+PWL+LPFKDK KLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE+HGV A
Sbjct: 248 FKELLESVPWLSLPFKDKICGKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEDHGVAA 307
Query: 307 FPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
+PFTPEKFAEL EI +AKE +QTLES+LVS D DFV+GK+G K+
Sbjct: 308 YPFTPEKFAELDEILKAKEAAQTLESILVSDDQDFVIGKDGVKI 351
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739052|emb|CBI28541.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/350 (74%), Positives = 311/350 (88%), Gaps = 2/350 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
N++G +HD+ SLL+ RDFL+R+NG QVK++SLKGK I LYFSASWCGPC+RFTP L
Sbjct: 5 NVDGV-AHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRRFTPKLV 63
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E YNELS DFE+IFVSGD DDE+F GYFSKMPWLA+PFSDS+ RD+L+ELFKVMGIP+
Sbjct: 64 EAYNELSSNDDFEIIFVSGDNDDESFNGYFSKMPWLAIPFSDSDARDQLNELFKVMGIPN 123
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV+LDE+GKVLS+ GV+II+EYGVE YPFT E+IKEMKE+EE A++EQSLRS+L S SRD
Sbjct: 124 LVMLDESGKVLSEDGVDIIQEYGVEAYPFTPEKIKEMKEKEETARKEQSLRSILVSQSRD 183
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
+VIS+DG+K+ VS+LEGK +GL+FS+SSYKA EFTP LV+VYEKL+ KGESFEIV+ISL
Sbjct: 184 YVISTDGKKVPVSELEGKFVGLFFSLSSYKACLEFTPTLVDVYEKLRAKGESFEIVMISL 243
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
DDEEESFK+ GSMPWLALPF+DKS EKLARYFELS LPTLV+IGPDGKTLHSNVAEAI+
Sbjct: 244 DDEEESFKKYFGSMPWLALPFRDKSCEKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQ 303
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
EHG+ A+PFTPEKFAEL EI++AK E+QTLES+LVSGD DFV+GK+G K+
Sbjct: 304 EHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGDRDFVIGKDGVKI 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473194|ref|XP_003631263.1| PREDICTED: LOW QUALITY PROTEIN: probable nucleoredoxin 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/350 (74%), Positives = 311/350 (88%), Gaps = 2/350 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
N++G +HD+ SLL+ RDFL+R+NG QVK++SLKGK I LYFSASWCGPC+RFTP L
Sbjct: 5 NVDGV-AHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRRFTPKLV 63
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E YNELS DFE+IFVSGD DDE+F GYFSKMPWLA+PFSDS+ RD+L+ELFKVMGIP+
Sbjct: 64 EAYNELSSNDDFEIIFVSGDNDDESFNGYFSKMPWLAIPFSDSDARDQLNELFKVMGIPN 123
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV+LDE+GKVLS+ GV+II+EYGVE YPFT E+IKEMKE+EE A++EQSLRS+L S SRD
Sbjct: 124 LVMLDESGKVLSEDGVDIIQEYGVEAYPFTPEKIKEMKEKEETARKEQSLRSILVSQSRD 183
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
+VIS+DG+K+ VS+LEGK +GL+FS+SSYKA EFTP LV+VYEKL+ KGESFEIV+ISL
Sbjct: 184 YVISTDGKKVPVSELEGKFVGLFFSLSSYKACLEFTPTLVDVYEKLRAKGESFEIVMISL 243
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
DDEEESFK+ GSMPWLALPF+DKS EKLARYFELS LPTLV+IGPDGKTLHSNVAEAI+
Sbjct: 244 DDEEESFKKYFGSMPWLALPFRDKSCEKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQ 303
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
EHG+ A+PFTPEKFAEL EI++AK E+QTLES+LVSGD DFV+GK+G K+
Sbjct: 304 EHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGDRDFVIGKDGVKI 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799889|emb|CAN77321.1| hypothetical protein VITISV_008818 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/350 (74%), Positives = 311/350 (88%), Gaps = 2/350 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
N++G +HD+ SLL+ RDFL+R+NG QVK++SLKGK I LYFSASWCGPC+RFTP L
Sbjct: 5 NVDGV-AHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRRFTPKLV 63
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E YNELS DFE+IFVSGD DDE+F GYFSKMPWLA+PFSDS+ RD+L+ELFKVMGIP+
Sbjct: 64 EAYNELSSNDDFEIIFVSGDNDDESFNGYFSKMPWLAIPFSDSDARDQLNELFKVMGIPN 123
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV+LDE+GKVLS+ GV+II+EYGVE YPFT E+IKEMKE+EE A++EQSLRS+L S SRD
Sbjct: 124 LVMLDESGKVLSEDGVDIIQEYGVEAYPFTPEKIKEMKEKEETARKEQSLRSILVSQSRD 183
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
+VIS+DG+K+ VS+LEGK +GL+FS+SSYKA EFTP LV+VYEKL+ KGESFEIV+ISL
Sbjct: 184 YVISTDGKKVPVSELEGKFVGLFFSLSSYKACLEFTPTLVDVYEKLRAKGESFEIVMISL 243
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
DDEEESFK+ GSMPWLALPF+DKS EKLARYFELS LPTLV+IGPDGKTLHSNVAEAI+
Sbjct: 244 DDEEESFKKYFGSMPWLALPFRDKSCEKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQ 303
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
EHG+ A+PFTPEKFAEL EI++AK E+QTLES+LVSGD DFV+GK+G K+
Sbjct: 304 EHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGDRDFVIGKDGVKI 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792238|emb|CAN59927.1| hypothetical protein VITISV_043885 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 300/348 (86%), Gaps = 1/348 (0%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV 62
+G+ HD+ S+LSS RD+LIR+NG+QVK+ SL+GK IGLYFSASWCGPC+RFTP L EV
Sbjct: 5 DGSAVHDVVSVLSSPNRDYLIRNNGNQVKITSLRGKKIGLYFSASWCGPCRRFTPELVEV 64
Query: 63 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122
YN LS +GDFE+ FVS DEDDE FK YFS+MPWLA+PFSDS+TRD LDELF+V GIPH+V
Sbjct: 65 YNGLSLKGDFEITFVSADEDDEMFKEYFSEMPWLAIPFSDSDTRDHLDELFRVSGIPHIV 124
Query: 123 ILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
I+ ENGKVL+D GVEIIREYGVEG+PFT ERIKE+KEQEE AKREQSLRS+L S SRDFV
Sbjct: 125 IIGENGKVLTDSGVEIIREYGVEGFPFTSERIKELKEQEEVAKREQSLRSILVSDSRDFV 184
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
IS++G K+ +S LEG+ +GLYFS+SSYK +FT +LV+VY K+K GESFEIVLIS DD
Sbjct: 185 ISANGMKVPISKLEGRLVGLYFSLSSYKLCVDFTSKLVDVYAKVKAMGESFEIVLISFDD 244
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EESF GSMPW ALPFKD+S KLARYFELST+PTLV+IGPDGKTLHSNV EAIEE+
Sbjct: 245 DEESFNEGXGSMPWFALPFKDESCRKLARYFELSTVPTLVMIGPDGKTLHSNVVEAIEEY 304
Query: 303 GVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
G+ A+PFTP KFAEL EI++AK+E+QTLES+LVSG+ D+++GK+G KV
Sbjct: 305 GIQAYPFTPAKFAELEEIEKAKQEAQTLESILVSGNRDYLIGKHGVKV 352
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739046|emb|CBI28535.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 299/348 (85%), Gaps = 1/348 (0%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV 62
+G+ HD+ S+LSS RD+LIR+NG+QVK+ SL+GK IGLYFSASWCGPC+RFTP L EV
Sbjct: 83 DGSAVHDVVSVLSSPNRDYLIRNNGNQVKITSLRGKKIGLYFSASWCGPCRRFTPELVEV 142
Query: 63 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122
YN LS +GDFE+ FVS DEDDE FK YFS+MPWLA+PFSDS+TRD LDELF+V GIPHLV
Sbjct: 143 YNGLSLKGDFEITFVSADEDDEMFKEYFSEMPWLAIPFSDSDTRDHLDELFRVSGIPHLV 202
Query: 123 ILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
I+ ENGKVL+D GVEIIREYGVEG+PFT ERIKE+KEQEE AKREQSLRS+L S SRDFV
Sbjct: 203 IIGENGKVLTDSGVEIIREYGVEGFPFTSERIKELKEQEEVAKREQSLRSILVSDSRDFV 262
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
IS++G K+ +S LEG+ +GLYFS+SSYK +FT +LV+VY K+K GESFEIVLIS DD
Sbjct: 263 ISANGMKVPISKLEGRLVGLYFSLSSYKLCVDFTSKLVDVYAKVKAMGESFEIVLISFDD 322
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EESF GSMP ALPFKD+S KLARYFELST+PTLV+IGPDGKTLHSNV EAIEE+
Sbjct: 323 DEESFNEGFGSMPCFALPFKDESCRKLARYFELSTVPTLVMIGPDGKTLHSNVVEAIEEY 382
Query: 303 GVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
G+ A+PFTP KFAEL EI++AK+E+QTLES+LVSG+ D+++GK+G KV
Sbjct: 383 GIQAYPFTPAKFAELEEIEKAKQEAQTLESILVSGNRDYLIGKHGVKV 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473224|ref|XP_003631272.1| PREDICTED: probable nucleoredoxin 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 299/348 (85%), Gaps = 1/348 (0%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV 62
+G+ HD+ S+LSS RD+LIR+NG+QVK+ SL+GK IGLYFSASWCGPC+RFTP L EV
Sbjct: 5 DGSAVHDVVSVLSSPNRDYLIRNNGNQVKITSLRGKKIGLYFSASWCGPCRRFTPELVEV 64
Query: 63 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122
YN LS +GDFE+ FVS DEDDE FK YFS+MPWLA+PFSDS+TRD LDELF+V GIPHLV
Sbjct: 65 YNGLSLKGDFEITFVSADEDDEMFKEYFSEMPWLAIPFSDSDTRDHLDELFRVSGIPHLV 124
Query: 123 ILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
I+ ENGKVL+D GVEIIREYGVEG+PFT ERIKE+KEQEE AKREQSLRS+L S SRDFV
Sbjct: 125 IIGENGKVLTDSGVEIIREYGVEGFPFTSERIKELKEQEEVAKREQSLRSILVSDSRDFV 184
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
IS++G K+ +S LEG+ +GLYFS+SSYK +FT +LV+VY K+K GESFEIVLIS DD
Sbjct: 185 ISANGMKVPISKLEGRLVGLYFSLSSYKLCVDFTSKLVDVYAKVKAMGESFEIVLISFDD 244
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EESF GSMP ALPFKD+S KLARYFELST+PTLV+IGPDGKTLHSNV EAIEE+
Sbjct: 245 DEESFNEGFGSMPCFALPFKDESCRKLARYFELSTVPTLVMIGPDGKTLHSNVVEAIEEY 304
Query: 303 GVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
G+ A+PFTP KFAEL EI++AK+E+QTLES+LVSG+ D+++GK+G KV
Sbjct: 305 GIQAYPFTPAKFAELEEIEKAKQEAQTLESILVSGNRDYLIGKHGVKV 352
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840523|ref|XP_002888143.1| DC1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333984|gb|EFH64402.1| DC1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/349 (67%), Positives = 300/349 (85%), Gaps = 1/349 (0%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
+NG+++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L E
Sbjct: 8 VNGSDALDLHSLLSSPARDFLVRNDGEQVKIDSLIGKKIGLYFSAAWCGPCQRFTPQLVE 67
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNELS + FE++FVSGDED+E+F YFSKMPWLAVPF+DSETRD+LDELFKV GIP+L
Sbjct: 68 VYNELSSKVGFEIVFVSGDEDEESFGDYFSKMPWLAVPFTDSETRDRLDELFKVRGIPNL 127
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
V++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+REQ+LRSVL + SRDF
Sbjct: 128 VMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARREQTLRSVLVTPSRDF 187
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VIS DG K+ VS+LEGKTIGL FS++SY+ EFTP+LVE Y KLK E FEIVLISL+
Sbjct: 188 VISPDGNKVPVSELEGKTIGLLFSVASYRKCTEFTPKLVEFYTKLKENKEDFEIVLISLE 247
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
D+EESF ++ + PWL+LPF DKS KLAR+F L+TLPTLVI+GPDGKT HSNVAEAI++
Sbjct: 248 DDEESFNQEFKTKPWLSLPFNDKSASKLARHFMLATLPTLVILGPDGKTRHSNVAEAIDD 307
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
+GV A+PFTPEKF EL EI++AK E+QTLES+LVSGDL++V+GK+G KV
Sbjct: 308 YGVLAYPFTPEKFEELKEIEKAKVEAQTLESLLVSGDLNYVLGKDGAKV 356
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21592996|gb|AAM64945.1| PDI-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/350 (67%), Positives = 297/350 (84%), Gaps = 1/350 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L
Sbjct: 7 QVNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLV 66
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
EVYNELS + FE++FVSGDED+E+F YFSKMPWLAVPF+DSETRD+LDELFKV GIP+
Sbjct: 67 EVYNELSSKVGFEIVFVSGDEDEESFGDYFSKMPWLAVPFTDSETRDRLDELFKVRGIPN 126
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+REQ+LRSVL + SRD
Sbjct: 127 LVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARREQTLRSVLVTPSRD 186
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
FVIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL
Sbjct: 187 FVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISL 246
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGK HSNVAEAI+
Sbjct: 247 EDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKIRHSNVAEAID 306
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
++GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV
Sbjct: 307 DYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKV 356
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| TAIR|locus:2195623 | 578 | AT1G60420 [Arabidopsis thalian | 0.994 | 0.602 | 0.676 | 1.6e-127 | |
| TAIR|locus:2128141 | 392 | AT4G31240 [Arabidopsis thalian | 0.905 | 0.808 | 0.395 | 8.4e-58 | |
| RGD|1310489 | 435 | Nxn "nucleoredoxin" [Rattus no | 0.54 | 0.434 | 0.365 | 1.3e-29 | |
| MGI|MGI:109331 | 435 | Nxn "nucleoredoxin" [Mus muscu | 0.54 | 0.434 | 0.365 | 7.9e-30 | |
| UNIPROTKB|A6QLU8 | 435 | NXN "Nucleoredoxin" [Bos tauru | 0.54 | 0.434 | 0.37 | 1.8e-30 | |
| UNIPROTKB|Q6DKJ4 | 435 | NXN "Nucleoredoxin" [Homo sapi | 0.54 | 0.434 | 0.365 | 6.2e-30 | |
| ZFIN|ZDB-GENE-050522-75 | 418 | nxn "nucleoredoxin" [Danio rer | 0.54 | 0.452 | 0.34 | 1.5e-26 | |
| UNIPROTKB|Q6GM16 | 414 | nxn "Nucleoredoxin" [Xenopus l | 0.391 | 0.330 | 0.421 | 2.7e-29 | |
| UNIPROTKB|I3LEF2 | 328 | NXN "Uncharacterized protein" | 0.54 | 0.576 | 0.365 | 6.2e-30 | |
| UNIPROTKB|F1NG23 | 328 | NXN "Uncharacterized protein" | 0.54 | 0.576 | 0.345 | 3.9e-28 |
| TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 236/349 (67%), Positives = 296/349 (84%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L E
Sbjct: 8 VNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLVE 67
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNELS + FE++FVSGDED+E+F YF KMPWLAVPF+DSETRD+LDELFKV GIP+L
Sbjct: 68 VYNELSSKVGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPNL 127
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
V++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+R Q+LRSVL + SRDF
Sbjct: 128 VMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRDF 187
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL+
Sbjct: 188 VISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLE 247
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGKT HSNVAEAI++
Sbjct: 248 DDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAIDD 307
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350
+GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV
Sbjct: 308 YGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKV 356
|
|
| TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 128/324 (39%), Positives = 200/324 (61%)
Query: 8 SHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL 66
S D+ S+L++ +FL+ +G+ V L+ + GK I L+FSA WC PC+ FTP L ++Y L
Sbjct: 14 SGDLYSILAAEGIEFLLSHSGE-VPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENL 72
Query: 67 SRQGD-FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD 125
+G+ E+IFVS D D +F +F MPWLAVPF+ S +KL + + + IP LV L
Sbjct: 73 QNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLS-LLNKLRDKYGISRIPSLVPLY 131
Query: 126 ENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISS 185
+ +++ + +I +YG E +PFT +R +E+K ++ + L +LT SR++V++
Sbjct: 132 SDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVAR 191
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK--GKGESFEIVLISLDDE 243
+G K+ VS L GKTIGLYF FT +LV+VY +L KG SFE++LIS D +
Sbjct: 192 NGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKG-SFEVILISTDRD 250
Query: 244 EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHG 303
F ++ +MPWLA+P++D++R+ L R F + +P LVIIGP+ KT+ +N E + +G
Sbjct: 251 SREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYG 310
Query: 304 VGAFPFTPEKFAELAEIQRAKEES 327
+FPFT + EL + + +S
Sbjct: 311 SRSFPFTESRIVELKACLKKEGDS 334
|
|
| RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 73/200 (36%), Positives = 112/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G FE+IFVS D
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + E VL S D S+ K + + K
Sbjct: 298 NDEDCREFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 73/200 (36%), Positives = 113/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G +FE+IFVS D
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + E VL S D S+ K + + K
Sbjct: 298 NDEDCREFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 74/200 (37%), Positives = 113/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+RSNG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G FE+IFVS D
Sbjct: 178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+++FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ G+P+ + + E+ + E VL S D S+ K + + K
Sbjct: 298 NDEDCRGFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G +FE+IFVS D
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + A+ + VL S D S+ K + + K
Sbjct: 298 NDEDCREFPWHPKPVLELSDSNA-AQLNEGPCLVLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 68/200 (34%), Positives = 105/200 (52%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+N +L+G +G+YFSA WC PC+ T +L E Y ++ G FE++FVS D
Sbjct: 161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSAD 220
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+F YFS+MPWLAVP+SD R +L+ L+ + GIP L++LD G +++ G VEI+
Sbjct: 221 RSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEIL 280
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + E+ E E + + + D K + + K
Sbjct: 281 NDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGEL--DPAKELIQPIAEKI 338
Query: 200 IGLYFSMSSYKASAEFTPRL 219
M+ YKA E TP L
Sbjct: 339 ------MAKYKAKEEETPLL 352
|
|
| UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 59/140 (42%), Positives = 93/140 (66%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
LIR+N + +L+G +G+YFSA WC PC+ T +L E Y ++ G FE++ VS D
Sbjct: 157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSAD 216
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP+SD R +L+ L+ + GIP+L+ILD G+V++ G VE++
Sbjct: 217 RSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVL 276
Query: 140 REYGVEGYPFTVERIKEMKE 159
R+ + +P+ + + E+ E
Sbjct: 277 RDIDCKEFPWHPKPVVELTE 296
|
|
| UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 73/200 (36%), Positives = 113/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G FE+IFVS D
Sbjct: 71 LLRNNGPALESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 130
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+++FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 131 RSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 190
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ G+P+ + + E+ + E VL S D S+ K + + K
Sbjct: 191 NDEDCRGFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 248
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 249 I------AKYKAKEEEAPLL 262
|
|
| UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 69/200 (34%), Positives = 111/200 (55%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+NG + +L+G +G+YFSA WC PC+ T +L E Y ++ G FE++FVS D
Sbjct: 71 LLRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEILFVSAD 130
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+++FK YFS+MPW+AVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 131 RSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVLDSQGEVITRQGRVEVL 190
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + E VL S D S+ K + + K
Sbjct: 191 NDIECREFPWHPKPVLELTDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 248
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 249 I------AKYKAKEEEAPLL 262
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O80763 | NRX1_ARATH | 1, ., 8, ., 1, ., 8 | 0.6742 | 0.9971 | 0.6038 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 350 | |||
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 4e-64 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 3e-53 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 1e-47 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 4e-38 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 1e-27 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 2e-22 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 4e-19 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 3e-14 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 1e-13 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 4e-10 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 3e-09 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 1e-08 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 7e-08 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 7e-08 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 7e-08 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 1e-07 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 5e-07 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 2e-05 | |
| cd03011 | 123 | cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, | 2e-05 | |
| cd03010 | 127 | cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (a | 6e-05 | |
| pfam00085 | 104 | pfam00085, Thioredoxin, Thioredoxin | 1e-04 | |
| TIGR01068 | 101 | TIGR01068, thioredoxin, thioredoxin | 2e-04 | |
| cd01659 | 69 | cd01659, TRX_superfamily, Thioredoxin (TRX) superf | 4e-04 | |
| pfam13899 | 81 | pfam13899, Thioredoxin_7, Thioredoxin-like | 5e-04 | |
| cd02950 | 142 | cd02950, TxlA, TRX-like protein A (TxlA) family; T | 7e-04 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 0.001 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 0.002 | |
| cd02967 | 114 | cd02967, mauD, Methylamine utilization (mau) D fam | 0.002 | |
| TIGR00385 | 173 | TIGR00385, dsbE, periplasmic protein thiol:disulfi | 0.002 | |
| PRK10996 | 139 | PRK10996, PRK10996, thioredoxin 2; Provisional | 0.004 | |
| PRK09381 | 109 | PRK09381, trxA, thioredoxin; Provisional | 0.004 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 4e-64
Identities = 70/131 (53%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
Query: 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVS 78
DFL+R++G +V + SL+GK +GLYFSASWC PC+ FTP L E Y +L +FE++F+S
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 79 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEI 138
D D+E+F YFSKMPWLAVPFSD E R +L+ FK+ GIP L+ILD +G+V++ E+
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 139 IREYGVEGYPF 149
+ EYG + +PF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 3e-53
Identities = 62/133 (46%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Query: 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVS 78
FL+ G V + +L+GK +GLYFSASWC PC+ FTP L E Y +L +FE++FVS
Sbjct: 1 LFLLDGEG-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVS 59
Query: 79 GDEDDEAFKGYFSKM-PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137
D +E+F YFS+M PWLAVPF D E R+ L++ FKV GIP LV+L +G V++ +
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 138 IIRE-YGVEGYPF 149
+ E G +P+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-47
Identities = 66/131 (50%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239
DF++ +DG K+ VS LEGKT+GLYFS S FTP+LVE YEKLK G++FEIV IS
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 240 LDDEEESFKRDLGSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
D +EESF MPWLA+PF D+ R +L R F++ +PTL+I+ DG+ + ++ E
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 299 IEEHGVGAFPF 309
+ E+G AFPF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 4e-38
Identities = 63/133 (47%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239
F++ +G + VS LEGKT+GLYFS S FTP+LVE YEKLK +G++FEIV +S
Sbjct: 1 LFLLDGEG-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVS 59
Query: 240 LDDEEESFKRDLGSM-PWLALPFKDKS-REKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297
D EESF M PWLA+PF+D+ RE L + F++ +PTLV++ PDG + +N +
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 298 AIEE-HGVGAFPF 309
+EE G AFP+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-27
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP--WLA 97
+ LYF ASWC PC+ FTP L E+Y +L ++ E+++VS D D+E +K Y KMP WL
Sbjct: 4 VLLYFWASWCPPCRAFTPELKELYEKL-KKPKVEIVYVSLDRDEEEWKKYLKKMPKDWLN 62
Query: 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
VPF D E R++L L+ V IP LV+LD++G+V
Sbjct: 63 VPFGDKE-RNELLRLYGVKAIPTLVLLDKDGRV 94
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-22
Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP- 255
GK + LYF S FTP L E+YEKLK EIV +SLD +EE +K+ L MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPK--VEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 256 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
WL +PF DK R +L R + + +PTLV++ DG+
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-19
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 27 NGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD-E 84
+G V L LKGK+ L F ASWC PC+ P L + E G EV+ V+ D+DD
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG-VEVVGVNVDDDDPA 66
Query: 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
A K + K D +L + + V G+P ++D +G++
Sbjct: 67 AVKAFLKKYGITFPVLLD--PDGELAKAYGVRGLPTTFLIDRDGRI 110
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-14
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-----KGESFEIVLISLDDEEES 246
V+ LE + + L+F F P+L + + +L + +V +S+D E+
Sbjct: 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79
Query: 247 FKRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 304
+ L MP WL LPF+D+ R +L F + LPT+V++ PDG L +N + I G
Sbjct: 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139
Query: 305 GAF 307
F
Sbjct: 140 ACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 23 LIRSNGDQVKLDS-------LKGKIGL-YFSASWCGPCQRFTPILAEVYNELS------R 68
LI++N D+ +LD+ L+ ++ L +F A CQ F P L + + L+ R
Sbjct: 3 LIKNNSDRDELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDR 62
Query: 69 QGDFEVIFVSGDEDDEAFKGYFSKMP--WLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126
+++VS D+ ++ + + MP WL +PF D E R +L+ F V +P +V+L
Sbjct: 63 SAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED-EFRRELEAQFSVEELPTVVVLKP 121
Query: 127 NGKVLSDGGVEIIREYG 143
+G VL+ V+ I G
Sbjct: 122 DGDVLAANAVDEILRLG 138
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-10
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTP-------RLVEVYEKLKGKGE 231
DF + DG+++S+SD +GK + L+F Y +FTP L ++YE+ K G
Sbjct: 7 DFELPDLDGKEVSLSDYKGKWVVLFF----Y--PKDFTPVCTTELPALADLYEEFKKLG- 59
Query: 232 SFEIVLISLDDEE--ESFKRDLG-SMPWLALPFKDKSRE-----KLARYFELSTLPTLVI 283
E++ +S+D E + F LG P L+ D E + E L T +
Sbjct: 60 -VEVLGVSVDSPESHKKFAEKLGLPFPLLS----DPDGEVAKAYGVLNEEEGLALRTTFV 114
Query: 284 IGPDGKTLHS 293
I PDGK +
Sbjct: 115 IDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-09
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 17 SSARDFLIRS-NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
A +F++ G +++L LKGK + L F +WC PC++ P + E+Y + +G E+
Sbjct: 39 KEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG-VEI 97
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
I V+ DE + A K F L P + + R +D + V +P ++D++GKV
Sbjct: 98 IAVNVDETELAVKN-FVNRYGLTFPVAIDKGRQVID-AYGVGPLPTTFLIDKDGKV---- 151
Query: 135 GVEIIR----EYGVEGYPFTVERIK 155
V++I E +E Y +E+IK
Sbjct: 152 -VKVITGEMTEEQLEEY---LEKIK 172
|
Length = 173 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSR--QGDFEVIFVSGDEDDE--AFKGYFSKMPWLA 97
+ F+ C C++ L + ++ + +F VI+V+ D+ E F G LA
Sbjct: 10 VVFTDPDCPYCKKLHKELLK-DPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELA 68
Query: 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V G P +V LD +GK +
Sbjct: 69 -------------RKYGVRGTPTIVFLDGDGKEV 89
|
Length = 105 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-08
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245
DG+ +S+SDL+GK + + F S P L + ++ K G E+V +++DD++
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDP 65
Query: 246 ----SFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
+F + G + P D E LA+ + + LPT +I DG+ +V
Sbjct: 66 AAVKAFLKKYG----ITFPVLLDPDGE-LAKAYGVRGLPTTFLIDRDGRIRARHV 115
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-08
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGKIG-LYF-SASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
A DF L +G +V L KGK L+F + C P LA++Y E + G EV+
Sbjct: 5 APDFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG-VEVL 63
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVP-FSDSETRDKLDELFKVM------GIPHLVILDENG 128
VS D + K F++ L P SD + ++ + + V+ + ++D +G
Sbjct: 64 GVSVDSPESHKK--FAEKLGLPFPLLSDPD--GEVAKAYGVLNEEEGLALRTTFVIDPDG 119
Query: 129 KV 130
K+
Sbjct: 120 KI 121
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-08
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 28/90 (31%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
+ F A WCGPC+ P+L E+ E + + V DE+ E + Y
Sbjct: 15 VDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEY------------ 59
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVL 131
V IP + +NGK +
Sbjct: 60 ------------GVRSIPTFLFF-KNGKEV 76
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 25/150 (16%)
Query: 18 SARDFLIRSNGDQVKLDSLKGKIGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
+ +G V L KGK + ++C C P L ++ +G +V+
Sbjct: 7 DFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG-VDVV 65
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG--------IPHLVILDEN 127
V+ D +++K L P D+ K G P ++DE+
Sbjct: 66 AVNASNDPFFVMNFWAKEG-LKYPV----LADRDGAFTKAYGLTEDAGLRTPRYFLIDED 120
Query: 128 GKVLSDGGVEIIREYGVEGYPFTVERIKEM 157
GK + V P V + +
Sbjct: 121 GK---------VVYLEVGPDPGDVSDAEAV 141
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.0 bits (113), Expect = 5e-07
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 28 GDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA- 85
G + L LKGK L F A WC PC+ P+L E+ E + + V + D A
Sbjct: 22 GAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAA 81
Query: 86 -FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
F +P L + F D + ++D L +P ++D G++L
Sbjct: 82 EFGVAVRSIPTLLL-FKDGK---EVDRLVGGKVLPKEALIDALGELL 124
|
Length = 127 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+FV++ +G+KI + DL+GK + L F + K + P + E+Y K K KG EI+ +
Sbjct: 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAV 100
Query: 239 SLDDEE---ESFKRDLGSMPWLALPFK-DKSREKLARYFELSTLPTLVIIGPDGK 289
++D+ E ++F G L P DK R+ + Y + LPT +I DGK
Sbjct: 101 NVDETELAVKNFVNRYG----LTFPVAIDKGRQVIDAY-GVGPLPTTFLIDKDGK 150
|
Length = 173 |
| >gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 27 NGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG-DEDDE 84
+G+Q L+SL GK L YF A+WC C+ +P + ++ D+ V+ V+ DD
Sbjct: 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQL------AADYPVVSVALRSGDDG 62
Query: 85 AFKGYFSKMP--WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
A + K + + D + + V P +VI+D G V
Sbjct: 63 AVARFMQKKGYGFPVINDPDGV----ISARWGVSVTPAIVIVDPGGIV 106
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123 |
| >gnl|CDD|239308 cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-05
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 34 DSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92
LKGK L ASWC PC+ P+L L+RQG + ++ ++ E + ++
Sbjct: 21 ADLKGKPYLLNVWASWCAPCREEHPVL----MALARQGRVPIYGINYKDNPENALAWLAR 76
Query: 93 M--PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
P+ AV D + R +D V G+P ++D +G +
Sbjct: 77 HGNPYAAV-GFDPDGRVGID--LGVYGVPETFLIDGDGIIR 114
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Length = 127 |
| >gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+ F A WCGPC+ P ++ E V F D D+
Sbjct: 23 VDFYAPWCGPCKALAPEYEKLAQEYKDD----VKFAKVDADENP 62
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 |
| >gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC+ PIL E+ E + V FV + D+
Sbjct: 21 FWAPWCGPCKMIAPILEELAKEYEGK----VKFVKLNVDENP------------------ 58
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
+ + + IP L++ +NGK
Sbjct: 59 ----DIAAKYGIRSIPTLLLF-KNGKE 80
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101 |
| >gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 4e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90
+ F A WC CQ P+LAE+ L++ FE + V D E +
Sbjct: 2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRY 49
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69 |
| >gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 24/84 (28%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
+ F A WC CQ DF D K K L V
Sbjct: 22 VDFGADWCPTCQAL-------------DRDF--------LSDPRVKALAEKFVLLRV--- 57
Query: 102 DSETRDKLDELFKVMGIPHLVILD 125
D TRD L G+PH+V LD
Sbjct: 58 DVTTRDPNLLLDGQ-GVPHVVFLD 80
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81 |
| >gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 24/86 (27%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WC CQ P +A++ + Q +F + ++ D WL
Sbjct: 27 FYADWCTVCQEMAPDVAKLKQKYGDQVNF--VMLNVDNPK-----------WL------- 66
Query: 104 ETRDKLDELFKVMGIPHLVILDENGK 129
++D ++V GIPH V LD G
Sbjct: 67 ---PEIDR-YRVDGIPHFVFLDREGN 88
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 32/143 (22%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSY-KASAEFTP-------RLVEVYEKLKGKG 230
DF + ++DG ++S+SD +GK + L+F Y K FTP ++ E+ G
Sbjct: 4 DFTLPATDGGEVSLSDFKGKWVVLFF----YPKD---FTPVCTTELCAFRDLAEEFAKGG 56
Query: 231 ESFEIVLISLDDEE--ESFKRDLGSMPWLALPFKDKSREKLAR----YFELSTLPTL--- 281
E++ +S+D +++ G + + L D + A+ E S L
Sbjct: 57 --AEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDG---EFAKAYGVLIEKSAGGGLAAR 111
Query: 282 --VIIGPDGKTLHSNVAEAIEEH 302
II PDGK + V
Sbjct: 112 ATFIIDPDGKIRYVEVEPLPTGR 134
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
F A WCG C+ P ++ EL G V
Sbjct: 22 FYAPWCGHCKALAPEYEKLAKELKGDGKVVV 52
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
| >gnl|CDD|239265 cd02967, mauD, Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L+F + C C++ P++ + + +V+ S D + + + K A P+
Sbjct: 26 LFFLSPTCPVCKKLLPVIRSI--ARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYV 82
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
S +L ++V +P+ V+LDE G + + G
Sbjct: 83 LSA---ELGMAYQVSKLPYAVLLDEAGVIAAKG 112
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. Length = 114 |
| >gnl|CDD|129481 TIGR00385, dsbE, periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM--PWLAVP 99
L ASWC PC+ P L NEL++QG ++ V +D + + ++ P+
Sbjct: 68 LNVWASWCPPCRAEHPYL----NELAKQG-LPIVGVDYKDDRQNAIKFLKELGNPYQLSL 122
Query: 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
F D + LD V G P ++D NG +
Sbjct: 123 F-DPDGMLGLD--LGVYGAPETFLVDGNGVIR 151
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins [Protein fate, Protein folding and stabilization]. Length = 173 |
| >gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDF 72
F A WCGPC+ F PI +V E S + F
Sbjct: 59 FWAPWCGPCRNFAPIFEDVAAERSGKVRF 87
|
Length = 139 |
| >gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 36.2 bits (83), Expect = 0.004
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 60
Query: 79 GDED 82
D++
Sbjct: 61 IDQN 64
|
Length = 109 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.94 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.93 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.91 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.9 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.88 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.88 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.88 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.87 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.87 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.87 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.86 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.86 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.86 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.86 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.86 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.85 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.85 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.85 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.84 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.84 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.84 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.84 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.84 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.83 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.83 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.83 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.83 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.83 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.83 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.83 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.82 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.82 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.82 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.82 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.81 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.81 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.8 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.8 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.8 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.79 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.79 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.78 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.78 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.78 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.78 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.78 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.78 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.78 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.78 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.77 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.77 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.77 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.77 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.76 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.76 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.76 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.76 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.76 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.76 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.75 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.75 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.75 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.75 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.75 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.74 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.74 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.74 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.74 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.74 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.74 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.73 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.71 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.71 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.7 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.69 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.68 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.68 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.68 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.67 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.67 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.67 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.66 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.65 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.64 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.64 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.63 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.63 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.63 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.63 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.62 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.62 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.61 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.61 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.61 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.6 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.59 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.59 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.57 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.57 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.57 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.57 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.56 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.56 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.55 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.55 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.55 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.55 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.53 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.53 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.52 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.52 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.52 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.51 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.5 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.5 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.48 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.46 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.46 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.46 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.45 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.45 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.45 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.45 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.44 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.43 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.43 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.43 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.42 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.41 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.41 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.4 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.4 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.4 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.39 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.38 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.38 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.38 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.37 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.36 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.36 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.36 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.36 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.36 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.35 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.35 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.35 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.35 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.34 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.34 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.34 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.33 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.32 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.32 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.31 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.3 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.3 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.3 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.29 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.27 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.27 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.27 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.27 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.26 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.26 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.25 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.25 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.24 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.24 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.24 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.24 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.24 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.24 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.23 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.23 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 99.23 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.23 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.22 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.22 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.22 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.22 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.21 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.21 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.21 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.21 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.21 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.19 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.19 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.18 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.18 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.18 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.17 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.17 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.16 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.16 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.15 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.15 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.15 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.15 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.14 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.14 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.14 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.13 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.13 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.12 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.12 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.11 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.11 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.08 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.07 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.05 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.05 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.03 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.03 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.03 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 99.02 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.02 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 99.02 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.01 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.01 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.01 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.99 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.99 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.98 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.96 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.95 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.95 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.93 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.92 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.92 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.9 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.9 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.9 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.89 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.87 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 98.87 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.84 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.84 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.83 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.83 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.82 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.81 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.81 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.8 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.79 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.79 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.77 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.76 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.75 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.75 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.74 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.73 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.69 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.68 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.66 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.66 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.64 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.61 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.61 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.6 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.59 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.55 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.54 | |
| smart00594 | 122 | UAS UAS domain. | 98.49 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.48 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.47 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.44 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.44 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.43 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.43 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.42 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.42 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.38 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.35 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.3 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.29 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.28 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.25 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.22 | |
| smart00594 | 122 | UAS UAS domain. | 98.21 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 98.21 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.17 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.16 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.12 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.06 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.05 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 98.02 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 98.0 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.99 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 97.95 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.94 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.93 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 97.88 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.87 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.86 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.85 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.84 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.81 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.81 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.78 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.75 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.74 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.72 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.65 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.62 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.59 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.57 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.57 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.57 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.56 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.56 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.41 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.39 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.37 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.37 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.36 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.34 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.26 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.25 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.23 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.12 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.12 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.06 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.03 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 97.01 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.96 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 96.88 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.84 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.84 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 96.72 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.65 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 96.65 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.65 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 96.59 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.59 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.47 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.44 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.41 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 96.36 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.3 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 96.29 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.23 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 96.2 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 96.2 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.15 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 96.1 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 96.08 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 96.08 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 96.04 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 96.04 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.96 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 95.89 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 95.89 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.83 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 95.82 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 95.82 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 95.75 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 95.75 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.73 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 95.7 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 95.7 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 95.68 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 95.68 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.58 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 95.46 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 95.43 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 95.38 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 95.32 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 95.32 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 95.29 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.26 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 95.24 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 95.15 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 95.11 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 95.11 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 95.07 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 95.04 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 94.99 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 94.97 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 94.97 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 94.92 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 94.9 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 94.88 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 94.79 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 94.68 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 94.65 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 94.64 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 94.53 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 94.39 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 94.01 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 93.86 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 93.53 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 93.46 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 93.25 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 93.11 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 92.75 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 92.57 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 92.22 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 92.2 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 92.15 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 91.71 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 91.61 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 91.26 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 90.27 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 90.17 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 90.11 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 90.11 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 89.31 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 88.72 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 88.54 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 87.42 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 86.78 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 84.09 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 84.01 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 83.8 | |
| cd03060 | 71 | GST_N_Omega_like GST_N family, Omega-like subfamil | 83.35 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 83.34 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 83.25 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 82.85 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 81.2 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 80.24 |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=179.65 Aligned_cols=130 Identities=51% Similarity=0.911 Sum_probs=118.7
Q ss_pred CceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccc
Q 018808 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 259 (350)
Q Consensus 180 ~f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 259 (350)
+|+.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++.+++..+++++|+.|.+.+++.+++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 47788999999999999999999999999999999999999999999876445999999999999999999998888777
Q ss_pred cCCc-hhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcCCccCCC
Q 018808 260 PFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPF 309 (350)
Q Consensus 260 ~~~~-~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~ 309 (350)
++.. +....+.+.|++.++|+++|||++|+++.+...++...++..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 7655 5567899999999999999999999999999999999999999997
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=177.65 Aligned_cols=120 Identities=31% Similarity=0.597 Sum_probs=104.6
Q ss_pred ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcC-----CCcEEEEEEeCCCCHHHHHHhhcCCC--Ccccc
Q 018808 188 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-----GESFEIVLISLDDEEESFKRDLGSMP--WLALP 260 (350)
Q Consensus 188 ~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 260 (350)
..+++++++||+|+|+|||+|||+|++++|.|.+++++++++ +.++++|+|+.|.+.+++.+|+++++ |..+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999988753 23499999999999999999999886 66667
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcCCccC
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 307 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~ 307 (350)
+..+....+.+.|++.++|+++|||++|+|+.+.....+++.|..+|
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 77666678999999999999999999999999998888777765544
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=169.56 Aligned_cols=127 Identities=48% Similarity=0.868 Sum_probs=110.4
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC-CCcccc
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM-PWLALP 260 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~ 260 (350)
+.|.+ +.+++++++||++||+||++||++|+.++|.|+++++++++++.++++++|+.|.+.+++++|++++ .|..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 44555 6999999999999999999999999999999999999998752349999999999999999999988 677777
Q ss_pred CCc-hhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhh-cCCccCCC
Q 018808 261 FKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE-HGVGAFPF 309 (350)
Q Consensus 261 ~~~-~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~~~~~~p~ 309 (350)
+.. .....+.+.|++.++|+++|||++|+|+++........ ++..+|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 654 34567888999999999999999999999998877665 88889997
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=164.77 Aligned_cols=129 Identities=55% Similarity=1.134 Sum_probs=117.5
Q ss_pred CceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCccc
Q 018808 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAV 98 (350)
Q Consensus 21 ~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~ 98 (350)
+|+.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++.+++ .++++.|+.|.+.+.++++++..+|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 4777899999999999999 9999999999999999999999999998652 5999999999999999999999998888
Q ss_pred ccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCC
Q 018808 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPF 149 (350)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~ 149 (350)
++.+.+....+++.|++.++|+++|+|++|+++.+.+.+++..++..+||+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 876655667899999999999999999999999999999999999988886
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=170.31 Aligned_cols=122 Identities=11% Similarity=0.148 Sum_probs=98.7
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~ 244 (350)
..+..+|+| +.+.+|+.+++++++||+|||+|||+|||+|+.++|.|++++++++++| ++|++|+++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCH
Confidence 345678999 7899999999999999999999999999999999999999999999888 999999985 467
Q ss_pred HHHHHhhcCCCCccccCCch------hHHH--------HHHHcCCC-------CccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSMPWLALPFKDK------SREK--------LARYFELS-------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~------~~~~--------~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++++|+++++ ++||++.+ .... +...|++. ..|++||||++|+|+.++.|.
T Consensus 92 e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~ 164 (199)
T PTZ00056 92 KDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPR 164 (199)
T ss_pred HHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCC
Confidence 88999998765 67777543 1112 22234332 224899999999999988773
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=163.79 Aligned_cols=121 Identities=28% Similarity=0.430 Sum_probs=108.3
Q ss_pred cccccCCc-ee--cCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 174 LTSHSRDF-VI--SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 174 ~~~~~p~f-~~--~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.|..+|+| +. +.+|+.+++++++||+++|+||++ |||+|+.++|.|.++++++++++ +.+++|+.+.+.. ..+
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHH
Confidence 57889999 64 599999999999999999999999 99999999999999999999888 9999999997776 888
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCC---------CccEEEEECCCCCEEeccchhh
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++++.. .++++..|.+.++.+.|++. ++|+++|||++|+|++++.+..
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 79 FLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp HHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred HHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 887754 78888899889999999998 9999999999999999998853
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=161.84 Aligned_cols=118 Identities=29% Similarity=0.588 Sum_probs=101.3
Q ss_pred CceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC------CEEEEEEECCCCHHHHHhHHhcCC--Cccc
Q 018808 28 GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMP--WLAV 98 (350)
Q Consensus 28 g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~------~~~~v~i~~d~~~~~~~~~~~~~~--~~~~ 98 (350)
-+.+++++++|| ++|+|||+||++|+.++|.|.++|++++++. ++.+|+|+.|.+.+.+++|+++++ |..+
T Consensus 15 ~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 15 TEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 345677899999 9999999999999999999999999887531 599999999998888999999987 6676
Q ss_pred ccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcC
Q 018808 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEG 146 (350)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~ 146 (350)
++.+ +....+++.|++.++|+++|+|++|+++.+++...+..+|..+
T Consensus 95 p~~~-~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 95 PFED-EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred cccc-hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 7665 3345899999999999999999999999998888777776544
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-22 Score=156.80 Aligned_cols=127 Identities=48% Similarity=0.979 Sum_probs=108.3
Q ss_pred ceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcC-CCccc
Q 018808 22 FLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKM-PWLAV 98 (350)
Q Consensus 22 f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~-~~~~~ 98 (350)
|+++.+ +++++++++|| ++|+||++||++|+.++|.|++++++++++ .+++++.|++|.+.+.++++.+++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 344444 69999999999 999999999999999999999999999865 259999999999989999999998 57777
Q ss_pred ccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceec-ccCcCCCC
Q 018808 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIRE-YGVEGYPF 149 (350)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~-~~~~~~p~ 149 (350)
++.+......+.+.|++.++|+++|+|++|+++.+++...+.. ++..+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 7765455568889999999999999999999999987765554 78777776
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=168.73 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=101.4
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------C
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 242 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~ 242 (350)
....+..+|+| +.+.+|+.+++++++||++||+||++||++|..++|.|++++++++++| ++|++|++| +
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPG 149 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCC
Confidence 34577889999 7899999999999999999999999999999999999999999999988 999999985 3
Q ss_pred CHHHHHHhhc-CCCCccccCCch--hHH-HHHHHc-------C------CCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLG-SMPWLALPFKDK--SRE-KLARYF-------E------LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~-------~------v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.++.++|+. ++. +.||++.+ ..+ .+...| + +...|++||||++|+|+.++.|.
T Consensus 150 s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~ 220 (236)
T PLN02399 150 SNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT 220 (236)
T ss_pred CHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC
Confidence 5678888874 443 67877642 222 222222 2 35579999999999999999884
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-22 Score=155.80 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=98.6
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-----CCHHHHHHhhcCCCCccccC
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~~ 261 (350)
|+.+++++++||++||+||++||++|+.++|.|+++++++++++ +.+++|+.+ ++.++++++++++. +++|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC-CCCCE
Confidence 57899999999999999999999999999999999999999877 999999873 56788899998876 68999
Q ss_pred CchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 262 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.|....+.+.|++.++|+++|||++|+|++++.|
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 99999999999999999999999999999999877
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=149.18 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=95.3
Q ss_pred CCc-eecCCCceeeccccC-CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCC
Q 018808 179 RDF-VISSDGRKISVSDLE-GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 256 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~-gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 256 (350)
|+| +.+.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++.++ +.++.++ +.+.++.+++++++..
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCC
Confidence 577 678999999999997 999999999999999999999999998887543 8888775 6688889999988775
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
..+|.+.+ .++.+.|++.++|++++||++|+|+++.+
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 45676553 45889999999999999999999998754
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=159.91 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=96.8
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHHHH
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFKR 249 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~ 249 (350)
+|+| +.+.+|+.+++++++||+|+|+||++||| |+.++|.|+++++++++++ +.+++|+++ ++.+++++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 5788 78999999999999999999999999999 9999999999999999887 999999985 34678899
Q ss_pred hhcC-CCCccccCCchh--HHH-HHHHcC--CCCcc-----------EEEEECCCCCEEeccchhh
Q 018808 250 DLGS-MPWLALPFKDKS--REK-LARYFE--LSTLP-----------TLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 250 ~~~~-~~~~~~~~~~~~--~~~-~~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~~~ 298 (350)
|+++ .. ++||++.|. ... ..+.|+ +..+| ++||||++|+|++++.|..
T Consensus 79 f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 79 FCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred HHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCC
Confidence 9986 44 678877642 222 344454 34566 8999999999999998843
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=160.25 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=97.7
Q ss_pred cccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHH
Q 018808 176 SHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESF 247 (350)
Q Consensus 176 ~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~ 247 (350)
..+|+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|++++++++++| +.|++|++| ++.++.
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHH
Confidence 568999 7899999999999999999999999999999999999999999999988 999999986 355666
Q ss_pred HHhh-cCCCCccccCCch--hH-HHHHHHcC-------------CCCccEEEEECCCCCEEeccchhh
Q 018808 248 KRDL-GSMPWLALPFKDK--SR-EKLARYFE-------------LSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 248 ~~~~-~~~~~~~~~~~~~--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+++ +++. ++||++.+ .. ......|+ +...|++||||++|+|+.++.|..
T Consensus 85 ~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~ 151 (167)
T PLN02412 85 QQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT 151 (167)
T ss_pred HHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC
Confidence 6654 5544 77888652 22 12233222 666899999999999999998843
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=162.78 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=101.3
Q ss_pred hhcccccCCc-eecCC--Cceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDF-VISSD--GRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~--g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
...|.++|+| +.+.+ |+.++++++ +||+++|+||++||++|+.++|.|+++++ ++ ++|++|+.+++.++.
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHH
Confidence 3567889999 67777 467777665 79999999999999999999999988753 35 999999998888888
Q ss_pred HHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 248 KRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+|++++. .+++ ...|....+.+.||+.++|++|+||++|+|++++.|..
T Consensus 113 ~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 113 ISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred HHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCC
Confidence 99988775 4565 35677778899999999999999999999999999854
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=153.04 Aligned_cols=116 Identities=34% Similarity=0.553 Sum_probs=106.5
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
+|.++|+| +.+.+|+.+++++++||+++|.||++ |||.|+..++.|+++++++++.+ +++++|+.| +.++.+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d-~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTD-DPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESS-SHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccc-cccchhhhh
Confidence 57899999 78999999999999999999999999 99999999999999999999887 999999997 555777787
Q ss_pred cCCCCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEec
Q 018808 252 GSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~ 293 (350)
+... +++|+..|...++.+.|++. .+|++||||++|+|+++
T Consensus 78 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 7666 78889999999999999998 99999999999999874
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=153.16 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=101.3
Q ss_pred ccCCc-eecCCC--ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 177 HSRDF-VISSDG--RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 177 ~~p~f-~~~~~g--~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
++|+| +.+.+| +.+++++++||+++|+||++|||+|+.++|.|+++.+++ + +++++|+.+++.+.++++++.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHh
Confidence 57899 678888 889999999999999999999999999999999998765 2 899999999899999999887
Q ss_pred CCCccc-cCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 254 MPWLAL-PFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 254 ~~~~~~-~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
+.. .+ ++..|...++++.|++.++|++++||++|+++.+..|..
T Consensus 77 ~~~-~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 77 HGN-PYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred cCC-CCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccC
Confidence 653 34 345677788999999999999999999999999988843
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=158.59 Aligned_cols=124 Identities=27% Similarity=0.432 Sum_probs=113.4
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
....+..+|+| +.+.+|+.+++++++||+++|+||++||++|+.+.+.|+++++++++++ +++++|++|.+.+++++
T Consensus 34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~ 111 (173)
T PRK03147 34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKN 111 (173)
T ss_pred ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHH
Confidence 34567889999 7899999999999999999999999999999999999999999999876 99999999999999999
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.++++ +++++..+...++.+.|++..+|++++||++|+++....|.
T Consensus 112 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~ 158 (173)
T PRK03147 112 FVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGE 158 (173)
T ss_pred HHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCC
Confidence 998776 67888888888999999999999999999999999888773
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=142.32 Aligned_cols=93 Identities=38% Similarity=0.711 Sum_probs=84.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC--CCccccCCchhHHHHHHHcC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM--PWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 274 (350)
||+++|+||++||++|+.++|.|.++++++++ +.++++|+|++|.+.+++++++++. +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999994 3459999999999999999999977 89999999998899999999
Q ss_pred CCCccEEEEECCCCCE
Q 018808 275 LSTLPTLVIIGPDGKT 290 (350)
Q Consensus 275 v~~~P~~~lid~~G~i 290 (350)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
|
... |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=155.45 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=104.6
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|..+|+| +.+.+|+.+++++++||+++|+||++| ||+|..+++.|+++++++. + ++|++||.| +....++|
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D-~~~~~~~f 93 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISAD-LPFAQKRF 93 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCC-CHHHHHHH
Confidence 468899999 789999999999999999999999999 9999999999999999983 4 999999998 45667888
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCCCCcc---------EEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDK-SREKLARYFELSTLP---------TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~~ 297 (350)
.++++...++++.| ..+.+++.||+...| ++||||++|+|++.+.+.
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECC
Confidence 88776334788888 456999999998777 999999999999998753
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=154.81 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=102.9
Q ss_pred cccccCCc-eecCCC----ceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 174 LTSHSRDF-VISSDG----RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g----~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
+|..+|+| +.+.+| +.+++++++||++||+|| ++||++|..+++.|+++++++.+++ +.+++|++|. .+..
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDS-HFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCC-HHHH
Confidence 47789999 677776 799999999999999999 8999999999999999999999887 9999999984 3333
Q ss_pred HHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++.+.. ..++|+++.|...++++.||+. .+|++||||++|+|++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecC
Confidence 3444432 2367899999999999999986 688999999999999999763
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=149.73 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=104.6
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
+|..+|+| +.+.+|+.+++++++||++||+||++| |++|+.+++.|++++++++ + +.+++|++|. .+..+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 47889999 789999999999999999999999998 6999999999999999974 4 9999999985 56667888
Q ss_pred cCCCCccccCCchhH-HHHHHHcCCCC------ccEEEEECCCCCEEeccchh
Q 018808 252 GSMPWLALPFKDKSR-EKLARYFELST------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~ 297 (350)
+++....++++.|.. ..+.+.||+.. .|++||||++|+|++.+.+.
T Consensus 77 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 77 GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECC
Confidence 877655788888875 89999999863 79999999999999999874
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=175.80 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=107.5
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-----CCHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~ 246 (350)
..+..+|+| +.+.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++++.++ ++||+|+++ .+.++
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGD 108 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHH
Confidence 334578999 789999999987 89999999999999999999999999999998666 999999873 35577
Q ss_pred HHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
+.++++...+.++|+..|...++.+.|+|.++|+++|||++|+++.+..|.+
T Consensus 109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~ 160 (521)
T PRK14018 109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSI 160 (521)
T ss_pred HHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCC
Confidence 7888877766678888898899999999999999999999999999998854
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=151.94 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=107.3
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
..|..+|+| +.+.+|+.+++++++||++||+||++ ||+.|+.+++.|+++++++++++ +++++|+.| +.+++++|
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d-~~~~~~~~ 81 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD-KPEKLSRF 81 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHH
Confidence 357889999 78999999999999999999999987 68889999999999999999887 999999998 56888899
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCc------------cEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTL------------PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------P~~~lid~~G~i~~~~~~ 296 (350)
.++++ ++++++.|..+.+.+.||+... |++||||++|+|+..+.|
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 88775 6788888888899999998654 788999999999999877
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=150.06 Aligned_cols=118 Identities=26% Similarity=0.387 Sum_probs=107.0
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
.+|+| +.+.+|+.+++++++||+++|+|| ++|||.|..+++.|.++++++.+++ +++++|+.| +.+.+.+|.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPD-SVESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHHHHHh
Confidence 57889 789999999999999999999999 5899999999999999999998877 999999998 567888888877
Q ss_pred CCccccCCchhHHHHHHHcCCCCc---------cEEEEECCCCCEEeccchhh
Q 018808 255 PWLALPFKDKSREKLARYFELSTL---------PTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~~~ 298 (350)
+ +.++++.|.+..+.+.||+... |+++|||++|+|++++.|..
T Consensus 79 ~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 79 G-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred C-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC
Confidence 6 6788889998999999999888 99999999999999998843
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=155.75 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=100.4
Q ss_pred hhcccccCCc-eecCCCc--eeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDF-VISSDGR--KISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~--~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
..+|.++|+| +.+.+|+ .++++++ +||+++|+||++|||+|+.++|.++++++ ++ +++++|+.+++.++.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~ 107 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNA 107 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHH
Confidence 4568899999 6788886 5555665 78999999999999999999999988754 34 999999998888888
Q ss_pred HHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+|++++. +.++ +..|...++.+.|++.++|++++||++|++++++.|.
T Consensus 108 ~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~ 157 (173)
T TIGR00385 108 LKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGP 157 (173)
T ss_pred HHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEecc
Confidence 88888776 4565 4567778899999999999999999999999998884
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=154.72 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=95.6
Q ss_pred ccccCCc-eecCCCceeeccccCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHH
Q 018808 175 TSHSRDF-VISSDGRKISVSDLEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 245 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~ 245 (350)
+..+|+| +.+.+|+.+++++++||+ +|+.+||+|||+|+.++|.|+++++++++++ +.|++|++|+ +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 4578999 789999999999999995 4566799999999999999999999999888 9999999752 457
Q ss_pred HHHHhhcCCCCccccCCch--hH----HHHHH------------HcCCCCccE---EEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPWLALPFKDK--SR----EKLAR------------YFELSTLPT---LVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~------------~~~v~~~P~---~~lid~~G~i~~~~~~~ 297 (350)
+..+|+.+...++||+..+ .. ..+.+ .+++.++|+ +||||++|+|++++.|.
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~ 167 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPK 167 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCC
Confidence 7888875332367887743 11 12221 235778994 69999999999999874
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=145.84 Aligned_cols=122 Identities=36% Similarity=0.651 Sum_probs=112.0
Q ss_pred eecCCCceeecc-ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC--CCCcc
Q 018808 182 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS--MPWLA 258 (350)
Q Consensus 182 ~~~~~g~~v~l~-~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~ 258 (350)
+.+.+|..+..+ .++||+|.++|.|.|||||+.+.|.|.++|+++++++..++||+||.|.+.+++..|+.+ .+|..
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 567778777776 689999999999999999999999999999999998888999999999999999999985 57999
Q ss_pred ccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcC
Q 018808 259 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHG 303 (350)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~ 303 (350)
+|+..+..+++.++|+|.++|++.+++++|.++.......+...|
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g 141 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGG 141 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhc
Confidence 999999999999999999999999999999999998887766654
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=155.49 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=95.9
Q ss_pred hhcccccCCc-eecCCCceeecc--ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVS--DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~--~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
..+|..+|+| +.+.+|+.++++ +.+||+++|+||++|||+|+.++|.+.+++++. + +.+++|+. ++.++.+
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~-~~~~~~~ 119 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISD-GTPAEHR 119 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeC-CCHHHHH
Confidence 3578899999 789999999994 579999999999999999999999999987653 3 67888884 4778888
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 249 RDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
+|++++. ++++... ...++.+.|++..+|++++||++|+|+++.
T Consensus 120 ~~~~~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 120 RFLKDHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred HHHHhcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 9998775 3443222 356789999999999999999999999874
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=154.95 Aligned_cols=121 Identities=18% Similarity=0.277 Sum_probs=102.0
Q ss_pred hcccccCCc-eec-CCCc--eeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDF-VIS-SDGR--KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~-~~g~--~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
.+|..+|+| +.+ .+|+ .+++++++||++||+|| ++||++|..+++.|+++++++.+++ ++|++||.|. .+..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~-~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDT-HFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCC-HHHH
Confidence 578899999 666 5676 68888999999999999 9999999999999999999999887 9999999995 3334
Q ss_pred HHhhcC---CCCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 248 KRDLGS---MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 248 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
++|... ...++||++.|.+.++++.||+. ..|++||||++|+|++.+..
T Consensus 80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 444332 22467889999999999999986 46999999999999998864
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=151.14 Aligned_cols=118 Identities=22% Similarity=0.401 Sum_probs=106.9
Q ss_pred ccccCCc-eecCCCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHH
Q 018808 175 TSHSRDF-VISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 245 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~ 245 (350)
|..+|+| +.+.+|+.++++++ ++|++||+||++|||.|..+++.|.++++++++++ +++++|++|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 4578999 78999999999998 89999999999999999999999999999998766 9999999984 678
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 246 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
+++++++++. +.++++.|....+.+.|++..+|+++|||++|+|+++..
T Consensus 79 ~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 79 NMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 8999998776 568888898899999999999999999999999997753
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-20 Score=148.74 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=105.7
Q ss_pred cccccCCc-eecCCCceeeccccCC-CEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~g-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
+|..+|+| +.+.+|+.+++++++| |+++|.|| ++||++|...++.|+++++++++++ +++++|+.| +.+..++|
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d-~~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVD-SPFSLRAW 79 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCC-CHHHHHHH
Confidence 57789999 7889999999999999 98888887 9999999999999999999998877 999999988 56678888
Q ss_pred hcCCCCccccCCchhH--HHHHHHcCCCC------ccEEEEECCCCCEEeccchhh
Q 018808 251 LGSMPWLALPFKDKSR--EKLARYFELST------LPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+++. +++|+..|.. .++.+.||+.. .|+++|||++|+|++++.+..
T Consensus 80 ~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 80 AEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 88776 6788888866 88999999873 348999999999999998843
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-20 Score=149.69 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=93.7
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHHHHhh
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFKRDL 251 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 251 (350)
+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|+++++++++++ +.|++|+++ ++.+..++|+
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHH
Confidence 56 6789999999999999999999999999999999999999999999888 999999962 4567888998
Q ss_pred cC-CCCccccCCch-----hHHHHHHHcC---CCCccE----EEEECCCCCEEeccchh
Q 018808 252 GS-MPWLALPFKDK-----SREKLARYFE---LSTLPT----LVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 252 ~~-~~~~~~~~~~~-----~~~~~~~~~~---v~~~P~----~~lid~~G~i~~~~~~~ 297 (350)
++ ++ ++||++.+ ........|. ...+|+ +||||++|+|+.++.|.
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~ 139 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE 139 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCC
Confidence 75 44 67887654 1111122232 235898 99999999999999884
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=145.75 Aligned_cols=116 Identities=32% Similarity=0.576 Sum_probs=98.2
Q ss_pred hcCccCCcee-c--cCCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 15 LSSSARDFLI-R--SNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 15 ~g~~~p~f~~-~--~~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
+|+++|+|.+ + .+|+.+++++++|| ++|+||++ |||+|+.++|.+.++++++++++ +.+++|+.+.+.. ++++
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~-v~~v~v~~~~~~~-~~~~ 79 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG-VDVVGVSSDDDPP-VREF 79 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-CEEEEEEESSSHH-HHHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc-eEEEEecccCCHH-HHHH
Confidence 5999999987 4 89999999999999 99999999 99999999999999999998875 9999999887766 8888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCC---------CcceEEEECCCCeEEecC
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSDG 134 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~ 134 (350)
.+.++....-..| ....+.+.|++. .+|++++||++|+|++..
T Consensus 80 ~~~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 80 LKKYGINFPVLSD--PDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HHHTTTTSEEEEE--TTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HHhhCCCceEEec--hHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 8886543333333 445899999998 999999999999999863
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=150.27 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=103.0
Q ss_pred hhcccccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 172 SVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 172 ~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
..+|.++|+| .. +-+...+++++++||++||+|| +.|||+|..+++.|+++++++.+.+ +++++||.| +...
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D-~~~~ 78 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTD-THFT 78 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCC-CHHH
Confidence 4578899999 33 3455677889999999999999 9999999999999999999999888 999999998 4455
Q ss_pred HHHhhcCC---CCccccCCchhHHHHHHHcCCC----Cc--cEEEEECCCCCEEeccch
Q 018808 247 FKRDLGSM---PWLALPFKDKSREKLARYFELS----TL--PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 247 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~----~~--P~~~lid~~G~i~~~~~~ 296 (350)
.++|.+.. ..++||++.|.+.++++.||+. ++ |++||||++|+|++.+..
T Consensus 79 ~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 79 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred HHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 55555432 3478999999999999999983 55 999999999999999765
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=141.47 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=108.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +++.+|+.++|++++||+|||+|| ..++|.|..++..+++.+.++...| .+|++||.| +....++|
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~D-s~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPD-SPKSHKKF 81 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCC-CHHHHHHH
Confidence 468999999 899999999999999999999988 5599999999999999999999988 999999999 77788888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccc
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~ 295 (350)
.+++. ++|+.++|.+.++++.||+. ..+++||||++|+|++.+.
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 88887 88999999999999999972 4679999999999999983
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=137.09 Aligned_cols=109 Identities=22% Similarity=0.484 Sum_probs=92.9
Q ss_pred CCcee-ccCCceeecCCCC-Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCc
Q 018808 20 RDFLI-RSNGDQVKLDSLK-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~-gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~ 96 (350)
|+|.+ +.+|+.+++++++ || ++|+||++||++|+.++|.+.++++++++ .+.++.++ +.+.++.+++.+.++..
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~-~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLAS-DGEKAEHQRFLKKHGLE 77 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEe-CCCHHHHHHHHHHhCCC
Confidence 78977 6899999999997 99 99999999999999999999999988854 37788775 67788899999988875
Q ss_pred ccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
.+|+.. ...+.+.|+++.+|+++++|++|++++++
T Consensus 78 ~~p~~~---~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 78 AFPYVL---SAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCcEEe---cHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 555443 13588999999999999999999999863
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=139.89 Aligned_cols=114 Identities=32% Similarity=0.597 Sum_probs=98.3
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|+++|+|++ +.+|+++++++++|| ++|.||++ ||++|...++.|.++++++++++ +.+++|+.| +.+..+++.+
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~-~~vi~is~d-~~~~~~~~~~ 78 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG-VQVIGISTD-DPEEIKQFLE 78 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-EEEEEEESS-SHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce-EEeeecccc-cccchhhhhh
Confidence 5999999988 579999999999999 99999999 99999999999999999999874 999999985 4457888888
Q ss_pred cCCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEe
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLS 132 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~ 132 (350)
.++....-+.| ....+.+.|++. .+|+++|+|++|+|++
T Consensus 79 ~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 79 EYGLPFPVLSD--PDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHTCSSEEEEE--TTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhccccccccC--cchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 77633333333 335899999998 9999999999999987
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=141.99 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=106.2
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCC
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 255 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 255 (350)
+|+| +.+.+|+.+++++++||+++|+|| ++||++|..+++.|++++++++..+ +.+++|+.| +.+..+++.+++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHhccc
Confidence 6888 789999999999999999999999 7899999999999999999997766 999999997 5677888888874
Q ss_pred CccccCCchhHHHHHHHcCCCCcc---------EEEEECCCCCEEeccchhhh
Q 018808 256 WLALPFKDKSREKLARYFELSTLP---------TLVIIGPDGKTLHSNVAEAI 299 (350)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~~~~ 299 (350)
..+++++.|....+.+.||+...| +++|||++|+|++++.+...
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 478888889888999999988665 89999999999999988543
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=150.44 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=99.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEE-EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH--HHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~ 248 (350)
.+|..+|+| +.+..| .+++++++||+++| +||++|||+|..+++.|+++++++++++ +++++||+|+... +|.
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 368899999 666666 69999999997665 6899999999999999999999999888 9999999995432 332
Q ss_pred -HhhcCCC-CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 249 -RDLGSMP-WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 -~~~~~~~-~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
++.++.+ .++||++.|.++++++.||+. .+|++||||++|+|++....
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~ 135 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYY 135 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEe
Confidence 2333333 368999999999999999984 58999999999999987643
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-19 Score=150.54 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=105.1
Q ss_pred hcccccCCc-eecCCCceeeccccCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC--HHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~--~~~~~ 248 (350)
.+|..+|+| +.+.+|+.+.+++++||+ ||++||++|||+|..+++.|++++++|.++| +++++||+|+. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 578999999 678899988889999996 4689999999999999999999999999988 99999999963 44566
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccch
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~ 296 (350)
+++++. ..++||++.|.+.++++.||+. ..|++||||++|+|+.....
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~ 137 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYY 137 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEc
Confidence 666543 2378999999999999999983 68999999999999998653
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-19 Score=142.92 Aligned_cols=115 Identities=23% Similarity=0.390 Sum_probs=98.5
Q ss_pred cCCc-eecCCCceeeccccC-CC-EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 178 SRDF-VISSDGRKISVSDLE-GK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~-gk-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
+|+| +.+.+|+.++++++. ++ ++|++||++|||+|+.+++.|+++++++.+++ +++++|+.|.. +...++.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCH-HHHHHHHHhc
Confidence 6888 788999999999875 34 56666679999999999999999999999877 99999999854 4445666665
Q ss_pred CCccccCCchhHHHHHHHcCCC-----------------------------CccEEEEECCCCCEEeccch
Q 018808 255 PWLALPFKDKSREKLARYFELS-----------------------------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~~~ 296 (350)
. +++|++.|.+..+.+.||+. .+|++||||++|+|++.+.+
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 4 78999999999999999984 79999999999999998765
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=141.31 Aligned_cols=117 Identities=25% Similarity=0.400 Sum_probs=98.6
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCC---CHHHHHHhh
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEESFKRDL 251 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~---~~~~~~~~~ 251 (350)
+|+| +.+.+|+.+++.+++||+++|+||++||++ |..+++.|+++++++++++ .++++++|+.|. +.+.+++|.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 6889 789999999999999999999999999997 9999999999999998753 359999999973 568888898
Q ss_pred cCCCCccccCCchh---HHHHHHHcCCCC--------------ccEEEEECCCCCEEeccc
Q 018808 252 GSMPWLALPFKDKS---REKLARYFELST--------------LPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~~~~~~v~~--------------~P~~~lid~~G~i~~~~~ 295 (350)
++++ .+++++.+. ...+++.||+.. .|++||||++|+|+..+.
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 8775 455655543 478999999754 357999999999998764
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=134.47 Aligned_cols=112 Identities=27% Similarity=0.404 Sum_probs=101.6
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC-HHHHHHhhcCCCCcccc
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDLGSMPWLALP 260 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~~~ 260 (350)
+.+.+|+.+++++++||+++|+||++||++|+..++.|.++.+++.+.+ +.+++|++|.. .+++++++..+. .+++
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~-~~~~ 80 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYG-ITFP 80 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcC-CCcc
Confidence 5678999999999999999999999999999999999999999997555 99999999976 999999999886 6778
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+..+...++.+.|++.++|+++|+|++|+++++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 81 VLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred eEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 877878899999999999999999999999987643
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=138.03 Aligned_cols=112 Identities=20% Similarity=0.350 Sum_probs=95.0
Q ss_pred CccCCcee-ccCC--ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 17 SSARDFLI-RSNG--DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 17 ~~~p~f~~-~~~g--~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
.++|+|++ +.+| ..+++++++|| ++|+||++||++|+.+.|.|.++.+++ ++.+++|+.+++.+.++++++.
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHh
Confidence 36899988 5677 88999999999 999999999999999999999998775 3899999998889999999888
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.....++ ..|....+++.|++.++|+++++|++|+++++
T Consensus 77 ~~~~~~~~-~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 77 HGNPYAAV-GFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred cCCCCceE-EECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 76533322 22344689999999999999999999999875
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=143.30 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=113.9
Q ss_pred CCCc-EEEEEec---CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 36 LKGK-IGLYFSA---SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 36 ~~gk-~~v~F~~---~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
+++. .++.|++ +||++|+.+.|.+.++.+.+. .+++..+.+|.+.. ..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~---~~~i~~v~vd~~~~----------------------~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP---KLKLEIYDFDTPED----------------------KEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC---CceEEEEecCCccc----------------------HHHHH
Confidence 4444 6666877 999999999999999999884 25555666653321 37999
Q ss_pred hcCCCCcceEEEECCCCeEEe-cCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCcee
Q 018808 112 LFKVMGIPHLVILDENGKVLS-DGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~-~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v 190 (350)
.|+|.++|+++++ ++|+.+. + ..|. .....+..++...... +.. +.. .+...+
T Consensus 72 ~~~V~~~Pt~~~f-~~g~~~~~~-------~~G~----~~~~~l~~~i~~~~~~---~~~----~~~-------L~~~~~ 125 (215)
T TIGR02187 72 KYGVERVPTTIIL-EEGKDGGIR-------YTGI----PAGYEFAALIEDIVRV---SQG----EPG-------LSEKTV 125 (215)
T ss_pred HcCCCccCEEEEE-eCCeeeEEE-------Eeec----CCHHHHHHHHHHHHHh---cCC----CCC-------CCHHHH
Confidence 9999999999999 4666542 2 1121 1223344444322111 000 000 111111
Q ss_pred -eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 191 -SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 191 -~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
.+..+.+.++++.||++||++|+.+.+.++++..+.. ++.+..|+.+.. .++
T Consensus 126 ~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~~~~-----------------------~~~ 178 (215)
T TIGR02187 126 ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEANEN-----------------------PDL 178 (215)
T ss_pred HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeCCCC-----------------------HHH
Confidence 1123455667777999999999999998888876632 277777766643 558
Q ss_pred HHHcCCCCccEEEEECCCCC
Q 018808 270 ARYFELSTLPTLVIIGPDGK 289 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~~G~ 289 (350)
++.|+|.++|++++. .+|+
T Consensus 179 ~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 179 AEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HHHhCCccCCEEEEe-cCCE
Confidence 899999999999887 5675
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=143.28 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=94.0
Q ss_pred hhhhcCccCCcee-ccC--CceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 12 QSLLSSSARDFLI-RSN--GDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~--g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
...+|.++|+|++ +.+ |+.++++++ +|| ++|+||++||++|+.++|.|.++++ + .+++++|+.+++.+..
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~-~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q-GIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c-CCEEEEEECCCCHHHH
Confidence 3567999999988 455 577777765 799 9999999999999999999988754 3 3889999988888889
Q ss_pred HhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++|++.++.....+. .|....+.+.|++.++|+++++|++|++++.
T Consensus 113 ~~~~~~~~~~~~~~~-~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 113 ISWLKELGNPYALSL-FDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred HHHHHHcCCCCceEE-EcCCccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 999988764322211 2334578889999999999999999999885
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=127.77 Aligned_cols=92 Identities=46% Similarity=0.927 Sum_probs=80.9
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC--CCcccccCChhhHHHHHhhcC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM--PWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 114 (350)
|| ++|+||++||++|+.+.|.|.+++++++++.++++|+|+.|.+.+.++++++.. +|.++++.+.. +..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHCC
Confidence 78 999999999999999999999999999954479999999999999999999988 88888877544 569999999
Q ss_pred CCCcceEEEECCCCeE
Q 018808 115 VMGIPHLVILDENGKV 130 (350)
Q Consensus 115 v~~~P~~~lid~~G~v 130 (350)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
|
... |
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=146.26 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=99.3
Q ss_pred hcccccCCc-eecC--CCce---eecccc-CCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 173 VLTSHSRDF-VISS--DGRK---ISVSDL-EGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~--~g~~---v~l~~~-~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
.+|..+|+| +.+. +|+. .+++++ +||+++|+||+. ||++|..+++.|+++++++++++ ++|++||+|+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~ 80 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEF 80 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 478899999 5554 3454 455555 799999999995 99999999999999999999888 999999999532
Q ss_pred --HHHHH-hhcCCC--CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 245 --ESFKR-DLGSMP--WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 --~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
..|.+ +.+... .++||++.|.+.++++.||+. ++|++||||++|+|++...+.
T Consensus 81 ~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 81 VHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred HHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecC
Confidence 33333 222222 368999999999999999997 799999999999999988764
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=148.94 Aligned_cols=121 Identities=22% Similarity=0.382 Sum_probs=94.2
Q ss_pred chhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------C
Q 018808 11 IQSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------E 81 (350)
Q Consensus 11 ~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~ 81 (350)
.....|+.+|+|++ +.+|+.+++++++|| ++|+||++||+.|..++|.|.+++++|++++ +.+++|+++ +
T Consensus 71 ~~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 71 ARAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPG 149 (236)
T ss_pred cchhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecccccccCCC
Confidence 34457999999988 689999999999999 9999999999999999999999999999885 999999975 3
Q ss_pred CHHHHHhHHh-cCCCcccccCC-hhhHH-HHHhhc-------C------CCCcceEEEECCCCeEEec
Q 018808 82 DDEAFKGYFS-KMPWLAVPFSD-SETRD-KLDELF-------K------VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~-~l~~~~-------~------v~~~P~~~lid~~G~v~~~ 133 (350)
+.+++++++. +++ ..+|+.. .+.+. ..+..| + +++.|+++|||++|+++++
T Consensus 150 s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 150 SNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred CHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 5567888873 444 3344432 22111 222222 2 3567999999999999986
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=146.81 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=101.0
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEE-EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH--HHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~ 248 (350)
.+|..+|+| +.+.+|+....++++||+++| +||++||++|..+++.|++++++|+++| ++|++||+|+... +|.
T Consensus 8 ~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 8 LIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWV 85 (215)
T ss_pred cCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHH
Confidence 578999999 677888744335589996554 8899999999999999999999999988 9999999996433 455
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccchh
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 297 (350)
++.++. ..++||++.|.+.++++.||+. ..|++||||++|+|++...+.
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC
Confidence 555431 1478999999999999999973 479999999999999987653
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=144.76 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=97.6
Q ss_pred cccccCCc-eecCCCceeeccccCC-CE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH--HHHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEG-KT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--ESFK 248 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~g-k~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 248 (350)
+|..+|+| +.+.+| .+++++++| |+ +|++||++|||.|..+++.|++++++++++| +++++||+|... .++.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 47789999 667777 589999988 64 5668999999999999999999999999988 999999999532 2233
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC--------CccEEEEECCCCCEEeccchh
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS--------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~--------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+..+ ..++||++.|.+.++++.||+. ..|++||||++|+|+....+.
T Consensus 78 ~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~ 136 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYP 136 (203)
T ss_pred hhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecC
Confidence 322221 3478999999999999999985 245799999999999887653
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=134.93 Aligned_cols=110 Identities=17% Similarity=0.355 Sum_probs=96.9
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-CHHHHHHhhcCCCC
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-EEESFKRDLGSMPW 256 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~~~~~~ 256 (350)
|+| +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|+.|. +.++++++.+++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 677 78899999999999999999999999999999999999999766 4577888875 5888899988876
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++++...+.+.++.+.|++.++|+++|+|++| ++.+..|.
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~ 112 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGV 112 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEecc
Confidence 67888888888999999999999999999999 88888773
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-19 Score=142.40 Aligned_cols=113 Identities=23% Similarity=0.373 Sum_probs=87.8
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHHh
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKG 88 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~~ 88 (350)
.+|+|++ +.+|+++++++++|| ++|+||++||+ |+.++|.|.+++++|++++ +.+++|+++ ++.+.+++
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG-LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC-EEEEEeccCccccCCCCCHHHHHH
Confidence 3689988 689999999999999 99999999999 9999999999999998775 999999875 34577889
Q ss_pred HHhc-CCCcccccCC-hhhHHH-HHhhcC--CCCcc-----------eEEEECCCCeEEec
Q 018808 89 YFSK-MPWLAVPFSD-SETRDK-LDELFK--VMGIP-----------HLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~-~~~~~~~~~~-~~~~~~-l~~~~~--v~~~P-----------~~~lid~~G~v~~~ 133 (350)
|+++ ++. .+|+.. .+.+.. ....|+ +..+| +++|||++|+++++
T Consensus 79 f~~~~~~~-~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 79 FCETNYGV-TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred HHHHhcCC-CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 9876 553 444432 211111 233344 34455 89999999999985
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-18 Score=147.75 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=100.8
Q ss_pred hhhcccccCCc-eec-CCC--ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC-
Q 018808 171 RSVLTSHSRDF-VIS-SDG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE- 243 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~-~~g--~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~- 243 (350)
...+|..+|+| +.+ .+| +.++++++ +||++|++|| ++|||+|..+++.|++++++++++| ++|++||.|+.
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~ 144 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPF 144 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 34789999999 555 344 46899997 8887777777 8999999999999999999999988 99999999962
Q ss_pred -HHHHHHh-hcC--CCCccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccch
Q 018808 244 -EESFKRD-LGS--MPWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 -~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~ 296 (350)
..+|.+. .++ ...++||++.|.+.++++.||+. ..|++||||++|+|++....
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~ 206 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVY 206 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEe
Confidence 2333332 222 13478999999999999999985 58999999999999998854
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-18 Score=176.63 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=106.4
Q ss_pred hhcccccCCc-eec--CCCceeec-cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC---C--C
Q 018808 172 SVLTSHSRDF-VIS--SDGRKISV-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---D--D 242 (350)
Q Consensus 172 ~~~~~~~p~f-~~~--~~g~~v~l-~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~---d--~ 242 (350)
...+..+|+| ..+ .+|+.+++ ++++||+|||+|||+||++|+.++|.|+++++++++++ +.|++|++ | .
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccc
Confidence 3457889999 433 68899988 68999999999999999999999999999999998877 99999985 3 2
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+++++++.+++ +++|+..|....+.+.|++.++|+++|||++|+++.+..|.
T Consensus 469 ~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~ 522 (1057)
T PLN02919 469 DLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGE 522 (1057)
T ss_pred cHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecc
Confidence 5677888887765 67787788888999999999999999999999999998774
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=158.01 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.||.|+|+||++||++|+.+.|.+.++++.+++. ..+.+..++++.+ ...++.|++
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~-----------------------~~~~~~~~v 429 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTAN-----------------------ETPLEEFSW 429 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCC-----------------------ccchhcCCC
Confidence 4789999999999999999999999999988764 2477777777643 235778999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++++|++..++.|
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEG 450 (477)
T ss_pred cccCeEEEEECCCcceeEecC
Confidence 999999999887776555555
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-18 Score=144.28 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=92.3
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~ 83 (350)
...+..+|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|+++ ++.
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecchhccCCCCCCH
Confidence 345788999988 689999999999999 9999999999999999999999999999885 999999974 456
Q ss_pred HHHHhHHhcCCCcccccC-C----hhhHHH--------HHhhcCC-------CCcceEEEECCCCeEEecC
Q 018808 84 EAFKGYFSKMPWLAVPFS-D----SETRDK--------LDELFKV-------MGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~----~~~~~~--------l~~~~~v-------~~~P~~~lid~~G~v~~~~ 134 (350)
+.+++|++.++. .+++. + ...... +...|++ .+-|+++|||++|+++.+.
T Consensus 92 e~~~~f~~~~~~-~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNKI-KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcCC-CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 789999988764 33432 1 111111 2223433 2224799999999999753
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=141.80 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=87.3
Q ss_pred CCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEE------EEEeCCCCHHHHHHhhc----CC
Q 018808 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEI------VLISLDDEEESFKRDLG----SM 254 (350)
Q Consensus 185 ~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~~----~~ 254 (350)
.+.+.++.++++||+.||+|||+||++|+.+.|.|.++ ++++ +.+ ++|+.|+.......|++ +.
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 34567888899999999999999999999999999998 4444 777 99999986655444543 33
Q ss_pred CCcccc---CCchhHHHHHHHcCCCCccEE-EEECCCCCEEeccchhh
Q 018808 255 PWLALP---FKDKSREKLARYFELSTLPTL-VIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 255 ~~~~~~---~~~~~~~~~~~~~~v~~~P~~-~lid~~G~i~~~~~~~~ 298 (350)
. ..+| +..|..+.+...||+.++|++ ||||++|+|++++.|..
T Consensus 121 ~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 121 K-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred c-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCC
Confidence 2 3344 777778889999999999988 89999999999999954
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=141.94 Aligned_cols=115 Identities=23% Similarity=0.380 Sum_probs=88.6
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHHHHH
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEAFK 87 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~~~~ 87 (350)
+.+|+|++ +.+|+.+++++++|| ++|+||++||+.|..++|.|.+++++|++++ +.+++|+++. +.+++.
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEecccccccCCCCCHHHHH
Confidence 67999988 689999999999999 9999999999999999999999999999885 9999999863 445655
Q ss_pred hHH-hcCCCcccccCCh-hhH-HHHHhhc-----------C--CCCcceEEEECCCCeEEec
Q 018808 88 GYF-SKMPWLAVPFSDS-ETR-DKLDELF-----------K--VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~-~~~~~~~~~~~~~-~~~-~~l~~~~-----------~--v~~~P~~~lid~~G~v~~~ 133 (350)
+++ +.++ ..+|+... +.+ ...+..| + +.+.|+++|||++|+++.+
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE
Confidence 554 5544 34454321 111 1222222 2 6678999999999999985
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=137.67 Aligned_cols=117 Identities=26% Similarity=0.570 Sum_probs=102.2
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
-+|+.+|+|++ +.+|+.+++++++|| ++|+||++||+.|+...+.|.+++++++++ ++.++.|++|.+.+.++.+.+
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~ 114 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVN 114 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHH
Confidence 36899999988 689999999999999 999999999999999999999999999876 499999999999999999998
Q ss_pred cCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.++.. +++. .+.+..+++.|++..+|+++++|++|+++..
T Consensus 115 ~~~~~-~~~~-~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 115 RYGLT-FPVA-IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HhCCC-ceEE-ECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 87643 3332 2344689999999999999999999999864
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=136.57 Aligned_cols=116 Identities=18% Similarity=0.355 Sum_probs=99.9
Q ss_pred cCccCCcee-ccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHHH
Q 018808 16 SSSARDFLI-RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~~ 85 (350)
|+.+|+|.+ +.+|+.++++++ +|+ ++|+||++|||.|..+++.|.+++++++++ ++.+++|++|. +.+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHH
Confidence 678999988 679999999998 888 999999999999999999999999999876 49999999875 5778
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
++++.+.++....-+.| ....+++.|++...|+++|+|++|++++..
T Consensus 80 ~~~~~~~~~~~~~~l~D--~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 80 MKAKAKEHGYPFPYLLD--ETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHCCCCceEEEC--CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 89998887755333333 335899999999999999999999999864
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=140.19 Aligned_cols=112 Identities=21% Similarity=0.407 Sum_probs=93.0
Q ss_pred hhcCccCCcee-ccCCceeecC--CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~--~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
.+|+.+|+|++ +.+|+.++++ +++|| ++|+||++|||+|+.++|.+.+++++. .+.++.|+ +++.++.++|
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is-~~~~~~~~~~ 121 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMIS-DGTPAEHRRF 121 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEe-CCCHHHHHHH
Confidence 57999999998 6899999994 57999 999999999999999999999988764 25678887 4567788899
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++++.....+. . ..++.+.|++..+|+.+++|++|++++.
T Consensus 122 ~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 122 LKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHhcCCCcceee-c--hhHHHHhccCCccceEEEECCCCeEEEc
Confidence 988875433332 2 2478899999999999999999999875
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=141.02 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=101.3
Q ss_pred hcccccCCc-ee----cCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 173 VLTSHSRDF-VI----SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~----~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
.+|.++|+| +. +.+|+.+++++++||+++|+||+ .||+.|..+++.|.++++++.++| ++|++||+|.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH
Confidence 578899999 33 35668999999999999999995 789999999999999999999988 99999999964432
Q ss_pred HHHhhc---C---CCCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLG---S---MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++.. . ...++||++.|.++++++.||+. .+|++||||++|+|++...+.
T Consensus 85 -~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~ 146 (199)
T PTZ00253 85 -LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVND 146 (199)
T ss_pred -HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecC
Confidence 22211 1 22478999999999999999985 479999999999999987663
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-18 Score=132.51 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=88.8
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-----CCHHHHHhHHhcCCCccccc
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-----~~~~~~~~~~~~~~~~~~~~ 100 (350)
.|+++++++++|| ++|+||++||++|..++|.|+++++++++++ +.+++|+.+ .+.+.++++.++++....-.
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG-LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC-eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 4578999999999 9999999999999999999999999999774 999999763 45778888988887643333
Q ss_pred CChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.| ....+.+.|++.++|++++||++|++++.
T Consensus 91 ~D--~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 91 ND--NDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred EC--CchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 33 34588999999999999999999999985
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=137.88 Aligned_cols=117 Identities=22% Similarity=0.219 Sum_probs=98.0
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++| |++|..++|.|.++++++. ++++++|+.|. ....++|.
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~-~~~~~~f~ 94 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL-PFAQKRFC 94 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC-HHHHHHHH
Confidence 36999999988 679999999999999 999999999 9999999999999999983 49999999875 45678888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcc---------eEEEECCCCeEEecC
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 134 (350)
+.++...+++........+++.||+...| +++|||++|+|++..
T Consensus 95 ~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 95 GAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 88876545544332344899999998777 999999999999863
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=142.39 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=97.9
Q ss_pred hcccccCCc-eecCCCceeeccc-cCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH--HH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSD-LEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~-~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~ 247 (350)
.+|..+|+| +.+.+|+ +++++ ++||+ +|++||++|||.|..+++.|++++++|++++ ++|++||+|+... +|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHH
Confidence 578999999 6777775 67766 59995 5568899999999999999999999999888 9999999995432 23
Q ss_pred HHhhc-CCC-CccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccch
Q 018808 248 KRDLG-SMP-WLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 248 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~ 296 (350)
.+... ..+ .++||++.|.+.++++.||+. .+|++||||++|+|++....
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~ 144 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYY 144 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEec
Confidence 33222 122 378999999999999999975 57999999999999988764
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-17 Score=152.88 Aligned_cols=134 Identities=16% Similarity=0.262 Sum_probs=105.5
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-----CCHHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEA 85 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-----~~~~~ 85 (350)
...++.+|+|++ +.+|++++++ +|| ++|+||++||++|+.++|.|.+++++++.+ ++.++.|+.+ .+.+.
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGD 108 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHH
Confidence 345678999977 7899999998 899 999999999999999999999999999865 4899999763 34567
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHH
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~ 161 (350)
++++.+..++..+++. .|....+++.|++.++|+++|+|++|+++... .| ....+.+.+++...
T Consensus 109 ~~~~~~~~~y~~~pV~-~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~-------~G----~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 109 FQKWYAGLDYPKLPVL-TDNGGTLAQSLNISVYPSWAIIGKDGDVQRIV-------KG----SISEAQALALIRNP 172 (521)
T ss_pred HHHHHHhCCCccccee-ccccHHHHHHcCCCCcCeEEEEcCCCeEEEEE-------eC----CCCHHHHHHHHHHh
Confidence 7787777766555543 24456899999999999999999999998742 22 23456666666543
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=133.97 Aligned_cols=115 Identities=22% Similarity=0.214 Sum_probs=95.4
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|+++|+|++ +.+|+.+++++++|| ++|+||++| |++|+.+++.|.+++++++ ++.+++|+.|. .+..++|.+
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~-~~~~~~~~~ 77 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL-PFAQKRWCG 77 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC-HHHHHHHHH
Confidence 5899999988 689999999999999 999999998 6999999999999999984 48999999876 556677888
Q ss_pred cCCCcccccCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
.++...++.........+++.|++.. .|+++|||++|+|++.
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 77754455332222258899999864 7899999999999885
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=139.33 Aligned_cols=115 Identities=21% Similarity=0.357 Sum_probs=93.1
Q ss_pred hhhcCccCCcee-ccCCc--eeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 13 SLLSSSARDFLI-RSNGD--QVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~--~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
..+|.++|+|++ +.+|+ .++++++ +|| ++|+||++||++|+.++|.+.+++++ .+++++|+.++..++.+
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHH
Confidence 467999999988 56776 5665675 789 99999999999999999999887652 38899999888888888
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++++.+++. ++....|....+.+.|++.++|+++++|++|+++++
T Consensus 109 ~~~~~~~~~-f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 109 KFLKELGNP-YQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHHHcCCC-CceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 898887653 332222344588999999999999999999999985
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=135.92 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=82.4
Q ss_pred ccCCceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCC
Q 018808 177 HSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 256 (350)
Q Consensus 177 ~~p~f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 256 (350)
..++| ...+|+.+++++++ +|+||++|||+|++++|.|+++++++ + ++|++|++|++.+
T Consensus 54 ~~~~f-~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWF-RLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCcc-CCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC-----------
Confidence 34555 23599999999998 77899999999999999999999998 3 8999999985532
Q ss_pred ccccCCch-hHHHHHHHcCC--CCccEEEEECCCCCEEe-ccchhh
Q 018808 257 LALPFKDK-SREKLARYFEL--STLPTLVIIGPDGKTLH-SNVAEA 298 (350)
Q Consensus 257 ~~~~~~~~-~~~~~~~~~~v--~~~P~~~lid~~G~i~~-~~~~~~ 298 (350)
..||+..+ ....+.+.|++ .++|++||||++|+++. .+.|.+
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~ 158 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGAT 158 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCC
Confidence 57887774 55678889995 69999999999999974 677743
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-17 Score=130.66 Aligned_cols=117 Identities=20% Similarity=0.307 Sum_probs=95.9
Q ss_pred hcCccCCcee-ccCCceeecCCCCC-c-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~g-k-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
+|+.+|+|.+ +.+|+.+++++++| | ++|.|| ++||+.|...+|.|+++++++++++ +.+++|+.|. .+..++|.
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-v~vi~vs~d~-~~~~~~~~ 80 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG-AEVLGISVDS-PFSLRAWA 80 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC-CEEEEecCCC-HHHHHHHH
Confidence 5999999988 67999999999999 8 888887 8999999999999999999998764 9999999774 56688888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
+.++....-+.|.+....+.+.|++.. .|+++|+|++|++++.
T Consensus 81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 877643333444332268899999873 3489999999999985
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=130.84 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=96.3
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+.+|+|++ +.+|+.+++++++|| ++|+||++ ||+.|....+.|.++++++++++ +++++|+.|+ .+.++++.
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~-v~vi~Is~d~-~~~~~~~~ 82 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG-VVVLGISTDK-PEKLSRFA 82 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCCC-HHHHHHHH
Confidence 46999999988 689999999999999 99999986 68899999999999999998875 9999999874 57888888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCc------------ceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGI------------PHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~v~~~ 133 (350)
+.++. .+++.. |....+.+.|++... |+++|||++|+|++.
T Consensus 83 ~~~~~-~~~~l~-D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 83 EKELL-NFTLLS-DEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHhCC-CCeEEE-CCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 87754 333322 333578899998654 678999999999885
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=129.21 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=95.8
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
+++|+|.+ +.+|+.+++++++|| ++|+|| ++|||.|..+++.|.++++++.+++ +++++|+.|. .+.+++|.+.+
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG-AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCCC-HHHHHHHHHHh
Confidence 46899988 689999999999999 999999 5899999999999999999998764 9999999874 57788888877
Q ss_pred CCcccccCChhhHHHHHhhcCCCCc---------ceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDSETRDKLDELFKVMGI---------PHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~ 133 (350)
+.....+.|. ...+.+.|++... |+++++|++|++++.
T Consensus 79 ~~~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 79 GLPFPLLSDP--DGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CCCceEEECC--ccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 6533333333 3589999999988 999999999999985
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=130.04 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=91.4
Q ss_pred hcCccCCcee-ccCC----ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 15 LSSSARDFLI-RSNG----DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g----~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
+|+.+|+|++ +.+| +.+++++++|| ++|+|| ++||+.|...++.|.+++++|.+++ +.+++|++|... ...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~-v~vv~Is~d~~~-~~~ 78 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN-AEVLGVSTDSHF-SHL 78 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEecCCHH-HHH
Confidence 5899999988 4565 79999999999 999999 7999999999999999999998774 999999987542 223
Q ss_pred hHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEecC
Q 018808 88 GYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSDG 134 (350)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 134 (350)
++.+.. ....+++. .|....+++.|++. ..|+++|||++|++++..
T Consensus 79 ~~~~~~~~~~~~~~~~f~~l-~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 79 AWRNTPRKEGGLGKINFPLL-ADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHhhhhhCCccCcceeEE-ECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 333321 11233332 23345899999986 678999999999999863
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-17 Score=135.26 Aligned_cols=121 Identities=25% Similarity=0.381 Sum_probs=90.1
Q ss_pred CchhhhcCccCCcee-ccCCceeecCCCCCc-E-EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-----
Q 018808 10 DIQSLLSSSARDFLI-RSNGDQVKLDSLKGK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE----- 81 (350)
Q Consensus 10 ~~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~-~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~----- 81 (350)
.++.. +.++|+|++ +.+|+.+++++++|| + ++.||++|||+|+.++|.|.+++++|++++ +.+++|+++.
T Consensus 12 ~~~~~-~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g-v~vv~vs~~~~~~~~ 89 (183)
T PTZ00256 12 QIQPP-TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG-LEILAFPCNQFMEQE 89 (183)
T ss_pred cccCC-CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC-cEEEEEecccccccC
Confidence 34444 678999988 689999999999999 5 456699999999999999999999998875 9999999752
Q ss_pred --CHHHHHhHHh-cCCCcccccC-C--hh--hHHHHH------------hhcCCCCcce---EEEECCCCeEEec
Q 018808 82 --DDEAFKGYFS-KMPWLAVPFS-D--SE--TRDKLD------------ELFKVMGIPH---LVILDENGKVLSD 133 (350)
Q Consensus 82 --~~~~~~~~~~-~~~~~~~~~~-~--~~--~~~~l~------------~~~~v~~~P~---~~lid~~G~v~~~ 133 (350)
+.+.+++|++ .++. .+|+. + .+ ....+. ..+++..+|+ ++|||++|+++++
T Consensus 90 ~~~~~~~~~f~~~~~~~-~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 90 PWDEPEIKEYVQKKFNV-DFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CCCHHHHHHHHHHhcCC-CCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 3467888875 4443 34433 1 11 111222 1235778894 6999999999986
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=125.54 Aligned_cols=119 Identities=45% Similarity=0.888 Sum_probs=104.8
Q ss_pred ccCCceeecC-CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhc--CCCcccc
Q 018808 25 RSNGDQVKLD-SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSK--MPWLAVP 99 (350)
Q Consensus 25 ~~~g~~~~l~-~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~--~~~~~~~ 99 (350)
..+|..+..+ .++|| +.++|.+.|||+|+.+.|.|.++|+.+.+++ .+++|.|+.|.+.+.+..+... ..|..+|
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIP 98 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEec
Confidence 4577776666 68999 9999999999999999999999999998764 6999999999999999999985 6799999
Q ss_pred cCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccC
Q 018808 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGV 144 (350)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~ 144 (350)
+.+... +++.++|++.++|.+++++++|.++..++...+...+.
T Consensus 99 f~d~~~-~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 99 FGDDLI-QKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCHHH-HHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 986555 59999999999999999999999998887777766653
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=125.08 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=81.1
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..||+++|+||++||++|+.+.|.+.++++++.+. +.++.|++|.+.. ..+.+.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcC
Confidence 46899999999999999999999999999998754 8899998874311 34678999
Q ss_pred CCCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccC
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSG 337 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 337 (350)
|.++|+++++|++|+++.+..|.. ..++|.+..+...+..++......|
T Consensus 74 V~~iPt~v~~~~~G~~v~~~~G~~--------------~~~~l~~~l~~l~~~~~~~~~~~~~ 122 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQSIGLQ--------------PKQVLAQNLDALVAGEPLPYANAVG 122 (142)
T ss_pred CCCCCEEEEECCCCCEEEEEeCCC--------------CHHHHHHHHHHHHcCCCCCcccccC
Confidence 999999999999999999988832 2344555555555555555544433
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=128.72 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=91.3
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHHH
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFK 248 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~ 248 (350)
.+++| +.+.+|+.+++++++||++||+|||+||++|. .++.|++++++|+++| ++|++|+++ ++.++.+
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHH
Confidence 45677 68899999999999999999999999999996 6999999999999988 999999996 3678888
Q ss_pred Hhhc-CCCCccccCCchhH------HHHHHH----cC--------------------------CCCccEEEEECCCCCEE
Q 018808 249 RDLG-SMPWLALPFKDKSR------EKLARY----FE--------------------------LSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 249 ~~~~-~~~~~~~~~~~~~~------~~~~~~----~~--------------------------v~~~P~~~lid~~G~i~ 291 (350)
+|+. +++ ++||+..+.+ +.+.+. .. |..--+-||||++|+++
T Consensus 81 ~f~~~~~g-~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv 159 (183)
T PRK10606 81 TYCRTTWG-VTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVI 159 (183)
T ss_pred HHHHHccC-CCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEE
Confidence 9987 444 6777763221 122222 21 22223579999999999
Q ss_pred eccchh
Q 018808 292 HSNVAE 297 (350)
Q Consensus 292 ~~~~~~ 297 (350)
.++...
T Consensus 160 ~r~~~~ 165 (183)
T PRK10606 160 QRFSPD 165 (183)
T ss_pred EEECCC
Confidence 998763
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=132.86 Aligned_cols=117 Identities=25% Similarity=0.379 Sum_probs=91.7
Q ss_pred hhcCccCCceec--cCCc--eeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR--SNGD--QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~--~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+.+|+|++. .+|+ .+++++++|| ++|+|| ++||+.|..+++.|.+++++|.+++ +++++|+.|.. +..+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g-v~vi~VS~D~~-~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG-VEVYSVSTDTH-FVHK 80 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC-CcEEEEeCCCH-HHHH
Confidence 679999999884 4676 6888999999 999999 9999999999999999999998775 89999998864 2333
Q ss_pred hHHhc---CCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSK---MPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|... .....+++. .|....+++.|++. ..|+++|||++|+|++.
T Consensus 81 ~~~~~~~~~~~l~fpll-sD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~ 134 (187)
T TIGR03137 81 AWHDTSEAIGKITYPML-GDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAV 134 (187)
T ss_pred HHHhhhhhccCcceeEE-ECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEE
Confidence 33322 112334432 23346899999986 46999999999999885
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=119.06 Aligned_cols=110 Identities=31% Similarity=0.556 Sum_probs=94.7
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC-HHHHHhHHhcCCCcc
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYFSKMPWLA 97 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~-~~~~~~~~~~~~~~~ 97 (350)
+|.+ +.+|+.+++++++|| ++|+||++||+.|+...+.|.++.+++++. ++.++.|+++.. .+.++++++.+++..
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 4656 579999999999999 999999999999999999999999999755 599999999987 899999999887433
Q ss_pred cccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+.+. ...+.+.|++.++|+++++|++|+++++
T Consensus 80 ~~~~~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 80 PVLLDP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred ceEEcC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 333333 4589999999999999999999999874
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=125.18 Aligned_cols=116 Identities=28% Similarity=0.443 Sum_probs=93.8
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChh-hhhhhHHHHHHHHHhccCC--CEEEEEEECCC---CHHHHHhH
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGY 89 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~-C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~---~~~~~~~~ 89 (350)
.+|+|++ +.+|+.+++.+++|| ++|.||++||+. |...++.|.++++++++++ ++.+++|+.|. +.+.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 4799988 689999999999999 999999999997 9999999999999998753 59999999874 45778888
Q ss_pred HhcCCC-cccccCChhhHHHHHhhcCCCCc--------------ceEEEECCCCeEEec
Q 018808 90 FSKMPW-LAVPFSDSETRDKLDELFKVMGI--------------PHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~l~~~~~v~~~--------------P~~~lid~~G~v~~~ 133 (350)
.+.++. +.+.....+....+++.||+... |.++|||++|++++.
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 888752 11222223345689999997543 569999999999875
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=127.94 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=84.7
Q ss_pred CCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHHhHH
Q 018808 20 RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYF 90 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~~~~ 90 (350)
-+|++ +.+|+++++++++|| ++|+||++|||+|...+|.|.+++++|++++ +.+++|+++ ++.+..++|+
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~-~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH-FNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC-eEEEEEeccccccCCCCCHHHHHHHH
Confidence 46877 689999999999999 9999999999999999999999999999875 999999862 4467788888
Q ss_pred hc-CCCcccccC-Ch---hhHHHHHhhcC---CCCcce----EEEECCCCeEEec
Q 018808 91 SK-MPWLAVPFS-DS---ETRDKLDELFK---VMGIPH----LVILDENGKVLSD 133 (350)
Q Consensus 91 ~~-~~~~~~~~~-~~---~~~~~l~~~~~---v~~~P~----~~lid~~G~v~~~ 133 (350)
+. ++. .+|.. +. +........|. ....|+ ++|||++|+++.+
T Consensus 82 ~~~~~~-~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 82 RRNYGV-TFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred HHhcCC-CCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 75 453 34432 10 01011111222 235787 9999999999985
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-16 Score=122.98 Aligned_cols=114 Identities=24% Similarity=0.359 Sum_probs=93.6
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCC
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 94 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~ 94 (350)
.+|+|++ +.+|+.+++++++|| ++|+|| +.||+.|...++.|.++++++++. .+.+++|+.| +.+..+++.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-CHHHHHHHHhccc
Confidence 3799988 689999999999999 999999 689999999999999999999766 4999999986 4567788888773
Q ss_pred CcccccCChhhHHHHHhhcCCCCcc---------eEEEECCCCeEEecC
Q 018808 95 WLAVPFSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (350)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 134 (350)
...+++.. |....+.+.|++...| +++|+|++|++++..
T Consensus 79 ~~~~~~l~-D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 79 GLNFPLLS-DPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred CCCceEEE-CCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 33444332 3335899999988665 899999999999864
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=114.43 Aligned_cols=78 Identities=18% Similarity=0.366 Sum_probs=66.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+||+|||+||++||++|+.+.|.|+++++++ . . +.++.|+.|.+.. ..+++++|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~--v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-D--VVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-C--CEEEEEECCCChH--------------------HHHHHHHcC
Confidence 45899999999999999999999999999998 2 2 8899998875421 146889999
Q ss_pred CCCccEEEEECCCCCEEeccchh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.++||++++ ++|+++.+..|.
T Consensus 69 V~~~Pt~~~~-~~G~~v~~~~G~ 90 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHEEEGI 90 (103)
T ss_pred CCcCCEEEEE-eCCeEEEEEeCC
Confidence 9999998888 999999998884
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=123.98 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=65.6
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhH
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
|+.+++++ +.+|+||++||++|++++|.|++++++++ +.|++|++|+... ..+|...+..
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~-----------~~fp~~~~~~ 103 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL-----------TGFPDPLPAT 103 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc-----------cccccccCCc
Confidence 55555544 45999999999999999999999998872 7899999985431 1233322222
Q ss_pred HHH-HHHc---CCCCccEEEEECCCCCEEe-ccchh
Q 018808 267 EKL-ARYF---ELSTLPTLVIIGPDGKTLH-SNVAE 297 (350)
Q Consensus 267 ~~~-~~~~---~v~~~P~~~lid~~G~i~~-~~~~~ 297 (350)
.+. .+.| ++.++|++++||++|+++. +..|.
T Consensus 104 ~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~ 139 (153)
T TIGR02738 104 PEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGA 139 (153)
T ss_pred hHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecc
Confidence 223 3455 8899999999999988654 56663
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=115.32 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++++||+|||+||+||+.+.|.|.++.+++.+. +.++.|++|.. .++++.|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~-----------------------~~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV-----------------------PDFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 3679999999999999999999999999999765 78999998865 558999999
Q ss_pred CCccEEEEECCCCCEEeccchhh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.++||++++ ++|+.+.+..|..
T Consensus 67 ~~iPTf~~f-k~G~~v~~~~G~~ 88 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKIDLGTG 88 (114)
T ss_pred CCCCEEEEE-ECCEEEEEEcCCC
Confidence 999999999 8999999988744
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=118.49 Aligned_cols=105 Identities=27% Similarity=0.519 Sum_probs=86.5
Q ss_pred CCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-CHHHHHhHHhcCCCc
Q 018808 20 RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-~~~~~~~~~~~~~~~ 96 (350)
|+|++ +.+|+.+++++++|+ ++|+||++||++|+.+.|.|.+++++ +.+++|+.+. +.+.++++.+.++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~- 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQKKGY- 73 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHHcCC-
Confidence 78977 689999999999999 99999999999999999999999876 3467777765 47888888888764
Q ss_pred ccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++. .+.+..+++.|++.++|+++++|++| +++.
T Consensus 74 ~~~~~-~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 74 GFPVI-NDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred CccEE-ECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 34432 13335799999999999999999999 6653
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=129.11 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=92.0
Q ss_pred hhcCccCCceec-cCCceeecCCCCCc-EEE-EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHH-
Q 018808 14 LLSSSARDFLIR-SNGDQVKLDSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFK- 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l~~~~gk-~~v-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~- 87 (350)
.+|+.+|+|++. .+| .+++++++|| ++| +||++||+.|..+++.|.+++++|++++ +++++|++|+... .|.
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~-~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG-VELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 369999999885 455 7999999999 655 6899999999999999999999999875 9999999986533 333
Q ss_pred hHHhcCCC-cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMPW-LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
++.+..+. ..+|+. .|....+++.||+. .+|.++|||++|+|++.
T Consensus 81 ~~~~~~g~~~~fPll-~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 81 DIEERFGIKIPFPVI-ADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred hHHHhcCCCceEEEE-ECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 33334442 345543 23446899999984 58999999999999874
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=129.40 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=95.4
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HHHHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~~~~~ 88 (350)
.+|+.+|+|++ +.+|+...+++++|| +++.||++|||.|..+++.|.+++++|.+++ +++++|++|+. ...|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g-v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN-TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 57999999988 578888888999999 4678999999999999999999999999885 99999999875 335666
Q ss_pred HHhcC-C-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 89 YFSKM-P-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~-~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
+++.. + ...||.. .|....+++.||+. ..|+++|||++|+|++.
T Consensus 82 ~i~~~~~~~i~fPil-~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 82 WIKDNTNIAIPFPVI-ADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred hHHHhcCCCCceeEE-ECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 66543 1 2345543 33445899999973 68999999999999875
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=117.85 Aligned_cols=116 Identities=23% Similarity=0.361 Sum_probs=98.8
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|++||+|++ +.+|+.++|++++|| +||+||- .++|.|..+.-.|.+.+.+|.+.+ .++++|+.|+ .+.-++|+
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~-a~V~GIS~Ds-~~~~~~F~ 82 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG-AVVLGISPDS-PKSHKKFA 82 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC-CEEEEEeCCC-HHHHHHHH
Confidence 46999999988 679999999999999 9999987 689999999999999999999885 9999999874 46778898
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
++++......+|.+ ..+++.||+. ..+.++|||++|+|++.
T Consensus 83 ~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 83 EKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 88886644454444 4799999983 35689999999999874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=156.11 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=97.4
Q ss_pred hcCccCCceec---cCCceeec-CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC---C--CCHH
Q 018808 15 LSSSARDFLIR---SNGDQVKL-DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---D--EDDE 84 (350)
Q Consensus 15 ~g~~~p~f~~~---~~g~~~~l-~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~---d--~~~~ 84 (350)
.|+++|+|... .+|+++++ ++++|| ++|+||++||++|+.++|.|++++++|++++ +.+++|++ | .+.+
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~-~~vvgV~~~~~D~~~~~~ 471 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP-FTVVGVHSAKFDNEKDLE 471 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC-eEEEEEecccccccccHH
Confidence 58999999763 58999998 689999 9999999999999999999999999998774 99999974 3 2467
Q ss_pred HHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++++..+++.....+.|. ...+.+.|++.++|+++|+|++|+++.+
T Consensus 472 ~~~~~~~~~~i~~pvv~D~--~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 472 AIRNAVLRYNISHPVVNDG--DMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHhCCCccEEECC--chHHHHhcCCCccceEEEECCCCeEEEE
Confidence 7888888877544334333 3478999999999999999999999875
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=120.30 Aligned_cols=112 Identities=20% Similarity=0.390 Sum_probs=88.4
Q ss_pred ccCCcee-ccCCceeecCCCC-Cc-E-EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 18 SARDFLI-RSNGDQVKLDSLK-GK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~-gk-~-~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
.+|+|++ +.+|+.++++++. ++ + +++||++|||.|+.+++.|.++++++.+++ +.+++|+.++. +...++.+..
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~-v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG-VELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC-eEEEEEeCCCH-HHHHHHHHhc
Confidence 4799988 6899999999975 45 4 555579999999999999999999998774 99999998765 3445666666
Q ss_pred CCcccccCChhhHHHHHhhcCCC-----------------------------CcceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDSETRDKLDELFKVM-----------------------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~v~~~ 133 (350)
+....-+.| ....+.+.|++. ..|..+|+|++|+|++.
T Consensus 79 ~~~~p~~~D--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 79 FLPFPVYAD--PDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred CCCCeEEEC--CchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 543322444 345899999984 79999999999999875
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=122.75 Aligned_cols=98 Identities=23% Similarity=0.395 Sum_probs=78.5
Q ss_pred cCccCCceeccCCceeecCCCCCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 16 g~~~p~f~~~~~g~~~~l~~~~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
..+.|+|.+. +|+++++++++ +|+||++|||+|+.++|.|+++++++ .+++++|++|...+
T Consensus 52 ~~~~~~f~l~-dG~~v~lsd~~---lV~FwaswCp~C~~e~P~L~~l~~~~----g~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 52 KPAPRWFRLS-NGRQVNLADWK---VVLFMQGHCPYCHQFDPVLKQLAQQY----GFSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCCCccCCC-CCCEeehhHce---EEEEECCCCHhHHHHHHHHHHHHHHc----CCEEEEEEeCCCCC-----------
Confidence 3456688664 99999999997 77899999999999999999999998 38899999886532
Q ss_pred cccccCChhhHHHHHhhcCC--CCcceEEEECCCCeEEe
Q 018808 96 LAVPFSDSETRDKLDELFKV--MGIPHLVILDENGKVLS 132 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v--~~~P~~~lid~~G~v~~ 132 (350)
..||....+....+.+.|++ .++|+++|+|++|++++
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 34554432233467788995 69999999999999864
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=121.22 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=99.9
Q ss_pred cccccCCc-eecCC---Cceeeccc-cCCC-EEEEEEeccCCccChhh-HHHHHHHHHHHhcCCCcE-EEEEEeCCCCHH
Q 018808 174 LTSHSRDF-VISSD---GRKISVSD-LEGK-TIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESF-EIVLISLDDEEE 245 (350)
Q Consensus 174 ~~~~~p~f-~~~~~---g~~v~l~~-~~gk-~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~-~vv~v~~d~~~~ 245 (350)
+|..+|+| +.+.+ |+.+++++ ++|| +||++|++.|||.|..+ ++.+++.++++.+.| + +|++||.| +..
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D-~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVN-DPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECC-CHH
Confidence 47789999 66664 89999999 5886 55555568899999999 999999999999888 8 69999999 566
Q ss_pred HHHHhhcCCCC-ccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPW-LALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
..++|.++... .+||+++|.+.++++.||+. ....+|||| +|+|++.+...
T Consensus 78 ~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~ 140 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEE 140 (155)
T ss_pred HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEec
Confidence 67888887764 48999999999999999983 146789999 79999988764
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=123.09 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=92.0
Q ss_pred hhcCccCCceec--cCC--ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR--SNG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g--~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|.++|+|... .+| ..++|++++|| ++|+|| ++||+.|..+++.|.+++++|.+++ +++++|+.|+. ...+
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g-~~vigIS~D~~-~~~~ 80 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG-VDVYSVSTDTH-FTHK 80 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCH-HHHH
Confidence 469999999774 234 46788899999 999999 9999999999999999999998875 99999998754 3444
Q ss_pred hHHhcC---CCcccccCChhhHHHHHhhcCCC----Cc--ceEEEECCCCeEEec
Q 018808 88 GYFSKM---PWLAVPFSDSETRDKLDELFKVM----GI--PHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~----~~--P~~~lid~~G~v~~~ 133 (350)
+|.+.. ....+|.. .|....+++.||+. +. |.++|||++|+|++.
T Consensus 81 a~~~~~~~~~~l~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 81 AWHSSSETIAKIKYAMI-GDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred HHHHhhccccCCceeEE-EcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 454432 22344544 34567999999983 45 999999999999885
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=120.47 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=84.6
Q ss_pred hhcCccCCceecc-----------CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEE------E
Q 018808 14 LLSSSARDFLIRS-----------NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV------I 75 (350)
Q Consensus 14 ~~g~~~p~f~~~~-----------~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~------v 75 (350)
.+|++.|...+.. +.++++.++++|| .+|+|||+||+.|+.+.|.+.++.+ + .+.+ +
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~-~~~~~~y~~t~ 98 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A-KFPPVKYQTTT 98 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c-CCCcccccceE
Confidence 5688888876643 3347888899999 9999999999999999999999843 3 3677 8
Q ss_pred EEECCCCHHHHHhHHh----c----CCCcccccCChhhHHHHHhhcCCCCcceE-EEECCCCeEEec
Q 018808 76 FVSGDEDDEAFKGYFS----K----MPWLAVPFSDSETRDKLDELFKVMGIPHL-VILDENGKVLSD 133 (350)
Q Consensus 76 ~i~~d~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~v~~~ 133 (350)
.|+.|+.......|.+ + +||..+ +.| ....+...|++.+.|++ +++|++|++++.
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v-llD--~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKGKKENPWSQV-VLD--DKGAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred EEECccchhhHHHHHHHHHHHhcccCCcceE-EEC--CcchHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 8998876555444433 3 333211 222 34578889999999988 899999999985
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=117.17 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=104.0
Q ss_pred hhcccccCCc-eecC-CCc---eeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--C
Q 018808 172 SVLTSHSRDF-VISS-DGR---KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--E 243 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~-~g~---~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~--~ 243 (350)
.++|..+|+| .... .|. .++++++.||+++++|| +...+.|..++..+.+.|++|+++| +++++||+|+ +
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fs 80 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFS 80 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHH
Confidence 4688999999 4444 553 99999998899999998 5578899999999999999999999 9999999995 5
Q ss_pred HHHHHHhhcCCC---CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 244 EESFKRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
..+|.+...+.. .++||+..|..+++++.||+. ++-.+|||||+|+|++....
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~ 142 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVN 142 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEe
Confidence 666777755443 389999999999999999984 46689999999999987654
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=129.44 Aligned_cols=180 Identities=21% Similarity=0.338 Sum_probs=120.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.+|.||++||++|..+.|.+.++.+.++. .+.+..|.++... .++..|++.++|
T Consensus 50 ~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~------------------------~~~~~y~i~gfP 103 (383)
T KOG0191|consen 50 WLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHK------------------------DLCEKYGIQGFP 103 (383)
T ss_pred eEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhH------------------------HHHHhcCCccCc
Confidence 99999999999999999999999999876 3666666665443 799999999999
Q ss_pred eEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCc-eecCCCceeeccccCCC
Q 018808 120 HLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF-VISSDGRKISVSDLEGK 198 (350)
Q Consensus 120 ~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk 198 (350)
++.++.+...++... + +...+.+.++....... ........ ..+ +...+-... -.....
T Consensus 104 tl~~f~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~----~~~~~~~~--~v~~l~~~~~~~~--~~~~~~ 163 (383)
T KOG0191|consen 104 TLKVFRPGKKPIDYS--------G----PRNAESLAEFLIKELEP----SVKKLVEG--EVFELTKDNFDET--VKDSDA 163 (383)
T ss_pred EEEEEcCCCceeecc--------C----cccHHHHHHHHHHhhcc----ccccccCC--ceEEccccchhhh--hhccCc
Confidence 999996553444321 1 22334444443322111 11111100 011 111110000 001235
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.+++.|+++||++|+.+.|.+.++...+.. +..+.+..+.++. ...+...+++..+
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~-----------------------~~~~~~~~~v~~~ 219 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATV-----------------------HKSLASRLEVRGY 219 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccch-----------------------HHHHhhhhcccCC
Confidence 789999999999999999999999998875 2348888776651 2557889999999
Q ss_pred cEEEEECCCCC
Q 018808 279 PTLVIIGPDGK 289 (350)
Q Consensus 279 P~~~lid~~G~ 289 (350)
|++.++-++..
T Consensus 220 Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 220 PTLKLFPPGEE 230 (383)
T ss_pred ceEEEecCCCc
Confidence 99999944444
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-15 Score=114.32 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=68.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|+|||+||+||+.+.|.|+++..++.++ +++..|++|.. .+++.+|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~-----------------------~ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH-----------------------PELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc-----------------------cchHhhccee
Confidence 479999999999999999999999999999776 99999998854 5589999999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++|+++++ ++|+.+.+..|..
T Consensus 115 avPtvlvf-knGe~~d~~vG~~ 135 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDRFVGAV 135 (150)
T ss_pred eeeEEEEE-ECCEEeeeecccC
Confidence 99999999 9999998888854
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=131.23 Aligned_cols=88 Identities=26% Similarity=0.483 Sum_probs=67.6
Q ss_pred ccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 18 ~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
.+++..+.++..++...-.... ++|.|||+||.||+.++|.+.+.+..+++.+ .+.++-|.+...
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~------------- 88 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE------------- 88 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-------------
Confidence 3455666666666655555555 9999999999999999999999999998874 455555544322
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCCeE
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
..+|.+|+|+++||+.++ ++|+.
T Consensus 89 -----------~~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 89 -----------SDLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred -----------hhhHhhhcCCCCCeEEEE-ecCCc
Confidence 378999999999999988 78874
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=123.09 Aligned_cols=118 Identities=20% Similarity=0.341 Sum_probs=89.8
Q ss_pred hhcCccCCceec-c--CCce---eecCCC-CCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH-
Q 018808 14 LLSSSARDFLIR-S--NGDQ---VKLDSL-KGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD- 83 (350)
Q Consensus 14 ~~g~~~p~f~~~-~--~g~~---~~l~~~-~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~- 83 (350)
.+|+.+|+|++. . +|+. ++++++ +|| ++|+||.. ||+.|..+++.|.+++++|++++ +++++|++|+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g-~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG-VEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHH
Confidence 469999999885 3 3454 455555 799 99999995 99999999999999999999885 999999998653
Q ss_pred -HHHHhH-HhcCCC--cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 84 -EAFKGY-FSKMPW--LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 -~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
..|.+. .+..+. ..+|.. .|....+++.|++. ..|.+++||++|+|++.
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMV-ADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred HHHHHhhHHHhCCccccCceEE-ECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 233332 222332 345543 33446899999997 79999999999999884
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=121.31 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=91.9
Q ss_pred hhcCccCCceec-----cCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLIR-----SNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~~-----~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
.+|+++|+|++. .+|+++++++++|| ++|+||. .||+.|..+++.|.+++++|.+++ +++++|++|+.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g-~~vv~IS~d~~~~~~ 85 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN-CEVLACSMDSEYAHL 85 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCHHHHH
Confidence 579999999852 35689999999999 9999996 789999999999999999999885 999999998764422
Q ss_pred Hh--HHh-c--CCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KG--YFS-K--MPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~--~~~-~--~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
.. ... . .+-..+|+. .|...++++.||+. .+|..+|||++|++++.
T Consensus 86 ~~~~~~~~~~~~~~~~fpll-~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 86 QWTLQERKKGGLGTMAIPML-ADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHhChHhhCCccccccceE-ECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 11 111 1 122455654 33456999999985 47899999999999874
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=108.35 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=61.5
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
+++||+++|.|||+||++|+.+.|.+.++++++++ +.++.|..++. ...++++|
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~----------------------~~~l~~~~ 68 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSI----------------------KPSLLSRY 68 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCC----------------------CHHHHHhc
Confidence 56899999999999999999999999999999853 67777765411 14588999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+|.++||+++++ +| .+.++.|
T Consensus 69 ~V~~~PT~~lf~-~g-~~~~~~G 89 (100)
T cd02999 69 GVVGFPTILLFN-ST-PRVRYNG 89 (100)
T ss_pred CCeecCEEEEEc-CC-ceeEecC
Confidence 999999999995 55 5566666
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=118.00 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=87.4
Q ss_pred hcCccCCceec-cCCceeecCCCCC-c--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHHh
Q 018808 15 LSSSARDFLIR-SNGDQVKLDSLKG-K--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFKG 88 (350)
Q Consensus 15 ~g~~~p~f~~~-~~g~~~~l~~~~g-k--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~~ 88 (350)
+|+.+|+|++. .+| .+++++++| + +++.||++|||.|..+++.|++++++|++++ +++++|++|+... .|.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g-v~vigvS~D~~~~~~~~~~ 78 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN-VKLIGLSVDSVESHIKWIE 78 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEECCCHHHHHHHHh
Confidence 48999999885 455 699999988 6 4567999999999999999999999998875 9999999986432 2222
Q ss_pred HHhcC--CCcccccCChhhHHHHHhhcCCC--------CcceEEEECCCCeEEec
Q 018808 89 YFSKM--PWLAVPFSDSETRDKLDELFKVM--------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~--~~~~~~~~~~~~~~~l~~~~~v~--------~~P~~~lid~~G~v~~~ 133 (350)
.+..+ .-..||+. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 79 ~i~~~~~~~~~fpil-~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 79 DIEEYTGVEIPFPII-ADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred hHHHhcCCCCceeEE-ECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 22221 12334433 34456899999975 24579999999999874
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=107.56 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=65.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+|||+||+||+.+.|.+.++.+++... +.++.|++|.+.. + ..+++++|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 5689999999999999999999999998775433 6788888874310 0 1458899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+.+.+..|.
T Consensus 71 ~~iPT~i~f-k~G~~v~~~~G~ 91 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKYEDQ 91 (103)
T ss_pred ccccEEEEE-ECCEEEEEEeCC
Confidence 999999999 899999998883
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=124.18 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=90.3
Q ss_pred hhcCccCCceec--cCC--ceeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HH
Q 018808 14 LLSSSARDFLIR--SNG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DE 84 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g--~~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~ 84 (350)
.+|+.+|+|++. .+| +.++++++ +|+ ++|+|| ++||+.|..+++.|.+++++|++++ +++++|+.|+. ..
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHK 147 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHH
Confidence 679999999873 345 46999998 888 777766 8999999999999999999999885 99999999873 22
Q ss_pred HHHhH-HhcC--CCcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 85 AFKGY-FSKM--PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
.|.+. .+.. ....+|.. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 148 aw~~~~~~~~g~~~l~fPlL-sD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~ 203 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLF-SDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHV 203 (261)
T ss_pred HHHhhhhhhccccCcceEEE-EcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEE
Confidence 33332 2221 22345543 22346899999985 58999999999999885
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=121.55 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=90.6
Q ss_pred hhcCccCCceec-cCCceeec-CCCCCc-EE-EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHH
Q 018808 14 LLSSSARDFLIR-SNGDQVKL-DSLKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l-~~~~gk-~~-v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~ 87 (350)
.+|+.+|+|++. .+|+ +++ ++++|| ++ ++||++||+.|..+++.|.+++++|++++ +++++|++|+... .|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g-~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN-TELIGLSVDSNISHIEWV 85 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHH
Confidence 479999999884 6776 556 558999 55 58899999999999999999999999885 9999999987644 455
Q ss_pred hHHhcC-C-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM-P-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~-~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
++.+.. + ...+|.. .|....+++.||+. ..|.++|||++|+|.+.
T Consensus 86 ~~~~~~~~~~i~fPll-sD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 86 MWIEKNLKVEVPFPII-ADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred hhHHHhcCCCCceEEE-ECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 555531 1 2334433 33446999999974 47999999999999874
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=121.43 Aligned_cols=117 Identities=18% Similarity=0.334 Sum_probs=88.9
Q ss_pred hhcCccCCceec-cCCceeecCC-CCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHH
Q 018808 14 LLSSSARDFLIR-SNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~ 87 (350)
.+|+.+|+|++. .+| .+++++ ++|| +|++||++||+.|..+++.|.+++++|++++ +++++|++|+... .|.
T Consensus 10 ~vG~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~-v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 10 LIGDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN-TELIGLSIDQVFSHIKWV 87 (222)
T ss_pred cCCCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEECCCHHHHHHHH
Confidence 469999999985 566 477876 5999 4557899999999999999999999998875 9999999986543 333
Q ss_pred hHHhc-CC-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 88 GYFSK-MP-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~-~~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
+.+.. .+ ...+|.. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 88 ~~~~~~~g~~i~fPll-sD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 88 EWIKEKLGVEIEFPII-ADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred HhHHHhcCcCcceeEE-EcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 33222 22 1345533 33446899999975 56899999999999764
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=104.40 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+++.. .+++++|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ-----------------------PQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999998753 88888888743 458999999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++ +|+++.+..|
T Consensus 65 ~~~Pt~~~~~-~g~~~~~~~g 84 (96)
T cd02956 65 QALPTVYLFA-AGQPVDGFQG 84 (96)
T ss_pred CCCCEEEEEe-CCEEeeeecC
Confidence 9999999995 9999887776
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-14 Score=106.92 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=66.4
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++++|+||++||++|+.+.|.+.++.+++++.+ +.++.|++|.. ..++++|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE-----------------------RRLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc-----------------------HHHHHHcC
Confidence 367899999999999999999999999999997654 88888887743 45789999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|+++++ ++|+++.+..|
T Consensus 77 V~~~Pt~~i~-~~g~~~~~~~G 97 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFYHDS 97 (111)
T ss_pred CccCCEEEEE-ECCEEEEEecC
Confidence 9999999999 69998888776
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-14 Score=105.16 Aligned_cols=75 Identities=7% Similarity=0.021 Sum_probs=64.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+|||+||++|+.+.|.+.++++++++.. +.++.|+.| . .+++++|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~-----------------------~~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-T-----------------------IDTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-C-----------------------HHHHHHcCC
Confidence 47899999999999999999999999999987544 788888777 2 347899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 70 ~~~Pt~~~~-~~g~~~~~~~G~ 90 (102)
T cd02948 70 KCEPTFLFY-KNGELVAVIRGA 90 (102)
T ss_pred CcCcEEEEE-ECCEEEEEEecC
Confidence 999998888 799999888873
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.7e-14 Score=115.45 Aligned_cols=122 Identities=23% Similarity=0.396 Sum_probs=98.8
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCCCcEEEEEEeCC---CCHHHHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DEEESFK 248 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d---~~~~~~~ 248 (350)
.....++| +.+.+|+.+++++++||++||+|..+.|| .|...+..|.++++++.+++.++++++||+| ++++.++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 44567789 89999999999999999999999999998 7999999999999999987667999999998 5788899
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC----------------CccEEEEECCCCCEEeccc
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS----------------TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~----------------~~P~~~lid~~G~i~~~~~ 295 (350)
+|.+.+ .|..+....+...++.+.|++. ....++||||+|+++..+.
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 998865 3455555556667888888852 3447899999999998764
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-14 Score=104.96 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=65.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++++|.||++||++|+.+.|.+.++++++++. +.+..|++|.. ..++++|+
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~ 69 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD-----------------------RMLCRSQG 69 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc-----------------------HHHHHHcC
Confidence 35689999999999999999999999999999754 88999998854 45789999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++||++++ ++|+.+.++.|
T Consensus 70 v~~~Pt~~~~-~~g~~~~~~~G 90 (101)
T cd03003 70 VNSYPSLYVF-PSGMNPEKYYG 90 (101)
T ss_pred CCccCEEEEE-cCCCCcccCCC
Confidence 9999999999 88988777666
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=108.18 Aligned_cols=89 Identities=22% Similarity=0.394 Sum_probs=68.6
Q ss_pred CC-CEEEEEEeccCCccChhhHHHHH---HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 196 EG-KTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 196 ~g-k~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
.| |+++|+||++||++|+.+.+.+. ++.+.+.+. +.++.|++|.+.... . +........++++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 57 89999999999999999999875 566666543 889999988543211 1 1111224568999
Q ss_pred HcCCCCccEEEEECCC-CCEEeccchh
Q 018808 272 YFELSTLPTLVIIGPD-GKTLHSNVAE 297 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~-G~i~~~~~~~ 297 (350)
+|++.++|+++++|++ |+++.+..|.
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~G~ 105 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLPGY 105 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEecCC
Confidence 9999999999999999 8999998884
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=110.49 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=66.4
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHH
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~ 87 (350)
.++++|++ +.+|+.++|++++|| ++|.|||+||+.|. .++.|.+++++|++++ +.+++++++ ++.++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g-l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG-FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC-eEEEEeeccccccCCCCCHHHHH
Confidence 46789988 689999999999999 99999999999996 5999999999999886 999999986 3567888
Q ss_pred hHHh-cCC
Q 018808 88 GYFS-KMP 94 (350)
Q Consensus 88 ~~~~-~~~ 94 (350)
+|++ .++
T Consensus 81 ~f~~~~~g 88 (183)
T PRK10606 81 TYCRTTWG 88 (183)
T ss_pred HHHHHccC
Confidence 8886 454
|
|
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=105.91 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=87.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++|||.|||+||+||+.+.|.|.++.+++++. +.|+.|++|+. .+++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~-----------------------~dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV-----------------------PDFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC-----------------------HHHHHHcCc
Confidence 4679999999999999999999999999999765 88899999865 568999999
Q ss_pred CCccEEE-EECCCCC-EEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCe
Q 018808 276 STLPTLV-IIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (350)
Q Consensus 276 ~~~P~~~-lid~~G~-i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 341 (350)
.+.|+++ ++ ++|+ .+.+..|... .+.|.....++|.++.+....+......++....+|
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~~tG~~~------k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDLGTGNNN------KINWALKDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEEeccccc------ccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 9877777 66 8998 7777666321 122335566777777776666666667777777776
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=122.77 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=72.5
Q ss_pred ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 188 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 188 ~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
+...++++.|+++||+||++||++|+.+.|.|++++++++ +.|++|++|.+.. ..||.. +.+.
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~-~~d~ 219 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNA-RPDA 219 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcc-cCCH
Confidence 4466778899999999999999999999999999999884 8899999986532 124443 2335
Q ss_pred HHHHHcCCCCccEEEEECCCC-CEEeccch
Q 018808 268 KLARYFELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
.++++|||.++|+++|+|++| ++.....|
T Consensus 220 ~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G 249 (271)
T TIGR02740 220 GQAQQLKIRTVPAVFLADPDPNQFTPIGFG 249 (271)
T ss_pred HHHHHcCCCcCCeEEEEECCCCEEEEEEeC
Confidence 578999999999999999965 44444445
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=118.08 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=70.0
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+.++|||+||++||++|+..+|.|.++..+++++ +.+..|++|.. ..++.+||
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~-----------------------p~vAaqfg 94 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE-----------------------PMVAAQFG 94 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc-----------------------hhHHHHhC
Confidence 34579999999999999999999999999999987 99999999965 45899999
Q ss_pred CCCccEEEEECCCCCEEeccchhh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
|+++|++|+| .+|+.+....|..
T Consensus 95 iqsIPtV~af-~dGqpVdgF~G~q 117 (304)
T COG3118 95 VQSIPTVYAF-KDGQPVDGFQGAQ 117 (304)
T ss_pred cCcCCeEEEe-eCCcCccccCCCC
Confidence 9999999999 9999999888844
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=102.11 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.||+++|.||++||++|+.+.+.+ .++.+.+.+ + +.++.|+++.+.. ...+++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH-------------------HHHHHHHH
Confidence 578999999999999999999877 577777765 3 8899888764321 12568899
Q ss_pred cCCCCccEEEEECC-CCCEEeccchh
Q 018808 273 FELSTLPTLVIIGP-DGKTLHSNVAE 297 (350)
Q Consensus 273 ~~v~~~P~~~lid~-~G~i~~~~~~~ 297 (350)
|++.++|+++++++ +|+++.+..|.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRLPGF 93 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcccccc
Confidence 99999999999998 89999888774
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=101.72 Aligned_cols=70 Identities=17% Similarity=0.366 Sum_probs=62.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ .+.++.|++|..+ .++..|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~------------------------~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVP------------------------DFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCH------------------------HHHHHcCC
Confidence 456 99999999999999999999999999975 3789999988775 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++||++++ ++|+.+.+
T Consensus 67 ~~iPTf~~f-k~G~~v~~ 83 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKI 83 (114)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 79998875
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-13 Score=109.22 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+||++||++|+.+.|.+.++.+++.+.+ +.++.|++|.. .+++++|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~-----------------------~~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRF-----------------------PNVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCC-----------------------HHHHHHcCc
Confidence 35799999999999999999999999999987655 99999999865 346778888
Q ss_pred CC------ccEEEEECCCCCEEeccchhhhhhcCCccCCCCccc
Q 018808 276 ST------LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEK 313 (350)
Q Consensus 276 ~~------~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~ 313 (350)
.. +||++++ ++|+.+.+..|....+.+...+-|+-+.
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~~~ 143 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSKEN 143 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccHHH
Confidence 76 9999999 7999999998866666666566666543
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=102.55 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=63.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH-HHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA-RYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 274 (350)
.++++||.|||+||++|+.+.|.+.++++++++. +.++.|++|.+ ..++ ++|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~-----------------------~~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP-----------------------QGKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-----------------------hHHHHHhcC
Confidence 4689999999999999999999999999999754 88999988854 3466 5899
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++||++++ ++|+...++.|
T Consensus 82 I~~~PTl~lf-~~g~~~~~y~G 102 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPIEYKG 102 (113)
T ss_pred CcccCEEEEE-ECCccceEEeC
Confidence 9999999999 88887666665
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=109.75 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=51.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++++||++||+.|+.+.+.|.+|.++|+ ++.|+.|+.+ |+|.++|
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------------------------------~~V~~vP 64 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------------------------------DANNEYG 64 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------------------------------cCcccce
Confidence 9999999999999999999999999986 3778888632 8999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|+.+.+
T Consensus 65 tfv~~-~~g~~i~r 77 (204)
T PTZ00062 65 VFEFY-QNSQLINS 77 (204)
T ss_pred EEEEE-ECCEEEee
Confidence 99999 79998875
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-13 Score=101.20 Aligned_cols=73 Identities=25% Similarity=0.528 Sum_probs=61.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+|+ ++|+||++||++|+.+.|.|.++++++. ++.++.|+.|...+ ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~---------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDS---------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChH---------------------HHHHHHHcC
Confidence 4588 9999999999999999999999999982 48889998876531 136889999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|.++||++++ ++|+++.+
T Consensus 69 V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999998888 89998764
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=103.11 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.||+++++||++|||+|+.+.+.+.+..+-...-..++.++.++++++............. +.......++++.|||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 5789999999999999999988887654321111123889999998766555555442221 2233345689999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++|++|+++.+..|.
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~ 102 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGY 102 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS
T ss_pred CccCEEEEEcCCCCEEEEecCC
Confidence 9999999999999999888874
|
... |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=100.52 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=64.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.|.++++.+++.+. +.++.|+++.. ..+.++|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-----------------------PGTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC-----------------------hhHHHhCCCC
Confidence 679999999999999999999999999999754 88999988754 3467899999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+|+++++ ++|+++.+..|.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~~G~ 94 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATKVGA 94 (109)
T ss_pred cCCEEEEE-eCCeEEEEecCC
Confidence 99999999 799999887763
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-13 Score=107.70 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=67.7
Q ss_pred cCCceeecCC--CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 26 SNGDQVKLDS--LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 26 ~~g~~~~l~~--~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
++++...+++ ..|+ ++|+||++||++|+.+.|.|.++++++.+ .+.|+.|++|....
T Consensus 6 ~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~------------------ 65 (142)
T cd02950 6 LAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKW------------------ 65 (142)
T ss_pred HhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCccc------------------
Confidence 3444444443 4778 99999999999999999999999999975 47888888875421
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+++.|++.++|++++++++|+++.+
T Consensus 66 ----~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 66 ----LPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred ----HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 257788999999999999999998874
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-13 Score=101.03 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=66.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+|.++++|+|+||+||+.+.|.+.++..+|.+ +.++.|++|. ..++++.++|.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-----------------------~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-----------------------LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-----------------------CHhHHHhcCce
Confidence 68999999999999999999999999999975 7899998884 16689999999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++||++++ ++|+.+.+..|..
T Consensus 74 ~~PTf~f~-k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEVVGAN 94 (106)
T ss_pred EeeEEEEE-ECCEEEEEEecCC
Confidence 99999999 9999999988843
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-13 Score=99.27 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|+|.|+++||+||+.+.|.|.++++++++. +.++.|++|.. .++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev-----------------------~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV-----------------------PVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc-----------------------HHHHHhcCc
Confidence 5789999999999999999999999999999654 78888888854 568999999
Q ss_pred CCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHH
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR 322 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 322 (350)
.+.|+++++ .+|+-+....|-. .-..+.|..+..+++..+.+
T Consensus 67 ~amPtfvff-kngkh~~~d~gt~----~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVDYGSP----DHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred eeCcEEEEE-ECCcEEEEecCCC----CCcEEEEEcCchhHHHHHHH
Confidence 999999999 8888777666521 11234445555555555444
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=99.06 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++.+. +.+..|+++.. .+++++|+|.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY-----------------------ESLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch-----------------------HHHHHHcCCC
Confidence 569999999999999999999999999998643 88888888743 4588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+++++..+|+.+.++.|
T Consensus 73 ~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 73 AYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred cccEEEEEcCCCCCceEccC
Confidence 99999999665588877776
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=98.74 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=57.1
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
++++|| ++|+||++||++|+.+.|.|.++++++++ +.++.|+.+... ..+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~-----------------------~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIK-----------------------PSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCC-----------------------HHHHHh
Confidence 357899 99999999999999999999999999863 667777654211 268899
Q ss_pred cCCCCcceEEEECCCCe
Q 018808 113 FKVMGIPHLVILDENGK 129 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~ 129 (350)
|++.++||+++++ +|.
T Consensus 68 ~~V~~~PT~~lf~-~g~ 83 (100)
T cd02999 68 YGVVGFPTILLFN-STP 83 (100)
T ss_pred cCCeecCEEEEEc-CCc
Confidence 9999999999996 443
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-13 Score=106.48 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=57.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc---
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF--- 113 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 113 (350)
++ .+|+||++||++|+.++|.|.+++++++ +.+++|+.|.... ..++. ..+.+. ..+...|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~------~~fp~----~~~~~~-~~~~~~~~~~ 114 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGL------TGFPD----PLPATP-EVMQTFFPNP 114 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcc------ccccc----ccCCch-HHHHHHhccC
Confidence 45 7999999999999999999999999882 6788888876431 11111 111111 1233445
Q ss_pred CCCCcceEEEECCCCeEEe
Q 018808 114 KVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~ 132 (350)
++.++|+++++|++|+++.
T Consensus 115 ~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred CCCCCCeEEEEeCCCCEEE
Confidence 8899999999999987644
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=97.08 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|+ ++|.||++||++|+.+.|.+.++++.++..+ +.+..|+++.. ..++++|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~-----------------------~~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQE-----------------------PGLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCC-----------------------HhHHHHcCC
Confidence 455 6799999999999999999999998876544 88888887743 347889999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|++ .++.|
T Consensus 70 ~~~Pt~~~~-~~g~~-~~~~G 88 (101)
T cd02994 70 TALPTIYHA-KDGVF-RRYQG 88 (101)
T ss_pred cccCEEEEe-CCCCE-EEecC
Confidence 999999998 88985 55555
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=97.47 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=60.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||++|+.+.|.+.++++++++.+..+.+..++++.. ..++++|+|
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----------------------HhHHhhcCC
Confidence 457999999999999999999999999999976543477777776532 357889999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ .+|. ..++.|
T Consensus 71 ~~~Pt~~l~-~~~~-~~~~~G 89 (104)
T cd03000 71 RGYPTIKLL-KGDL-AYNYRG 89 (104)
T ss_pred ccccEEEEE-cCCC-ceeecC
Confidence 999999999 4554 344444
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=98.24 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=62.8
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.++|.||++||++|+.+.|.+.++++++++....+.++.|+++.. ..++++|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----------------------RELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----------------------hhhHhhcCCCcC
Confidence 499999999999999999999999999986222488888887643 357889999999
Q ss_pred cEEEEECCCCCEEeccch
Q 018808 279 PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 279 P~~~lid~~G~i~~~~~~ 296 (350)
|+++++ ++|+.+.++.|
T Consensus 75 Pt~~~~-~~g~~~~~~~G 91 (102)
T cd03005 75 PTLLLF-KDGEKVDKYKG 91 (102)
T ss_pred CEEEEE-eCCCeeeEeeC
Confidence 999999 78988877777
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=104.58 Aligned_cols=117 Identities=24% Similarity=0.457 Sum_probs=100.4
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHh-cCCCcEEEEEEeCC---CCHHHHHHhhc-
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLK-GKGESFEIVLISLD---DEEESFKRDLG- 252 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~-~~~~~~~vv~v~~d---~~~~~~~~~~~- 252 (350)
+| +.+.+|+.+++.+++||+++|+|..+.|| .|..++..|..+.+++. ..+.+++++.|++| ++++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 57 78999999999999999999999999999 79999999999999999 66677999999998 68888899988
Q ss_pred CC--CCccccCCchhHHHHHHHcCCCC---------------ccEEEEECCCCCEEeccch
Q 018808 253 SM--PWLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 253 ~~--~~~~~~~~~~~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~~~ 296 (350)
.. .|..+........++.++|++.. ...++++|++|+++....+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~ 189 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY 189 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC
Confidence 33 36667776777788999998752 3367899999999988765
|
|
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=101.71 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++++++.+. +.++.|+.+.. .++.++|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE-----------------------RELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC-----------------------HHHHHhcCC
Confidence 4789999999999999999999999999888654 88888877643 458899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 105 ~~~Ptlii~-~~G~~v~~~~G~ 125 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDMLNGA 125 (139)
T ss_pred CccCEEEEE-ECCEEEEEEcCC
Confidence 999999988 699999887773
|
|
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=96.29 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=67.1
Q ss_pred CCCEEEEEEeccC--CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 196 EGKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 196 ~gk~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.|.+++|+||++| ||+|+.+.|.|.++.+++.++ +.++.|+.|+. .+++.+|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~-----------------------~~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE-----------------------QALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC-----------------------HHHHHHc
Confidence 4568999999997 999999999999999999866 88889988865 4689999
Q ss_pred CCCCccEEEEECCCCCEEeccchh
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+|.++||++++ ++|+++.+..|.
T Consensus 80 ~V~sIPTli~f-kdGk~v~~~~G~ 102 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGVLAGI 102 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEEEeCc
Confidence 99999999999 899999998874
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=96.21 Aligned_cols=74 Identities=19% Similarity=0.420 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|+||++||++|+.+.|.|.++.+++.. +..++.|++|.+.- + ...+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~-------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDV-------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCcccc-------------------c-cHHHHHHCCC
Confidence 566 99999999999999999999999887543 36688888876520 0 1268899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++||++++ ++|+.+.+
T Consensus 71 ~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 78988864
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-12 Score=97.25 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhh
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
+++.++.....++ ++|.||++||++|+.+.|.+.++.++++. .+.++.|+++...
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~---------------------- 62 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDR---------------------- 62 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccH----------------------
Confidence 4444444344567 99999999999999999999999999965 4889999988654
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.|++.++|+++++ ++|+.+.
T Consensus 63 --~~~~~~~v~~~Pt~~~~-~~g~~~~ 86 (101)
T cd03003 63 --MLCRSQGVNSYPSLYVF-PSGMNPE 86 (101)
T ss_pred --HHHHHcCCCccCEEEEE-cCCCCcc
Confidence 68999999999999999 7886543
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-12 Score=94.49 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++++||++||+.|+.+.|.+.++.+++.+. +.++.|+.|.. .++.+++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~-----------------------~~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED-----------------------QEIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC-----------------------HHHHHHCCC
Confidence 4689999999999999999999999999998753 88888887743 457899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 66 ~~vPt~~i~-~~g~~v~~~~g~ 86 (97)
T cd02949 66 MGTPTVQFF-KDKELVKEISGV 86 (97)
T ss_pred eeccEEEEE-ECCeEEEEEeCC
Confidence 999999999 689999888773
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=96.25 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=62.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC---CcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.+++++|.||++||++|+.+.|.+.++++++++.. .++.+..|++|.. .+++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~ 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADR 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHh
Confidence 35789999999999999999999999998875421 1378888888754 458999
Q ss_pred cCCCCccEEEEECCCCCEE-eccch
Q 018808 273 FELSTLPTLVIIGPDGKTL-HSNVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~-~~~~~ 296 (350)
|+|.++|+++++ ++|++. ..+.|
T Consensus 74 ~~v~~~Ptl~~~-~~g~~~~~~~~g 97 (108)
T cd02996 74 YRINKYPTLKLF-RNGMMMKREYRG 97 (108)
T ss_pred CCCCcCCEEEEE-eCCcCcceecCC
Confidence 999999999999 889843 44444
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=97.48 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=59.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.++++++.+. +.++.|+++.+. ..++++.|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCC
Confidence 3678999999999999999999999999998754 889999887521 1568899999
Q ss_pred CCccEEEEECCCC
Q 018808 276 STLPTLVIIGPDG 288 (350)
Q Consensus 276 ~~~P~~~lid~~G 288 (350)
.++|+++++++.+
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997766
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=95.44 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=59.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|+||++||++|+.+.|.|.++++++++. .+.++.++.| .. .+++.|++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~------------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TI------------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CH------------------------HHHHHcCC
Confidence 467 999999999999999999999999998754 3778888877 32 57889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999999888 68988764
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=100.58 Aligned_cols=67 Identities=31% Similarity=0.727 Sum_probs=61.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
|+|+|||+||.+|+.+.|.|+++..+|.. .+++..|+.|... +++..|+|..+|
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~------------------------ela~~Y~I~avP 117 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHP------------------------ELAEDYEISAVP 117 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEcccccc------------------------chHhhcceeeee
Confidence 99999999999999999999999999954 5999999998776 699999999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|+.+.+
T Consensus 118 tvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 118 TVLVF-KNGEKVDR 130 (150)
T ss_pred EEEEE-ECCEEeee
Confidence 99999 79988753
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-12 Score=102.81 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=89.5
Q ss_pred hcCccCCceec-cC---CceeecCC-CCCc--EEEEEecCCChhhhhh-hHHHHHHHHHhccCCCE-EEEEEECCCCHHH
Q 018808 15 LSSSARDFLIR-SN---GDQVKLDS-LKGK--IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDF-EVIFVSGDEDDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~~-~~---g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~-~~~l~~l~~~~~~~~~~-~~v~i~~d~~~~~ 85 (350)
+|+.+|+|++. .+ |+.++|++ ++|+ ++++|...|||.|..+ ++.|.+.+++|.+.+ . .+++|+.|+. ..
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~-~~ 78 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDP-FV 78 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCH-HH
Confidence 58999999884 43 89999999 5887 5555567899999998 999999999998876 6 6999998755 45
Q ss_pred HHhHHhcCCC-cccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMPW-LAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
.++|.+..+. ..++.. .|...++++.||+. ....++||| +|+|++.
T Consensus 79 ~~~~~~~~~~~~~f~lL-sD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 79 MKAWGKALGAKDKIRFL-ADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred HHHHHHhhCCCCcEEEE-ECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 7778877775 345533 33446999999983 135779998 7999875
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=95.19 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=94.4
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHHh
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKRD 250 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 250 (350)
-+| ..+.+|+.+++++++||++||...|+.|+.-. ....|+.+|++|+++| ++|+++.+++ +.++..+|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHH
Confidence 356 67899999999999999999999999999887 5567999999999999 9999999973 78999999
Q ss_pred hcCCCCccccCCchhH----------HHHHHHc-------CCCCccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKSR----------EKLARYF-------ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~----------~~~~~~~-------~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.....++||+....+ +-|...- .|..--+-||||++|+|+.|+...
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~ 146 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPK 146 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCC
Confidence 9977678888874221 2232222 134455889999999999998774
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=93.58 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|+ ++|+||++||++|+.+.|.+.++++.+.. .+.++.|+++... .+++.|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQP------------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCH------------------------HHHHHcCC
Confidence 477 99999999999999999999999999865 4788888887654 68999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|++++++ +|+.+.
T Consensus 65 ~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 65 QALPTVYLFA-AGQPVD 80 (96)
T ss_pred CCCCEEEEEe-CCEEee
Confidence 9999999995 888765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-12 Score=96.89 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=61.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
..|+ ++|+||++||++|+.+.|.+.++.++++.. ++.++.|+++... .++..|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~------------------------~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHER------------------------RLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccH------------------------HHHHHcC
Confidence 4678 999999999999999999999999999754 4888888877553 6888999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|.++|+++++ ++|+++.+
T Consensus 77 V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 68887654
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-12 Score=95.97 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=61.5
Q ss_pred CEEEEEEeccCCcc--Ch--hhHHHHHHHHHHHh-cCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 198 KTIGLYFSMSSYKA--SA--EFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 198 k~vlv~f~~~~C~~--C~--~~~~~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.++|++||+.||+| |+ .+.|.+.+++.++- ..+ +.++.|++|.. .+++++
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~-----------------------~~La~~ 82 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKD-----------------------AKVAKK 82 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCC-----------------------HHHHHH
Confidence 58999999999998 99 77888889888873 223 99999999865 569999
Q ss_pred cCCCCccEEEEECCCCCEEeccch
Q 018808 273 FELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|||.++||++++ ++|+++. +.|
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~-~~G 104 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE-YDG 104 (120)
T ss_pred cCCccccEEEEE-ECCEEEE-eeC
Confidence 999999999999 8999887 666
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=96.82 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 274 (350)
++|+++|.||++||++|+.+.|.+.++++++++.+ +.++.|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc----------------------hhhHHhhcC
Confidence 46899999999999999999999999999998655 999999887421 23444 599
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+..+|++++++++++....+.|
T Consensus 76 v~~~Pti~~f~~~~~~~~~y~g 97 (109)
T cd02993 76 LKSFPTILFFPKNSRQPIKYPS 97 (109)
T ss_pred CCcCCEEEEEcCCCCCceeccC
Confidence 9999999999887765555554
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-12 Score=99.50 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=57.6
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..++|+|+|+||++||++|+.+.|.+.+........ ..++.|.+|.+.+ ...+.|
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~~~~~ 70 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PKDEEF 70 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------chhhhc
Confidence 346899999999999999999999998876654322 3466666663321 123467
Q ss_pred CCCC--ccEEEEECCCCCEEeccch
Q 018808 274 ELST--LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~--~P~~~lid~~G~i~~~~~~ 296 (350)
++.+ +|+++++|++|+++.+..+
T Consensus 71 ~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 71 SPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred ccCCCccceEEEECCCCCCchhhcc
Confidence 7765 9999999999999876443
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=98.83 Aligned_cols=72 Identities=19% Similarity=0.406 Sum_probs=61.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.++++.. ++.++.|+++... .+++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~------------------------~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFP------------------------NVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCH------------------------HHHHHcCc
Confidence 356 999999999999999999999999998754 4999999988765 57777887
Q ss_pred CC------cceEEEECCCCeEEecC
Q 018808 116 MG------IPHLVILDENGKVLSDG 134 (350)
Q Consensus 116 ~~------~P~~~lid~~G~v~~~~ 134 (350)
.+ +||++++ ++|+.+.+.
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~ 124 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARR 124 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEE
Confidence 76 9999999 699888764
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-12 Score=95.70 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=62.7
Q ss_pred ccCCceeecC---CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCccccc
Q 018808 25 RSNGDQVKLD---SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 25 ~~~g~~~~l~---~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~ 100 (350)
+++.++++-. .-.++ ++|.||++||++|+.+.|.+.++.+++++ .+.++.|+++...
T Consensus 13 ~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~----------------- 73 (113)
T cd03006 13 DFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQ----------------- 73 (113)
T ss_pred EechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCh-----------------
Confidence 3455554433 23445 99999999999999999999999999965 4888999887664
Q ss_pred CChhhHHHHH-hhcCCCCcceEEEECCCCeE
Q 018808 101 SDSETRDKLD-ELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 101 ~~~~~~~~l~-~~~~v~~~P~~~lid~~G~v 130 (350)
.++ +.|+|.++||+.++ ++|+.
T Consensus 74 -------~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 74 -------GKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred -------HHHHHhcCCcccCEEEEE-ECCcc
Confidence 567 58999999999999 67763
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-12 Score=93.44 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=62.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++.++|+||++||++|+.+.+.+.++++++.+ +.++.|+.+.. ..+.++|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL-----------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch-----------------------HHHHHHCCC
Confidence 367999999999999999999999999887643 77777776532 458899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 70 ~~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred ceeeEEEEE-eCCeEEEEEeCC
Confidence 999998888 899999998884
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=92.44 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.+.|.++.+++.. ++.++.|+.+.. .++.++|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999988732 277877765432 4588999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|+++++ .+|+++.+..|.
T Consensus 68 ~~Pt~~~~-~~g~~~~~~~g~ 87 (97)
T cd02984 68 AVPTFVFF-RNGTIVDRVSGA 87 (97)
T ss_pred cccEEEEE-ECCEEEEEEeCC
Confidence 99999999 689999887773
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=94.62 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.|.++.+++++ +.++.|+.+.. .+++++|+|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~-----------------------~~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA-----------------------PFLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC-----------------------HHHHHHCCC
Confidence 357899999999999999999999999988753 78888888754 458999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
..+|+++++ ++|+++.+..|.
T Consensus 74 ~~vPt~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 74 KVLPTVILF-KNGKTVDRIVGF 94 (113)
T ss_pred ccCCEEEEE-ECCEEEEEEECc
Confidence 999999999 899999887764
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=94.59 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=62.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++.+ +.++.|+.+.. +++++|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh------------------------HHHHhcCCC
Confidence 57999999999999999999999999998853 77887776621 578999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|+++++ ++|+++.+..|.
T Consensus 76 ~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 76 VLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred cCCEEEEE-ECCEEEEEEecH
Confidence 99999999 899999988774
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=92.10 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||++|+.+.|.+.++.+.+...+ .+.++.++++.+ ....+.++|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~---------------------~~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKP---------------------EHDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCC---------------------ccHHHHHhCCC
Confidence 45789999999999999999999999999987532 367777776632 12558899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 74 ~~~Pt~~~~-~~g~~~~~~~g 93 (104)
T cd02997 74 KGFPTFKYF-ENGKFVEKYEG 93 (104)
T ss_pred ccccEEEEE-eCCCeeEEeCC
Confidence 999998877 78998877766
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-11 Score=89.89 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=63.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.+.+.++.+++.+. +.++.|..+.+ .++.++|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN-----------------------PDIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHHcCCC
Confidence 469999999999999999999999999888654 88999987744 4578899999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.+|+++++ ++|+++.+..|
T Consensus 68 ~~P~~~~~-~~g~~~~~~~g 86 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDRSVG 86 (101)
T ss_pred cCCEEEEE-eCCcEeeeecC
Confidence 99999999 78988877666
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=90.69 Aligned_cols=73 Identities=18% Similarity=0.415 Sum_probs=65.5
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++.+ + +.++.|+++.. ..++++|++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~-----------------------~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDEN-----------------------KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTS-----------------------HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhcc-----------------------chhhhccCCC
Confidence 68999999999999999999999999999987 3 88999988744 5589999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+++++ .+|+...+..|
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~g 89 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKRYNG 89 (103)
T ss_dssp SSSEEEEE-ETTEEEEEEES
T ss_pred CCCEEEEE-ECCcEEEEEEC
Confidence 99999999 88888887777
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=103.77 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=61.8
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++.. .++.++|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-----------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-----------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-----------------------HHHHHHcCCC
Confidence 578999999999999999999999999999754 77777766532 4588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++++++ +|+++....|
T Consensus 106 ~~PTl~~f~-~G~~v~~~~G 124 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQYEGG 124 (224)
T ss_pred cCCEEEEEE-CCEEEEeeCC
Confidence 999999995 8988876555
|
|
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=98.66 Aligned_cols=118 Identities=25% Similarity=0.501 Sum_probs=90.5
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC-CEEEEEEECCC---CHHHHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGDE---DDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~---~~~~~~ 87 (350)
.....|+|++ +.+|+++++++++|| ++|+|..+.|| .|...+..|.++++++.+++ +++++.|++|. +++..+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 5667889977 789999999999999 99999999997 79999999999999998754 79999999985 456678
Q ss_pred hHHhcCC--CcccccCChhhHHHHHhhcCCC----------------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMP--WLAVPFSDSETRDKLDELFKVM----------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~----------------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.++ |.... .+.+..+++++.|++. +...++|+|++|+++..
T Consensus 108 ~Y~~~~~~~~~~lt-g~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLT-GSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEE-EEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeE-eCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 8877653 32222 2344456788888753 34589999999999864
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=92.26 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=57.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++++++++....+.+..|+++.+. ..++.+.|++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 369999999999999999999999999998754334777777765321 25688999999
Q ss_pred CccEEEEECCCCC
Q 018808 277 TLPTLVIIGPDGK 289 (350)
Q Consensus 277 ~~P~~~lid~~G~ 289 (350)
++|+++++ ++|+
T Consensus 78 ~~Pt~~lf-~~~~ 89 (114)
T cd02992 78 GYPTLRYF-PPFS 89 (114)
T ss_pred CCCEEEEE-CCCC
Confidence 99999999 5555
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=90.95 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||+.|+.+.+.++++++.+...+ ++.++.++++.. ..+.++|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~-----------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE-----------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch-----------------------HHHHHhCCC
Confidence 67899999999999999999999999999987642 377777776532 568899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++++++. +.++.|
T Consensus 68 ~~~P~~~~~~~~~~-~~~~~g 87 (102)
T TIGR01126 68 SGFPTIKFFPKGKK-PVDYEG 87 (102)
T ss_pred CcCCEEEEecCCCc-ceeecC
Confidence 99999999987776 555555
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=91.23 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=58.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++.. .+.++.|+++... .+++.|++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYE------------------------SLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchH------------------------HHHHHcCC
Confidence 456 99999999999999999999999999854 4888888887553 68999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|+++++.+.|+.+.
T Consensus 72 ~~~Pt~~~~~~g~~~~~ 88 (104)
T cd03004 72 RAYPTIRLYPGNASKYH 88 (104)
T ss_pred CcccEEEEEcCCCCCce
Confidence 99999999965535443
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=110.18 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC--CcceEEEEC
Q 018808 48 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHLVILD 125 (350)
Q Consensus 48 ~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid 125 (350)
....|......+.++.++++.. .+.++.+.. +....+++.+++. ..|.+++++
T Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~-~i~f~~~d~------------------------~~~~~~~~~~~~~~~~~P~~vi~~ 300 (462)
T TIGR01130 246 SLDPFEELRNRFLEAAKKFRGK-FVNFAVADE------------------------EDFGRELEYFGLKAEKFPAVAIQD 300 (462)
T ss_pred CchHHHHHHHHHHHHHHHCCCC-eEEEEEecH------------------------HHhHHHHHHcCCCccCCceEEEEe
Confidence 4445677777777777777531 244444432 2234688889887 699999999
Q ss_pred CCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCC----ceecCCCceeeccc-cCCCEE
Q 018808 126 ENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD----FVISSDGRKISVSD-LEGKTI 200 (350)
Q Consensus 126 ~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~----f~~~~~g~~v~l~~-~~gk~v 200 (350)
.+|...+.. . ....+.+.+.+++........... ....+.|. -+....|..+...- -.++.+
T Consensus 301 ~~~~~~y~~--------~--~~~~~~~~i~~fi~~~~~g~~~~~---~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~v 367 (462)
T TIGR01130 301 LEGNKKYPM--------D--QEEFSSENLEAFVKDFLDGKLKPY---LKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDV 367 (462)
T ss_pred CCcccccCC--------C--cCCCCHHHHHHHHHHHhcCCCCee---eccCCCCccCCCccEEeeCcCHHHHhccCCCeE
Confidence 887322211 0 012456677777665432211111 11122222 12223333332211 147899
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+|+||++||++|+.+.|.+.++++.+++...++.++.|+++.+ ++.. +++.++|+
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------------------------~~~~-~~i~~~Pt 422 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------------------------DVPP-FEVEGFPT 422 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC------------------------ccCC-CCccccCE
Confidence 9999999999999999999999999987312388988887643 1223 88999999
Q ss_pred EEEECCCCC
Q 018808 281 LVIIGPDGK 289 (350)
Q Consensus 281 ~~lid~~G~ 289 (350)
++++.+.++
T Consensus 423 ~~~~~~~~~ 431 (462)
T TIGR01130 423 IKFVPAGKK 431 (462)
T ss_pred EEEEeCCCC
Confidence 999955444
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=88.17 Aligned_cols=68 Identities=28% Similarity=0.504 Sum_probs=55.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+++ ++|+||++||++|+.+.|.|.++++.++.++ .+.+..++++... .+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS------------------------SIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH------------------------hHHhhcC
Confidence 345 9999999999999999999999999996543 4777777765432 6788999
Q ss_pred CCCcceEEEECCCCe
Q 018808 115 VMGIPHLVILDENGK 129 (350)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (350)
+.++|++++++ +|.
T Consensus 70 I~~~Pt~~l~~-~~~ 83 (104)
T cd03000 70 VRGYPTIKLLK-GDL 83 (104)
T ss_pred CccccEEEEEc-CCC
Confidence 99999999994 443
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-11 Score=91.19 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
.|+ ++|+||++||++|+.+.+.+ .++.+.+++ ++.++.|+++.+.+ ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~--------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP--------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH--------------------HHHHHHHH
Confidence 567 99999999999999999887 577777765 48888888765421 12478899
Q ss_pred cCCCCcceEEEECC-CCeEEec
Q 018808 113 FKVMGIPHLVILDE-NGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~-~G~v~~~ 133 (350)
|++.++|+++++++ +|+++.+
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcc
Confidence 99999999999988 8886653
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=93.23 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=60.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc-hhHHHHHHHc-
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYF- 273 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 273 (350)
.|+.++|+|+++|||+|+.+.|.|.++.++.+ +.+..|++|.+.. ..... ..-.++.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 35789999999999999999999999988732 6688888874321 00000 0113445555
Q ss_pred ---CCCCccEEEEECCCCCEEeccchh
Q 018808 274 ---ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 274 ---~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++.++||++++ ++|+.+.+..|.
T Consensus 84 i~~~i~~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 84 IPTSFMGTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred CcccCCCCCEEEEE-eCCeEEEEEeCC
Confidence 45679999999 999999998773
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=92.67 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC----CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ----GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~----~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
.++ ++|+||++||++|+.+.|.+.++++++++. +++.++.|+++... .+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------------------------~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------------------------DIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------------------------HHHH
Confidence 456 999999999999999999999999887532 24788888887654 6899
Q ss_pred hcCCCCcceEEEECCCCeE
Q 018808 112 LFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v 130 (350)
.|+++++|+++++ ++|++
T Consensus 73 ~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred hCCCCcCCEEEEE-eCCcC
Confidence 9999999999999 78873
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-11 Score=109.68 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhh
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
..+..+++++.|+ ++|+||++||++|+.+.|.|.+++++++ +.++.|++|.... ..++..+.+
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~-----------~~fp~~~~d- 218 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPL-----------PGFPNARPD- 218 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCcc-----------ccCCcccCC-
Confidence 4455888899999 9999999999999999999999999983 7899999887642 123333322
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeE
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
..+++.|+|.++|+++|+|++|..
T Consensus 219 -~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 219 -AGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred -HHHHHHcCCCcCCeEEEEECCCCE
Confidence 357889999999999999986543
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=91.41 Aligned_cols=68 Identities=25% Similarity=0.575 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.+| ++|+|+++||++|+.+.|.+.+|..+|++ +.|+.+++|.. ..+++.|++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~------------------------~~~~~~~~V 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDEL------------------------EEVAKEFNV 72 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccC------------------------HhHHHhcCc
Confidence 457 99999999999999999999999999974 78888988872 278999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
..+||++++ ++|+.+.
T Consensus 73 ~~~PTf~f~-k~g~~~~ 88 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVD 88 (106)
T ss_pred eEeeEEEEE-ECCEEEE
Confidence 999999999 7887665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-11 Score=103.69 Aligned_cols=90 Identities=22% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+.+ |+|+||++||++|+.+.|.|..+...|+. .+.++.|++|.++ .++..|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p------------------------~vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEP------------------------MVAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcch------------------------hHHHHhCc
Confidence 445 99999999999999999999999999965 5899999998876 69999999
Q ss_pred CCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHH
Q 018808 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERA 164 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~ 164 (350)
.++|++|++ .+|+.+.. .. .+.....+.+++++....
T Consensus 96 qsIPtV~af-~dGqpVdg--------F~---G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 96 QSIPTVYAF-KDGQPVDG--------FQ---GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CcCCeEEEe-eCCcCccc--------cC---CCCcHHHHHHHHHHhcCh
Confidence 999999999 89987752 11 123556777777654433
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-11 Score=93.05 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=62.8
Q ss_pred CCC-c-EEEEEecCCChhhhhhhHHHH---HHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 36 LKG-K-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 36 ~~g-k-~~v~F~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
-.| | ++|+||++||++|+.+.+.+. ++.+.+.+ ++.++.|+++.+.... .+ ... ......++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~-~~---------~~~-~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVT-DF---------DGE-ALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceee-cc---------CCC-CccHHHHH
Confidence 367 8 999999999999999999874 56666654 4888888887653211 11 100 11345889
Q ss_pred hhcCCCCcceEEEECCC-CeEEec
Q 018808 111 ELFKVMGIPHLVILDEN-GKVLSD 133 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~-G~v~~~ 133 (350)
..|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999999 788764
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=94.94 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=97.1
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCC-CcEEEEEEeCC---CCHHHHHHhhcC
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKG-ESFEIVLISLD---DEEESFKRDLGS 253 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d---~~~~~~~~~~~~ 253 (350)
.| +.+.+|+.++-.++.||++||+|..+.|| .|..++..|.++.+++.+.. ..+.-|+|++| ++.+.+.+|+++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 46 78999999999999999999999999999 79999999999999888663 33447889998 589999999998
Q ss_pred CC--CccccCCchhHHHHHHHcCCCCc--c-------------EEEEECCCCCEEeccch
Q 018808 254 MP--WLALPFKDKSREKLARYFELSTL--P-------------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 254 ~~--~~~~~~~~~~~~~~~~~~~v~~~--P-------------~~~lid~~G~i~~~~~~ 296 (350)
+. .+-++...+.-.++++.|.|.-- | .+|||||+|+.+..+..
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 74 45566777777889999988422 3 46899999999977654
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=91.50 Aligned_cols=69 Identities=32% Similarity=0.648 Sum_probs=60.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.++++. .+.+..++++... .+++.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCCh------------------------hHHHhCCCC
Confidence 56 99999999999999999999999999975 4888899887654 577889999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 75 GIPTLLLF-KNGEVAAT 90 (109)
T ss_pred cCCEEEEE-eCCeEEEE
Confidence 99999999 78988764
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-11 Score=89.52 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.+| ++|.|+++||++|+.+.|.|.++.+++++. +.++.|++|..+ ++++.|++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~------------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVP------------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccH------------------------HHHHhcCc
Confidence 577 999999999999999999999999999642 778888888665 69999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+..|+++++ .+|+-+.
T Consensus 67 ~amPtfvff-kngkh~~ 82 (114)
T cd02986 67 SYIPSTIFF-FNGQHMK 82 (114)
T ss_pred eeCcEEEEE-ECCcEEE
Confidence 999999988 6776443
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=90.69 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=59.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
-++|+|+|+|+++||++|+.+.+.. .++.+.+... +.+|.|+.+..++..+.+. ..+..
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~---------------~~~~~ 74 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYM---------------NAAQA 74 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHH---------------HHHHH
Confidence 4589999999999999999987622 2455555433 7777777765432211111 12334
Q ss_pred HcCCCCccEEEEECCCCCEEeccch
Q 018808 272 YFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.||+.++|+++++|++|++++...+
T Consensus 75 ~~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred hcCCCCCCEEEEECCCCCEEeeeee
Confidence 6799999999999999999988755
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=92.52 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=63.3
Q ss_pred CCCEEEEEEec-------cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 196 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 196 ~gk~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
+|++++|+||| +||++|+.+.|.|.++.++++++ +.++.|++|+.+ ...+...+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 57899999999 99999999999999999998743 889999887532 11122357
Q ss_pred HHHHcCCC-CccEEEEECCCCCEEecc
Q 018808 269 LARYFELS-TLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 269 ~~~~~~v~-~~P~~~lid~~G~i~~~~ 294 (350)
+.+.|+|. ++||+++++..++++...
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchh
Confidence 88999998 999999996655555433
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-11 Score=90.29 Aligned_cols=69 Identities=16% Similarity=0.425 Sum_probs=57.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh-hcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 114 (350)
+|+ ++|.||++||++|+++.|.+.+++++++.+ ++.++.|+++.+.. .++. .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~-----------------------~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQR-----------------------EFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccch-----------------------hhHHhhcC
Confidence 568 999999999999999999999999999854 48899998876321 4565 599
Q ss_pred CCCcceEEEECCCCe
Q 018808 115 VMGIPHLVILDENGK 129 (350)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (350)
+..+|++++++++++
T Consensus 76 v~~~Pti~~f~~~~~ 90 (109)
T cd02993 76 LKSFPTILFFPKNSR 90 (109)
T ss_pred CCcCCEEEEEcCCCC
Confidence 999999999977654
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-11 Score=97.56 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|.||++||++|+.+.|.|.+++.++.. +.++.|+++.. .++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch------------------------hhHHhCCCC
Confidence 35999999999999999999999999999853 88988887631 478899999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++||++++ ++|+++.+..|.
T Consensus 135 ~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CCCEEEEE-ECCEEEEEEech
Confidence 99999999 899999988774
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-11 Score=88.93 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=62.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++++++.||++||++|+.+.|.+.++.++++.. .++.++.++++.. ...++++|++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i~ 74 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGVS 74 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCCC
Confidence 568999999999999999999999999998732 2388888877641 14588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++++++++|+....+.|
T Consensus 75 ~~P~~~~~~~~~~~~~~~~g 94 (105)
T cd02998 75 GFPTLKFFPKGSTEPVKYEG 94 (105)
T ss_pred CcCEEEEEeCCCCCccccCC
Confidence 99999999877666555555
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-11 Score=89.56 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHh-cCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
++++++|.||++||++|+.+.+.+.++.+.++ ... +.++.|+++.. ..+.++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-----------------------~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGK--VVVAKVDCTAN-----------------------NDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCc--eEEEEeeccch-----------------------HHHHHhCC
Confidence 45689999999999999999999999999985 222 88888887642 56899999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+..+|++++++++|+...++.|
T Consensus 69 i~~~Pt~~~~~~~~~~~~~~~g 90 (101)
T cd02961 69 VRGYPTIKLFPNGSKEPVKYEG 90 (101)
T ss_pred CCCCCEEEEEcCCCcccccCCC
Confidence 9999999999887766666555
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=88.41 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++++++... +.++.++++.. .+++++|++.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-----------------------~~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-----------------------QSLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-----------------------HHHHHHCCCC
Confidence 467999999999999999999999999998754 88888877643 4578999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++++++.+.+....+.|
T Consensus 72 ~~P~~~~~~~~~~~~~~~~g 91 (103)
T cd03001 72 GFPTIKVFGAGKNSPQDYQG 91 (103)
T ss_pred ccCEEEEECCCCcceeecCC
Confidence 99999999544243333433
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=88.23 Aligned_cols=69 Identities=25% Similarity=0.425 Sum_probs=57.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 36 LKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 36 ~~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++|+++|+||++||++|+.+.|.+.++++.++.. ++.+..++++... .+++.|++
T Consensus 15 ~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------------------~~~~~~~i 69 (101)
T cd02994 15 LEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP------------------------GLSGRFFV 69 (101)
T ss_pred hCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH------------------------hHHHHcCC
Confidence 3445889999999999999999999999887543 4888888876553 58889999
Q ss_pred CCcceEEEECCCCeE
Q 018808 116 MGIPHLVILDENGKV 130 (350)
Q Consensus 116 ~~~P~~~lid~~G~v 130 (350)
.++|+++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999998 78875
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=87.98 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=59.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|.||++||++|+.+.|.+.++.+.+++++.+.++.++++.+. ...+++.|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----------------------~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE----------------------HDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc----------------------cHHHHHhCCC
Confidence 566 99999999999999999999999999975445778878776521 1378899999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+++|+++++ ++|+++.
T Consensus 74 ~~~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYF-ENGKFVE 89 (104)
T ss_pred ccccEEEEE-eCCCeeE
Confidence 999999888 5777654
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=89.36 Aligned_cols=68 Identities=29% Similarity=0.485 Sum_probs=58.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|.||++||++|+.+.|.+.++++++.. .+.++.++++.+. ...+++.|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~----------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDK----------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccc----------------------cHHHHHHcCC
Confidence 467 99999999999999999999999999864 4888889887632 1378999999
Q ss_pred CCcceEEEECCCC
Q 018808 116 MGIPHLVILDENG 128 (350)
Q Consensus 116 ~~~P~~~lid~~G 128 (350)
.++|+++++++.+
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997666
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=87.54 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=61.9
Q ss_pred CCc-EEEEEecCC--ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 37 ~gk-~~v~F~~~~--C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
.|. ++|.||++| ||.|+.+.|.|.++.+++++ .+.++.++++... .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~------------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQ------------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCH------------------------HHHHHc
Confidence 444 999999997 99999999999999999976 4788899888775 699999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
+|.++||++++ ++|+++.+
T Consensus 80 ~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEE
Confidence 99999999999 79998874
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=87.69 Aligned_cols=68 Identities=24% Similarity=0.557 Sum_probs=57.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
++|+||++||++|+.+.|.+.+++++++.. ..+.++.++++... .+++.|++.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~v~~~ 74 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR------------------------ELCSEFQVRGY 74 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh------------------------hhHhhcCCCcC
Confidence 999999999999999999999999999762 25888888876543 68889999999
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
|+++++ ++|+.+.
T Consensus 75 Pt~~~~-~~g~~~~ 87 (102)
T cd03005 75 PTLLLF-KDGEKVD 87 (102)
T ss_pred CEEEEE-eCCCeee
Confidence 999999 6776554
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=88.17 Aligned_cols=69 Identities=26% Similarity=0.533 Sum_probs=59.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|.||++||+.|+.+.+.+.++.+.++..+++.++.++++... .+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK------------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH------------------------HHHHhCCC
Confidence 677 99999999999999999999999999976535778777775543 68899999
Q ss_pred CCcceEEEECCCCe
Q 018808 116 MGIPHLVILDENGK 129 (350)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (350)
.++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999987775
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=91.94 Aligned_cols=70 Identities=31% Similarity=0.701 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.++++... .+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAER------------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCH------------------------HHHHhcCC
Confidence 467 99999999999999999999999998865 4888888776553 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999998 58988764
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=90.47 Aligned_cols=75 Identities=31% Similarity=0.601 Sum_probs=55.3
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+..++| ++|+||++||++|+.+.|.+.+....... +..++.|.++.+.+ .+...
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~-----------------------~~~~~ 69 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEE-----------------------PKDEE 69 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCC-----------------------chhhh
Confidence 345778 99999999999999999999887665432 23466666664432 22335
Q ss_pred cCCCC--cceEEEECCCCeEEec
Q 018808 113 FKVMG--IPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~--~P~~~lid~~G~v~~~ 133 (350)
|++.+ +|+++++|++|+++.+
T Consensus 70 ~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 70 FSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred cccCCCccceEEEECCCCCCchh
Confidence 67665 9999999999998764
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=87.72 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++... .+++.|++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~------------------------~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAP------------------------FLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCH------------------------HHHHHCCC
Confidence 346 9999999999999999999999999885 3788889887664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 79988875
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-11 Score=90.96 Aligned_cols=91 Identities=27% Similarity=0.486 Sum_probs=61.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHH---HhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYN---ELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~---~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+|| +++.||++|||+|+.+.+.+....+ .+++ ++.++.+++++..+....+....+. ..-......+.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~ 77 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQ----KNVRLSNKELAQR 77 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCH----SSCHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccc----hhhhHHHHHHHHH
Confidence 577 9999999999999999888875433 3322 4788888887665544444433221 0112344589999
Q ss_pred cCCCCcceEEEECCCCeEEec
Q 018808 113 FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~ 133 (350)
|++.++|+++++|++|+++.+
T Consensus 78 ~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 78 YGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp TT--SSSEEEECTTTSCEEEE
T ss_pred cCCCccCEEEEEcCCCCEEEE
Confidence 999999999999999998763
|
... |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=85.98 Aligned_cols=69 Identities=28% Similarity=0.609 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.+.|.++.+++. ++.++.++++... .+++.|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~------------------------~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELS------------------------EVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchH------------------------HHHHHCCC
Confidence 356 9999999999999999999999999765 3778888776432 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 79988764
|
|
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=90.67 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=94.1
Q ss_pred hhhhcccccCCc-eecCCCceeeccccCCC-EEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 170 LRSVLTSHSRDF-VISSDGRKISVSDLEGK-TIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 170 ~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk-~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
+.-.+|..+||| +.|.+|+.++|.++.++ +|+++||. ...|-|.+....++.-|++++..+ .+|++++.|++ ..
T Consensus 61 ~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s-~s 137 (211)
T KOG0855|consen 61 LKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDS-AS 137 (211)
T ss_pred eeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCch-HH
Confidence 345678999999 89999999999999875 88888773 466789999999999999999988 99999999954 34
Q ss_pred HHHhhcCCCCccccCCchhHHHHHHHcCCCCcc-------EEEEECCCCC
Q 018808 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLP-------TLVIIGPDGK 289 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P-------~~~lid~~G~ 289 (350)
.++|..+.. +++..++|+.+++.+.+|+...| ..+++|..|.
T Consensus 138 qKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 138 QKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred HHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 455555443 77788999999999999986544 6788877653
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=88.16 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=95.3
Q ss_pred cccccCCc----eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 174 LTSHSRDF----VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 174 ~~~~~p~f----~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
+..++|+| +.+..-+.++|++++||+|+++||.- +--.|..++-.+.+.+.+|+..+ .+|+++|+|+ .....
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS-~fshl 82 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDS-VFSHL 82 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccc-hhhhh
Confidence 34556777 23555678999999999999999844 55689999999999999999988 9999999994 33334
Q ss_pred Hhhc---CC---CCccccCCchhHHHHHHHcCC------CCccEEEEECCCCCEEeccch
Q 018808 249 RDLG---SM---PWLALPFKDKSREKLARYFEL------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~---~~---~~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++ +. +.+++|+++|...++++.||+ .++-.+++||++|.+++....
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITIN 142 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeec
Confidence 4443 32 346799999999999999998 246689999999999886554
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-10 Score=84.24 Aligned_cols=68 Identities=32% Similarity=0.718 Sum_probs=60.2
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.+.+.+ ++.++.|+++... .+++.|++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENK------------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSH------------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccc------------------------hhhhccCCC
Confidence 56 99999999999999999999999999986 4889999887664 799999999
Q ss_pred CcceEEEECCCCeEEe
Q 018808 117 GIPHLVILDENGKVLS 132 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~ 132 (350)
++|+++++ .+|+...
T Consensus 71 ~~Pt~~~~-~~g~~~~ 85 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVK 85 (103)
T ss_dssp SSSEEEEE-ETTEEEE
T ss_pred CCCEEEEE-ECCcEEE
Confidence 99999999 6776654
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=84.64 Aligned_cols=70 Identities=24% Similarity=0.596 Sum_probs=60.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++++||++||+.|+.+.|.+.++.+++++ ++.++.++.+... +++..|++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~------------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQ------------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 456 99999999999999999999999999875 4888888877654 67888999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 66 ~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 66 MGTPTVQFF-KDKELVKE 82 (97)
T ss_pred eeccEEEEE-ECCeEEEE
Confidence 999999999 57888764
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=86.36 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=53.2
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++.++++||++||++|+.+.|.|.++.+++ +. +.+..|+.|.. .+++++|++.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~-----------------------~~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED-----------------------KEKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC-----------------------HHHHHHcCCC
Confidence 346889999999999999999999998776 22 88888887743 4588999999
Q ss_pred CccEEEEECC
Q 018808 277 TLPTLVIIGP 286 (350)
Q Consensus 277 ~~P~~~lid~ 286 (350)
++|++++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999954
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=87.53 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=58.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ ...++.|++|..+ +++..|++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~------------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVP------------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCH------------------------HHHHHcCc
Confidence 456 99999999999999999999999999975 3778889988775 68999999
Q ss_pred CCcceEEEECCCCe-EEec
Q 018808 116 MGIPHLVILDENGK-VLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~-v~~~ 133 (350)
++.|+++++=++|. .+.+
T Consensus 76 ~~~~t~~~ffk~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFFRNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEEECCeEEEEE
Confidence 98777773337887 5554
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=84.47 Aligned_cols=69 Identities=23% Similarity=0.544 Sum_probs=58.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++||++|+.+.+.|.++.+++.. ++.++.++.+... .+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~------------------------~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELP------------------------EISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCH------------------------HHHHhcCCc
Confidence 57 99999999999999999999999999732 5788888665432 688999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 58988764
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=92.55 Aligned_cols=119 Identities=24% Similarity=0.428 Sum_probs=95.4
Q ss_pred hhhcCccCCceec-c-CCc---eeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--H
Q 018808 13 SLLSSSARDFLIR-S-NGD---QVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--D 83 (350)
Q Consensus 13 ~~~g~~~p~f~~~-~-~g~---~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~ 83 (350)
..+|+++|+|+.+ . .|. .++++++.|| ++++||- ..-+.|..+...|+++|.+|.+++ .+++++++|+. .
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g-~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG-VEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC-CEEEEEecCcHHHH
Confidence 4679999999885 3 553 9999999889 8888876 577999999999999999999996 99999999874 4
Q ss_pred HHHHhHHhcCCC---cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMPW---LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
..|++...+.+. ..+|.. +|.+.++++.||+. ..-.++|||++|++...
T Consensus 82 ~aW~~~~~~~~gi~~i~~Pmi-aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMI-ADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHhcHHhcCCccceecceE-EcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 467777555433 556654 56667999999985 34489999999998763
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-10 Score=85.47 Aligned_cols=71 Identities=24% Similarity=0.518 Sum_probs=58.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|.||++||++|+.+.|.+.++.+.++..+.+.++.++++... ..+++.|++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----------------------~~~~~~~~i 73 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-----------------------KDLAKKYGV 73 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-----------------------hhhHHhCCC
Confidence 356 99999999999999999999999999974435888888876621 278999999
Q ss_pred CCcceEEEECCCCeE
Q 018808 116 MGIPHLVILDENGKV 130 (350)
Q Consensus 116 ~~~P~~~lid~~G~v 130 (350)
.++|+++++++.|+.
T Consensus 74 ~~~P~~~~~~~~~~~ 88 (105)
T cd02998 74 SGFPTLKFFPKGSTE 88 (105)
T ss_pred CCcCEEEEEeCCCCC
Confidence 999999999766543
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=89.04 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=57.6
Q ss_pred EEEEEecCCChh--hh--hhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 40 IGLYFSASWCGP--CQ--RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 40 ~~v~F~~~~C~~--C~--~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|++||+.||++ |+ .+.|.+.++++++-+.+++.++.|++|... .+++.|+|
T Consensus 30 vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~------------------------~La~~~~I 85 (120)
T cd03065 30 CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA------------------------KVAKKLGL 85 (120)
T ss_pred EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH------------------------HHHHHcCC
Confidence 888999999976 99 888989998888832225899999998775 79999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+++||++++ ++|+++.
T Consensus 86 ~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 86 DEEDSIYVF-KDDEVIE 101 (120)
T ss_pred ccccEEEEE-ECCEEEE
Confidence 999999999 7898765
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-10 Score=87.58 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=57.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++.. .++..|++.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-------------------------HHHHhcCCC
Confidence 46 9999999999999999999999999985 367777776432 578889999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+.+.+
T Consensus 76 ~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVY-KNGELIDN 91 (113)
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 78988875
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.6e-10 Score=94.21 Aligned_cols=69 Identities=23% Similarity=0.484 Sum_probs=58.2
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.+++++++. .+.+..++++... .+++.|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~------------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRAL------------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccH------------------------HHHHHcCCC
Confidence 46 99999999999999999999999999975 4777777665442 689999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|++++++ +|+++.+
T Consensus 106 ~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCCEEEEEE-CCEEEEe
Confidence 999999995 7877653
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-10 Score=86.48 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=55.5
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++ ++|+||++||++|+.+.|.+.++.+++++. +.+.+..++++.+. ...+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~----------------------~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE----------------------NVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh----------------------hHHHHHhCCC
Confidence 36 999999999999999999999999998653 24777777765332 1378899999
Q ss_pred CCcceEEEECCCC
Q 018808 116 MGIPHLVILDENG 128 (350)
Q Consensus 116 ~~~P~~~lid~~G 128 (350)
+++|+++++.+..
T Consensus 77 ~~~Pt~~lf~~~~ 89 (114)
T cd02992 77 TGYPTLRYFPPFS 89 (114)
T ss_pred CCCCEEEEECCCC
Confidence 9999999995443
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=83.61 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=54.8
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++.++|+||++||++|+.+.|.+.++.+.+++. .++.+..|+++. .++...+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~------------------------~~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA------------------------NDVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc------------------------hhhhhhccCC
Confidence 578999999999999999999999999998763 238888887763 2356678889
Q ss_pred CccEEEEECCCCC
Q 018808 277 TLPTLVIIGPDGK 289 (350)
Q Consensus 277 ~~P~~~lid~~G~ 289 (350)
++|+++++. +|+
T Consensus 73 ~~Pt~~~~~-~~~ 84 (104)
T cd02995 73 GFPTILFFP-AGD 84 (104)
T ss_pred CCCEEEEEc-CCC
Confidence 999999994 454
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-10 Score=83.96 Aligned_cols=71 Identities=25% Similarity=0.492 Sum_probs=59.3
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+++ ++|.||++||++|+.+.+.+.++.+.++.+..+.++.++++... .+++.|+
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------------~~~~~~~ 68 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN------------------------DLCSEYG 68 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH------------------------HHHHhCC
Confidence 3556 99999999999999999999999999952225888888876543 7899999
Q ss_pred CCCcceEEEECCCCeE
Q 018808 115 VMGIPHLVILDENGKV 130 (350)
Q Consensus 115 v~~~P~~~lid~~G~v 130 (350)
+.++|++++++++|..
T Consensus 69 i~~~Pt~~~~~~~~~~ 84 (101)
T cd02961 69 VRGYPTIKLFPNGSKE 84 (101)
T ss_pred CCCCCEEEEEcCCCcc
Confidence 9999999999877543
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-10 Score=94.29 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=63.9
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
-.+|.|+|+|.|+||+||+...|.+..+..+|+. ..++.|.+|. .+..+.-+|
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~-----------------------c~~taa~~g 71 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDE-----------------------CRGTAATNG 71 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHH-----------------------hhchhhhcC
Confidence 3468999999999999999999999999999965 6688887762 244677899
Q ss_pred CCCccEEEEECCCCCEEeccchh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.++||++++ ++|+-+.+..|.
T Consensus 72 V~amPTFiff-~ng~kid~~qGA 93 (288)
T KOG0908|consen 72 VNAMPTFIFF-RNGVKIDQIQGA 93 (288)
T ss_pred cccCceEEEE-ecCeEeeeecCC
Confidence 9999999999 999888887764
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-10 Score=93.61 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|.||++||++|+.+.|.|.+++.++.. +.|+.|+++. ....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~--------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQ--------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHH--------------------------hHhhCCCC
Confidence 46999999999999999999999999999853 7888887651 24689999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+||++++ ++|+++.+..|..
T Consensus 152 ~lPTlliy-k~G~~v~~ivG~~ 172 (192)
T cd02988 152 NLPTILVY-RNGDIVKQFIGLL 172 (192)
T ss_pred CCCEEEEE-ECCEEEEEEeCch
Confidence 99999999 9999999988843
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=80.74 Aligned_cols=68 Identities=31% Similarity=0.674 Sum_probs=58.8
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.+.|.++.++++. ++.++.++++... .+++.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENP------------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHHcCCC
Confidence 45 99999999999999999999999988864 4889999877653 678899999
Q ss_pred CcceEEEECCCCeEEe
Q 018808 117 GIPHLVILDENGKVLS 132 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~ 132 (350)
.+|+++++ ++|+++.
T Consensus 68 ~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVD 82 (101)
T ss_pred cCCEEEEE-eCCcEee
Confidence 99999999 6787654
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=77.01 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCcc
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 279 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 279 (350)
.+..||++||++|+...+.|.+++++++.. +.++.|+.+.+ .++.++||+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN-----------------------PQKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC-----------------------HHHHHHcCCccCC
Confidence 467899999999999999999999988644 88888887644 3467889999999
Q ss_pred EEEEECCCCCE
Q 018808 280 TLVIIGPDGKT 290 (350)
Q Consensus 280 ~~~lid~~G~i 290 (350)
++++ +|+.
T Consensus 56 t~~~---~g~~ 63 (82)
T TIGR00411 56 AIVI---NGDV 63 (82)
T ss_pred EEEE---CCEE
Confidence 9886 5654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=107.02 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=62.6
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
..+||+|+|+||++||++|+.+.+.+ .++.++++ + +.++.|+++++.+ ...++.
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~--~~~v~vDvt~~~~-------------------~~~~l~ 527 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--D--TVLLQADVTANNA-------------------EDVALL 527 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--C--CEEEEEECCCCCh-------------------hhHHHH
Confidence 34589999999999999999988764 56666664 2 7788887764321 236789
Q ss_pred HHcCCCCccEEEEECCCCCEE--eccch
Q 018808 271 RYFELSTLPTLVIIGPDGKTL--HSNVA 296 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~~G~i~--~~~~~ 296 (350)
++|++.++|+++++|++|+++ .+..|
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i~~~r~~G 555 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEIPDARVTG 555 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCcccccccC
Confidence 999999999999999999985 45555
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=80.92 Aligned_cols=64 Identities=23% Similarity=0.465 Sum_probs=54.9
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++||++|+.+.|.|.++++++.. .+.++.++++... .+++.|+++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~------------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQ------------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchH------------------------HHHHHCCCC
Confidence 45 99999999999999999999999999865 4788888876543 688999999
Q ss_pred CcceEEEECCC
Q 018808 117 GIPHLVILDEN 127 (350)
Q Consensus 117 ~~P~~~lid~~ 127 (350)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999644
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=78.93 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=60.4
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
++++|.||++||++|+.+.+.+.++.++ ..+ +.++.|+++.. .++.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~--~~~~~i~~~~~-----------------------~~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPK--VKFVKVDVDEN-----------------------PELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCC--ceEEEEECCCC-----------------------hhHHHhcCccc
Confidence 7899999999999999999999999887 223 88998888753 45788999999
Q ss_pred ccEEEEECCCCCEEeccch
Q 018808 278 LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~~ 296 (350)
+|+++++ ++|+++....|
T Consensus 64 ~P~~~~~-~~g~~~~~~~g 81 (93)
T cd02947 64 IPTFLFF-KNGKEVDRVVG 81 (93)
T ss_pred ccEEEEE-ECCEEEEEEec
Confidence 9999999 67887777766
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-09 Score=81.45 Aligned_cols=79 Identities=19% Similarity=0.413 Sum_probs=55.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC-
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK- 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 114 (350)
.|+ ++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ....+...-.++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcCC
Confidence 456 899999999999999999999998873 35688888774320 00000011124555554
Q ss_pred ---CCCcceEEEECCCCeEEec
Q 018808 115 ---VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 ---v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+.+.+
T Consensus 85 ~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 85 PTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred cccCCCCCEEEEE-eCCeEEEE
Confidence 5669999999 89988874
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=84.05 Aligned_cols=78 Identities=22% Similarity=0.502 Sum_probs=61.3
Q ss_pred CCCc-EEEEEec-------CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 36 LKGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 36 ~~gk-~~v~F~~-------~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.+|+ ++|+||+ +||++|+.+.|.|.++.++++. ++.++.|+++.... | .+.+.
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~----------w-------~d~~~ 79 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPY----------W-------RDPNN 79 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCccc----------c-------cCcch
Confidence 3578 9999999 9999999999999999999874 47889998876431 0 11224
Q ss_pred HHHhhcCCC-CcceEEEECCCCeEEe
Q 018808 108 KLDELFKVM-GIPHLVILDENGKVLS 132 (350)
Q Consensus 108 ~l~~~~~v~-~~P~~~lid~~G~v~~ 132 (350)
.++..|++. ++||+++++..++++.
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecc
Confidence 788899998 9999999965555554
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=81.17 Aligned_cols=66 Identities=23% Similarity=0.543 Sum_probs=54.6
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.++.+.++...++.+..++++.. .++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-------------------------hhhhhccCC
Confidence 57 9999999999999999999999999997643588888877643 356678889
Q ss_pred CcceEEEECCCC
Q 018808 117 GIPHLVILDENG 128 (350)
Q Consensus 117 ~~P~~~lid~~G 128 (350)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995444
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=100.97 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=58.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+++++||+||++||++|+.+.|.+.++++++++.+ +.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc---------------------HHHHHHcC
Confidence 367899999999999999999999999999998766 8899998884321 22346899
Q ss_pred CCCccEEEEECCCCC
Q 018808 275 LSTLPTLVIIGPDGK 289 (350)
Q Consensus 275 v~~~P~~~lid~~G~ 289 (350)
|.++||++++ ++|.
T Consensus 426 I~~~PTii~F-k~g~ 439 (463)
T TIGR00424 426 LGSFPTILFF-PKHS 439 (463)
T ss_pred CCccceEEEE-ECCC
Confidence 9999999999 5553
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=89.16 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=58.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
+. ++|+||++||++|+.+.|.|.+|+++++ .+.|+.|+++.. .++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-------------------------hhHHhCCCC
Confidence 35 9999999999999999999999999985 388888887632 477889999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 135 ~vPTllly-k~G~~v~~ 150 (175)
T cd02987 135 ALPALLVY-KGGELIGN 150 (175)
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 79998864
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-09 Score=82.12 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=89.5
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHH
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 249 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~ 249 (350)
.-+| ..+.+|+.++++.++||++||.-.|+.|+.-......|+.++++|+++| ++|++..+++ +.++...
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHH
Confidence 3456 5799999999999999999999999999998878889999999999999 9999999973 5567777
Q ss_pred hhcCCCCccccCCch------hHHHHHHHc----------CCCCccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDK------SREKLARYF----------ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~------~~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.......+|+... ....+.+-+ .|..--+-||||++|+++.|+..
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 776444444444321 112222222 23444578999999999999876
|
|
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-09 Score=81.54 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=52.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++|+||++||++|+.+.|.|.++...+ + .+.+..++.+..+ .+++.|++.++|
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~------------------------~l~~~~~v~~vP 77 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDK------------------------EKAEKYGVERVP 77 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCH------------------------HHHHHcCCCcCC
Confidence 889999999999999999999998876 2 4888888887654 688999999999
Q ss_pred eEEEECC
Q 018808 120 HLVILDE 126 (350)
Q Consensus 120 ~~~lid~ 126 (350)
++++++.
T Consensus 78 t~~i~~~ 84 (113)
T cd02975 78 TTIFLQD 84 (113)
T ss_pred EEEEEeC
Confidence 9999964
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=101.01 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=72.4
Q ss_pred ceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCcccc
Q 018808 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALP 260 (350)
Q Consensus 181 f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 260 (350)
.+..++...+...-..+..++|.|||+||+.|+...|.+.+.++.+++.++.+.+.-|.+...
T Consensus 26 ~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----------------- 88 (493)
T KOG0190|consen 26 DVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----------------- 88 (493)
T ss_pred ceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----------------
Confidence 333333333443344567899999999999999999999999999999876688888765422
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++.+|+|.++||+-++ ++|+....+.|
T Consensus 89 ------~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G 117 (493)
T KOG0190|consen 89 ------SDLASKYEVRGYPTLKIF-RNGRSAQDYNG 117 (493)
T ss_pred ------hhhHhhhcCCCCCeEEEE-ecCCcceeccC
Confidence 678999999999999999 99997555555
|
|
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=86.28 Aligned_cols=112 Identities=25% Similarity=0.545 Sum_probs=87.7
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhc-cCC-CEEEEEEECCCC---HHHHHhHHh-
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELS-RQG-DFEVIFVSGDED---DEAFKGYFS- 91 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~-~~~-~~~~v~i~~d~~---~~~~~~~~~- 91 (350)
+|++ +.+|+.+++.+++|| ++|+|..+.|| .|..+...|..+.+++. ..+ +++++.|++|.+ ++-.+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7877 689999999999999 99999999998 79999999999999998 333 799999999754 555666666
Q ss_pred c-CC-CcccccCChhhHHHHHhhcCCC---------------CcceEEEECCCCeEEec
Q 018808 92 K-MP-WLAVPFSDSETRDKLDELFKVM---------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~-~~-~~~~~~~~~~~~~~l~~~~~v~---------------~~P~~~lid~~G~v~~~ 133 (350)
. .+ |..+... .+..+++++.|++. +...++++|++|++...
T Consensus 129 ~~~~~~~~ltg~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 2 12 3333333 66677888888875 23478899999998875
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=81.28 Aligned_cols=97 Identities=10% Similarity=0.180 Sum_probs=63.3
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHH---HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
-++|+|+|+|++.||++|+.+...+- ++.+...+ . +.+|.+..|.+.. +. .
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~--Fv~V~l~~d~td~------------~~---~-------- 74 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-D--FIMLNLVHETTDK------------NL---S-------- 74 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-C--eEEEEEEeccCCC------------Cc---C--------
Confidence 35899999999999999999987542 23333322 2 5444554442210 00 0
Q ss_pred HcCCCCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHH
Q 018808 272 YFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR 322 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 322 (350)
..| .++|+++++|++|+++.+..|.. +...|-|.+.+++.|.+.-+
T Consensus 75 ~~g-~~vPtivFld~~g~vi~~i~Gy~----~~~~~~y~~~~~~~~~~~m~ 120 (130)
T cd02960 75 PDG-QYVPRIMFVDPSLTVRADITGRY----SNRLYTYEPADIPLLIENMK 120 (130)
T ss_pred ccC-cccCeEEEECCCCCCcccccccc----cCccceeCcCcHHHHHHHHH
Confidence 022 47999999999999999988754 23456677777777765443
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-09 Score=73.67 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=47.4
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
.|.||++|||+|+.+.|.+.++.+++..+ ++++-|+ + .+.+..||+.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v~--~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKVT--D------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEeC--C------------------------HHHHHHcCCCcCCE
Confidence 37899999999999999999999998654 6776553 1 11256799999999
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ ||+++
T Consensus 53 i~i---~G~~~ 60 (76)
T TIGR00412 53 VAV---DGELV 60 (76)
T ss_pred EEE---CCEEE
Confidence 998 88888
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-09 Score=101.77 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=64.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.|||+||++|+.+.|.+.++++.+.+.+.++.++.|+++.. .+++++|+|
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 73 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----------------------KDLAQKYGV 73 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----------------------HHHHHhCCC
Confidence 467899999999999999999999999999887655588888887743 458999999
Q ss_pred CCccEEEEECCCCCE-Eeccch
Q 018808 276 STLPTLVIIGPDGKT-LHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i-~~~~~~ 296 (350)
.++|+++++ ++|+. +..+.|
T Consensus 74 ~~~Pt~~~~-~~g~~~~~~~~g 94 (462)
T TIGR01130 74 SGYPTLKIF-RNGEDSVSDYNG 94 (462)
T ss_pred ccccEEEEE-eCCccceeEecC
Confidence 999999999 67776 555544
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=77.21 Aligned_cols=83 Identities=25% Similarity=0.215 Sum_probs=57.0
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+.-++| ++|+|+++||+.|+.+.+.. .++.+.+.+ ++.+|.++.+...+..+.+ ....
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~----------------~~~~ 72 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIY----------------MNAA 72 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHH----------------HHHH
Confidence 344678 99999999999999887632 355555543 3677777665543211111 1122
Q ss_pred HhhcCCCCcceEEEECCCCeEEecC
Q 018808 110 DELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
...|++.++|+++++|++|++++..
T Consensus 73 ~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 73 QAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HHhcCCCCCCEEEEECCCCCEEeee
Confidence 3367999999999999999999864
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-09 Score=96.94 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=56.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 274 (350)
+++++||+||++||++|+.+.|.+.++++++...+ +.++.|++|... .++++ .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc----------------------hHHHHhhCC
Confidence 57899999999999999999999999999998766 999999887321 33554 699
Q ss_pred CCCccEEEEECC
Q 018808 275 LSTLPTLVIIGP 286 (350)
Q Consensus 275 v~~~P~~~lid~ 286 (350)
|.++||++++.+
T Consensus 420 I~~~PTil~f~~ 431 (457)
T PLN02309 420 LGSFPTILLFPK 431 (457)
T ss_pred CceeeEEEEEeC
Confidence 999999999943
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-09 Score=100.71 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=62.3
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+++.++|.||++||++|+++.|.+.++++.+...+.++.+..|+++.. .+++++|+
T Consensus 47 ~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----------------------~~l~~~~~ 103 (477)
T PTZ00102 47 TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----------------------MELAQEFG 103 (477)
T ss_pred hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----------------------HHHHHhcC
Confidence 3578999999999999999999999999988876544578888877643 56899999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|++++++. |+.+ .+.|
T Consensus 104 i~~~Pt~~~~~~-g~~~-~y~g 123 (477)
T PTZ00102 104 VRGYPTIKFFNK-GNPV-NYSG 123 (477)
T ss_pred CCcccEEEEEEC-CceE-EecC
Confidence 999999999954 5544 4444
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=77.42 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=99.2
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+...++++++.||..+|..+ +-..|.|......+++...++.+ ..++.||+| -+-+..+|
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~D-LPFAq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMD-LPFAQKRF 93 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCC-ChhHHhhh
Confidence 578999999 788999999999999986555554 55889999999999998888765 789999999 77788999
Q ss_pred hcCCCCccccCCchh-HHHHHHHcCC--CCcc-------EEEEECCCCCEEeccchhh
Q 018808 251 LGSMPWLALPFKDKS-REKLARYFEL--STLP-------TLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~v--~~~P-------~~~lid~~G~i~~~~~~~~ 298 (350)
+...+.-++..++|. +.++.++||+ ...| +.+++|.+|+|++......
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence 998876667777775 4568899996 3343 7899999999999887643
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=72.46 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.||++||++|+...|.|.++. ++++-|+.|.. .+++++|++.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-----------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-----------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-----------------------HHHHHHcCCceeCe
Confidence 78999999999999999886541 44555554432 56899999999999
Q ss_pred EEEECCCCCEEeccch
Q 018808 281 LVIIGPDGKTLHSNVA 296 (350)
Q Consensus 281 ~~lid~~G~i~~~~~~ 296 (350)
++ +|+.+.+..|
T Consensus 50 ~~----~g~~~~~~~G 61 (75)
T PHA02125 50 LV----NTSTLDRFTG 61 (75)
T ss_pred EE----CCEEEEEEeC
Confidence 86 5777766655
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-09 Score=87.00 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=56.2
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
..++++|||+|||+|+.+.+.|.++.+++++ +.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d-------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA-------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc-------------------------------cCccc
Confidence 4689999999999999999999999999854 777777422 89999
Q ss_pred ccEEEEECCCCCEEeccchhh
Q 018808 278 LPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~~~~ 298 (350)
+|+++++ ++|+++.+..|..
T Consensus 63 vPtfv~~-~~g~~i~r~~G~~ 82 (204)
T PTZ00062 63 YGVFEFY-QNSQLINSLEGCN 82 (204)
T ss_pred ceEEEEE-ECCEEEeeeeCCC
Confidence 9999999 8999999988743
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=75.45 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=59.4
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
+.-++|+++|+|+++||++|..+...+ .++.+.+.+. +.++.++.++. ...++
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~---------------------e~~~~ 68 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSS---------------------EGQRF 68 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCc---------------------cHHHH
Confidence 334589999999999999999986532 2244444432 55555544421 22568
Q ss_pred HHHcCCCCccEEEEECC-CCCEEeccchh
Q 018808 270 ARYFELSTLPTLVIIGP-DGKTLHSNVAE 297 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~-~G~i~~~~~~~ 297 (350)
++.|++.++|+++++|+ +|+++.+..|.
T Consensus 69 ~~~~~~~~~P~~~~i~~~~g~~l~~~~G~ 97 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVLKVWSGN 97 (114)
T ss_pred HHHhCccCCCeEEEEeCccCcEeEEEcCC
Confidence 89999999999999999 89999998884
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=84.04 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=88.2
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC--CEEEEEEECCC---CHHHHHhHHhc
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFSK 92 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~---~~~~~~~~~~~ 92 (350)
+|.+ +.+|+.++.+++.|| ++++|-.+.|| .|..++-.|.....++.++. .+.-|.|++|. +.+.++++.++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 6766 789999999999999 99999999998 79999999988888887653 34468888886 56677788777
Q ss_pred CCCcccc-cCChhhHHHHHhhcCCCCcc---------------eEEEECCCCeEEecC
Q 018808 93 MPWLAVP-FSDSETRDKLDELFKVMGIP---------------HLVILDENGKVLSDG 134 (350)
Q Consensus 93 ~~~~~~~-~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~~ 134 (350)
+.-..+. ....+.-+.+|+.|.|...+ .+||+||+|+.+...
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh
Confidence 5422222 33456667899999885332 678999999988753
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-09 Score=86.58 Aligned_cols=73 Identities=30% Similarity=0.591 Sum_probs=59.4
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++.-.+| ++|+|+++||.+|+++.|.|..|..+|+. ..|+.|++|.-+ ..+.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~------------------------~taa 68 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECR------------------------GTAA 68 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhh------------------------chhh
Confidence 3344568 99999999999999999999999999964 567777766443 5677
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+||..+||++++ .+|.-+.+
T Consensus 69 ~~gV~amPTFiff-~ng~kid~ 89 (288)
T KOG0908|consen 69 TNGVNAMPTFIFF-RNGVKIDQ 89 (288)
T ss_pred hcCcccCceEEEE-ecCeEeee
Confidence 8999999999999 77766553
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=96.55 Aligned_cols=68 Identities=18% Similarity=0.385 Sum_probs=56.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.+++++++..+ +.++.|++|.+.. ...+..|+|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~-v~~~kVdvD~~~~----------------------~~~~~~~~I 426 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG-VKVAKFRADGDQK----------------------EFAKQELQL 426 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC-cEEEEEECCCCcc----------------------HHHHHHcCC
Confidence 567 9999999999999999999999999997653 8888898886531 123467999
Q ss_pred CCcceEEEECCC
Q 018808 116 MGIPHLVILDEN 127 (350)
Q Consensus 116 ~~~P~~~lid~~ 127 (350)
.++||++++.++
T Consensus 427 ~~~PTii~Fk~g 438 (463)
T TIGR00424 427 GSFPTILFFPKH 438 (463)
T ss_pred CccceEEEEECC
Confidence 999999999433
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=68.94 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=48.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|+++|||+|+...+.|.++.+... + +++..++.+++ .++++.||+.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~id~~~~-----------------------~~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--N--ISAEMIDAAEF-----------------------PDLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--c--eEEEEEEcccC-----------------------HhHHHHcCCcccCE
Confidence 678999999999999999998866532 2 78888877643 44788999999999
Q ss_pred EEEECCCCCEEec
Q 018808 281 LVIIGPDGKTLHS 293 (350)
Q Consensus 281 ~~lid~~G~i~~~ 293 (350)
+++ +|+++..
T Consensus 56 i~i---~~~~~~~ 65 (67)
T cd02973 56 IVI---NGKVEFV 65 (67)
T ss_pred EEE---CCEEEEe
Confidence 865 3565543
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-08 Score=70.95 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=50.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+.-||++||++|+...|.|.++++.++. ++.++.|+.+.+. .+++.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~vPt 56 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENP------------------------QKAMEYGIMAVPA 56 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCH------------------------HHHHHcCCccCCE
Confidence 5679999999999999999999998864 4888888877554 4677899999999
Q ss_pred EEEECCCCeE
Q 018808 121 LVILDENGKV 130 (350)
Q Consensus 121 ~~lid~~G~v 130 (350)
+++ +|+.
T Consensus 57 ~~~---~g~~ 63 (82)
T TIGR00411 57 IVI---NGDV 63 (82)
T ss_pred EEE---CCEE
Confidence 986 5654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=86.37 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=56.3
Q ss_pred CCCEEEEEEec---cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~---~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
++...++.|.+ +||++|+.+.|.+.++.+++.. +++..+.+|.+ ...+++++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~---------------------~~~~l~~~ 72 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTP---------------------EDKEEAEK 72 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCc---------------------ccHHHHHH
Confidence 34444555776 9999999999999999988842 55656666522 12568999
Q ss_pred cCCCCccEEEEECCCCCEEe-ccch
Q 018808 273 FELSTLPTLVIIGPDGKTLH-SNVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~-~~~~ 296 (350)
|+|.++||++++ ++|+.+. ++.|
T Consensus 73 ~~V~~~Pt~~~f-~~g~~~~~~~~G 96 (215)
T TIGR02187 73 YGVERVPTTIIL-EEGKDGGIRYTG 96 (215)
T ss_pred cCCCccCEEEEE-eCCeeeEEEEee
Confidence 999999999999 5787763 6666
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=84.84 Aligned_cols=65 Identities=11% Similarity=0.246 Sum_probs=55.8
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ +||+||++||++|+.+.|.|.+|+++|. .+.|+.|+++. ....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~---------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQ---------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHH---------------------------hHhhCCCC
Confidence 46 9999999999999999999999999986 37888887641 23569999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 152 ~lPTlliy-k~G~~v~~ 167 (192)
T cd02988 152 NLPTILVY-RNGDIVKQ 167 (192)
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 89998875
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-08 Score=71.54 Aligned_cols=66 Identities=35% Similarity=0.707 Sum_probs=55.9
Q ss_pred c-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC
Q 018808 39 K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (350)
Q Consensus 39 k-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (350)
+ ++|.||++||+.|..+.+.+.++.+. . . ++.++.++++... .+++.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~-~~~~~~i~~~~~~------------------------~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-P-KVKFVKVDVDENP------------------------ELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C-C-CceEEEEECCCCh------------------------hHHHhcCccc
Confidence 6 99999999999999999999999887 2 2 5889999887643 6888899999
Q ss_pred cceEEEECCCCeEEe
Q 018808 118 IPHLVILDENGKVLS 132 (350)
Q Consensus 118 ~P~~~lid~~G~v~~ 132 (350)
+|+++++ ++|+++.
T Consensus 64 ~P~~~~~-~~g~~~~ 77 (93)
T cd02947 64 IPTFLFF-KNGKEVD 77 (93)
T ss_pred ccEEEEE-ECCEEEE
Confidence 9999999 5676554
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=74.05 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=64.1
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHHhh
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKRDL 251 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 251 (350)
+| ..+.+|+.++++.++||++||.-.|+.|+.-. ....|++++++|+++| ++|+++.+++ +.++.+.++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHHhccccCCCHHHHHHHH
Confidence 45 57899999999999999999999999999888 8889999999999998 9999999974 455555555
Q ss_pred cCCCCccccC
Q 018808 252 GSMPWLALPF 261 (350)
Q Consensus 252 ~~~~~~~~~~ 261 (350)
....+.+||+
T Consensus 80 ~~~~~~~F~v 89 (108)
T PF00255_consen 80 KEKFGVTFPV 89 (108)
T ss_dssp CHCHT-SSEE
T ss_pred HhccCCcccc
Confidence 5432234443
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=71.92 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=58.1
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.++++++-+..|+++||++|+...+.+.++.+.+.+ +.+..+..++. .+++++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~~~~-----------------------~e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDGALF-----------------------QDEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEhHhC-----------------------HHHHHH
Confidence 467788899999999999999999999998877642 77777776643 457899
Q ss_pred cCCCCccEEEEECCCCCEEec
Q 018808 273 FELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~ 293 (350)
|||.++|++++ +|+++.+
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 6888775
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7e-08 Score=75.43 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=83.9
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHHh
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKG 88 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~~ 88 (350)
+.-+|.+ +.+|+.++|++++|| ++|.-.|+.|..-.+ ...|+.||++|+++| +.+++..|+ .+.+++.+
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~G-f~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKG-FEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCC-cEEEeccccccccCCCCCHHHHHH
Confidence 4567877 689999999999999 999999999998884 557999999999997 999999986 36778999
Q ss_pred HHhcCCCcccccCC------hhhH---HHHHhhc-------CCCCcceEEEECCCCeEEecC
Q 018808 89 YFSKMPWLAVPFSD------SETR---DKLDELF-------KVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 89 ~~~~~~~~~~~~~~------~~~~---~~l~~~~-------~v~~~P~~~lid~~G~v~~~~ 134 (350)
|+..-=...||..+ .+.+ +.|...- .|.+==+-+|||++|+|+.|.
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 98753223333221 1111 1222222 123333889999999999984
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-08 Score=73.31 Aligned_cols=68 Identities=35% Similarity=0.534 Sum_probs=58.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++++++.|+++||++|..+.+.+.+++++++++ +.++.|+.|+. ..+++.||+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-----------------------~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-----------------------GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999999865 88988877642 4588999999
Q ss_pred --CccEEEEECCC-CCE
Q 018808 277 --TLPTLVIIGPD-GKT 290 (350)
Q Consensus 277 --~~P~~~lid~~-G~i 290 (350)
++|++++++.. |+.
T Consensus 66 ~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 66 EEDLPVIAIINLSDGKK 82 (103)
T ss_pred hhhCCEEEEEecccccc
Confidence 99999999663 543
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=73.70 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=92.2
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|+++|+|++ ..+.+.+++.++.|| ++..|-+-.-|.|......|++...++. +..++.|+.| -+-...+|+
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~---~~~Vl~IS~D-LPFAq~RfC 94 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG---NTVVLCISMD-LPFAQKRFC 94 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC---CcEEEEEeCC-ChhHHhhhh
Confidence 45999999988 689999999999999 5555666678999999999999888876 4789999987 445678999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC--Cc-------ceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM--GI-------PHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-------P~~~lid~~G~v~~~ 133 (350)
...+..+.-..+.-....+.+.||+. .- -..+++|.+|+|+|.
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYS 146 (158)
T ss_pred hhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEE
Confidence 98887765544444445788999962 23 378999999999985
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-08 Score=93.05 Aligned_cols=66 Identities=17% Similarity=0.391 Sum_probs=55.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh-hcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 114 (350)
.++ ++|+||++||++|+.+.|.|.++.+++... ++.++.++++.... .++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~-----------------------~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQK-----------------------EFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcch-----------------------HHHHhhCC
Confidence 567 999999999999999999999999999765 48899998873321 5665 699
Q ss_pred CCCcceEEEECC
Q 018808 115 VMGIPHLVILDE 126 (350)
Q Consensus 115 v~~~P~~~lid~ 126 (350)
|.++||++++.+
T Consensus 420 I~~~PTil~f~~ 431 (457)
T PLN02309 420 LGSFPTILLFPK 431 (457)
T ss_pred CceeeEEEEEeC
Confidence 999999999943
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=94.68 Aligned_cols=75 Identities=24% Similarity=0.502 Sum_probs=59.0
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+..+|| ++|+||++||++|+.+.+.. .++.++++ ++.++.++++++.+ .++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~--------------------~~~~l 526 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNA--------------------EDVAL 526 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCCh--------------------hhHHH
Confidence 345689 99999999999999987764 56666664 37777787765422 23478
Q ss_pred HhhcCCCCcceEEEECCCCeEE
Q 018808 110 DELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.++|++.++|+++++|++|+++
T Consensus 527 ~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 527 LKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHcCCCCCCEEEEECCCCCCc
Confidence 8999999999999999999874
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=65.55 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=49.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++||++|....+.|.++.+... .+.+..++.+... ++++.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~------------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFP------------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCH------------------------hHHHHcCCcccCE
Confidence 678999999999999999998866542 4788888776553 5778899999999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|++++
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 876 456655
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-08 Score=75.71 Aligned_cols=119 Identities=21% Similarity=0.296 Sum_probs=86.5
Q ss_pred cCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHH
Q 018808 16 SSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAF 86 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~ 86 (350)
-.+.-+|+. +.+|+.++|+.++|| ++|.-.|+.|..-......|..|+++|++++ +++++..|+ ...+++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G-l~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG-LEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC-eEEEEeccccccCcCCCCcHHH
Confidence 455678987 789999999999999 9999999999999977889999999999997 999999986 245677
Q ss_pred HhHHhcCCCcccccCChh-----hHHHHHhhc----------CCCCcceEEEECCCCeEEecCC
Q 018808 87 KGYFSKMPWLAVPFSDSE-----TRDKLDELF----------KVMGIPHLVILDENGKVLSDGG 135 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-----~~~~l~~~~----------~v~~~P~~~lid~~G~v~~~~~ 135 (350)
..++.......++..+.- ....+.+.+ .|.+==+-+|+|++|.++.|.+
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 777764332222222110 111222211 2233338899999999999854
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=67.05 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=47.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
-|.||++||++|..+.|.+.++.++++. ++.++.|+ +. ..+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~------------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DM------------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CH------------------------HHHHHcCCCcCCE
Confidence 4789999999999999999999999864 36665554 22 2245699999999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ ||+++.
T Consensus 53 i~i---~G~~~~ 61 (76)
T TIGR00412 53 VAV---DGELVI 61 (76)
T ss_pred EEE---CCEEEE
Confidence 999 787764
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=74.36 Aligned_cols=114 Identities=21% Similarity=0.343 Sum_probs=83.4
Q ss_pred hhhhcCccCCcee-ccCCceeecCCCCCc--EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 12 QSLLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.--+|+.+|+|++ +.+|+.++|.++.|+ ++++||-. ..|-|....=.|.+-|+++++.+ .++++++.|+. ...+
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~-aeV~GlS~D~s-~sqK 139 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG-AEVIGLSGDDS-ASQK 139 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC-ceEEeeccCch-HHHH
Confidence 3456999999988 789999999999998 55555543 45789888888999999998775 89999998754 4455
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcc-------eEEEECCCCe
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIP-------HLVILDENGK 129 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G~ 129 (350)
.|..++...-... .|..+++.+.+|+...| .++++++.|.
T Consensus 140 aF~sKqnlPYhLL--SDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 140 AFASKQNLPYHLL--SDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred HhhhhccCCeeee--cCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 6655554322223 34445899999987655 6777766653
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=70.67 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+.+.+||.|+|+| |+|.+ .|...+++.++......+.+.-|.+++-. ...+.+++++|+|
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------------------~~~~~~L~~~y~I 76 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------------------EKLNMELGERYKL 76 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------------------chhhHHHHHHhCC
Confidence 4578999999955 44444 36666776666543333778888775310 0122679999999
Q ss_pred C--CccEEEEECCCCC
Q 018808 276 S--TLPTLVIIGPDGK 289 (350)
Q Consensus 276 ~--~~P~~~lid~~G~ 289 (350)
. ++||++++ ++|.
T Consensus 77 ~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 77 DKESYPVIYLF-HGGD 91 (116)
T ss_pred CcCCCCEEEEE-eCCC
Confidence 9 99999999 6664
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-07 Score=79.70 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=66.5
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+.+++=|++|+.+.|++|..+.|.|..+.++++ +.|+.||+|...- ..||.... +..+++++
T Consensus 117 ~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~l 179 (215)
T PF13728_consen 117 QLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKRL 179 (215)
T ss_pred HHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCC-----------cCCCCCCC-CHHHHHHc
Confidence 3446678999999999999999999999999984 9999999995321 23333322 45688899
Q ss_pred CCCCccEEEEECCCC-CEEeccch
Q 018808 274 ELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
||..+|++||+++++ ++.-...|
T Consensus 180 ~v~~~Pal~Lv~~~~~~~~pv~~G 203 (215)
T PF13728_consen 180 GVKVTPALFLVNPNTKKWYPVSQG 203 (215)
T ss_pred CCCcCCEEEEEECCCCeEEEEeee
Confidence 999999999999988 44433444
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=68.12 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=58.0
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++++++. .+..|+++||++|....+.+.++.+.+. ++.+..++.+... +++.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~------------------------e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQ------------------------DEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCH------------------------HHHH
Confidence 3467788 8888999999999999999999887764 3778888776554 6888
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.|+|.++|++++ +|+++..
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999975 6888774
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-06 Score=85.22 Aligned_cols=176 Identities=15% Similarity=0.180 Sum_probs=107.3
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+.+++. .++.|+...|..|......|.++. .+.++ +.+......++ .++++.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~--i~~~~~~~~~~------------------------~~~~~~ 414 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK--LNSEAVNRGEE------------------------PESETL 414 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc--EEEEEeccccc------------------------hhhHhh
Confidence 346667 788888888999988877777765 44443 55544443333 267888
Q ss_pred cCCCCcceEEEECCCCe---EEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCce
Q 018808 113 FKVMGIPHLVILDENGK---VLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRK 189 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~---v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~ 189 (350)
|++...|++.+++.+|+ +.+. |. |.- ..+..|+...... +...+. ++.+.
T Consensus 415 ~~v~~~P~~~i~~~~~~~~~i~f~---------g~---P~G-~Ef~s~i~~i~~~----------~~~~~~----l~~~~ 467 (555)
T TIGR03143 415 PKITKLPTVALLDDDGNYTGLKFH---------GV---PSG-HELNSFILALYNA----------AGPGQP----LGEEL 467 (555)
T ss_pred cCCCcCCEEEEEeCCCcccceEEE---------ec---Ccc-HhHHHHHHHHHHh----------cCCCCC----CCHHH
Confidence 99999999999976653 4332 21 222 2233333221111 000000 01111
Q ss_pred e-eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 190 I-SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 190 v-~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
. .+..+.++..+-.|.+++||+|+.....++++..+.++ +..-.|....- .+
T Consensus 468 ~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~----i~~~~i~~~~~-----------------------~~ 520 (555)
T TIGR03143 468 LEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN----VEAEMIDVSHF-----------------------PD 520 (555)
T ss_pred HHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC----ceEEEEECccc-----------------------HH
Confidence 1 22345566667788999999999988888888777542 44444433321 56
Q ss_pred HHHHcCCCCccEEEEECCCCCEEec
Q 018808 269 LARYFELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 269 ~~~~~~v~~~P~~~lid~~G~i~~~ 293 (350)
++++|+|.++|++++ ||+++..
T Consensus 521 ~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 521 LKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HHHhCCceecCEEEE---CCEEEEe
Confidence 889999999999887 4566544
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=65.58 Aligned_cols=57 Identities=32% Similarity=0.640 Sum_probs=42.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++.||++||++|+.+.|.|.++ .+.++.|+.+... ++++.|++.++|
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--------~~~~~~vd~~~~~------------------------~l~~~~~v~~~P 48 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--------EYTYVDVDTDEGV------------------------ELTAKHHIRSLP 48 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--------hheEEeeeCCCCH------------------------HHHHHcCCceeC
Confidence 37899999999999999988654 1345556554432 689999999999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 49 T~~----~g~~~~ 57 (75)
T PHA02125 49 TLV----NTSTLD 57 (75)
T ss_pred eEE----CCEEEE
Confidence 987 455443
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.5e-07 Score=70.01 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=47.7
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.-+|| ++|+|++.||++|+.+...+ .++.+..++ ++.+|.+..|.+.. ...
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~-----------------------~~~ 74 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDK-----------------------NLS 74 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCC-----------------------CcC
Confidence 34678 99999999999999887765 244444433 35555555543321 000
Q ss_pred hhcCCCCcceEEEECCCCeEEec
Q 018808 111 ELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+ .++|+++++|++|+++.+
T Consensus 75 -~~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 75 -PDG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred -ccC-cccCeEEEECCCCCCccc
Confidence 022 468999999999998875
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-07 Score=69.16 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=55.7
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
|+ +++.|+++||++|..+.+.|.+++++++. ++.++.|+++... .++..|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~------------------------~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFG------------------------RHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhH------------------------HHHHHcCCC
Confidence 77 99999999999999999999999999975 5889988776543 688899999
Q ss_pred --CcceEEEECC
Q 018808 117 --GIPHLVILDE 126 (350)
Q Consensus 117 --~~P~~~lid~ 126 (350)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999975
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-07 Score=70.78 Aligned_cols=82 Identities=13% Similarity=0.297 Sum_probs=56.9
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
..+.-++|.++|+|+++||++|..+...+ .++.+.+.. . +-++.++++.+ ...
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~--fv~~~~dv~~~---------------------eg~ 76 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-N--FIFWQVDVDTS---------------------EGQ 76 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-C--EEEEEecCCCh---------------------hHH
Confidence 33445689999999999999999987532 123333332 2 55555554432 226
Q ss_pred HHHHHcCCCCccEEEEECCCC-----CEEeccch
Q 018808 268 KLARYFELSTLPTLVIIGPDG-----KTLHSNVA 296 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~~G-----~i~~~~~~ 296 (350)
++++.|++.++|+++++|++| +++.+.-|
T Consensus 77 ~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G 110 (122)
T smart00594 77 RVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEG 110 (122)
T ss_pred HHHHhcCcCCCCEEEEEecCCCceeEEEeccccC
Confidence 789999999999999999998 35555544
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-07 Score=78.19 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=63.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
...|+|+|+|.||+..+...|.+.+.+..+++...+-++|.-.+|.+.+ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 4689999999999999999999999998888775445566656554332 5689999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.+||+-|+ ++|.+..+...
T Consensus 72 KyPTlKvf-rnG~~~~rEYR 90 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREYR 90 (375)
T ss_pred cCceeeee-eccchhhhhhc
Confidence 99999999 99998886543
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-07 Score=78.31 Aligned_cols=88 Identities=27% Similarity=0.496 Sum_probs=66.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
++|.|||.||+.++...|.+.+.+++++++. +-++|+-.+|++.+ ..|+.+|.|..+
T Consensus 16 vfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 16 VFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHINKY 73 (375)
T ss_pred EeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhccccC
Confidence 9999999999999999999999999987653 34566666666644 379999999999
Q ss_pred ceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHH
Q 018808 119 PHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (350)
Q Consensus 119 P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~ 160 (350)
||+-++ .+|.+.. ++|.+. .+.+.+.++++.
T Consensus 74 PTlKvf-rnG~~~~-------rEYRg~---RsVeaL~efi~k 104 (375)
T KOG0912|consen 74 PTLKVF-RNGEMMK-------REYRGQ---RSVEALIEFIEK 104 (375)
T ss_pred ceeeee-eccchhh-------hhhccc---hhHHHHHHHHHH
Confidence 999999 7887665 234332 355555555543
|
|
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=65.67 Aligned_cols=59 Identities=29% Similarity=0.461 Sum_probs=53.8
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
+|++ +.+|+.++|+.++|| ++|.-.|+.|+.-. ....|++|+++|++++ +++++..++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g-l~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG-LEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT-EEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC-eEEEeeehHH
Confidence 6777 689999999999999 99999999999988 7889999999999886 9999999864
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.3e-07 Score=64.25 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=33.1
Q ss_pred cCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDD 242 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~ 242 (350)
..||+++|+|++.||++|+.+...+ .++.+.+.++ +..+.|..+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~ 62 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDD 62 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCC
Confidence 3589999999999999999998766 3344434433 7777777653
|
... |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=75.87 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+.+++-|++|+.+.|++|.++.|.|+.+.++++ +.++.||+|.... ..||.... +..+++++
T Consensus 147 ~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 209 (256)
T TIGR02739 147 QLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLI-----------PGLPNSRS-DSGQAQHL 209 (256)
T ss_pred HHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCccC-ChHHHHhc
Confidence 3455688999999999999999999999999986 8899999995321 23443322 35578899
Q ss_pred CCCCccEEEEECCCC-CEEeccch
Q 018808 274 ELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
|+..+|+++|++++. +..-...|
T Consensus 210 ~v~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 210 GVKYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred CCccCceEEEEECCCCcEEEEeec
Confidence 999999999999994 44434444
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-07 Score=71.83 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=47.6
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH-
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY- 272 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 272 (350)
.+..+.-++.|..+|||.|...+|.|.++.+..+. +++=.+..|++.+ +..+
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~rd~~~e-----------------------l~~~~ 90 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILRDENKE-----------------------LMDQY 90 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-HHHHHH-----------------------HTTTT
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEecCChh-----------------------HHHHH
Confidence 34556788999999999999999999999988642 5555555553322 2332
Q ss_pred --cCCCCccEEEEECCCCCEEeccch
Q 018808 273 --FELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 273 --~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.|...+|+++++|.+|+.+.++..
T Consensus 91 lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 91 LTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp TT-SS--SSEEEEE-TT--EEEEEES
T ss_pred HhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 467889999999999999988765
|
|
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-06 Score=67.47 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=95.3
Q ss_pred hcccccCCceecCCCceeeccccCCCEEEEEEe--ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--CHHHHH
Q 018808 173 VLTSHSRDFVISSDGRKISVSDLEGKTIGLYFS--MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--EEESFK 248 (350)
Q Consensus 173 ~~~~~~p~f~~~~~g~~v~l~~~~gk~vlv~f~--~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~--~~~~~~ 248 (350)
.+|..+|+|..+..-..+++.++.|.-+.|-|. +...|.|..++..+..++.+|..++ ++.++.|+|+ +...|.
T Consensus 7 ~lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 7 RLGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWI 84 (224)
T ss_pred cccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHH
Confidence 368889999766666679999999987777777 4588999999999999999999998 9999999994 444454
Q ss_pred Hhh----cCCC-CccccCCchhHHHHHHHcCC--------C----CccEEEEECCCCCEEeccc
Q 018808 249 RDL----GSMP-WLALPFKDKSREKLARYFEL--------S----TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 249 ~~~----~~~~-~~~~~~~~~~~~~~~~~~~v--------~----~~P~~~lid~~G~i~~~~~ 295 (350)
+-+ ...+ -+.+|+..|..++++-.|++ . ..-.+++||++-++.-...
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l 148 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL 148 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE
Confidence 333 3222 37888899999999988875 1 2457899999999886654
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=66.60 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+.-++| ++|+|+++||+.|..+.... .++.+.+++ ++.++.++.++.. ...+
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e----------------------~~~~ 68 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSE----------------------GQRF 68 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCcc----------------------HHHH
Confidence 344678 99999999999999887643 345555543 2445555444321 1368
Q ss_pred HhhcCCCCcceEEEECC-CCeEEec
Q 018808 110 DELFKVMGIPHLVILDE-NGKVLSD 133 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~-~G~v~~~ 133 (350)
+..|++.++|+++++|+ +|+++.+
T Consensus 69 ~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHhCccCCCeEEEEeCccCcEeEE
Confidence 88999999999999999 8988874
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=67.93 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=87.4
Q ss_pred hhcCccCCceec--cCCc--eeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HHH
Q 018808 14 LLSSSARDFLIR--SNGD--QVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~--~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~~ 85 (350)
.+..++|+|.-. .+|. .++|++++|| +++.||. .+--.|..+.-.+.+.+.+|++.+ -+++++++|+. .-.
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n-~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN-TEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC-CeEEEEeccchhhhhh
Confidence 446677999443 4554 7999999999 9999985 456689999999999999998874 99999999864 234
Q ss_pred HHhHHhcCC---CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEe
Q 018808 86 FKGYFSKMP---WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLS 132 (350)
Q Consensus 86 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~ 132 (350)
|...-.+.+ -..+|.. +|.+.++++.||+. .+--++|+|++|.+..
T Consensus 84 W~ntprk~gGlg~~~iPll-sD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLL-SDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred HhcCchhhCCcCcccccee-eccchhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence 444444433 2446654 56677999999983 4558899999998865
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=73.87 Aligned_cols=86 Identities=12% Similarity=0.206 Sum_probs=65.7
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
++.+++-|++|+.+.||+|.++.|.|+.+.++++ +.|+.||+|.... ..||.... +...++++
T Consensus 140 ~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 202 (248)
T PRK13703 140 KLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQRL 202 (248)
T ss_pred HHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCCcc-ChhHHHhc
Confidence 3445678899999999999999999999999986 8899999995321 23444322 23456899
Q ss_pred CCCCccEEEEECCCC-CEEeccch
Q 018808 274 ELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
|+..+|+++|++++. +..-...|
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred CCcccceEEEEECCCCcEEEEeec
Confidence 999999999999996 55444445
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.7e-07 Score=77.35 Aligned_cols=68 Identities=25% Similarity=0.461 Sum_probs=51.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
++|+||++||.||++.-|.+.+.-..+++-+ .+++-. +|.++ -..++..|+++++
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGK--lDaT~----------------------f~aiAnefgiqGY 101 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGK--LDATR----------------------FPAIANEFGIQGY 101 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcCCceeecc--ccccc----------------------chhhHhhhccCCC
Confidence 9999999999999999999999888887654 233322 33332 1378899999999
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
||+.++ ++|-++.
T Consensus 102 PTIk~~-kgd~a~d 114 (468)
T KOG4277|consen 102 PTIKFF-KGDHAID 114 (468)
T ss_pred ceEEEe-cCCeeee
Confidence 999999 5554443
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=73.45 Aligned_cols=82 Identities=28% Similarity=0.327 Sum_probs=64.5
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
+..+.++ -+++|+.+.|++|..+.|.|..+.+++ .+.++.|++|...- ..++-... +..+++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~-----------~~fp~~~~--~~g~~~ 177 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPI-----------PSFPNPRP--DPGQAK 177 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCC-----------cCCCCCCC--CHHHHH
Confidence 4456677 899999999999999999999999998 38999999986532 22332222 346888
Q ss_pred hcCCCCcceEEEECCCCeEE
Q 018808 112 LFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~ 131 (350)
.+++..+|+++|+++++...
T Consensus 178 ~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 178 RLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred HcCCCcCCEEEEEECCCCeE
Confidence 99999999999999887433
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=65.05 Aligned_cols=73 Identities=33% Similarity=0.513 Sum_probs=55.0
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
....+.++++++.||++||++|+.+.|.+.++.+++... +.++.++..+ ....+.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~----------------------~~~~~~ 80 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDD----------------------ENPDLA 80 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCC----------------------CChHHH
Confidence 333444889999999999999999999999999999762 7888888751 114456
Q ss_pred HHcC--CCCccEEEEECCCCC
Q 018808 271 RYFE--LSTLPTLVIIGPDGK 289 (350)
Q Consensus 271 ~~~~--v~~~P~~~lid~~G~ 289 (350)
..|+ +..+|+++++ .+|+
T Consensus 81 ~~~~~~~~~~p~~~~~-~~~~ 100 (127)
T COG0526 81 AEFGVAVRSIPTLLLF-KDGK 100 (127)
T ss_pred HHHhhhhccCCeEEEE-eCcc
Confidence 6666 7788988765 4443
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.8e-07 Score=76.36 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=56.6
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
..++|.|||+||..|++..|.+.++-.++++.|..+++-...+. .| ..++..|||++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT----------------~f-------~aiAnefgiqG 100 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT----------------RF-------PAIANEFGIQG 100 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc----------------cc-------hhhHhhhccCC
Confidence 48999999999999999999999998888887744444332221 11 45899999999
Q ss_pred ccEEEEECCCCCEEeccc
Q 018808 278 LPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~ 295 (350)
+||+.++ ++|..+....
T Consensus 101 YPTIk~~-kgd~a~dYRG 117 (468)
T KOG4277|consen 101 YPTIKFF-KGDHAIDYRG 117 (468)
T ss_pred CceEEEe-cCCeeeecCC
Confidence 9999999 6666554433
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=56.03 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=48.4
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.||++||++|....+.+.++ +....+ +.++.++++...... .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 4789999999999999999988 333444 999999988543321 1145788999999
Q ss_pred EEEECCC
Q 018808 281 LVIIGPD 287 (350)
Q Consensus 281 ~~lid~~ 287 (350)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999776
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-06 Score=64.55 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=44.5
Q ss_pred CCc-EEEEEec--CCCh---hhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 37 KGK-IGLYFSA--SWCG---PCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 37 ~gk-~~v~F~~--~~C~---~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
+.+ ++|.|++ +||. +|..+.|.+..... .+.+..|.+++..+ ..+..|+
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~-------------------~~~~~L~ 71 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGE-------------------KLNMELG 71 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccc-------------------hhhHHHH
Confidence 445 9999999 7777 55555554432211 36677777754211 1234899
Q ss_pred hhcCCC--CcceEEEECCCC
Q 018808 111 ELFKVM--GIPHLVILDENG 128 (350)
Q Consensus 111 ~~~~v~--~~P~~~lid~~G 128 (350)
..|+|. ++||+.++ ++|
T Consensus 72 ~~y~I~~~gyPTl~lF-~~g 90 (116)
T cd03007 72 ERYKLDKESYPVIYLF-HGG 90 (116)
T ss_pred HHhCCCcCCCCEEEEE-eCC
Confidence 999999 99999999 455
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-06 Score=82.79 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=55.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
.+|.||++||++|+++.|.++.+++.+.+.. -+.+..|+|.+. .+..+|+.|+|+++
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~----------------------~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE----------------------ENVKLCREFSVSGY 117 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch----------------------hhhhhHhhcCCCCC
Confidence 8999999999999999999999999998764 355555666433 34589999999999
Q ss_pred ceEEEECCC
Q 018808 119 PHLVILDEN 127 (350)
Q Consensus 119 P~~~lid~~ 127 (350)
|++..+.++
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999766
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=62.91 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=53.2
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhH
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 106 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (350)
+..+.-++| ++|+|+++||+.|..+...+ .++.+.+++ ++.++.+++++.. .
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~e----------------------g 75 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSE----------------------G 75 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChh----------------------H
Confidence 344445788 99999999999999887764 344455543 2444445444332 1
Q ss_pred HHHHhhcCCCCcceEEEECCCC
Q 018808 107 DKLDELFKVMGIPHLVILDENG 128 (350)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G 128 (350)
..++..|+++++|++++++++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 3789999999999999999997
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.6e-06 Score=77.29 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=57.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++.++|.||++||++|+++.|.+.++...+++. +.+..|.++.. .++++.|+|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~vd~~~~-----------------------~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAVDCDEH-----------------------KDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEeCchhh-----------------------HHHHHhcCC
Confidence 3568999999999999999999999999999874 77777766633 679999999
Q ss_pred CCccEEEEECCC
Q 018808 276 STLPTLVIIGPD 287 (350)
Q Consensus 276 ~~~P~~~lid~~ 287 (350)
.++||+.++.+.
T Consensus 100 ~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 100 QGFPTLKVFRPG 111 (383)
T ss_pred ccCcEEEEEcCC
Confidence 999999999665
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-06 Score=72.57 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=65.0
Q ss_pred ecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 32 ~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.++.+.++ -+++||.+.|++|..+.|.|+.+.++| .+.++.|++|...- ..+|....+ ..++
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 206 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVIPISVDGTLI-----------PGLPNSRSD--SGQA 206 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-----------CCCCCccCC--hHHH
Confidence 34456677 899999999999999999999999998 38999999987631 223333233 3678
Q ss_pred hhcCCCCcceEEEECCCCeEE
Q 018808 111 ELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~v~ 131 (350)
..+++..+|+++|++++.+..
T Consensus 207 ~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhcCCccCceEEEEECCCCcE
Confidence 889999999999999885433
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.5e-06 Score=59.65 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=32.5
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
-+|| ++|+|+++||+.|+.+...+ .++.+.+.+ ++..+.|..+..
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~ 63 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDE 63 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTH
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCC
Confidence 4678 99999999999999887776 344443543 467777776443
|
... |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.2e-06 Score=71.49 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=63.1
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++++.++ -+++||.+.|++|..+.|.|+.+.+++ .+.++.|++|.... ..+|....+. ..+.
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v~~VS~DG~~~-----------p~fp~~~~d~--gqa~ 200 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSVIPVSVDGVIN-----------PLLPDSRTDQ--GQAQ 200 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-----------CCCCCCccCh--hHHH
Confidence 4456667 899999999999999999999999998 48899999987531 2343333333 4567
Q ss_pred hcCCCCcceEEEECCCCe
Q 018808 112 LFKVMGIPHLVILDENGK 129 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~ 129 (350)
.+++..+|.++|++++..
T Consensus 201 ~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 201 RLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcCCcccceEEEEECCCC
Confidence 899999999999998863
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=52.04 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=47.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.||.+||++|....+.+.++ ..... ++.++.++++...+.. .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK-GVKFEAVDVDEDPALE---------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC-CcEEEEEEcCCChHHh---------------------hHHHhCCCccccE
Confidence 4789999999999999999988 33333 5889999887665311 1134688899999
Q ss_pred EEEECCC
Q 018808 121 LVILDEN 127 (350)
Q Consensus 121 ~~lid~~ 127 (350)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999765
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=62.46 Aligned_cols=116 Identities=18% Similarity=0.353 Sum_probs=87.5
Q ss_pred hcCccCCceeccCCceeecCCCCCc-EEEEE--ecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HH----H
Q 018808 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYF--SASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DE----A 85 (350)
Q Consensus 15 ~g~~~p~f~~~~~g~~~~l~~~~gk-~~v~F--~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~----~ 85 (350)
+|+.+|+|..+.+-..+.+.|+.|. +.|-| -+...|.|..++..++.+.-+|.+++ ++.+++++|+- .. +
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn-vKlialS~d~vesH~~Wi~D 86 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN-VKLIALSVDDVESHKDWIKD 86 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC-ceEEEeehhhHHHHHHHHHH
Confidence 6999999999998899999999998 55555 45678999999999999999999985 99999999853 22 3
Q ss_pred HHhHHhcCCC-cccccCChhhHHHHHhhcCC--------CC----cceEEEECCCCeEEe
Q 018808 86 FKGYFSKMPW-LAVPFSDSETRDKLDELFKV--------MG----IPHLVILDENGKVLS 132 (350)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v--------~~----~P~~~lid~~G~v~~ 132 (350)
++.+.+..+. ..+|+. .|.+++++-.|+. .+ .-.++++|++-++.-
T Consensus 87 Iks~~~~~~~~~~yPII-aD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirL 145 (224)
T KOG0854|consen 87 IKSYAKVKNHSVPYPII-ADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRL 145 (224)
T ss_pred HHHHHhccCCCCCCCee-cCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEE
Confidence 4444454443 444544 5666788877764 12 347889999887654
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-05 Score=57.65 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=59.7
Q ss_pred EEEEEEecc--CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 199 TIGLYFSMS--SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 199 ~vlv~f~~~--~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
..+|+|-+. .+|-+....-.|.++.++|.+.. +.++.|+.|.+ .+++.+|||.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~-----------------------~~LA~~fgV~ 90 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQS-----------------------EAIGDRFGVF 90 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCC-----------------------HHHHHHcCCc
Confidence 455555433 67888888889999999996433 88999998865 5699999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++||++++ ++|+++.+..|.
T Consensus 91 siPTLl~F-kdGk~v~~i~G~ 110 (132)
T PRK11509 91 RFPATLVF-TGGNYRGVLNGI 110 (132)
T ss_pred cCCEEEEE-ECCEEEEEEeCc
Confidence 99999999 999999998883
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=63.65 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=43.0
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHH-H--HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPR-L--VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
..+.-.+|+++|.++++||.+|..|... + .++.+-++.. +--|.|..+..+. +...+. .
T Consensus 31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pd-id~~y~--------------~ 92 (163)
T PF03190_consen 31 EKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPD-IDKIYM--------------N 92 (163)
T ss_dssp HHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HH-HHHHHH--------------H
T ss_pred HHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCcc-HHHHHH--------------H
Confidence 3344468999999999999999988741 1 1233333332 4444444443222 211111 1
Q ss_pred HHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 268 KLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
......|..++|++++++|+|+.+...
T Consensus 93 ~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 112223788999999999999999764
|
; PDB: 3IRA_A. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=58.57 Aligned_cols=69 Identities=39% Similarity=0.699 Sum_probs=51.9
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-CCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
........++ +++.||++||++|+.+.|.+.++.+++.. .+.++.++.. ...
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~------------------------ 77 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENP------------------------ 77 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCCh------------------------
Confidence 3344444578 99999999999999999999999999975 3778888875 222
Q ss_pred HHHhhcC--CCCcceEEEE
Q 018808 108 KLDELFK--VMGIPHLVIL 124 (350)
Q Consensus 108 ~l~~~~~--v~~~P~~~li 124 (350)
.+...|+ +..+|++++.
T Consensus 78 ~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHHHhhhhccCCeEEEE
Confidence 4555566 6777887755
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-06 Score=77.94 Aligned_cols=69 Identities=28% Similarity=0.325 Sum_probs=59.7
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
+..+|.|+++||+.|+.+.|.++++++.+.....-+.|.+|++-+.. +..+++.|+|..
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 47899999999999999999999999999887666788888875432 267999999999
Q ss_pred ccEEEEECCC
Q 018808 278 LPTLVIIGPD 287 (350)
Q Consensus 278 ~P~~~lid~~ 287 (350)
+|++..+-++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999777
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=75.13 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHH-HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLV-EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~-~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
++|+|+++|+|.||-.|+.+.+..- +.....+-.+ +..+-++... ..+.+.++.++|+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~-------------------~~p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTA-------------------NDPAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecC-------------------CCHHHHHHHHHcC
Confidence 3469999999999999999887544 3444444444 5555554432 2234578899999
Q ss_pred CCCccEEEEECCCCCEEec
Q 018808 275 LSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~ 293 (350)
+.+.|++++++++|+-...
T Consensus 532 ~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred CCCCCEEEEECCCCCcCcC
Confidence 9999999999999975544
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.1e-05 Score=58.23 Aligned_cols=86 Identities=23% Similarity=0.433 Sum_probs=61.7
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC---hhhHH
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD---SETRD 107 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 107 (350)
...+| .++.|-+..|++|.++-..+ .++++-+.. .+.++.++...... ..+...+ ..+.+
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skp-----------v~f~~g~kee~~s~~ 105 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKP-----------VLFKVGDKEEKMSTE 105 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcc-----------eEeecCceeeeecHH
Confidence 34678 99999999999998876665 466666655 37777777644321 1111111 22356
Q ss_pred HHHhhcCCCCcceEEEECCCCeEEec
Q 018808 108 KLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+|++.|+++++|+++++|.+|+.+..
T Consensus 106 ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 106 ELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHHhccccCceEEEEcCCCCEEEe
Confidence 89999999999999999999987763
|
|
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=65.97 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=54.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ +++.||+.||..|.++...+..+.+.++ ++.++.+..+... .++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~------------------------eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFP------------------------EISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhh------------------------HHHHHHHH
Confidence 667 9999999999999999999988888772 4777777655443 78899999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
...|++..+ ..|..+.
T Consensus 69 ~~vp~~~~~-~~~~~v~ 84 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVD 84 (227)
T ss_pred hcCceeeee-ecchhhh
Confidence 999999887 4555443
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=61.82 Aligned_cols=76 Identities=32% Similarity=0.591 Sum_probs=44.7
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+.+.++ .++.|..+|||.|++..|.|.++.+..+ ++.+-.+..|.+.+...++ +.
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~-------------------lt-- 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQY-------------------LT-- 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTT-------------------TT--
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHH-------------------Hh--
Confidence 345566 8999999999999999999999988753 3666666555444311111 11
Q ss_pred cCCCCcceEEEECCCCeEEec
Q 018808 113 FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~ 133 (350)
.|..++|+++++|.+|+.+.+
T Consensus 93 ~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 93 NGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp -SS--SSEEEEE-TT--EEEE
T ss_pred CCCeecCEEEEEcCCCCEeEE
Confidence 577899999999999988765
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00059 Score=60.06 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=55.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC---C-CC------------H-HHHHHhhcCCCC-
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---D-DE------------E-ESFKRDLGSMPW- 256 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~---d-~~------------~-~~~~~~~~~~~~- 256 (350)
-.+|.+++.|.-+.||+|+++...+.++.+. | .+++..+.+ . ++ + ..+..+...+..
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 3568899999999999999999888776543 1 144443332 1 11 1 112222111110
Q ss_pred -cccc--------CCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 257 -LALP--------FKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 257 -~~~~--------~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
+.-+ ...+...++.+.+|++++|++++.|.+|++.
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~ 233 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ 233 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 0000 0112345788999999999999999999753
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.4e-05 Score=65.72 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=85.8
Q ss_pred hhhcccccCCc-eecCCCce-eeccccC--CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC----
Q 018808 171 RSVLTSHSRDF-VISSDGRK-ISVSDLE--GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---- 242 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~-v~l~~~~--gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---- 242 (350)
....|..||+. +.+.+|+. .++-|+. ++++||+|.+-.||+=..-+..++++.++|.+. ++++.|.+..
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~EAHps 148 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEEAHPS 148 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhhhCcC
Confidence 34668899999 78999988 8998884 589999999999999999999999999999976 5666666531
Q ss_pred ----------------CHHH---HHHhhcCCCCccccCCchh-HHHHHHHcCCCCcc-EEEEECCCCCEEeccch
Q 018808 243 ----------------EEES---FKRDLGSMPWLALPFKDKS-REKLARYFELSTLP-TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 243 ----------------~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~P-~~~lid~~G~i~~~~~~ 296 (350)
+.++ ..+.+.+.. ..+|+..|. +....+.||.. | .++|| .+|+|+++...
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~--PeRlyIi-~~gkv~Y~Gg~ 219 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGAL--PERLYII-QDGKVVYKGGP 219 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCC--cceEEEE-ECCEEEEeCCC
Confidence 1111 111122222 456665554 56677788764 5 45666 79999998753
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.6e-05 Score=51.98 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=42.2
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|+++|||+|+...+.|.+ .+ +.+..++++++.+. ..++.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999998777654 23 67777777654332 134677889999999
Q ss_pred EEEECCCCCE
Q 018808 281 LVIIGPDGKT 290 (350)
Q Consensus 281 ~~lid~~G~i 290 (350)
+++- |++
T Consensus 54 ~~~~---~~~ 60 (74)
T TIGR02196 54 IVIG---HKI 60 (74)
T ss_pred EEEC---CEE
Confidence 8763 554
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.4e-05 Score=53.05 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=40.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcCCCCcc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFELSTLP 279 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~P 279 (350)
+..||++|||+|++..+.|.++ + +.+-.++++.+... ...+.+ .+++..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 5679999999999988877544 2 33444556543221 012222 25888999
Q ss_pred EEEEECCCCCEEeccc
Q 018808 280 TLVIIGPDGKTLHSNV 295 (350)
Q Consensus 280 ~~~lid~~G~i~~~~~ 295 (350)
++ ++ .+|+++....
T Consensus 54 ~i-~~-~~g~~l~~~~ 67 (77)
T TIGR02200 54 TV-KF-ADGSFLTNPS 67 (77)
T ss_pred EE-EE-CCCeEecCCC
Confidence 86 46 5677765443
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0012 Score=57.32 Aligned_cols=88 Identities=10% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC--C---------------HHHHHHhhcCCC-
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI--SLDD--E---------------EESFKRDLGSMP- 255 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v--~~d~--~---------------~~~~~~~~~~~~- 255 (350)
.||.+++.|..+.||+|+++.+.+.++. +.+ +.+..+ .... + ...+.+......
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN----ALG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh----cCC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 4688999999999999999998887663 334 555443 3311 1 111222222111
Q ss_pred -CccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 256 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 256 -~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
............++++++||.++|+++ + ++|+++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 011222334567899999999999988 4 578776
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.1e-05 Score=54.59 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.1
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+++|||+|....+.|.++. ... .+.++-|+.+.+..+.+ ..+.+.+|+..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999988875 222 26777776654333221 33566788999999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 854
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00039 Score=54.74 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=63.0
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
...+|++++.|....|++|-.+-..+ .++++-+... +.++.+....+.... -+.... ...-...+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv~-f~~g~k------ee~~s~~ELa 108 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPVL-FKVGDK------EEKMSTEELA 108 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcceE-eecCce------eeeecHHHHH
Confidence 34679999999999999998876544 3355555543 667766665332110 000000 0112246899
Q ss_pred HHcCCCCccEEEEECCCCCEEeccchh
Q 018808 271 RYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.|+|+++|+++++|.+|+-+...-|.
T Consensus 109 ~kf~vrstPtfvFfdk~Gk~Il~lPGY 135 (182)
T COG2143 109 QKFAVRSTPTFVFFDKTGKTILELPGY 135 (182)
T ss_pred HHhccccCceEEEEcCCCCEEEecCCC
Confidence 999999999999999999988776664
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00027 Score=54.32 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=56.1
Q ss_pred ccCCCEEEEEEecc----CCccChhhH--HHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 194 DLEGKTIGLYFSMS----SYKASAEFT--PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 194 ~~~gk~vlv~f~~~----~C~~C~~~~--~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
.-++|.++|+++++ ||.+|+..+ |.+.+.. .. . +-+.+.+++..+ ..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~-~--fv~w~~dv~~~e---------------------g~ 66 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NT-R--MLFWACSVAKPE---------------------GY 66 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---Hc-C--EEEEEEecCChH---------------------HH
Confidence 34679999999999 889998777 3444443 22 2 666666655332 26
Q ss_pred HHHHHcCCCCccEEEEE---CCCCCEEeccch
Q 018808 268 KLARYFELSTLPTLVII---GPDGKTLHSNVA 296 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~li---d~~G~i~~~~~~ 296 (350)
+++..+++.++|++.++ +.+.+++.+..|
T Consensus 67 ~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G 98 (116)
T cd02991 67 RVSQALRERTYPFLAMIMLKDNRMTIVGRLEG 98 (116)
T ss_pred HHHHHhCCCCCCEEEEEEecCCceEEEEEEeC
Confidence 79999999999999999 666677888777
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=55.17 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=48.6
Q ss_pred CCCEEEEEEec-------cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 196 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 196 ~gk~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
.++.++|.|.+ +|||.|....|.+++......+. ..+|.|.+. +...|+. ++..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG-~r~~Wkd---------------p~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVG-DRPEWKD---------------PNNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE----HHHHC----------------TTSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcC-CHHHhCC---------------CCCC
Confidence 35677777764 49999999999999988885543 778877775 3333321 1123
Q ss_pred HHH--HcCCCCccEEEEECCCCCEEe
Q 018808 269 LAR--YFELSTLPTLVIIGPDGKTLH 292 (350)
Q Consensus 269 ~~~--~~~v~~~P~~~lid~~G~i~~ 292 (350)
+.. .+++.++||++-.+..++++.
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEH
T ss_pred ceEcceeeeeecceEEEECCCCccch
Confidence 444 689999999999977666443
|
; PDB: 1V9W_A 1WOU_A. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=51.96 Aligned_cols=65 Identities=28% Similarity=0.525 Sum_probs=45.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++|||+|....+.|.++. .+. .+.++.|+.+.+.+.+ ...+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~-------------------~~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEI-------------------QDYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHH-------------------HHHHHHHhCCCCCCe
Confidence 46799999999999999888765 221 3677777766544322 224666788899999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
+++ +|+.+
T Consensus 58 v~i---~g~~i 65 (84)
T TIGR02180 58 IFI---NGKFI 65 (84)
T ss_pred EEE---CCEEE
Confidence 865 46554
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=49.29 Aligned_cols=55 Identities=20% Similarity=0.538 Sum_probs=40.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|+++||++|+...+.|.+ . .+.+..++++.+.+ ....+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~-~i~~~~vdi~~~~~--------------------~~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K-GIAFEEIDVEKDSA--------------------AREEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C-CCeEEEEeccCCHH--------------------HHHHHHHHhCCCcccE
Confidence 567999999999998877654 2 36777787776543 1235677789999999
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 887
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0057 Score=59.93 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=47.2
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
..+.++.-+..|..+.||+|+.....++++....+ .+..-.|.... ..+++.+
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~~~-----------------------~~~~~~~ 164 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDGAL-----------------------FQDEVEA 164 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEchh-----------------------CHhHHHh
Confidence 34456677889999999999988888888876543 25555553221 1568899
Q ss_pred cCCCCccEEEE
Q 018808 273 FELSTLPTLVI 283 (350)
Q Consensus 273 ~~v~~~P~~~l 283 (350)
|++.++|++++
T Consensus 165 ~~v~~VP~~~i 175 (517)
T PRK15317 165 RNIMAVPTVFL 175 (517)
T ss_pred cCCcccCEEEE
Confidence 99999999976
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=59.84 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCceeecCCCCCc---EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 27 NGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 27 ~g~~~~l~~~~gk---~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
+++.....--+.| ++|.|++.|.|.|+++.|.+.+|..+|...+ +++-.|.+..=.
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~-lkFGkvDiGrfp-------------------- 189 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL-LKFGKVDIGRFP-------------------- 189 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC-CcccceeeccCc--------------------
Confidence 5555555444444 9999999999999999999999999998774 777777654222
Q ss_pred hhHHHHHhhcCC------CCcceEEEECCCCeEEecCCccceecc-cCcCCCCChHHHHHHH
Q 018808 104 ETRDKLDELFKV------MGIPHLVILDENGKVLSDGGVEIIREY-GVEGYPFTVERIKEMK 158 (350)
Q Consensus 104 ~~~~~l~~~~~v------~~~P~~~lid~~G~v~~~~~~~~~~~~-~~~~~p~~~~~i~~l~ 158 (350)
..+.+|+| +..||++++ .+|+-+.+- ..+... ...+++.+.+.+-...
T Consensus 190 ----d~a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv~~~F 244 (265)
T KOG0914|consen 190 ----DVAAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENVCQHF 244 (265)
T ss_pred ----ChHHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHHHHHh
Confidence 23444554 467899999 788766552 222222 3445777777765444
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00044 Score=59.00 Aligned_cols=118 Identities=19% Similarity=0.373 Sum_probs=79.4
Q ss_pred hhcCccCCcee-ccCCce-eecCCC-CC-c-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC----C----
Q 018808 14 LLSSSARDFLI-RSNGDQ-VKLDSL-KG-K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG----D---- 80 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~-~~l~~~-~g-k-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~----d---- 80 (350)
.+|..|||..+ +.+|++ .++.|+ +| + +||+|-+--||+=+.-.+.++++.++|++.-++-+|.|.- |
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccC
Confidence 46999999955 888888 999998 55 4 9999999889999988999999999998743344444421 1
Q ss_pred ----------CCHH---H-HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCC
Q 018808 81 ----------EDDE---A-FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGG 135 (350)
Q Consensus 81 ----------~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~ 135 (350)
.+.+ . .+.+.... ...++.-....+...+.||+..- .++|+ .+|+++|.++
T Consensus 154 ~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg 218 (237)
T PF00837_consen 154 GNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG 218 (237)
T ss_pred CCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC
Confidence 0111 1 22222223 23443333344577788887543 45555 6999999865
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=69.20 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=52.0
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHH-HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPIL-AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l-~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
-++| ++|+||++||-.|+.+.+.. .+-....+-. ++..+-.+...+.. .+.++-+.|
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p--------------------~~~~lLk~~ 530 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDP--------------------AITALLKRL 530 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCH--------------------HHHHHHHHc
Confidence 3567 99999999999999887774 3333333333 35565555443322 234777889
Q ss_pred CCCCcceEEEECCCCe
Q 018808 114 KVMGIPHLVILDENGK 129 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~ 129 (350)
++-+.|++++++++|+
T Consensus 531 ~~~G~P~~~ff~~~g~ 546 (569)
T COG4232 531 GVFGVPTYLFFGPQGS 546 (569)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999998886
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=50.11 Aligned_cols=63 Identities=22% Similarity=0.469 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH-hhcCCCCcc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD-ELFKVMGIP 119 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~P 119 (350)
+..||++||++|+...+.|.++ .+.+-.++++.+.+. ...+. ..++..++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~--------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGA--------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhH--------------------HHHHHHHhCCCceeC
Confidence 6789999999999988877654 134445666655321 11222 235888999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++ + .+|+++..
T Consensus 54 ~i~-~-~~g~~l~~ 65 (77)
T TIGR02200 54 TVK-F-ADGSFLTN 65 (77)
T ss_pred EEE-E-CCCeEecC
Confidence 874 4 57776654
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0022 Score=54.40 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=55.6
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC---CH-------------HHHHHhhcCCCC--
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EE-------------ESFKRDLGSMPW-- 256 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---~~-------------~~~~~~~~~~~~-- 256 (350)
-.++..++.|..+.||+|+++.+.+.+ ...+-++.++.++... +. +.|.++......
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 347899999999999999999998876 1222225555555432 11 122222221110
Q ss_pred --ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 257 --LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 257 --~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
-......+...++++.+|+.++|+++ + .+|+++
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 01122344566899999999999997 5 557764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00064 Score=53.05 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=56.0
Q ss_pred EEEEEecC--CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC
Q 018808 40 IGLYFSAS--WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (350)
Q Consensus 40 ~~v~F~~~--~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (350)
.+|.|-.. .+|-+....-.|.++.++|... ++.++.|++|... .++..|||.+
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~------------------------~LA~~fgV~s 91 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSE------------------------AIGDRFGVFR 91 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCH------------------------HHHHHcCCcc
Confidence 55655543 4778888888899999999643 4899999988775 7999999999
Q ss_pred cceEEEECCCCeEEec
Q 018808 118 IPHLVILDENGKVLSD 133 (350)
Q Consensus 118 ~P~~~lid~~G~v~~~ 133 (350)
+|+++++ ++|+.+.+
T Consensus 92 iPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 92 FPATLVF-TGGNYRGV 106 (132)
T ss_pred CCEEEEE-ECCEEEEE
Confidence 9999999 89998874
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=50.99 Aligned_cols=77 Identities=21% Similarity=0.559 Sum_probs=48.1
Q ss_pred CCc-EEEEEecC-------CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHH
Q 018808 37 KGK-IGLYFSAS-------WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 37 ~gk-~~v~F~~~-------~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
.|+ ++|.|+++ |||.|+.-.|.+.+.....++ +..++.+.+.+. ..|+. .+..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r-~~Wkd----------------p~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDR-PEWKD----------------PNNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---H-HHHC-----------------TTSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCH-HHhCC----------------CCCC
Confidence 456 88888854 999999999999988888554 477887776533 33322 1124
Q ss_pred HHh--hcCCCCcceEEEECCCCeEEe
Q 018808 109 LDE--LFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 109 l~~--~~~v~~~P~~~lid~~G~v~~ 132 (350)
+.. .+++.++||++-++..++++.
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEH
T ss_pred ceEcceeeeeecceEEEECCCCccch
Confidence 444 699999999999976666543
|
; PDB: 1V9W_A 1WOU_A. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00085 Score=47.36 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=40.5
Q ss_pred eccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEE
Q 018808 205 SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 284 (350)
Q Consensus 205 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~li 284 (350)
++++|+.|......++++..+++-+ ++++-+ . + ..++ .+||+.++|++ +|
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~---~ei~~~--~-~----------------------~~~~-~~ygv~~vPal-vI 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIE---VEIIDI--E-D----------------------FEEI-EKYGVMSVPAL-VI 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEE---EEEEET--T-T----------------------HHHH-HHTT-SSSSEE-EE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCe---EEEEEc--c-C----------------------HHHH-HHcCCCCCCEE-EE
Confidence 5777999999999888888887422 544433 1 1 1345 89999999999 55
Q ss_pred CCCCCEEecc
Q 018808 285 GPDGKTLHSN 294 (350)
Q Consensus 285 d~~G~i~~~~ 294 (350)
||+++...
T Consensus 56 --ng~~~~~G 63 (76)
T PF13192_consen 56 --NGKVVFVG 63 (76)
T ss_dssp --TTEEEEES
T ss_pred --CCEEEEEe
Confidence 47877654
|
... |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.015 Score=56.98 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=46.2
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
..+.++.-+..|..+.||+|+.....++++....+. +..-.|... ...+++++
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~----i~~~~id~~-----------------------~~~~~~~~ 165 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN----ISHTMIDGA-----------------------LFQDEVEA 165 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC----ceEEEEEch-----------------------hCHHHHHh
Confidence 345566778889999999999888877777666442 444433222 11568899
Q ss_pred cCCCCccEEEE
Q 018808 273 FELSTLPTLVI 283 (350)
Q Consensus 273 ~~v~~~P~~~l 283 (350)
|++.++|++++
T Consensus 166 ~~v~~VP~~~i 176 (515)
T TIGR03140 166 LGIQGVPAVFL 176 (515)
T ss_pred cCCcccCEEEE
Confidence 99999999986
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00054 Score=55.40 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=44.1
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHH-H--HHHHHHhccCCCEEEEEEECCCCH-HHHHhHHhcCCCcccccCChhh
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDD-EAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~v~i~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
+..+.-++| ++|.+.++||..|..|... | .++.+.++++ ||.|.+|.++ .+++.....
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~----FI~VkvDree~Pdid~~y~~------------- 92 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN----FIPVKVDREERPDIDKIYMN------------- 92 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-----EEEEEETTT-HHHHHHHHH-------------
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC----EEEEEeccccCccHHHHHHH-------------
Confidence 344445678 9999999999999877642 2 2334444332 5565555432 222111110
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
-.....|..+.|+.++++++|+.++-+
T Consensus 93 --~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 --AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp --HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred --HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 111223778999999999999998853
|
; PDB: 3IRA_A. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=44.98 Aligned_cols=59 Identities=36% Similarity=0.530 Sum_probs=41.4
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEE
Q 018808 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122 (350)
Q Consensus 43 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 122 (350)
.+++++|++|......+.++...++ +.+=.+.. .+. +++ ..||+.++|+++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~-~~~-----------------------~~~-~~ygv~~vPalv 54 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDI-EDF-----------------------EEI-EKYGVMSVPALV 54 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEET-TTH-----------------------HHH-HHTT-SSSSEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEc-cCH-----------------------HHH-HHcCCCCCCEEE
Confidence 3468889999998888888888773 33433333 232 255 889999999996
Q ss_pred EECCCCeEEec
Q 018808 123 ILDENGKVLSD 133 (350)
Q Consensus 123 lid~~G~v~~~ 133 (350)
+ ||+++..
T Consensus 55 I---ng~~~~~ 62 (76)
T PF13192_consen 55 I---NGKVVFV 62 (76)
T ss_dssp E---TTEEEEE
T ss_pred E---CCEEEEE
Confidence 6 6888764
|
... |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=42.85 Aligned_cols=59 Identities=31% Similarity=0.511 Sum_probs=41.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..++||+|......|.+ . .+.+-.++++.+.+ ..+.+.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~-~i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K-GIPYEEVDVDEDEE--------------------AREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T-TBEEEEEEGGGSHH--------------------HHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c-CCeeeEcccccchh--------------------HHHHHHHHcCCCccCE
Confidence 467899999999997766632 2 37777777776642 2235666669999999
Q ss_pred EEEECCCCeE
Q 018808 121 LVILDENGKV 130 (350)
Q Consensus 121 ~~lid~~G~v 130 (350)
+++ +|++
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 987 5554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=43.74 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=37.7
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+.+|||+|......| .+.+ +.+-.++++.+++ ...++.+..|...+|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE-------------------AREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH-------------------HHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh-------------------HHHHHHHHcCCCccCE
Confidence 4678999999998877666 3333 5566666664432 1245556669999999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0037 Score=52.93 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC--CH--------------HHHHhHHhc
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--DD--------------EAFKGYFSK 92 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~--~~--------------~~~~~~~~~ 92 (350)
.+.+..-.++ +++.|..+.||+|+++.+.+.+ ...+.++.++.+.... .. +.+.++...
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 3444444567 9999999999999999988876 1222134444444432 11 112222221
Q ss_pred CCC---cccccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 93 MPW---LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 93 ~~~---~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
... ....-...+.+..+++.+|+.++|++++ .+|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 111 0111234556778999999999999984 567764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=49.78 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCEEEEEEec--------cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 197 GKTIGLYFSM--------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 197 gk~vlv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
|+.+++.|.+ +|||.|.+..|.+.+..+..... +.+|.|.+.+. +. =.+....
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~r-p~---------------Wk~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNR-PY---------------WKDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCC-Cc---------------ccCCCCc
Confidence 4456666664 59999999999998888755544 88888877631 11 1122244
Q ss_pred HHHHcCC-CCccEEEEECC
Q 018808 269 LARYFEL-STLPTLVIIGP 286 (350)
Q Consensus 269 ~~~~~~v-~~~P~~~lid~ 286 (350)
+.+..++ .++||++=.++
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 5666676 89999998874
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0049 Score=53.60 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=56.3
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCC-CH----------------HHHHhHHh
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDE-DD----------------EAFKGYFS 91 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~-~~----------------~~~~~~~~ 91 (350)
+....-.|+ +++.|.-+.||+|+++.+.+.++.+ .+ ++.++.+.... .+ ..+.++..
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~ 175 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK 175 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence 333334567 8999999999999999888876643 22 23333333311 11 11222222
Q ss_pred cCCCcc-cccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 92 KMPWLA-VPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
...... ..-...+.+..+++.+|++++|++++ ++|+++
T Consensus 176 ~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 176 GKDVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CCCCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 111110 11234566779999999999999996 578765
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0064 Score=53.52 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC---CCC-------------HH-HHHhHHhcCCCc-
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---DED-------------DE-AFKGYFSKMPWL- 96 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~---d~~-------------~~-~~~~~~~~~~~~- 96 (350)
-.++ +++.|.-+.||+|+++.+.+.++.+. +++++..+.. ..+ +. .+..+...+...
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 3566 88899999999999998888765542 2355444432 111 11 111111111100
Q ss_pred -cccc-------CChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 97 -AVPF-------SDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 97 -~~~~-------~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.... ...+.+..+.+.+|++++|++++.|.+|.+.
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~ 233 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ 233 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 0000 1122355788899999999999999889754
|
|
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0037 Score=45.08 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=45.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc--CCCCc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF--KVMGI 118 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~v~~~ 118 (350)
+..|..+|||+|.+....|.++..++. .+.+..++++.+... ..++.+.+ ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~--------------------~~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGIS--------------------KADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHH--------------------HHHHHHHHCCCCCcC
Confidence 567899999999999999998887652 366777777655321 11333333 35789
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
|++++ +|+.+.
T Consensus 60 P~ifi---~g~~ig 70 (85)
T PRK11200 60 PQIFV---DQKHIG 70 (85)
T ss_pred CEEEE---CCEEEc
Confidence 99875 576653
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00076 Score=56.14 Aligned_cols=91 Identities=19% Similarity=0.319 Sum_probs=65.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC-
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL- 275 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 275 (350)
.+.++|.|++.|.|.|....|.+.++..+|...+ +.+=.|.+..= ...+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf-----------------------pd~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF-----------------------PDVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC-----------------------cChHHheeec
Confidence 3589999999999999999999999999999877 66666655421 125667776
Q ss_pred -----CCccEEEEECCCCCEEeccchhhhhhcC-CccCCCCccchH
Q 018808 276 -----STLPTLVIIGPDGKTLHSNVAEAIEEHG-VGAFPFTPEKFA 315 (350)
Q Consensus 276 -----~~~P~~~lid~~G~i~~~~~~~~~~~~~-~~~~p~~~~~~~ 315 (350)
+.+||.+++ ++|+-+.+.-. .+..| ...||++.+-.-
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~RrP~--vd~~gra~s~~fSeenv~ 241 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSRRPD--VDVKGRAVSFPFSEENVC 241 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhcCcc--ccccCCcccccccHHHHH
Confidence 459999999 88887766422 22222 246788877543
|
|
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0081 Score=50.37 Aligned_cols=109 Identities=17% Similarity=0.313 Sum_probs=80.5
Q ss_pred eecCCCceeeccc-cCCCEEEE--EEe-----ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 182 VISSDGRKISVSD-LEGKTIGL--YFS-----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 182 ~~~~~g~~v~l~~-~~gk~vlv--~f~-----~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
+.+.+|+ ++|.+ |.|+-.|| .|. ..-|+-|...+..++.....+..++ +.++.|+-. ..+++..|.+.
T Consensus 51 F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~r 126 (211)
T PF05988_consen 51 FDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKRR 126 (211)
T ss_pred EeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHHh
Confidence 4566776 88877 57763333 332 4579999999999988888888887 888888866 78889999999
Q ss_pred CCCccccCCchhHHHHHHHcCC-----CCccEEEEECCC-CCEEeccc
Q 018808 254 MPWLALPFKDKSREKLARYFEL-----STLPTLVIIGPD-GKTLHSNV 295 (350)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~v-----~~~P~~~lid~~-G~i~~~~~ 295 (350)
++|- +|..+.....+...|++ ...|.+-++=++ |+|.+.+.
T Consensus 127 mGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTys 173 (211)
T PF05988_consen 127 MGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYS 173 (211)
T ss_pred cCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEEee
Confidence 9987 88888777778888887 456765444455 45554443
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0066 Score=46.60 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=48.1
Q ss_pred CCCCc-EEEEEecC----CChhhhhh--hHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 35 SLKGK-IGLYFSAS----WCGPCQRF--TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 35 ~~~gk-~~v~F~~~----~C~~C~~~--~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.-++| ++|+++++ ||..|+.. .|.+.+..+ + ++.+.+.+++..+. .
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~--~fv~w~~dv~~~eg----------------------~ 66 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T--RMLFWACSVAKPEG----------------------Y 66 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c--CEEEEEEecCChHH----------------------H
Confidence 44678 99999999 88888754 344444433 2 35555555554321 3
Q ss_pred HHHhhcCCCCcceEEEE---CCCCeEEe
Q 018808 108 KLDELFKVMGIPHLVIL---DENGKVLS 132 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~li---d~~G~v~~ 132 (350)
.++..++++++|++.++ +.+.+++.
T Consensus 67 ~la~~l~~~~~P~~~~l~~~~~~~~vv~ 94 (116)
T cd02991 67 RVSQALRERTYPFLAMIMLKDNRMTIVG 94 (116)
T ss_pred HHHHHhCCCCCCEEEEEEecCCceEEEE
Confidence 79999999999999999 44445554
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0066 Score=51.55 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=74.5
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCCCHHHHH-HhhcCCCCccccCCc--hh
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFK-RDLGSMPWLALPFKD--KS 265 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~~~~~~~-~~~~~~~~~~~~~~~--~~ 265 (350)
....+..|+++||.+-..+|..|...+..|..+..++..+| .++.++.|+--.....+. ..++..--..||+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 34567789999999999999999999999999999999887 578888888754333332 223322223466543 23
Q ss_pred HHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 266 REKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 266 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
...+...++-. -=.++|+|+=|++.+...
T Consensus 99 q~dvW~~L~G~-kdD~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 99 QPDVWELLNGS-KDDFLIYDRCGRLTYHIP 127 (238)
T ss_pred ccCHHHHhCCC-cCcEEEEeccCcEEEEec
Confidence 34566666543 236789999999998754
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=45.36 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=43.5
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--CCCc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE--LSTL 278 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~ 278 (350)
+..|+.+|||+|.+....|+++..++. + +.+..++++.+..+ ..++.+.++ +..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAEGIS-------------------KADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCChHH-------------------HHHHHHHHCCCCCcC
Confidence 567999999999999999999887653 3 66666666643211 123444444 5789
Q ss_pred cEEEEECCCCCEE
Q 018808 279 PTLVIIGPDGKTL 291 (350)
Q Consensus 279 P~~~lid~~G~i~ 291 (350)
|+++ + +|+.+
T Consensus 60 P~if-i--~g~~i 69 (85)
T PRK11200 60 PQIF-V--DQKHI 69 (85)
T ss_pred CEEE-E--CCEEE
Confidence 9976 4 46554
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.006 Score=44.54 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC--CCC----HHH-HHhHHhcC-CCcccccCChhhHHHHHhh
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG--DED----DEA-FKGYFSKM-PWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~--d~~----~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 112 (350)
+..|+...||+|....+.+.++....+. ++.+....+ ... ... .+...... ......+.+.-....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988754443 356665543 322 111 11111110 0000111111144578889
Q ss_pred cCCCCcceEEEEC
Q 018808 113 FKVMGIPHLVILD 125 (350)
Q Consensus 113 ~~v~~~P~~~lid 125 (350)
+|+.++|++++-|
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 9999999999965
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0094 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=29.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ 69 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~ 69 (350)
.++ +++.|+...||+|..+.+.+.++.++++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~ 47 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD 47 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC
Confidence 677 999999999999999999999999988553
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.008 Score=42.75 Aligned_cols=64 Identities=30% Similarity=0.470 Sum_probs=43.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..+|||+|....+.|.++.. .+.++.+..+.+..+ ....+.+.++..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~-------------------~~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSE-------------------IQDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHH-------------------HHHHHHHHhCCCCCCe
Confidence 567889999999998888776533 356677766554321 1225666678899999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 57 v~~---~g~~ig 65 (82)
T cd03419 57 VFI---GGKFIG 65 (82)
T ss_pred EEE---CCEEEc
Confidence 754 465543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.065 Score=42.83 Aligned_cols=131 Identities=11% Similarity=0.228 Sum_probs=78.8
Q ss_pred hcCccCCceecc-----------CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHH-hccCCCEEEEEE-ECC
Q 018808 15 LSSSARDFLIRS-----------NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNE-LSRQGDFEVIFV-SGD 80 (350)
Q Consensus 15 ~g~~~p~f~~~~-----------~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~-~~~~~~~~~v~i-~~d 80 (350)
+|++.|...+.. ...+++.+.+.|| .+|...|-.-..-....|.+..+.+. |+.+ +++...| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d-~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD-KYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc-ceeEEEEEecc
Confidence 578888776643 2336777789999 66666655444444445555555444 5444 4666665 555
Q ss_pred CC--------HHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC-cceEEEECCCCeEEecCCccceecccCcCCCCCh
Q 018808 81 ED--------DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTV 151 (350)
Q Consensus 81 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~ 151 (350)
+. ...+++-.+.+||-.+-.. .+..+.+.|+... .-.++++|++|+|.+.. .| ..+.
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~vlD---~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~ 147 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFVLD---SNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSP 147 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEEEc---CCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCH
Confidence 43 3334445556787665443 3335677777653 34688999999998741 22 3566
Q ss_pred HHHHHHHHH
Q 018808 152 ERIKEMKEQ 160 (350)
Q Consensus 152 ~~i~~l~~~ 160 (350)
+.+...+..
T Consensus 148 ~Ev~qVi~L 156 (160)
T PF09695_consen 148 AEVQQVIAL 156 (160)
T ss_pred HHHHHHHHH
Confidence 666666543
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0053 Score=43.70 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=39.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|......|.++.. . +.++-|+.+.+..+. ...+.+.+|...+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~---~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----K---PAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----C---cEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 467889999999988887766532 2 667777666432221 134566778899999
Q ss_pred EE
Q 018808 281 LV 282 (350)
Q Consensus 281 ~~ 282 (350)
++
T Consensus 57 v~ 58 (82)
T cd03419 57 VF 58 (82)
T ss_pred EE
Confidence 74
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.01 Score=50.40 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=76.3
Q ss_pred ccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC--CEEEEEEECCCCHHHHH-hHHhcC
Q 018808 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDEAFK-GYFSKM 93 (350)
Q Consensus 18 ~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~~~~~~~-~~~~~~ 93 (350)
++|.+.+. ..-.+.+..|+ +||.+.-.+|..|......|..|..+|...+ ++.++.|+--+....++ ..++..
T Consensus 9 ~~p~W~i~---~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 9 PPPPWKIG---GQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred CCCCceEC---CchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence 44555442 24456788999 9999999999999999999999999998877 78888888543322222 222222
Q ss_pred CCcccccCCh-hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDS-ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
--..++++.. .....+...++-. ---++|+|+=|++.+.
T Consensus 86 ~~~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 86 VSEHIPVYQQDENQPDVWELLNGS-KDDFLIYDRCGRLTYH 125 (238)
T ss_pred CCCCCceecCCccccCHHHHhCCC-cCcEEEEeccCcEEEE
Confidence 2233555432 2334666666643 3468999999999884
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.006 Score=44.55 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=49.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC--CC-----HHHHHHhhc--CCC-CccccCCchhHHHHH
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD--DE-----EESFKRDLG--SMP-WLALPFKDKSREKLA 270 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 270 (350)
+..|+...||+|....+.+.++......+ +.+..+.+. .. ....+.... ... -..+.... ......
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL-ADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH-HHHHHH
Confidence 35789999999999999999987444333 666666553 21 111111111 000 00000000 456788
Q ss_pred HHcCCCCccEEEEEC
Q 018808 271 RYFELSTLPTLVIIG 285 (350)
Q Consensus 271 ~~~~v~~~P~~~lid 285 (350)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 899999999999886
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0053 Score=54.27 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+..|||.||-+.++.|..+-..|..++.+|.. ++|+.|..... . +...|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~-----------------------~-~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC-----------------------P-ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC-----------------------C-TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc-----------------------C-cccCCccc
Confidence 45899999999999999999999999999986 88998876521 0 35678899
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.+|++++. ++|.++...++
T Consensus 198 ~LPtllvY-k~G~l~~~~V~ 216 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFVG 216 (265)
T ss_dssp C-SEEEEE-ETTEEEEEECT
T ss_pred CCCEEEEE-ECCEEEEeEEe
Confidence 99999999 89999988876
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.014 Score=40.11 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=34.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+.+||++|......|.+ .+ +.+..++++.+.+. ..++.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 467899999999987666644 23 55555666643221 123344447889998
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.029 Score=38.26 Aligned_cols=61 Identities=31% Similarity=0.457 Sum_probs=40.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..+|||+|+.....|.+. .+.+..++++.+.+ ....+.+..+...+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDGE--------------------LREELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 5678899999999988877654 24556666665543 1225555667788887
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 755 566554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=47.87 Aligned_cols=108 Identities=22% Similarity=0.391 Sum_probs=72.3
Q ss_pred CceeccCCceeecCCC-CCc--EEEEEec------CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 21 DFLIRSNGDQVKLDSL-KGK--IGLYFSA------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 21 ~f~~~~~g~~~~l~~~-~gk--~~v~F~~------~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
++.++....+++|.++ .|+ ++|+.+. ..|+-|..+...+......+..+ ++.++.|+- ...+.+..|.+
T Consensus 48 ~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r-d~tfa~vSr-aP~~~i~afk~ 125 (211)
T PF05988_consen 48 DYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR-DTTFAVVSR-APLEKIEAFKR 125 (211)
T ss_pred CeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC-CceEEEEeC-CCHHHHHHHHH
Confidence 4666544445999985 667 6666433 45999999999997777788777 488888874 47788999999
Q ss_pred cCCCcccccCChhhHHHHHhhcCC-----CCcceE-EEECCCCeEEe
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKV-----MGIPHL-VILDENGKVLS 132 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~-~lid~~G~v~~ 132 (350)
.++|...-++..+. .+...|++ ...|.+ +++-..|+|..
T Consensus 126 rmGW~~pw~Ss~gs--~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 126 RMGWTFPWYSSYGS--DFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred hcCCCceEEEcCCC--cccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 99998433443332 55666776 344533 33323355554
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.02 Score=39.36 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=36.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++||++|.+....|.+ . .+.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~-~i~~~~~~i~~~~~~--------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R-GIPFEEVDVDEDPEA--------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C-CCCeEEEeCCCCHHH--------------------HHHHHHHcCCcccCE
Confidence 567899999999997766654 1 255666666654321 123444457788998
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 876
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.025 Score=42.18 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=53.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..++++|+=..+.||........+++.++...++ +.+..+.+-... +...++++.|||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 3578888888999999999999999988887654 666666553221 234789999999
Q ss_pred CC-ccEEEEECCCCCEEeccch
Q 018808 276 ST-LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~-~P~~~lid~~G~i~~~~~~ 296 (350)
.. -|..+|| ++|++++...-
T Consensus 76 ~HeSPQ~ili-~~g~~v~~aSH 96 (105)
T PF11009_consen 76 KHESPQVILI-KNGKVVWHASH 96 (105)
T ss_dssp ---SSEEEEE-ETTEEEEEEEG
T ss_pred CcCCCcEEEE-ECCEEEEECcc
Confidence 76 9999999 99999976543
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.025 Score=38.60 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=38.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|+.....|.+.. +.+..++++.+.+. ..++.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 45688999999998888776542 34445555543321 144566677788998
Q ss_pred EEEECCCCCEEe
Q 018808 281 LVIIGPDGKTLH 292 (350)
Q Consensus 281 ~~lid~~G~i~~ 292 (350)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 754 455543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=43.09 Aligned_cols=71 Identities=21% Similarity=0.447 Sum_probs=50.2
Q ss_pred CCc-EEEEEec--------CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 37 KGK-IGLYFSA--------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 37 ~gk-~~v~F~~--------~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
+|+ +++.|.+ +|||.|..-.|.+.+..+..++ ++.+|-+.+...+ . |.. .+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp-~---------Wk~-------p~n 84 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRP-Y---------WKD-------PAN 84 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCC-c---------ccC-------CCC
Confidence 667 8888886 5899999999999988886665 4788888765332 1 111 112
Q ss_pred HHHhhcCC-CCcceEEEECC
Q 018808 108 KLDELFKV-MGIPHLVILDE 126 (350)
Q Consensus 108 ~l~~~~~v-~~~P~~~lid~ 126 (350)
.+.+..++ +.+||++=.+.
T Consensus 85 ~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 85 PFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccccCCCceeecceeeEEcC
Confidence 45555666 88999998864
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=41.06 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=39.2
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.-++.|..+|||+|.+....|.+ .| +.+..++++.+.+. .++.+..|...+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~--------------------~~~~~~~g~~~v 58 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARG--------------------RSLRAVTGATTV 58 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHH--------------------HHHHHHHCCCCc
Confidence 34567999999999988777643 23 44445555543221 235556788999
Q ss_pred cEEEEECCCCCEE
Q 018808 279 PTLVIIGPDGKTL 291 (350)
Q Consensus 279 P~~~lid~~G~i~ 291 (350)
|.+++ +|+.+
T Consensus 59 P~i~i---~g~~i 68 (79)
T TIGR02190 59 PQVFI---GGKLI 68 (79)
T ss_pred CeEEE---CCEEE
Confidence 99964 45543
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=43.39 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=40.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-++.|..+|||+|.+....|.++.-..+ .++++.|.-..+.. +....+.+..|.+.+|
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~-------------------~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPEN-------------------ELRDYFEQITGGRTVP 71 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCH-------------------HHHHHHHHHcCCCCcC
Confidence 5778899999999987776654421110 23444443211211 2234667777888999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 72 ~IfI---~g~~iG 81 (108)
T PHA03050 72 RIFF---GKTSIG 81 (108)
T ss_pred EEEE---CCEEEe
Confidence 9966 466553
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.012 Score=52.02 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=51.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
|||.||-+.++.|..+...|..|+.+|+. ++|+.|...... +...|.....|
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-------------------------~~~~f~~~~LP 200 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-------------------------ASENFPDKNLP 200 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-------------------------TTTTS-TTC-S
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-------------------------cccCCcccCCC
Confidence 99999999999999999999999999984 889999764321 34458889999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|.++..
T Consensus 201 tllvY-k~G~l~~~ 213 (265)
T PF02114_consen 201 TLLVY-KNGDLIGN 213 (265)
T ss_dssp EEEEE-ETTEEEEE
T ss_pred EEEEE-ECCEEEEe
Confidence 99999 79988774
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.026 Score=45.86 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=42.6
Q ss_pred ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC
Q 018808 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 29 ~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
..+.+..-.++ +|+.|+...||+|..+.+.+.++.+++-+.+++.++...+-..
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 34556667778 9999999999999999999999999996556788888877444
|
... |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=44.60 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=38.8
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|......|.+. +-....++++-|.-..+..+ ...++.+..|...+|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~----~i~~~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF----SFKRGAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc----CCCcCCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcCE
Confidence 5569999999998877766554 22111255554432111111 1245666778889999
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+| || |+.+
T Consensus 73 If-I~--g~~i 80 (108)
T PHA03050 73 IF-FG--KTSI 80 (108)
T ss_pred EE-EC--CEEE
Confidence 84 43 4544
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.046 Score=40.80 Aligned_cols=72 Identities=17% Similarity=0.292 Sum_probs=50.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC-c
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-I 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~ 118 (350)
++|+=.++.||....-..+|.+.+....++ +.+..|.+=..++ ..+.++..|||.. .
T Consensus 22 ~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~--~~~y~l~v~~~R~--------------------vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 22 VLIFKHSTRCPISAMALREFEKFWEESPDE--IPVYYLDVIEYRP--------------------VSNAIAEDFGVKHES 79 (105)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHH--------------------HHHHHHHHHT----S
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhhcCCcc--ceEEEEEEEeCch--------------------hHHHHHHHhCCCcCC
Confidence 666669999999999998998888887653 7777777654443 3458999999975 8
Q ss_pred ceEEEECCCCeEEecC
Q 018808 119 PHLVILDENGKVLSDG 134 (350)
Q Consensus 119 P~~~lid~~G~v~~~~ 134 (350)
|.++++ ++|++++..
T Consensus 80 PQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 80 PQVILI-KNGKVVWHA 94 (105)
T ss_dssp SEEEEE-ETTEEEEEE
T ss_pred CcEEEE-ECCEEEEEC
Confidence 999999 899999864
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.052 Score=37.75 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=38.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC-Ccc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-GIP 119 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 119 (350)
+..|..++||+|......|++ . ++.+-.++++.+.+. ...+.+.++.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~-~i~~~~i~i~~~~~~--------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K-GVDYEEIDVDGDPAL--------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C-CCcEEEEECCCCHHH--------------------HHHHHHHhCCCCccC
Confidence 466888999999997776654 2 255666666655332 12444555665 789
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 54 ~v~i---~g~~ig 63 (75)
T cd03418 54 QIFI---GDVHIG 63 (75)
T ss_pred EEEE---CCEEEe
Confidence 7764 455543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.017 Score=41.80 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--CCCc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE--LSTL 278 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~ 278 (350)
++.|..+|||+|.+....|.++..++. + +.+..++.+.+..+ ..++.+.+| ...+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999998888877644332 2 44555555432211 123455555 3789
Q ss_pred cEEEE
Q 018808 279 PTLVI 283 (350)
Q Consensus 279 P~~~l 283 (350)
|.+++
T Consensus 59 P~ifi 63 (86)
T TIGR02183 59 PQIFV 63 (86)
T ss_pred CeEEE
Confidence 99854
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.037 Score=38.54 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=34.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC-Ccc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLP 279 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~P 279 (350)
+..|..+|||+|......|++ .+ +.+-.++++.+.+. ..++.+.+|.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL-------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCccC
Confidence 456889999999987776654 23 44445555544322 13455566766 899
Q ss_pred EEEEEC
Q 018808 280 TLVIIG 285 (350)
Q Consensus 280 ~~~lid 285 (350)
.++ +|
T Consensus 54 ~v~-i~ 58 (75)
T cd03418 54 QIF-IG 58 (75)
T ss_pred EEE-EC
Confidence 764 43
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.029 Score=41.73 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=39.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-++.|..+|||+|.+....|.++ + +.+-.+++|.+++. .+....+.+..|..++|
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~----~----i~~~~vdid~~~~~-----------------~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL----G----VNPAVHEIDKEPAG-----------------KDIENALSRLGCSPAVP 63 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----C----CCCEEEEcCCCccH-----------------HHHHHHHHHhcCCCCcC
Confidence 56778889999999877655533 1 33444555543221 11223455556788999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 64 ~Vfi---~g~~iG 73 (99)
T TIGR02189 64 AVFV---GGKLVG 73 (99)
T ss_pred eEEE---CCEEEc
Confidence 9865 465553
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.05 Score=38.51 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=40.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++-|..+|||+|.+....|.+ . .+.+..++++.+.+. ..+.+..|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~-gi~y~~idi~~~~~~---------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------K-GYDFEEIPLGNDARG---------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------c-CCCcEEEECCCChHH---------------------HHHHHHHCCCCcC
Confidence 6778899999999998777753 2 255556666654321 1344557888999
Q ss_pred eEEEECCCCeEE
Q 018808 120 HLVILDENGKVL 131 (350)
Q Consensus 120 ~~~lid~~G~v~ 131 (350)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9975 56554
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.028 Score=39.68 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=33.8
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEE
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 281 (350)
..|+.+|||+|......|++. + +.+-.++++.+.+. ..++.+..|...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-------~--i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-------G--VTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-------C--CCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCEE
Confidence 568899999999887777542 3 33333444433321 1345556678889997
Q ss_pred EE
Q 018808 282 VI 283 (350)
Q Consensus 282 ~l 283 (350)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 44
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.071 Score=36.98 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=40.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++-|..++||.|+.....|.+ . .+.+..++++.+.+ ...++.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~-gi~~~~~di~~~~~--------------------~~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K-GLPYVEINIDIFPE--------------------RKAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C-CCceEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 456778999999997776664 2 36666677765543 2235666667677888
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 55 v~i---~~~~iG 63 (73)
T cd03027 55 IFF---NEKLVG 63 (73)
T ss_pred EEE---CCEEEe
Confidence 865 455554
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.14 Score=39.01 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..|.|+|-|.-.|=|.|..+-..|.++.+.+.+- ..|..|..|+. ..+.+.|++
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-----------------------~~~~~~~~l 75 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-----------------------PDFVKMYEL 75 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-----------------------hhhhhhhcc
Confidence 3579999999999999999999999999998764 44555555422 457788999
Q ss_pred CCccEEEEE-CCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCe
Q 018808 276 STLPTLVII-GPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (350)
Q Consensus 276 ~~~P~~~li-d~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 341 (350)
...|++.++ +...--+.-..|.. ..+.|.-+..+++.++.+..-.+..-...++....+|
T Consensus 76 ~~p~tvmfFfn~kHmkiD~gtgdn------~Kin~~~~~kq~~Idiie~iyRga~KGKgiV~sP~dy 136 (142)
T KOG3414|consen 76 YDPPTVMFFFNNKHMKIDLGTGDN------NKINFAFEDKQEFIDIIETIYRGARKGKGIVQSPKDY 136 (142)
T ss_pred cCCceEEEEEcCceEEEeeCCCCC------ceEEEEeccHHHHHHHHHHHHHhhhcCCeEEECCcch
Confidence 998887666 32222222222211 2345556677777766666555555555666665555
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.038 Score=39.87 Aligned_cols=65 Identities=18% Similarity=0.371 Sum_probs=39.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC--CCCc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK--VMGI 118 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 118 (350)
++.|..+|||+|.+....|.++..++. .+.+..++++.+... ...+...++ ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~--------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGIS--------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHH--------------------HHHHHHHhCCCCCCc
Confidence 567888999999998888776644322 245555665543211 113444455 3789
Q ss_pred ceEEEECCCCeEE
Q 018808 119 PHLVILDENGKVL 131 (350)
Q Consensus 119 P~~~lid~~G~v~ 131 (350)
|.+++ +|+.+
T Consensus 59 P~ifi---~g~~i 68 (86)
T TIGR02183 59 PQIFV---DEKHV 68 (86)
T ss_pred CeEEE---CCEEe
Confidence 99865 45554
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.087 Score=46.23 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=75.4
Q ss_pred cCccCCcee-ccCCceeecCC-CCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCC--CEEEEEEECCCCHH--HHH
Q 018808 16 SSSARDFLI-RSNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDE--AFK 87 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~~~~--~~~ 87 (350)
.-..|+|.. +++|+.+++.+ ++|| +|..|+..|-..|..-- .....+.|.... +++++-|++-+..- -+.
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw--~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSW--TSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHH--hhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 345788877 68888888865 7999 44445556655443211 113334444333 69999999865432 111
Q ss_pred hHHh--------cCCCcccccCChh-hHHHHHhhcCCC--CcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHH
Q 018808 88 GYFS--------KMPWLAVPFSDSE-TRDKLDELFKVM--GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKE 156 (350)
Q Consensus 88 ~~~~--------~~~~~~~~~~~~~-~~~~l~~~~~v~--~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~ 156 (350)
+++. ...|..+-+...+ ....+.+.+++. .+..++|+|.+|+|...+ +.+.+.+.+..
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag-----------sG~At~~E~~~ 244 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG-----------SGPATPEELES 244 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc-----------cCCCCHHHHHH
Confidence 2221 1123333222211 234677788875 467999999999999853 22356666665
Q ss_pred HHH
Q 018808 157 MKE 159 (350)
Q Consensus 157 l~~ 159 (350)
|..
T Consensus 245 L~k 247 (252)
T PF05176_consen 245 LWK 247 (252)
T ss_pred HHH
Confidence 554
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=39.23 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=37.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
..|+.+|||+|......|.+. .+.+-.++++.+.+. ..++.+..+..++|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~--------------------~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPAL--------------------RDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHH--------------------HHHHHHHhCCCCcCEE
Confidence 567889999999988777642 244555555555421 2245555677889997
Q ss_pred EEECCCCeEE
Q 018808 122 VILDENGKVL 131 (350)
Q Consensus 122 ~lid~~G~v~ 131 (350)
++ +|+.+
T Consensus 54 ~i---~g~~i 60 (79)
T TIGR02181 54 FI---GDVHV 60 (79)
T ss_pred EE---CCEEE
Confidence 55 45544
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.97 Score=37.26 Aligned_cols=128 Identities=23% Similarity=0.410 Sum_probs=78.3
Q ss_pred HHHhhcCCCCcceEEEECC-CCe-EEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecC
Q 018808 108 KLDELFKVMGIPHLVILDE-NGK-VLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISS 185 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~-~G~-v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~ 185 (350)
.+++.+++.. |+++++.+ +++ +.+.+ . .++.+.+...+... ..|-+ ...
T Consensus 32 ~~~~~~~~~~-p~i~~~k~~~~~~~~y~~----------~--~~~~~~l~~fI~~~---------------~~P~v-~~~ 82 (184)
T PF13848_consen 32 ELAKKYGIKE-PTIVVYKKFDEKPVVYDG----------D--KFTPEELKKFIKKN---------------SFPLV-PEL 82 (184)
T ss_dssp HHHHHCTCSS-SEEEEEECTTTSEEEESS----------S--TTSHHHHHHHHHHH---------------SSTSC-EEE
T ss_pred HHHHHhCCCC-CcEEEeccCCCCceeccc----------c--cCCHHHHHHHHHHh---------------ccccc-ccc
Confidence 6788899988 99999965 233 33321 1 13556665555431 12332 111
Q ss_pred CCceeeccccCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCch
Q 018808 186 DGRKISVSDLEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDK 264 (350)
Q Consensus 186 ~g~~v~l~~~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (350)
+...+..---.+++ +++.|..............+.+++.+++++ +.++.+..+..
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~--------------------- 138 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF--------------------- 138 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT---------------------
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh---------------------
Confidence 22211111112344 777776665666677778888888888765 77888776632
Q ss_pred hHHHHHHHcCCC--CccEEEEECCCCCE
Q 018808 265 SREKLARYFELS--TLPTLVIIGPDGKT 290 (350)
Q Consensus 265 ~~~~~~~~~~v~--~~P~~~lid~~G~i 290 (350)
..+.+.||+. .+|.+++++....-
T Consensus 139 --~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 --PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp --HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred --HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 4477789987 89999999965543
|
... |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.038 Score=54.70 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=48.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+.+. .+-.|.+++||+|......+.++....+ ++..-.|....-+ +++..|+
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~------------------------~~~~~~~ 526 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFP------------------------DLKDEYG 526 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccH------------------------HHHHhCC
Confidence 3455 5666789999999988888877777643 2555555544333 6888999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|.++|++++ ||+++..
T Consensus 527 v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 527 IMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ceecCEEEE---CCEEEEe
Confidence 999999998 5666653
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.094 Score=46.02 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=66.8
Q ss_pred ccCCc-eecCCCceeeccc-cCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcC-CCcEEEEEEeCCCCHH-H-HHHh
Q 018808 177 HSRDF-VISSDGRKISVSD-LEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGK-GESFEIVLISLDDEEE-S-FKRD 250 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~-~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vv~v~~d~~~~-~-~~~~ 250 (350)
..|+| ..+++|+.+++.+ ++||+.||..+. .|--.|...- .....+++... +..++++-|++.++.- . +...
T Consensus 100 yFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw--~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~ 177 (252)
T PF05176_consen 100 YFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSW--TSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKL 177 (252)
T ss_pred cCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHH--hhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Confidence 45666 4677888777754 689965554443 3432222211 11233333322 1259999999875432 1 1111
Q ss_pred h-cCC-------CCccccCCch--hHHHHHHHcCCCC--ccEEEEECCCCCEEeccchh
Q 018808 251 L-GSM-------PWLALPFKDK--SREKLARYFELST--LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~-~~~-------~~~~~~~~~~--~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~~~ 297 (350)
+ ..+ .|..+-+..+ ....+.+.+++.. +..+||||++|+|++...|.
T Consensus 178 ~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 178 FMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred HhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCC
Confidence 1 111 1222212121 2457888888754 77899999999999999884
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0055 Score=51.60 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+++.+++.||+.||.+|..+...+..+.+..+ . +.++.+..+.. .++...+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~--~~~~k~~a~~~-----------------------~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--N--AQFLKLEAEEF-----------------------PEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--h--heeeeehhhhh-----------------------hHHHHHHHH
Confidence 67889999999999999999988888887772 2 66776655422 557888889
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+.|+..++ ..|+.+.+-.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~l~~ 88 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDRLSG 88 (227)
T ss_pred hcCceeeee-ecchhhhhhhc
Confidence 999998888 66766655544
|
|
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.047 Score=37.80 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=35.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|.+....|.+ .+ +.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 456888999999988666653 23 4444555553321 133555668889999
Q ss_pred EEEEC
Q 018808 281 LVIIG 285 (350)
Q Consensus 281 ~~lid 285 (350)
+ ++|
T Consensus 54 i-fi~ 57 (72)
T cd03029 54 V-FID 57 (72)
T ss_pred E-EEC
Confidence 7 454
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.037 Score=41.16 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=33.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|.+....|.+. +- .+++ +.+|.+++.. .....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~i---~~~~--vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----GV---NPAV--HEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----CC---CCEE--EEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 4568889999998776655433 21 1444 4444322110 11134555567889999
Q ss_pred EEEEC
Q 018808 281 LVIIG 285 (350)
Q Consensus 281 ~~lid 285 (350)
+| ||
T Consensus 65 Vf-i~ 68 (99)
T TIGR02189 65 VF-VG 68 (99)
T ss_pred EE-EC
Confidence 74 53
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.081 Score=36.71 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=35.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||.|++....|.+ .+ +.+..++++.+.+. ..++.+..+-..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 446788999999988776654 33 44555565543321 245666677778888
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 55 v~i 57 (73)
T cd03027 55 IFF 57 (73)
T ss_pred EEE
Confidence 743
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.031 Score=44.75 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHh
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK 227 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~ 227 (350)
.++++|+.|+..+||+|+.+.+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 46789999999999999999999998877664
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.13 Score=41.12 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=65.4
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHH-HhcCCCcEEEEE-EeCCCC----HHHHHHhh----cCCCC
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEK-LKGKGESFEIVL-ISLDDE----EESFKRDL----GSMPW 256 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~vv~-v~~d~~----~~~~~~~~----~~~~~ 256 (350)
.+..+...+.||+-+|...|-.-..-..-.|.+..+.+. |+.. +++..+ |+.|+. ---.+..+ ++++|
T Consensus 27 y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~ 104 (160)
T PF09695_consen 27 YQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW 104 (160)
T ss_pred ccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence 345556678899999988876544433444556555544 4443 365554 455541 11222222 23455
Q ss_pred ccccCCchhHHHHHHHcCCCC-ccEEEEECCCCCEEeccchhh
Q 018808 257 LALPFKDKSREKLARYFELST-LPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~-~P~~~lid~~G~i~~~~~~~~ 298 (350)
-.+ ..|.++.+.+.+++.. --.++++|++|+|++...|.+
T Consensus 105 s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~L 145 (160)
T PF09695_consen 105 SQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGAL 145 (160)
T ss_pred cEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECCCC
Confidence 444 3455556777777653 357889999999999999866
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.039 Score=46.24 Aligned_cols=91 Identities=21% Similarity=0.394 Sum_probs=63.2
Q ss_pred CceeccCCceeecCCC-CCc--EEEE-E-ecC----CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 21 DFLIRSNGDQVKLDSL-KGK--IGLY-F-SAS----WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 21 ~f~~~~~g~~~~l~~~-~gk--~~v~-F-~~~----~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+..++....+.||++| .|+ ++|| | +.+ .|+-|...+.++.-....+... ++.++.|+- ...+++..+..
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~-dv~lv~VsR-APl~~l~~~k~ 131 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH-DVTLVAVSR-APLEELVAYKR 131 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc-CceEEEEec-CcHHHHHHHHH
Confidence 3445444558899986 566 5555 3 334 4999999999998888888777 488888874 46788999999
Q ss_pred cCCCcccccCChhhHHHHHhhcCC
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++|...-+++.+. .+-+.|.+
T Consensus 132 rmGW~f~w~Ss~~s--~Fn~Df~v 153 (247)
T COG4312 132 RMGWQFPWVSSTDS--DFNRDFQV 153 (247)
T ss_pred hcCCcceeEeccCc--cccccccc
Confidence 99998333443332 45555654
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.09 Score=37.46 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=34.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||+|......|. +.| +.+-.++++.+++. .+..+..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~~~--------------------~~~~~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVPEA--------------------AETLRAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCHHH--------------------HHHHHHcCCCCcCE
Confidence 45688899999988766663 345 55666666654332 11223357889999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
|
|
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.13 Score=35.48 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=38.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..+|||+|.+....|.+ . .+.+..++++.+.+ ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~-~i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N-GISYEEIPLGKDIT---------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c-CCCcEEEECCCChh---------------------HHHHHHHhCCCCcCe
Confidence 566888999999997766653 2 25566666654431 114455568889999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
+++ +|+.+
T Consensus 54 ifi---~g~~i 61 (72)
T cd03029 54 VFI---DGELI 61 (72)
T ss_pred EEE---CCEEE
Confidence 854 45554
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.041 Score=44.02 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=30.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEE
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i 77 (350)
.++ +++.|+..+||+|..+.+.+.++..+++ ++.++..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEE
Confidence 466 8999999999999999999998887764 3445544
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.086 Score=38.37 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=37.5
Q ss_pred CCCEEEEEEec----cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 196 EGKTIGLYFSM----SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 196 ~gk~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
+++.|+|+--. +|||+|......|.+. + +.+..++++.+.+ ...++.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHH-------------------HHHHHHH
Confidence 34456665432 6999998876666443 2 3333444443322 1245666
Q ss_pred HcCCCCccEEEEECCCCCEE
Q 018808 272 YFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~ 291 (350)
..|...+|.+| || |+.+
T Consensus 58 ~~g~~tvP~vf-i~--g~~i 74 (90)
T cd03028 58 YSNWPTFPQLY-VN--GELV 74 (90)
T ss_pred HhCCCCCCEEE-EC--CEEE
Confidence 67888999974 44 5443
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.083 Score=36.57 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=33.2
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEE
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 281 (350)
..|..++||+|+.....|.+ .+ +.+-.++++.+.+. ..++ +..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHH-HHcCCcccCEE
Confidence 45788999999988777753 34 44555555544322 1223 34588889996
Q ss_pred EE
Q 018808 282 VI 283 (350)
Q Consensus 282 ~l 283 (350)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 44
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.38 Score=37.24 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..|+|+|-|...|=|.|..+-..|.+++++.+.- ..|..|..++- ..+.+.|.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V-----------------------pdfn~~yel 72 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV-----------------------PDFNQMYEL 72 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT-----------------------HCCHHHTTS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc-----------------------hhhhccccc
Confidence 4689999999999999999999999999998764 56666666632 235677888
Q ss_pred CCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCe
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 341 (350)
. .|.++++==+++-+....|.. .-..+.|.-+..+++..+.+..-.+......++....+|
T Consensus 73 ~-dP~tvmFF~rnkhm~vD~Gtg----nnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 73 Y-DPCTVMFFFRNKHMMVDFGTG----NNNKINWAFEDKQEFIDIIETIYRGARKGKGIVVSPKDY 133 (133)
T ss_dssp --SSEEEEEEETTEEEEEESSSS----SSSSBCS--SCHHHHHHHHHHHHHHHHTT-SEEE-SS-G
T ss_pred C-CCeEEEEEecCeEEEEEecCC----CccEEEEEcCcHHHHHHHHHHHHHHhhcCCeeEeCCCCC
Confidence 7 776544422344443333311 112466777777777777776555555555555555554
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.16 Score=36.21 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=39.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|..+|||+|.+....|.+. .+.+..++++.+.+ ....+.+..+...+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAA--------------------KREEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 4566779999999987776642 25555666665532 1224556667788997
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 56 i~~---~g~~ig 64 (83)
T PRK10638 56 IFI---DAQHIG 64 (83)
T ss_pred EEE---CCEEEe
Confidence 755 466654
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.17 Score=37.42 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=38.4
Q ss_pred EEEEEec----CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 40 IGLYFSA----SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 40 ~~v~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++|+-.. +|||+|.+....|.++ .+.+..++++.+.+ ....+.+..|.
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~--------------------~~~~l~~~tg~ 65 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPE--------------------IRQGIKEYSNW 65 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHH--------------------HHHHHHHHhCC
Confidence 5655442 8999999977766543 24455566654432 22355555677
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
..+|.+++ +|+.+.
T Consensus 66 ~tvP~vfi---~g~~iG 79 (97)
T TIGR00365 66 PTIPQLYV---KGEFVG 79 (97)
T ss_pred CCCCEEEE---CCEEEe
Confidence 88898876 466543
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.094 Score=41.37 Aligned_cols=103 Identities=15% Similarity=0.254 Sum_probs=69.0
Q ss_pred eeeccc-cCCCEEEEE-EeccCCccChh-hHHHHHHHHHHHhcCCCcE-EEEEEeCCCCHHHHHHhhcCCCCc-cccCCc
Q 018808 189 KISVSD-LEGKTIGLY-FSMSSYKASAE-FTPRLVEVYEKLKGKGESF-EIVLISLDDEEESFKRDLGSMPWL-ALPFKD 263 (350)
Q Consensus 189 ~v~l~~-~~gk~vlv~-f~~~~C~~C~~-~~~~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~ 263 (350)
.++.++ ++||.|+|+ .-+...|.|.. .+|...+++.+++.+| + +|+.|+++ +.--+.++.+....- ++.++.
T Consensus 28 ~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kG--VD~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~ 104 (165)
T COG0678 28 DVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKG--VDEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIP 104 (165)
T ss_pred cccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcC--CceEEEEEeC-cHHHHHHHHHhcCCCccEEEec
Confidence 344444 578765553 34557788877 8999999999999988 3 46667777 444445555443322 566778
Q ss_pred hhHHHHHHHcCC-----------CCccEEEEECCCCCEEeccc
Q 018808 264 KSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 264 ~~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 295 (350)
|.+.++.+.+|. ++.-...++ .||.|..-..
T Consensus 105 Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 105 DGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred CCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEe
Confidence 888888888864 445556677 8888776554
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.1 Score=38.61 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred CEEEEEEe----ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 198 KTIGLYFS----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 198 k~vlv~f~----~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..|+|+-. .+|||+|......|.+. + +.+..+.++++.+. ..++.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~~-------------------~~~l~~~t 63 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPEI-------------------RQGIKEYS 63 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHHH-------------------HHHHHHHh
Confidence 44555544 38999998776666443 2 33444555433221 23455666
Q ss_pred CCCCccEEEEEC
Q 018808 274 ELSTLPTLVIIG 285 (350)
Q Consensus 274 ~v~~~P~~~lid 285 (350)
|...+|.+| ||
T Consensus 64 g~~tvP~vf-i~ 74 (97)
T TIGR00365 64 NWPTIPQLY-VK 74 (97)
T ss_pred CCCCCCEEE-EC
Confidence 778899886 44
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.011 Score=50.06 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
-.++.|+++|||.|....+.+..++.--.+-+ +.+-.|.+-.+ --+.-+|=+.++
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n-----------------------pgLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN-----------------------PGLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec-----------------------cccceeeEEEec
Confidence 35678999999999999999988876655555 55555543311 125667778999
Q ss_pred cEEEEECCCCCEEec
Q 018808 279 PTLVIIGPDGKTLHS 293 (350)
Q Consensus 279 P~~~lid~~G~i~~~ 293 (350)
|++|-+ .+|.....
T Consensus 96 ptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRRY 109 (248)
T ss_pred ceEEEe-eccccccc
Confidence 999999 99976643
|
|
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=36.84 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=36.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||+|......|.+. + +.+..++++.+.+. ..++.+..|...+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------g--i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------G--VSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4467789999998877766542 3 33444555533221 234566668889997
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 744 36555
|
|
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.21 Score=36.32 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=34.6
Q ss_pred CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECC
Q 018808 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (350)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (350)
+|||+|......|.+. .+.+-.++++.+.+ ....+.+..|...+|.+++
T Consensus 21 ~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~--------------------~~~~l~~~~g~~tvP~vfi--- 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL--------GVDFGTFDILEDEE--------------------VRQGLKEYSNWPTFPQLYV--- 69 (90)
T ss_pred CCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHH--------------------HHHHHHHHhCCCCCCEEEE---
Confidence 6999999977666543 14455555554432 2336666678888999855
Q ss_pred CCeEEe
Q 018808 127 NGKVLS 132 (350)
Q Consensus 127 ~G~v~~ 132 (350)
+|+.+.
T Consensus 70 ~g~~iG 75 (90)
T cd03028 70 NGELVG 75 (90)
T ss_pred CCEEEe
Confidence 466543
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.087 Score=40.24 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 219 LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 219 l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
|.+...++.+.| +.++.|.+.+ .+..++|++... .++++..|++..+-+.+|+
T Consensus 2 L~~~~~~l~~~g--v~lv~I~~g~-~~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAAG--VKLVVIGCGS-PEGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHcC--CeEEEEEcCC-HHHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 445566777777 8899998874 434777776544 5777777777777777765
|
|
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.098 Score=42.36 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
..+-.-..+++|+.|+...||+|..+.+.+.++.+++-+.| ++.++.+.+-
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 33445566899999999999999999999999999983332 4888888773
|
... |
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.068 Score=44.02 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+..-|++.||-+.-..|+-+-..|..++..+-+ ..++-|+.... + -+..+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~--------------P---------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA--------------P---------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC--------------c---------eeeeeeee
Confidence 456899999999888999999999999988865 56888887632 1 26789999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.-+|++.++ .+|+.+.+.+|
T Consensus 136 kVLP~v~l~-k~g~~~D~iVG 155 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDYVVG 155 (211)
T ss_pred eEeeeEEEE-EcCEEEEEEee
Confidence 999999999 99999988877
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.11 Score=36.81 Aligned_cols=20 Identities=5% Similarity=-0.109 Sum_probs=15.4
Q ss_pred EEEEeccCCccChhhHHHHH
Q 018808 201 GLYFSMSSYKASAEFTPRLV 220 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~ 220 (350)
+..|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999988766664
|
|
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.089 Score=51.76 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=50.0
Q ss_pred CCCEEEEEEeccCCccChhhH------HHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFT------PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
.+|+++|...++||.+|.-|. |.+.++.++ . +|.|-+|..+. |.....-..+
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~-----FV~IKVDREER--------------PDvD~~Ym~~ 99 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---N-----FVPVKVDREER--------------PDVDSLYMNA 99 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---C-----ceeeeEChhhc--------------cCHHHHHHHH
Confidence 578999999999999999887 344444332 2 56666664321 1111111233
Q ss_pred HHHc-CCCCccEEEEECCCCCEEecc
Q 018808 270 ARYF-ELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 270 ~~~~-~v~~~P~~~lid~~G~i~~~~ 294 (350)
++.. |-.++|-++++-|||+..+..
T Consensus 100 ~q~~tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 100 SQAITGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred HHHhccCCCCceeEEECCCCceeeee
Confidence 3333 456899999999999998654
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.14 Score=50.20 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+.+. -+..|.++.||+|+.....+.++...-+ ++..-.|..... .+++..|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~------------------------~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALF------------------------QDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HhHHHhcC
Confidence 3455 7888999999999998888888777533 355555543333 36888999
Q ss_pred CCCcceEEEECCCCeEEe
Q 018808 115 VMGIPHLVILDENGKVLS 132 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~ 132 (350)
+.++|++++ +|+.++
T Consensus 167 v~~VP~~~i---~~~~~~ 181 (517)
T PRK15317 167 IMAVPTVFL---NGEEFG 181 (517)
T ss_pred CcccCEEEE---CCcEEE
Confidence 999999987 344444
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.18 Score=34.87 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=34.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
..|..++||+|+.....|.+ . .+.+-.++++.+.+. ...+.. .|..++|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~-~i~~~~~di~~~~~~--------------------~~~~~~-~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H-GIAFEEINIDEQPEA--------------------IDYVKA-QGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C-CCceEEEECCCCHHH--------------------HHHHHH-cCCcccCEE
Confidence 45777999999998877753 2 356666676655431 113333 477889997
Q ss_pred EE
Q 018808 122 VI 123 (350)
Q Consensus 122 ~l 123 (350)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 65
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.25 Score=35.11 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=34.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|.-++||+|.+....|.+ ++ +.+..+.++..... +....+.+..|.+.+|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g-~~~~~i~~~~~~~~------------------~~~~~~~~~~g~~tvP~ 56 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KG-VDYEEIDVDDDEPE------------------EAREMVKRGKGQRTVPQ 56 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cC-CCcEEEEecCCcHH------------------HHHHHHHHhCCCCCcCE
Confidence 456777899999987766652 32 55555555444310 11123444448899999
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 57 I~i 59 (80)
T COG0695 57 IFI 59 (80)
T ss_pred EEE
Confidence 888
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.4 Score=37.91 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=70.1
Q ss_pred hhcCccCCceecc---C-----CceeecCCC-CCcEEEEEec--CCChhhhh-hhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 14 LLSSSARDFLIRS---N-----GDQVKLDSL-KGKIGLYFSA--SWCGPCQR-FTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 14 ~~g~~~p~f~~~~---~-----g~~~~l~~~-~gk~~v~F~~--~~C~~C~~-~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
.+|++.|..++.. + -..++..++ +||.+|-|-. ...|.|.. .+|.+.+++.++.+++-=.++.|++++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND 83 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVND 83 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCc
Confidence 4699999988832 1 234555564 6675555544 45789974 899999999999998744566667665
Q ss_pred C--HHHHHhHHhcCCCcccccCChhhHHHHHhhc-----------CCCCcceEEEECCCCeEEec
Q 018808 82 D--DEAFKGYFSKMPWLAVPFSDSETRDKLDELF-----------KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~v~~~P~~~lid~~G~v~~~ 133 (350)
. ...|.+.....+ .+-+. +|-+.++++.. |+++.-+..++ .||.|.+-
T Consensus 84 ~FVm~AWak~~g~~~--~I~fi-~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~ 144 (165)
T COG0678 84 AFVMNAWAKSQGGEG--NIKFI-PDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKL 144 (165)
T ss_pred HHHHHHHHHhcCCCc--cEEEe-cCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEE
Confidence 3 223333322221 11111 22233555544 35666777777 78888763
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.42 Score=33.99 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+.-|..+|||+|.+....|.+ ++ +.+-.++++.+++.. ..+. ..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g-I~~~~idi~~~~~~~--------------------~~~~-~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG-FDFEMINVDRVPEAA--------------------ETLR-AQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHHH-HcCCCCcCE
Confidence 456778999999997776643 33 667777777654321 1232 247788998
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 866
|
|
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.64 Score=34.78 Aligned_cols=65 Identities=28% Similarity=0.463 Sum_probs=40.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-+|.|.-+||++|.+....| ..+.. ...++.+.-+.+..+++ +.+.+.-+.+.+|
T Consensus 15 ~VVifSKs~C~~c~~~k~ll----~~~~v--~~~vvELD~~~~g~eiq-------------------~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELL----SDLGV--NPKVVELDEDEDGSEIQ-------------------KALKKLTGQRTVP 69 (104)
T ss_pred CEEEEECCcCchHHHHHHHH----HhCCC--CCEEEEccCCCCcHHHH-------------------HHHHHhcCCCCCC
Confidence 57888899999999844333 33332 34555554443333333 3455555667899
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.++| +|+.+.
T Consensus 70 ~vFI---~Gk~iG 79 (104)
T KOG1752|consen 70 NVFI---GGKFIG 79 (104)
T ss_pred EEEE---CCEEEc
Confidence 9888 677663
|
|
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.34 Score=33.32 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=46.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
+-|++.-||.|.....+|.++ ++.+=.|++-.+..++++|+.-.. ..+-. .=.+.+|..++|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl--------~v~yd~VeIt~Sm~NlKrFl~lRD--s~~~F------d~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL--------NVDYDFVEITESMANLKRFLHLRD--SRPEF------DEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHc--------CCCceeeehhhhhhhHHHHHhhhc--cchhH------HhhhhcCcccceEE
Confidence 458888999999877777654 233334444557777888876432 00000 22456788899988
Q ss_pred EEECCCCeEEe
Q 018808 122 VILDENGKVLS 132 (350)
Q Consensus 122 ~lid~~G~v~~ 132 (350)
.+ ++|+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 77 6777764
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.15 Score=42.77 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=67.1
Q ss_pred ecCCCceeeccc-cCCCEEEEE---E----eccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 183 ISSDGRKISVSD-LEGKTIGLY---F----SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 183 ~~~~g~~v~l~~-~~gk~vlv~---f----~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
.+.+| ..+|.+ |.||--||. + |..-||-|...+..+......+...+ +.+++|+-- ..+++..+...+
T Consensus 58 e~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~rm 133 (247)
T COG4312 58 ETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKRRM 133 (247)
T ss_pred ecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHHhc
Confidence 34555 577777 477744433 2 34479999999999988888888877 999999865 778889999999
Q ss_pred CCccccCCchhHHHHHHHcCC
Q 018808 255 PWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|- ||..+..+..+-+.|.+
T Consensus 134 GW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 134 GWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred CCc-ceeEeccCccccccccc
Confidence 987 88888777778888865
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.17 Score=41.66 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~ 239 (350)
.+++.|+.|+...||+|+.+.+.+.++..+++.+ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 5789999999999999999999999999888543 5554444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.17 Score=38.66 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=17.0
Q ss_pred CEEEEEEec----cCCccChhhHHHHHHH
Q 018808 198 KTIGLYFSM----SSYKASAEFTPRLVEV 222 (350)
Q Consensus 198 k~vlv~f~~----~~C~~C~~~~~~l~~~ 222 (350)
..|+|+--+ +|||+|......|.+.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 455555444 5999999887766554
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.75 Score=35.12 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=37.0
Q ss_pred EEEEEec----CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 40 IGLYFSA----SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 40 ~~v~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++|+--. +|||+|.+....|..+ . +.+-.++++.+.+ ....+.+.-|-
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~----i~~~~idi~~d~~--------------------~~~~l~~~sg~ 68 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSAC----G----ERFAYVDILQNPD--------------------IRAELPKYANW 68 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHc----C----CCceEEEecCCHH--------------------HHHHHHHHhCC
Confidence 5555443 5999999977666543 2 2233344444432 12245555577
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+.+|.+++ +|+.+.
T Consensus 69 ~TVPQIFI---~G~~IG 82 (115)
T PRK10824 69 PTFPQLWV---DGELVG 82 (115)
T ss_pred CCCCeEEE---CCEEEc
Confidence 88999888 677664
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.38 Score=47.18 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+.+. -+-.|..+.||+|+.....+.++....+ ++..-.+..... .++..+|+
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~------------------------~~~~~~~~ 167 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALF------------------------QDEVEALG 167 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HHHHHhcC
Confidence 4556 7888999999999988877877766643 244444433322 26788899
Q ss_pred CCCcceEEE
Q 018808 115 VMGIPHLVI 123 (350)
Q Consensus 115 v~~~P~~~l 123 (350)
+.++|++++
T Consensus 168 v~~VP~~~i 176 (515)
T TIGR03140 168 IQGVPAVFL 176 (515)
T ss_pred CcccCEEEE
Confidence 999999987
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.44 Score=35.65 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=34.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+|.|..+|||+|...- ++...+. +....+.+|..++ .......+.+.-|...+|.
T Consensus 16 VVifSKs~C~~c~~~k----~ll~~~~-----v~~~vvELD~~~~----------------g~eiq~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAK----ELLSDLG-----VNPKVVELDEDED----------------GSEIQKALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHH----HHHHhCC-----CCCEEEEccCCCC----------------cHHHHHHHHHhcCCCCCCE
Confidence 3458889999998743 3333333 3334444453211 1112233444456678998
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+||= |+.+
T Consensus 71 vFI~---Gk~i 78 (104)
T KOG1752|consen 71 VFIG---GKFI 78 (104)
T ss_pred EEEC---CEEE
Confidence 8874 6655
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.65 Score=36.99 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=50.7
Q ss_pred hhcCccCCceec---c-----CCceeecCCC-CCcEEEEE--ecCCChhh-hhhhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 14 LLSSSARDFLIR---S-----NGDQVKLDSL-KGKIGLYF--SASWCGPC-QRFTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 14 ~~g~~~p~f~~~---~-----~g~~~~l~~~-~gk~~v~F--~~~~C~~C-~~~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
-+|+..|+.++. . .+.+++++++ +||.+|.| -....|.| +...|.+.+-.++++.++-=+++.+++|+
T Consensus 10 ~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnD 89 (171)
T KOG0541|consen 10 AVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVND 89 (171)
T ss_pred cccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCc
Confidence 358889983322 2 2238888885 77733334 34456774 68899999999999988756677778775
Q ss_pred CHHHHHhHHhcC
Q 018808 82 DDEAFKGYFSKM 93 (350)
Q Consensus 82 ~~~~~~~~~~~~ 93 (350)
. -.+..|.+.+
T Consensus 90 p-Fv~~aW~k~~ 100 (171)
T KOG0541|consen 90 P-FVMKAWAKSL 100 (171)
T ss_pred H-HHHHHHHhhc
Confidence 4 2333444333
|
|
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.038 Score=46.93 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=47.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 37 ~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
.|..++.|+++|||.|....|.+.+...--.+ -.+.+..|.+.... -+.-.|-+.
T Consensus 39 ~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~np------------------------gLsGRF~vt 93 (248)
T KOG0913|consen 39 TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNP------------------------GLSGRFLVT 93 (248)
T ss_pred chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEecc------------------------ccceeeEEE
Confidence 33388999999999999999988765433222 23555555433222 355567788
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
..|++|=+ .+|....+
T Consensus 94 aLptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 94 ALPTIYHV-KDGEFRRY 109 (248)
T ss_pred ecceEEEe-eccccccc
Confidence 99999988 78876543
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.94 Score=35.46 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=48.9
Q ss_pred CEEEEEEecc--CCc-cCh-hhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 198 KTIGLYFSMS--SYK-ASA-EFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 198 k~vlv~f~~~--~C~-~C~-~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..-+|.|... .|. .+. .....|.++++++++++ +.++.++.++. ..+.+.|
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~-----------------------~~~~~~f 75 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQ-----------------------LDLEEAL 75 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCccc-----------------------HHHHHHc
Confidence 4666666543 243 233 34678889999998876 88888877642 3378889
Q ss_pred CCC--CccEEEEECCCCCEEec
Q 018808 274 ELS--TLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 274 ~v~--~~P~~~lid~~G~i~~~ 293 (350)
|+. .+|++++++.++. .+.
T Consensus 76 gl~~~~~P~v~i~~~~~~-KY~ 96 (130)
T cd02983 76 NIGGFGYPAMVAINFRKM-KFA 96 (130)
T ss_pred CCCccCCCEEEEEecccC-ccc
Confidence 985 4999999998765 444
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=90.27 E-value=6.8 Score=30.01 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=63.7
Q ss_pred ecCCCCCc--EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHH
Q 018808 32 KLDSLKGK--IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 32 ~l~~~~gk--~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
.|++++++ ++|.|--+ .-+.-......|.+-...+.++ ++.++.+.-+..... ....+......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~------------~~~~~~~~~~~ 68 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSP------------GKPLSPEDIQA 68 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccc------------cCcCCHHHHHH
Confidence 36677887 66666533 3344556666677766677777 477777743332210 01222344457
Q ss_pred HHhhcCCCC-cceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHH
Q 018808 109 LDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (350)
Q Consensus 109 l~~~~~v~~-~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~ 160 (350)
+.+.|++.. .-+++|++++|.+-.+. ..|++.+.+-..++.
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r~-----------~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLRW-----------PEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEec-----------CCCCCHHHHHHHHhC
Confidence 888888653 45889999999876541 235666666665553
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.37 Score=41.11 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEE
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVS 78 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~ 78 (350)
..|+ .++.|+...||+|..+.+.+ ..+.+.++++ +.++.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~--v~~~~~~ 79 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG--TKMTKYH 79 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC--CeEEEec
Confidence 3578 89999999999999998866 7778887654 4555443
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.74 Score=38.12 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=55.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
|++.||-+.-.-|+-+...|..|++++-+ .+|+-|+....+ -++..++|...|
T Consensus 87 VVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~P------------------------Flv~kL~IkVLP 139 (211)
T KOG1672|consen 87 VVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAP------------------------FLVTKLNIKVLP 139 (211)
T ss_pred EEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCc------------------------eeeeeeeeeEee
Confidence 99999999888999999999999998764 679999876654 477789999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
++.++ .+|..+.+
T Consensus 140 ~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 140 TVALF-KNGKTVDY 152 (211)
T ss_pred eEEEE-EcCEEEEE
Confidence 99999 88876654
|
|
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.8 Score=31.45 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=53.5
Q ss_pred ccccCCCE-EEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 192 VSDLEGKT-IGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 192 l~~~~gk~-vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
|++++++. +||.|- ...-+.-...+..|.+....+.++. +.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 45565543 333333 2233344556666666666777776 7777764332111 0112223345678
Q ss_pred HHHcCCCC-ccEEEEECCCCCEEeccch
Q 018808 270 ARYFELST-LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 270 ~~~~~v~~-~P~~~lid~~G~i~~~~~~ 296 (350)
.+.|++.. --+.+||++||.+..++..
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r~~~ 97 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLRWPE 97 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEecCC
Confidence 88998753 4588999999999888554
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.1 Score=35.67 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=64.7
Q ss_pred eeecccc-CCCEEEEE-EeccCCcc-ChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCC-CccccCCch
Q 018808 189 KISVSDL-EGKTIGLY-FSMSSYKA-SAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP-WLALPFKDK 264 (350)
Q Consensus 189 ~v~l~~~-~gk~vlv~-f~~~~C~~-C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~-~~~~~~~~~ 264 (350)
++.++++ +||-++|+ .-+...|. |+..+|-+.+-.++++.+|- =+|+.|++| ++-.+..+.+.++ .-.+.+..|
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGV-d~iicvSVn-DpFv~~aW~k~~g~~~~V~f~aD 111 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGV-DEIICVSVN-DPFVMKAWAKSLGANDHVKFVAD 111 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCC-cEEEEEecC-cHHHHHHHHhhcCccceEEEEec
Confidence 6777764 78655553 33446666 67889999999999999882 256677777 4544455544332 123444556
Q ss_pred hHHHHHHHcCC-----------CCccEEEEECCCCCEEeccch
Q 018808 265 SREKLARYFEL-----------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 265 ~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~~ 296 (350)
...++.+.+|+ +.--.-+++ .||++......
T Consensus 112 ~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE 153 (171)
T KOG0541|consen 112 PAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVE 153 (171)
T ss_pred CCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEec
Confidence 66666666553 222233455 88888876654
|
|
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.93 Score=34.03 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=44.5
Q ss_pred EEEEEEeccCC---ccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 199 TIGLYFSMSSY---KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 199 ~vlv~f~~~~C---~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..++ |++..| +-|....-.|-++.+.+... +....|.. ....++..+||+
T Consensus 28 ~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~---~~~avv~~-----------------------~~e~~L~~r~gv 80 (107)
T PF07449_consen 28 DAVL-FFAGDPARFPETADVAVILPELVKAFPGR---FRGAVVAR-----------------------AAERALAARFGV 80 (107)
T ss_dssp CEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTS---EEEEEEEH-----------------------HHHHHHHHHHT-
T ss_pred cEEE-EECCCCCcCcccccceeEcHHHHHhhhCc---cceEEECc-----------------------hhHHHHHHHhCC
Confidence 3444 444444 45555444666677777665 55444431 123679999999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
..+|+++++ ++|+.+....|
T Consensus 81 ~~~PaLvf~-R~g~~lG~i~g 100 (107)
T PF07449_consen 81 RRWPALVFF-RDGRYLGAIEG 100 (107)
T ss_dssp TSSSEEEEE-ETTEEEEEEES
T ss_pred ccCCeEEEE-ECCEEEEEecC
Confidence 999999999 99988866544
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=88.54 E-value=3 Score=31.98 Aligned_cols=61 Identities=18% Similarity=0.529 Sum_probs=46.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEE-ECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV-SGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
..| +++-|-..|-|.|..+-..|..+.+++.+ +..+.+ .+++.+ .+-+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~IylvdideV~------------------------~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDIDEVP------------------------DFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEecchhh------------------------hhhhhhc
Confidence 446 88889999999999999999999999874 444443 455443 5777789
Q ss_pred CCCcceEEEE
Q 018808 115 VMGIPHLVIL 124 (350)
Q Consensus 115 v~~~P~~~li 124 (350)
+...|++.++
T Consensus 75 l~~p~tvmfF 84 (142)
T KOG3414|consen 75 LYDPPTVMFF 84 (142)
T ss_pred ccCCceEEEE
Confidence 8888866654
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.42 E-value=1.3 Score=30.51 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEE
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 281 (350)
..|++..||-|......|.++.-. ++. |.+-.+-..+++|+.-.. .. ..=+-.+..|-.++|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-------yd~--VeIt~Sm~NlKrFl~lRD------s~-~~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-------YDF--VEITESMANLKRFLHLRD------SR-PEFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-------cee--eehhhhhhhHHHHHhhhc------cc-hhHHhhhhcCcccceEE
Confidence 458899999998887777655211 333 334456677788776211 00 01123567788899987
Q ss_pred EEECCCCCEEe
Q 018808 282 VIIGPDGKTLH 292 (350)
Q Consensus 282 ~lid~~G~i~~ 292 (350)
++ .||+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 65 5666663
|
|
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.3 Score=42.13 Aligned_cols=21 Identities=0% Similarity=-0.151 Sum_probs=16.3
Q ss_pred EEEEeccCCccChhhHHHHHH
Q 018808 201 GLYFSMSSYKASAEFTPRLVE 221 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~ 221 (350)
++.|..+|||+|.+.-..|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 567899999999877666544
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.2 Score=37.98 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.|++.|+.|+.-.||+|..+.+.+ ..+.+.+.+. +.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEecc
Confidence 467888999999999999998865 6677776544 44544433
|
|
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.01 E-value=5.5 Score=35.69 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=52.2
Q ss_pred CCCEEEEEEecc----CCccChhhHHHHHHHHHHHhcCCCc-----EEEEEEeCCCCHHHHHHhhcCCCCccccCCchhH
Q 018808 196 EGKTIGLYFSMS----SYKASAEFTPRLVEVYEKLKGKGES-----FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (350)
Q Consensus 196 ~gk~vlv~f~~~----~C~~C~~~~~~l~~~~~~~~~~~~~-----~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
++-.+++.|-|. .|.-|+.+..+++-+++.+...+.. +=+..|..|+ .
T Consensus 59 rNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e-----------------------~ 115 (331)
T KOG2603|consen 59 RNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE-----------------------S 115 (331)
T ss_pred CCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc-----------------------c
Confidence 444677777755 8999999999999999888766421 2233333332 3
Q ss_pred HHHHHHcCCCCccEEEEECCC-CCEE
Q 018808 267 EKLARYFELSTLPTLVIIGPD-GKTL 291 (350)
Q Consensus 267 ~~~~~~~~v~~~P~~~lid~~-G~i~ 291 (350)
.++.+++++...|+++++.|. |+..
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccc
Confidence 568999999999999999765 4444
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=83.80 E-value=3.3 Score=29.24 Aligned_cols=57 Identities=33% Similarity=0.381 Sum_probs=40.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+++.|..+.|+-|......|.++.... .+.+-.|+++++. .+.++|+. .+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~------------------------~l~~~Y~~-~IP 51 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDP------------------------ELFEKYGY-RIP 51 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTH------------------------HHHHHSCT-STS
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCH------------------------HHHHHhcC-CCC
Confidence 367788899999998877776543332 4788888888665 57778884 789
Q ss_pred eEEEEC
Q 018808 120 HLVILD 125 (350)
Q Consensus 120 ~~~lid 125 (350)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 877754
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs | Back alignment and domain information |
|---|
Probab=83.35 E-value=6.4 Score=26.68 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=34.2
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEE
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 282 (350)
.|+..|||+|.+..-.|.+. |-.++++.|+.... ..++.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-------GITVELREVELKNK----------------------PAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEEE
Confidence 46788999998765544322 22267766654321 12345555667788873
Q ss_pred EECCCCCEEe
Q 018808 283 IIGPDGKTLH 292 (350)
Q Consensus 283 lid~~G~i~~ 292 (350)
+.+|..+.
T Consensus 54 --~~~g~~l~ 61 (71)
T cd03060 54 --LGNGTVIE 61 (71)
T ss_pred --ECCCcEEe
Confidence 34576654
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r |
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=83.34 E-value=2.4 Score=30.00 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=39.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
|+.|..+.|+-|......|.++.... + +.+-.|+++++ .++.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~--~~l~~vDI~~d-----------------------~~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---P--FELEEVDIDED-----------------------PELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---T--CEEEEEETTTT-----------------------HHHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---C--ceEEEEECCCC-----------------------HHHHHHhcC-CCCE
Confidence 56788999999988877776653332 2 77888887754 447889996 7998
Q ss_pred EEEEC
Q 018808 281 LVIIG 285 (350)
Q Consensus 281 ~~lid 285 (350)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66654
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=83.25 E-value=14 Score=28.82 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC--CcceEEEECCCCeEE
Q 018808 54 RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHLVILDENGKVL 131 (350)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~v~ 131 (350)
.....|.+++++|+.+. +.+++++.+... .+.+.||+. .+|.+++++.++. .
T Consensus 41 ~~~~~l~~vAk~~kgk~-i~Fv~vd~~~~~------------------------~~~~~fgl~~~~~P~v~i~~~~~~-K 94 (130)
T cd02983 41 KYLEILKSVAEKFKKKP-WGWLWTEAGAQL------------------------DLEEALNIGGFGYPAMVAINFRKM-K 94 (130)
T ss_pred HHHHHHHHHHHHhcCCc-EEEEEEeCcccH------------------------HHHHHcCCCccCCCEEEEEecccC-c
Confidence 45677889999997653 788888776553 477789985 4899999987653 2
Q ss_pred ecCCccceecccCcCCCCChHHHHHHHHHH
Q 018808 132 SDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (350)
Q Consensus 132 ~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~ 161 (350)
|. ....+.+.+.+.++....
T Consensus 95 Y~----------~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 95 FA----------TLKGSFSEDGINEFLREL 114 (130)
T ss_pred cc----------cccCccCHHHHHHHHHHH
Confidence 21 011235677777777653
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=2.8 Score=39.76 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~ 83 (350)
++.|..+|||+|.+....|.+ ++ +.+-.++++.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g-i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND-IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC-CCeEEEECCCCh
Confidence 667889999999987766654 22 556666666544
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=81.20 E-value=19 Score=29.39 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=43.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC--C
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--G 117 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~ 117 (350)
+++.|..............|..+.++++. ++.++.+.++... .+.+.|++. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~------------------------~~~~~~~i~~~~ 151 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFP------------------------RLLKYFGIDEDD 151 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTH------------------------HHHHHTTTTTSS
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhH------------------------HHHHHcCCCCcc
Confidence 44555544556666777777777777754 4777777766332 577788887 8
Q ss_pred cceEEEECCCC
Q 018808 118 IPHLVILDENG 128 (350)
Q Consensus 118 ~P~~~lid~~G 128 (350)
.|.+++++.+.
T Consensus 152 ~P~~vi~~~~~ 162 (184)
T PF13848_consen 152 LPALVIFDSNK 162 (184)
T ss_dssp SSEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 99999999444
|
... |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=80.24 E-value=14 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~ 83 (350)
..| +++-|-..|-|.|.++--.|..+.++++.- ..+..+..+..+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vp 64 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVP 64 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTH
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccch
Confidence 456 888999999999999999999999998752 344445666544
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 350 | ||||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 5e-24 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 2e-14 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 5e-24 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 2e-14 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 5e-24 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 2e-14 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 5e-24 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 2e-14 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 6e-23 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 2e-14 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 4e-21 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 1e-15 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 8e-21 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 4e-15 | ||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 6e-20 | ||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 5e-15 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 6e-20 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 5e-15 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 6e-20 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 5e-15 | ||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 8e-20 | ||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 3e-15 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 1e-18 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 2e-15 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 9e-16 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 3e-08 | ||
| 2ls5_A | 159 | Solution Structure Of A Putative Protein Disulfide | 2e-08 | ||
| 2lja_A | 152 | Solution Structure Of A Putative Thiol-Disulfide Ox | 1e-07 | ||
| 2lrn_A | 152 | Solution Structure Of A Thiol:disulfide Interchange | 3e-07 | ||
| 3kcm_A | 154 | The Crystal Structure Of Thioredoxin Protein From G | 1e-06 | ||
| 2lrt_A | 152 | Solution Structure Of The Uncharacterized Thioredox | 2e-06 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 3e-06 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 2e-04 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 3e-06 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 2e-04 | ||
| 3gl3_A | 152 | Crystal Structure Of A Putative Thiol:disulfide Int | 8e-06 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 3e-05 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 3e-04 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 4e-05 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 2e-04 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 4e-05 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 2e-04 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 4e-05 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 2e-04 | ||
| 2h1g_A | 143 | Resa C74aC77A Length = 143 | 2e-04 | ||
| 2f9s_A | 151 | 2nd Crystal Structure Of A Soluble Domain Of Resa I | 2e-04 | ||
| 3dxb_A | 222 | Structure Of The Uhm Domain Of Puf60 Fused To Thior | 8e-04 | ||
| 1jfu_A | 186 | Crystal Structure Of The Soluble Domain Of Tlpa Fro | 8e-04 |
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide Isomerase From Bacteroides Thetaiotaomicron Length = 159 | Back alignment and structure |
|
| >pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange Protein From Bacteroides Sp. Length = 152 | Back alignment and structure |
|
| >pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 154 | Back alignment and structure |
|
| >pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like Protein Bvu_1432 From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide Interchange Protein Dsbe From Chlorobium Tepidum Length = 152 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1G|A Chain A, Resa C74aC77A Length = 143 | Back alignment and structure |
|
| >pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 151 | Back alignment and structure |
|
| >pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222 | Back alignment and structure |
|
| >pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-52
Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
S L +R +V++ SL GK + YFSASWC P + FTP L E Y++
Sbjct: 2 SGLDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK 61
Query: 71 DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGK 129
+FEV+F + DE+++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G
Sbjct: 62 NFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGD 121
Query: 130 VLS-DGGVEIIREYGVEGYPFT 150
V++ ++++ E +P+
Sbjct: 122 VVTTRARATLVKDPEGEQFPWK 143
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-31
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+ ++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 239 SLDDEEESFKRDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPD-GKTLHSNV- 295
+ D+EE+ F MPWLA+PF + ++ +KL+++F + ++PTL+ + D G + +
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRAR 128
Query: 296 AEAIEEHGVGAFPFTP 311
A +++ FP+
Sbjct: 129 ATLVKDPEGEQFPWKD 144
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 5e-52
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+ + + +R D +DSL GK + YFSASWC PC+ FTP L
Sbjct: 12 SGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLV 71
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E Y + +FE+I S DE+++ F Y++KMPWL++PF++ + L + + V IP
Sbjct: 72 EFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPT 131
Query: 121 LVILD-ENGKVLSDGGV-EIIREYGVEGYPFTVE 152
L+ L+ + G ++ + ++ E +P+ E
Sbjct: 132 LIGLNADTGDTVTTRARHALTQDPMGEQFPWRDE 165
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 4e-32
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 172 SVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE 231
V + + L GKT+ YFS S FTP+LVE YEK
Sbjct: 23 GVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN 82
Query: 232 SFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GK 289
FEI+L S D+EE+ F MPWL++PF +++ E L + + + ++PTL+ + D G
Sbjct: 83 -FEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGD 141
Query: 290 TLHSNVAEAIEEHGVG-AFPFTPE 312
T+ + A+ + +G FP+ E
Sbjct: 142 TVTTRARHALTQDPMGEQFPWRDE 165
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 6e-51
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
S L+ + S +V L SL GK + LYFSASWC PC+ FTP+LAE Y +
Sbjct: 2 SGLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK 61
Query: 71 DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGK 129
+FEV+ +S DE++ F Y+ KMPWLA+PF T +L + F V IP L+ ++ + G
Sbjct: 62 NFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGA 121
Query: 130 VLS-DGGVEIIREYGVEGYPFT 150
++ +I + +P+
Sbjct: 122 IIGTQARTRVIEDPDGANFPWP 143
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-30
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+ S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLI
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPD-GKTLHSNV- 295
S D+ E F G MPWLALPF +S +L + F + ++PTL+ I D G + +
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128
Query: 296 AEAIEEHGVGAFPFT 310
IE+ FP+
Sbjct: 129 TRVIEDPDGANFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 1e-50
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
+++ + L SL GK + YFSASWC P + FTP L + Y + + +FEV+
Sbjct: 8 PYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVML 67
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DG 134
+S DE E FK Y++KMPWLA+PF D + + L F V IP LV ++ ++G +++
Sbjct: 68 ISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQA 127
Query: 135 GVEIIREYGVEGYPFT 150
++++ + +P+
Sbjct: 128 RTMVVKDPEAKDFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 4e-31
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 179 RDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
V+ I++ L GKT+ YFS S S FTP+L++ Y+ + ++FE++LI
Sbjct: 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA-EKKNFEVMLI 68
Query: 239 SLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSNVA 296
S D+ E FK MPWLALPF+D K E L F++ ++PTLV + D G + +
Sbjct: 69 SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQAR 128
Query: 297 EAIEEHGVG-AFPFT 310
+ + FP+
Sbjct: 129 TMVVKDPEAKDFPWP 143
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-41
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 23 LIRSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVS 78
L++ N +V + IG YFSA WC PC+ FTPILA++Y+EL FE+IFVS
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 79 GDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
D ++ Y + WLA+P+ + + + GIP LVI+ ++G ++S G
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRS-GPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 137 EIIREYGVEGY 147
++ G +
Sbjct: 128 GEVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-32
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 182 VISSDGRKISVSDL--EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239
++ + +++ ++ + IG YFS FTP L ++Y +L FEI+ +S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 240 LDDEEESFKRDLG--SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297
D E+ + + WLA+P++ + + ++ +P LVI+ DG + N
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128
Query: 298 AIEEHGVGAF 307
++ G AF
Sbjct: 129 EVQSLGPRAF 138
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-29
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV--YNELSRQGDFEV 74
A DF + +GD ++ LK + L+F C C++F + AE+ + E+ G V
Sbjct: 7 AADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRV 66
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-D 133
+ + DE+ E + MP + + + +L+ + P + +LD +V+ D
Sbjct: 67 LAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126
Query: 134 GGVEIIREY 142
+E + +Y
Sbjct: 127 TSMEQLIDY 135
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-15
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEI 235
DF ++ G +S L+ + L+F +F E E ++ +
Sbjct: 9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRV 66
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTLHSN 294
+ I D+ E + MP + +K+ + + + +++ PT+ ++ + + +
Sbjct: 67 LAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126
Query: 295 V-AEAIEE 301
E + +
Sbjct: 127 TSMEQLID 134
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-28
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVY--NELSRQGDFEV 74
A +F +G + L + L+ + C C L N + +V
Sbjct: 11 ALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKV 70
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-D 133
+ + DE+ + +K + + D E K L+ + IP L +LD+N VL D
Sbjct: 71 LSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130
Query: 134 GGVEIIREY 142
++ + +Y
Sbjct: 131 ATLQKVEQY 139
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-12
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEI 235
+F G K ++ + L+ + A AE L + K ++
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKV 70
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTLHSN 294
+ I D+E + +K+ DK K ++L +PTL ++ + L +
Sbjct: 71 LSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130
Query: 295 V-AEAIEE 301
+ +E+
Sbjct: 131 ATLQKVEQ 138
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 4e-23
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFE 73
+ SA F NG V L LKGK I + A+WCGPC+ P L E+ + + +
Sbjct: 7 NPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD-IH 65
Query: 74 VIFVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ +S D++ +A++ +K + + + T + + + GIP ++LD +GK++
Sbjct: 66 FVSLSCDKNKKAWENMVTKDQLKGIQLHMG---TDRTFMDAYLINGIPRFILLDRDGKII 122
Query: 132 SDGGVEIIREYGVEGYPFTVERIKEM 157
S P T E+ E+
Sbjct: 123 S-------ANMTRPSDPKTAEKFNEL 141
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 6e-14
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F +G+ +S++DL+GK I + A+ E P L E+ EK GK
Sbjct: 12 SFSYPDINGKTVSLADLKGKYIYIDVW-----ATWCGPCRGEL-PALKELEEKYAGKD-- 63
Query: 233 FEIVLISLDDEEESFKRDLGS--MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
V +S D +++++ + + + L + ++ +P +++ DGK
Sbjct: 64 IHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDR--TFMDAYLINGIPRFILLDRDGKI 121
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAEL 317
+ +N+ + P T EKF EL
Sbjct: 122 ISANM-------TRPSDPKTAEKFNEL 141
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-22
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A + + + G L ++ K L+F S CG CQ+ TP L + + + +G +V
Sbjct: 11 APNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG-IQVYA 69
Query: 77 VSGDEDDEAFKGYFSK---MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ + DE + + WL V DS+ + + P L +LD+N +++
Sbjct: 70 ANIERKDEEWLKFIRSKKIGGWLNV--RDSKNHTDFKITYDIYATPVLYVLDKNKVIIA 126
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-14
Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 180 DFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+ + + G + D++ K L+F S + TP+L + + K + KG ++
Sbjct: 13 NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAA 70
Query: 239 SLDDEEESFKR---DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
+++ ++E + + WL + K+ +++ P L ++ + + +
Sbjct: 71 NIERKDEEWLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI 129
Query: 296 -AEAIEE 301
E +++
Sbjct: 130 GYENLDD 136
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-22
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
+S D L G+ L LKGK + + F+ L E+YN+ + QG FE+
Sbjct: 13 ASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEI 71
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+S D D+ +K +PW+ V + L+ V +P + +++ N ++ +
Sbjct: 72 YQISLDGDEHFWKTSADNLPWVCV-RDANGAYSSYISLYNVTNLPSVFLVNRNNELSA 128
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-17
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
D + G S++DL+GK + + F++ + SA L E+Y K +G FEI I
Sbjct: 17 DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQI 74
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK--------- 289
SLD +E +K ++PW+ + + + + ++ LP++ ++ + +
Sbjct: 75 SLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIK 134
Query: 290 TLHSNVAEAIEEH 302
L + + +E H
Sbjct: 135 DLDEAIKKLLEGH 147
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 5e-22
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A I G+ V L+ KGK + + F + C C++ TP L + YN +G F +
Sbjct: 9 APAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG-FTIYG 67
Query: 77 VSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
VS D +E +K + W V + + E + ++G PH++++D GK+++
Sbjct: 68 VSTDRREEDWKKAIEEDKSYWNQVL-LQKDDVKDVLESYCIVGFPHIILVDPEGKIVA 124
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 6e-14
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
I G +S++D +GK + + F + E P L++ Y K KG
Sbjct: 11 AITGIDLKGNSVSLNDFKGKYVLVDFW-----FAGCSWCRKET-PYLLKTYNAFKDKG-- 62
Query: 233 FEIVLISLDDEEESFKRDLG--SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
F I +S D EE +K+ + W + + + + + + P ++++ P+GK
Sbjct: 63 FTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKI 122
Query: 291 LHSNV-AEAIEE 301
+ + + +
Sbjct: 123 VAKELRGDDLYN 134
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-20
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 19 ARDF-LIRSNGDQVKL--DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
A F L G+++ + + + + L F ASWC P L + E + +F +
Sbjct: 11 APYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAM 70
Query: 75 IFVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ +S D D EA++ K + W V + + + + ++ +P ++L GK+L+
Sbjct: 71 LGISLDIDREAWETAIKKDTLSWDQV-CDFTGLSSETAKQYAILTLPTNILLSPTGKILA 129
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 190 ISVSDLEGKTIGLYFSMSSYK---------AS------AEFTPRLVEVYEKLKGKGESFE 234
S+ + +G+ + S ++ AS L + ++ K K ++F
Sbjct: 14 FSLPNEKGEKLSR--SAERFRNRYLLLNFWASWCDPQPEAN-AELKRLNKEYK-KNKNFA 69
Query: 235 IVLISLDDEEES---FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
++ ISLD + E+ + + W + + A+ + + TLPT +++ P GK L
Sbjct: 70 MLGISLDIDREAWETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKIL 128
Query: 292 HSNV 295
++
Sbjct: 129 ARDI 132
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-19
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 19 ARDF-LIRSNGDQVKL--DSLKGK-IGLYFSASWCGPC--QRFTPILAEVYNELSRQGDF 72
A F L + G+++ D+ K K + + F ASW ++ L E+Y + +
Sbjct: 11 APFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYI 70
Query: 73 EVIFVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
++ +S D D + +K + + W V ++ + + + IP ++L +GK+
Sbjct: 71 GMLGISLDVDKQQWKDAIKRDTLDWEQV-CDFGGLNSEVAKQYSIYKIPANILLSSDGKI 129
Query: 131 LS 132
L+
Sbjct: 130 LA 131
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 180 DF-VISSDGRKISVSD--LEGKTIGLYFSMSSYKAS--------AEFTPRLVEVYEKLKG 228
F + ++ G KI+ S + K++ + F AS L E+Y+K K
Sbjct: 13 FFSLPNAKGEKITRSSDAFKQKSLLINFW-----ASWNDSISQKQSN-SELREIYKKYKK 66
Query: 229 KGESFEIVLISLDDEEESFKR--DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGP 286
++ ISLD +++ +K ++ W + ++A+ + + +P +++
Sbjct: 67 NKY-IGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSS 125
Query: 287 DGKTLHSNV-AEAIEE 301
DGK L N+ E +++
Sbjct: 126 DGKILAKNLRGEELKK 141
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 3e-19
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A +F L +NG +++L LKGK + L F +WC PC++ P +A Y QG E++
Sbjct: 6 APNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEIVA 64
Query: 77 VSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
V+ E A + + + V +T ++ + + V +P +++ GKV+
Sbjct: 65 VNVGESKIAVHNFMKSYGVNFPVV----LDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-11
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 22/120 (18%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
+FV+ +G++I +SDL+GK + L F + EF P + Y+ K +G
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFW-----GTWCEPCKKEF-PYMANQYKHFKSQG-- 59
Query: 233 FEIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
EIV +++ + + +F + G + + + D R+ + +++S LPT +I P+GK
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYG-VNFPVVL--DTDRQ-VLDAYDVSPLPTTFLINPEGK 115
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 4e-19
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 19 ARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77
A DF + VKL G + L F ASWCGPC++ P + ++ + +G F+V+ V
Sbjct: 9 APDFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG-FQVVAV 67
Query: 78 SGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ D + ++ + + + + L+ V G+P ++D NGKV
Sbjct: 68 NLDAKTGDAMKFLAQVPAEFTVA----FDPKGQTPRLYGVKGMPTSFLIDRNGKV 118
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 32/158 (20%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 233
DF + + +SD G + L F AS F P + ++ K K KG F
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFW-----ASWCGPCRQSF-PWMNQMQAKYKAKG--F 62
Query: 234 EIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
++V ++LD + F + + D + R + + +PT +I +GK
Sbjct: 63 QVVAVNLDAKTGDAMKFLAQVP-AEFTVAF--DPKGQ-TPRLYGVKGMPTSFLIDRNGK- 117
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 328
+ VG P E +I A ++
Sbjct: 118 --------VLLQHVGFRPADKEAL--EQQILAALGGNE 145
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 4e-19
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 17 SSARDFLIRSNGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
A N + + G+ L F A++ + LA N+ +
Sbjct: 11 DLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK-IAMC 69
Query: 76 FVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+S DE + F + +L + + + ++++ G +++
Sbjct: 70 SISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIA 128
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 20/133 (15%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 233
+ K S + G+ L F A+ A +L K
Sbjct: 15 RIEFLGNDAKASFHNQLGRYTLLNFW-----AAYDAESRARN-VQLANEVNKFGPDK--I 66
Query: 234 EIVLISLDDEEESF----KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ IS+D++E F K D + K E L + ++L +I +G
Sbjct: 67 AMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE-LYKKYDLRKGFKNFLINDEGV 125
Query: 290 TLHSNV-AEAIEE 301
+ +NV E + E
Sbjct: 126 IIAANVTPEKLTE 138
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-19
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDE 84
+G QV L SL+GK + L F+ASWCG C++ P + + + DF +I + DE E
Sbjct: 22 DGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE 81
Query: 85 AFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIRE 141
+ V + D + GI V++D GK+ V++ R
Sbjct: 82 KVLAFAKSTG---VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKI-----VKLTRL 133
Query: 142 YGVEGYPFTVERIKEM-KEQEERA 164
Y E + V++I EM KE
Sbjct: 134 YNEEEFASLVQQINEMLKEGHHHH 157
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
DF I+ DG+++++S L GK + L F+ AS E P + +
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFT-----ASWCGVCRKEM-PFIEKDIWLKHKDNAD 68
Query: 233 FEIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARY-FELSTLPTLVIIGPDG 288
F ++ I D+ E +F + G + + D + A+Y + + V+I +G
Sbjct: 69 FALIGIDRDEPLEKVLAFAKSTG-VTYPLGL--DPGADIFAKYALRDAGITRNVLIDREG 125
Query: 289 KTLHSNVAEAIEEHGVGAFPFTPEKFAELAE-IQRAKEESQ 328
K I + + E+FA L + I +E
Sbjct: 126 K---------IVKLTRL---YNEEEFASLVQQINEMLKEGH 154
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 3e-18
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
DF L+ +G +L KGK + L F ASWC C P E+ E +
Sbjct: 2 VADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDY-VVLTV 60
Query: 77 VSGDEDDE----AFKGYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKV 130
VS E FK ++ + + +P D KL E + V P +D+ GK+
Sbjct: 61 VSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPS--GKLLETYGVRSYPTQAFIDKEGKL 117
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
DG+ +SD +GK + L F AS A P E+ ++ + ++S
Sbjct: 11 DGKTYRLSDYKGKKVYLKFW-----ASWCSICLASL-PDTDEIAKEAGDDY--VVLTVVS 62
Query: 240 LD----DEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGK 289
E FK + + LP D S + L + + + PT I +GK
Sbjct: 63 PGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGK-LLETYGVRSYPTQAFIDKEGK 116
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 4e-18
Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
F L +G+ + L+++ G + L+F A+WC C +L + + + VI
Sbjct: 17 EASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY---REISVIA 73
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
+ + +K + +T + + G P +++ ++G ++
Sbjct: 74 IDFWTAEALKALGLNKPGY-----PPPDTPEMFRKFIANYGDPSWIMVMDDGSLV----- 123
Query: 137 EIIREYGVEGYPFTV 151
++ V + V
Sbjct: 124 ---EKFNVRSIDYIV 135
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-08
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 34/146 (23%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F +++ DG IS++++ G + L+F A+ L + EK +
Sbjct: 19 SFSLTTIDGEVISLNNVGGDVVILWFM-----AAWCPSCVYMA-DLLDRLTEKYRE---- 68
Query: 233 FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-----------------KLARYFEL 275
++ I E L + + R+ L F +
Sbjct: 69 ISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNV 128
Query: 276 STLPTLVIIGPDGKTLHSNVAEAIEE 301
++ +VI+ L++ ++ E
Sbjct: 129 RSIDYIVIMDKSSNVLYAGTTPSLGE 154
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-18
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
+ F +G +SL GK L+F A WC CQ P++ +V + +
Sbjct: 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS---HPEVTFV 60
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKV 130
V+G + A + + +K P +D T + F V P +D +G V
Sbjct: 61 GVAGLDQVPAMQEFVNKYPVKTFTQLAD--TDGSVWANFGVTQQPAYAFVDPHGNV 114
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F + DG L GK L+F A E P + +V
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFW-----APWCPTCQGEA-PVVGQVAASHPEV--- 57
Query: 233 FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
V ++ D+ + + + P + + F ++ P + P G
Sbjct: 58 -TFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN 113
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 9e-18
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)
Query: 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
SL S +A F L +G V L+GK + F C C P + + N+ +
Sbjct: 2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN 61
Query: 71 DFEVIFVSGDEDD-EAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDE 126
F+V+ V+ D E+ + Y +PF D++ + + F P V++ +
Sbjct: 62 -FQVLAVAQPIDPIESVRQYVKDYG---LPFTVMYDAD--KAVGQAFGTQVYPTSVLIGK 115
Query: 127 NGKVLSDGGVEIIREYGVEGYPFTVERIKE-MKEQEERAKREQ 168
G++ + G + + I + +
Sbjct: 116 KGEI-------LKTYVGEPDFGKLYQEIDTAWRNSDAEGHHHH 151
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-09
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F + G+ +S +DL+GK + F +E P++++ K K
Sbjct: 10 AFSLPDLHGKTVSNADLQGKVTLINFW-----FPSCPGCVSEM-PKIIKTANDYKNKN-- 61
Query: 233 FEIVLISLDDEEES----FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288
F+++ ++ + + +D G +P+ + DK + + F PT V+IG G
Sbjct: 62 FQVLAVAQPIDPIESVRQYVKDYG-LPFTVMYDADK---AVGQAFGTQVYPTSVLIGKKG 117
Query: 289 KTLHSNV 295
+ L + V
Sbjct: 118 EILKTYV 124
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-17
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
F +G SL+GK L+F WC C P L++V +
Sbjct: 4 RLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVG 60
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKV 130
++ D A + + SK + F +D + + V P V +G
Sbjct: 61 IATRADVGAMQSFVSKYN---LNFTNLND--ADGVIWARYNVPWQPAFVFYRADGTS 112
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 23/113 (20%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
G + L+GK L+F AE P L +V V I+
Sbjct: 13 SGAPFDGASLQGKPAVLWFW-----TPWCPFCNAEA-PSLSQVAAANPA----VTFVGIA 62
Query: 240 LDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ SF + + L D + + + P V DG
Sbjct: 63 TRADVGAMQSFVSKYN-LNFTNLN--DADGV-IWARYNVPWQPAFVFYRADGT 111
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-16
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 27 NGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G SLKGK + F A+WC PC+ P + +V + +G F + ++ +E
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG-FTFVGIAVNEQLPN 81
Query: 86 FKGYFSK--MPWLAVPFSDSETRD-KLDELFKVMGIPHLVILDENGKV 130
K Y + + + + R + GIP ++D +G V
Sbjct: 82 VKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNV 129
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
DG+ S + L+GK + F A+ +E P +V+V + +G F V I+
Sbjct: 23 DGKPFSSASLKGKAYIVNFF-----ATWCPPCRSEI-PDMVQVQKTWASRG--FTFVGIA 74
Query: 240 LDDEEE---SFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
++++ ++ + G P + + ++ +PT +I G V
Sbjct: 75 VNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIV 134
Query: 296 AEAIEE 301
+
Sbjct: 135 GPRSKA 140
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A +F L +G+ L +GK + + F ASWC C+ P + + + V+
Sbjct: 21 APNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD-LVVLA 79
Query: 77 VSGDEDDEAF-KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
V+ ++ + +L SD+ ++ + + +P I+D G +
Sbjct: 80 VNVEKRFPEKYRRAPVSFNFL----SDATG--QVQQRYGANRLPDTFIVDRKGII 128
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-11
Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 30/146 (20%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
+F + + G S++ GK + + F AS E P + + +
Sbjct: 23 NFKLPTLSGENKSLAQYRGKIVLVNFW-----ASWCPYCRDEM-PSMDRLVKSFPKGD-- 74
Query: 233 FEIVLISLDDEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
++ ++++ R ++ D + + + + + + LP I+ G
Sbjct: 75 LVVLAVNVEKRFPEKYRRAP----VSFNFLSDATGQ-VQQRYGANRLPDTFIVDRKGI-- 127
Query: 292 HSNVAEAIEEHGVGAFPFTPEKFAEL 317
I + G + K
Sbjct: 128 -------IRQRVTGGIEWDAPKVVSY 146
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 4e-16
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
D ++G KL +GK L A+WC PC++ P L E+ +LS FEV+
Sbjct: 40 LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN-FEVVA 98
Query: 77 VSGDEDD-EAFKGYFSK--MPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKV 130
++ D D E K + + + L ++ L + + +G+P V++D G
Sbjct: 99 INIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCE 156
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 30/144 (20%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
DG+ +SD GKT+ + A+ E P L E+ KL G FE+V I+
Sbjct: 49 DGKPKKLSDFRGKTLLVNLW-----ATWCVPCRKEM-PALDELQGKLSGPN--FEVVAIN 100
Query: 240 LDDEE----ESFKRDLGSMPWLALPF--KDKSREKLARYFELSTLPTLVIIGPDGKTLHS 293
+D + ++F ++ + L K K + L +PT V++ P G
Sbjct: 101 IDTRDPEKPKTFLKEAN-LTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC---- 155
Query: 294 NVAEAIEEHGVGAFPFTPEKFAEL 317
G + E +L
Sbjct: 156 -----EIATIAGPAEWASEDALKL 174
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
DF L NG+ VKL LKG+ + + F A+WC PC+ P + + ++ + F ++ VS
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP-FRMLCVS 68
Query: 79 GDEDD-EAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVL 131
DE A + +F K D++ ++ +L+ G+P ++D +G +L
Sbjct: 69 IDEGGKVAVEEFFRKTG---FTLPVLLDADK--RVGKLYGTTGVPETFVIDRHGVIL 120
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 36/164 (21%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
DF +++ +G + +SDL+G+ + + F A+ E P ++ + + GK
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFW-----ATWCPPCREEI-PSMMRLNAAMAGKP-- 61
Query: 233 FEIVLISLDDEEE----SFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPD 287
F ++ +S+D+ + F R G LP D + + + + + +P +I
Sbjct: 62 FRMLCVSIDEGGKVAVEEFFRKTG----FTLPVLLDADKR-VGKLYGTTGVPETFVIDRH 116
Query: 288 GKTLHSNVAEAIEEHGVGAFPFTPEKFAEL--AEIQRAKEESQT 329
G I + VGA + + E+ +A+E
Sbjct: 117 GV---------ILKKVVGAMEWDHPEVIAFLNNELSKAREGHHH 151
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFE 73
+S SA + + L SLK + A+WCGPC++ P +++ Y + +
Sbjct: 1 MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS-VD 59
Query: 74 VIFVSGDEDDEAFKGYFSKMP--WLAVPFSDSETRDKLDEL-FKVMGIPHLVILDENGKV 130
++ ++ D D + + P + ++ + +R+ + V +P V+
Sbjct: 60 MVGIALDTSDNI-GNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGY 118
Query: 131 L 131
Sbjct: 119 R 119
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 9e-12
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 30/158 (18%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 233
+ D S+ L+ + A+ E P + + Y+ K
Sbjct: 7 ELAGWKDNTPQSLQSLKAPVRIVNLW-----ATWCGPCRKEM-PAMSKWYKAQKKGS--V 58
Query: 234 EIVLISLDDEE--ESFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
++V I+LD + +F + S P + + LP V+ P
Sbjct: 59 DMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG- 117
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 328
+ G + + ++ A + +
Sbjct: 118 --------YRQTITG--EVNEKSLTDA--VKLAHSKCR 143
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 9e-15
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 22/127 (17%)
Query: 27 NGDQVKLDSLKGKIG-LYFSASWCGPCQRFT-PILAEVYNELSRQGDFEVIFVSGDEDDE 84
N + + + L+GK+ + C C P +++ + +VI + +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ-VQVIGLHSVFEHH 77
Query: 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGV 144
D T + L GI V +D + +++Y +
Sbjct: 78 -----------------DVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPST--MKKYRL 118
Query: 145 EGYPFTV 151
EG P +
Sbjct: 119 EGTPSII 125
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 8e-07
Identities = 16/143 (11%), Positives = 46/143 (32%), Gaps = 28/143 (19%)
Query: 186 DGRKISVSDLEGKTIGLYF-SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244
+ +S DL GK + + M P+ +++ + +++ + E
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEH 76
Query: 245 ---------ESFKRDLGSMPW---LALPFKDKSREKLARYFELSTLPTLVIIGPDGK--- 289
+ F + G + + + +P + + + + L P++++ G+
Sbjct: 77 HDVMTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQ 135
Query: 290 ---------TLHSNVAEAIEEHG 303
L + + E
Sbjct: 136 VQFGQVDDFVLGLLLGSLLSETD 158
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79
DF L+ G V ++ + F ASWC C+ P L V E F VI
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEE--TGVPFYVISREP 70
Query: 80 DEDDEAFKGYFSKM----PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ E Y P LA D + FKV+G P ++D GKV+
Sbjct: 71 RDTREVVLEYMKTYPRFIPLLASDR-DRPHE--VAARFKVLGQPWTFVVDREGKVV 123
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 36/160 (22%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
DF++ G+ ++ + + + +++ AS AEF P L V E+ G
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFW------ASWCTVCKAEF-PGLHRVAEE---TGVP 62
Query: 233 FEIVLISLDDEEE---SFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288
F ++ D E + + +P LA +A F++ P ++ +G
Sbjct: 63 FYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHE--VAARFKVLGQPWTFVVDREG 120
Query: 289 KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 328
K + G E + + A + +
Sbjct: 121 K---------VVALFAG--RAGREALLD--ALLLAGADLE 147
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 23/145 (15%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD-- 83
NG+ + + K ++F + C C+ P + E ++ Q V+ V +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKY--QDQLNVVAVHMPRSEDD 75
Query: 84 ---EAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137
K ++ + DS+ L + F+ +P + D+ G++
Sbjct: 76 LDPGKIKETAAEHD---ITQPIFVDSD--HALTDAFENEYVPAYYVFDKTGQLRH----- 125
Query: 138 IIREYGVEGYPFTVERIKEMKEQEE 162
+ G G +R+ + + E
Sbjct: 126 --FQAGGSGMKMLEKRVNRVLAETE 148
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 53/150 (35%)
Query: 186 DGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
+G + K ++F +M P++ E +K + + +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAM----------PQVNEFRDKYQDQ---LNV 64
Query: 236 VLISLDDEE--------ESFKRDLGSMPWLALPFK---DKSREKLARYFELSTLPTLVII 284
V + + E + + + D L FE +P +
Sbjct: 65 VAVHMPRSEDDLDPGKIKETAAEHD------ITQPIFVDSDHA-LTDAFENEYVPAYYVF 117
Query: 285 GPDGK------------TLHSNVAEAIEEH 302
G+ L V + E
Sbjct: 118 DKTGQLRHFQAGGSGMKMLEKRVNRVLAET 147
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 7e-14
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 23/126 (18%)
Query: 28 GDQVKLDSLKGK-IGLYFSASWCGPC-QRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+ L L+GK I + C C P+ +V V+ + +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK-VAVLGLHTVFEHH- 75
Query: 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVE 145
++ T L I V +D+ G + Y +
Sbjct: 76 ----------------EAMTPISLKAFLHEYRIKFPVGVDQPGDG---AMPRTMAAYQMR 116
Query: 146 GYPFTV 151
G P +
Sbjct: 117 GTPSLL 122
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-09
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 28/150 (18%)
Query: 180 DFVISS---DGRKISVSDLEGKTIGLYF-SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
+ I ++++DL GK I + M P +V +
Sbjct: 8 ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAV 65
Query: 236 VLISLDDEE---------ESFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIG 285
+ + E ++F + P D + + +++ P+L++I
Sbjct: 66 LGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID 125
Query: 286 PDGK------------TLHSNVAEAIEEHG 303
G L + +A + E
Sbjct: 126 KAGDLRAHHFGDVSELLLGAEIATLLGEAA 155
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 9e-14
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
F + G+ + + KG+ L+F SWC PC++ P Y+ +++
Sbjct: 15 PAVFLMKTIEGEDISI-PNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS-VKLVT 72
Query: 77 VS---GDEDDEAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKV 130
V+ +++ + + + + F DS+ +L + + ++ IP +L+E G++
Sbjct: 73 VNLVNSEQNQQVVEDFIKANK---LTFPIVLDSK--GELMKEYHIITIPTSFLLNEKGEI 127
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 42/149 (28%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
+G IS+ + +G+ L+F S E P+ Y+ ++V ++
Sbjct: 24 EGEDISIPN-KGQKTILHFW-----TSWCPPCKKEL-PQFQSFYDAHPSDS--VKLVTVN 74
Query: 240 LDDEEES------FKRDLGSMPWLALPFK---DKSREKLARYFELSTLPTLVIIGPDGKT 290
L + E++ F + L F D E L + + + T+PT ++ G+
Sbjct: 75 LVNSEQNQQVVEDFIKANK------LTFPIVLDSKGE-LMKEYHIITIPTSFLLNEKGE- 126
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAELAE 319
IE+ +G P T E+ E E
Sbjct: 127 --------IEKTKIG--PMTAEQLKEWTE 145
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 18/155 (11%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
+ ++ + K K + F ASWC C + + +I
Sbjct: 18 HTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS-ANLIT 76
Query: 77 V-----SGDEDDEAFKGYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKV 130
V ++ D F+ +++ + + +P +D+ + + + P ++ ++G V
Sbjct: 77 VASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGG--TIAQNLNISVYPSWALIGKDGDV 134
Query: 131 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAK 165
G + I+ K
Sbjct: 135 QR-------IVKGSINEAQALALIRNPNADLGSLK 162
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 29/120 (24%)
Query: 186 DGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
D R SV + K + F + + + + K +
Sbjct: 27 DNRPASVYLKKDKPTLIKFWASWCPLCLSEL----------GQAEKWAQDAKFSS--ANL 74
Query: 236 VLISLD-----DEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ ++ ++ F++ + + LP D +A+ +S P+ +IG DG
Sbjct: 75 ITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGT-IAQNLNISVYPSWALIGKDGD 133
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 1e-13
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 27 NGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---- 81
+ L SL+GK+ L F A C CQR P + Y G VI V E
Sbjct: 71 GNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG-LAVIGVHTPEYAFE 129
Query: 82 -DDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ + + D+ ++ P ++D G V
Sbjct: 130 KVPGNVAKGAANLGISYPIA--LDNN--YATWTNYRNRYWPAEYLIDATGTVR 178
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 9e-08
Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 46/153 (30%)
Query: 184 SSDGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESF 233
+ + I + L GK + + F ++ P +V Y+ K G
Sbjct: 69 TPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAI----------PHVVGWYQAYKDSG--L 116
Query: 234 EIVLISLDDEE--------ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIG 285
++ + + +LG + + P + + P +I
Sbjct: 117 AVIGVHTPEYAFEKVPGNVAKGAANLG-ISY---PIALDNNYATWTNYRNRYWPAEYLID 172
Query: 286 PDGK------------TLHSNVAEAIEEHGVGA 306
G + V + + + G
Sbjct: 173 ATGTVRHIKFGEGDYNVTETLVRQLLNDAKPGV 205
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 4e-13
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 33/135 (24%)
Query: 23 LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQG-----DFEVIF 76
+ G Q+ L + ++ + WC PC+ + L ++ EL G V+
Sbjct: 44 SLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
++ + RD + G+ + I D + G
Sbjct: 104 INVRDYS----------------------RDIAQDFVTDNGLDYPSIYDPPFMTAASLGG 141
Query: 137 EIIREYGVEGYPFTV 151
P T+
Sbjct: 142 -----VPASVIPTTI 151
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-08
Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES---- 232
+ +G +I++SD E + + L +E L ++E+L+ G
Sbjct: 45 LMEEGTQINLSDFENQVVILNAW-----GQWCAPCRSES-DDLQIIHEELQAAGNGDTPG 98
Query: 233 FEIVLISLDDEEES----FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288
++ I++ D F D G + + ++ S +PT +++
Sbjct: 99 GTVLGINVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQH 157
Query: 289 K 289
+
Sbjct: 158 R 158
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 4e-11
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 35/131 (26%)
Query: 1 MNMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILA 60
M++ G + QS+ + + G + F C C L+
Sbjct: 1 MSLEGIKQINFQSI--NVVENLEEAKEGIPTIIM---------FKTDTCPYCVEMQKELS 49
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
V E +G F + + +E+ L + +P
Sbjct: 50 YVSKER--EGKFNIYYARLEEEKNI----------------------DLAYKYDANIVPT 85
Query: 121 LVILDENGKVL 131
V LD+ G
Sbjct: 86 TVFLDKEGNKF 96
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-08
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 27/135 (20%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
+ SWCG C+ P AE +F ++ + +E+ +
Sbjct: 51 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK----------------- 93
Query: 102 DSETRDKLDELFKVMG--IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159
DE F G IP ++ LD +GKV + E Y + ++ MKE
Sbjct: 94 --------DEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKE 145
Query: 160 QEERAKREQSLRSVL 174
+ER + + L
Sbjct: 146 AQERLTGDAFRKKHL 160
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-08
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 24/93 (25%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L F A+WC C+ L + + + +
Sbjct: 34 LVFGANWCTDCRALDKSL---------------------RNQKNTALIAKHFEVVKIDVG 72
Query: 102 DSETRDKLDELFKVM---GIPHLVILDENGKVL 131
+ + +L + + GIP +V+++ +GKV
Sbjct: 73 NFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR 105
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 26/96 (27%)
Query: 42 LYFSASWCGPCQRFTPI---LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 98
L A WC C+ F +V L+ + + + +
Sbjct: 36 LDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANVTAN-------------- 76
Query: 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
D++ L V+G+P ++ D G+
Sbjct: 77 ---DAQDVALLKH-LNVLGLPTILFFDGQGQEHPQA 108
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-08
Identities = 52/322 (16%), Positives = 93/322 (28%), Gaps = 101/322 (31%)
Query: 57 PILA-EVYNELSRQGD--------FEVIFVSGDEDDEAF------KGYFSKMPWLAVPFS 101
IL+ E + + D F + +E + F Y +L P
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY----KFLMSPIK 99
Query: 102 D------------SETRDKL---DELFKVMGIP----------HLVILDENGKVLSDG-- 134
E RD+L +++F + L+ L VL DG
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 135 --G-----VEIIREYGVE-GYPFTVE--RIKEMKEQEERAKREQSLRSVLTSHSRDFVIS 184
G +++ Y V+ F + +K E + Q L + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 185 SDGRKISVSDLEGKTIGLYFSMSSYKAS-------------AEF--------TPRLVEVY 223
S K+ + ++ + + Y+ F T R +V
Sbjct: 220 SSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 224 EKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST--LPTL 281
+ L + ISLD + D+ + L +Y + LP
Sbjct: 279 DFLSAATTTH----ISLDHHSMTLT-------------PDEVKSLLLKYLDCRPQDLPRE 321
Query: 282 VI-IGPDGKTLHSNVAEAIEEH 302
V+ P S +AE+I +
Sbjct: 322 VLTTNP---RRLSIIAESIRDG 340
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 36/135 (26%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L WC CQ L Q + E+ +S ++ + +
Sbjct: 59 LVAGEMWCPDCQINLAALDFAQRL---QPNIELAIISKGRAEDDLRQRLA---------- 105
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLS----------DGGVEIIREYGVEGYPFTV 151
+ + IP +++LDE +L DGG + + Y Y
Sbjct: 106 -----------LERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGDY--LE 152
Query: 152 ERIKEMKEQEERAKR 166
I ++ E A R
Sbjct: 153 HAIGDVLAIIEGAAR 167
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-08
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 35/118 (29%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L+ CG C + V + E I + + E +A ++
Sbjct: 23 LFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQE-----------IAGRYA 68
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159
V P +++ NGK EI+RE I+ +E
Sbjct: 69 -------------VFTGPTVLLF-YNGK-------EILRESRFISLENLERTIQLFEE 105
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 20/95 (21%)
Query: 36 LKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95
L+G L + C C R P L + E+ + +
Sbjct: 30 LQGDAILAVYSKTCPHCHRDWPQLIQASKEV-----------DVPIVMFIWGSLIGER-- 76
Query: 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ V G P LV + G++
Sbjct: 77 ------ELSAARLEMNKAGVEGTPTLVFY-KEGRI 104
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-06
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 25/96 (26%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 97
+ + +WCGPC+R + ++ + + L D + F KM
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFK--DSL-----------VADYFNRHFVNL--KM---- 68
Query: 98 VPFSDSETRD--KLDELFKVMGIPHLVILDENGKVL 131
D E + +L + + V P L+ ++ +G+V+
Sbjct: 69 ----DMEKGEGVELRKKYGVHAYPTLLFINSSGEVV 100
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
LYF SW PC+ + + NE S V F+S D D+
Sbjct: 26 LYFHTSWAEPCKALKQVFEAISNEPSNS---NVSFLSIDADE 64
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 39 KIGLYFSAS-WCGPCQRF------TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91
IGL+F+ S WC C + + ++ V + + +
Sbjct: 49 PIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-----HLHMVEVDFPQKNHQPEEQRQ 103
Query: 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGG 135
K L +KV G P LV +D GK L+ G
Sbjct: 104 KNQELK-------------AQYKVTGFPELVFIDAEGKQLARMG 134
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 28/88 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F + C C+ +L + +V S D + P L
Sbjct: 26 FHKNLCPHCKNMEKVLDKFGARAP-----QVAISSVDSEAR---------PELM------ 65
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVL 131
+ +P LV + +GKV
Sbjct: 66 -------KELGFERVPTLVFI-RDGKVA 85
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-06
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 27/96 (28%)
Query: 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--EDDEAFKGYFSKMP 94
K + C C++F L+ V E + F++ + + + S+
Sbjct: 29 KETATFFIGRKTCPYCRKFAGTLSGVVAET----KAHIYFINSEEPSQLNDLQAFRSR-- 82
Query: 95 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ + +P V + +G++
Sbjct: 83 ------------------YGIPTVPGFVHI-TDGQI 99
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 18/84 (21%)
Query: 12 QSLLSSSARDFLIRSNGDQVK-----------LDSLKGK-IGLYFSASWCGPCQRFTPIL 59
SS R+ L S + I + F A WC PC +
Sbjct: 3 HHHHHSSGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYF 62
Query: 60 AEVYNELSRQGDFEVIFVSGDEDD 83
N + V V D D
Sbjct: 63 KNQLNY------YYVTLVDIDVDI 80
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 26/88 (29%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
++AE+ E Q D++V ++ +
Sbjct: 43 SDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEA------------------- 82
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVL 131
+ + F V P ++ +GK+
Sbjct: 83 -----IGDRFNVRRFPATLVF-TDGKLR 104
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCGPC+ P + + E+ EV F D D
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIP-----EVEFAKVDVDQ 60
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ +P L ELS Q V+ + D D+
Sbjct: 27 FFATWCGPCKMISPKLV----ELSTQFADNVVVLKVDVDE 62
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ F+ CGPC R P + + N+ + +F+ D
Sbjct: 26 VKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQ 62
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-05
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F++ C C ++ EV NE+ EV +++ E +
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVME--------------------NP 46
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
+ + + +M +P +VI + + +
Sbjct: 47 QKAME----YGIMAVPTIVI-NGDVEF 68
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDD 61
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+A+WCGPC+ P+ LS +VIF+ D D
Sbjct: 31 FTATWCGPCKMIAPLFE----TLSNDYAGKVIFLKVDVDA 66
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 31/88 (35%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE-AFKGYFSKMPWLAVPFSD 102
F++ C C ++ E E +V + D E A +
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIE--------------- 50
Query: 103 SETRDKLDELFKVMGIPHLVILDENGKV 130
+ +M +P + I NG V
Sbjct: 51 ----------YGLMAVPAIAI---NGVV 65
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 3 MNGANSHD----IQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPI 58
M G++ H ++ + S +A + + GD++ + + FSA+WCGP + P
Sbjct: 1 MRGSHHHHHHGSVKQIESKTAFQEALDAAGDKLVV--------VDFSATWCGPSKMIKPF 52
Query: 59 LAEVYNELSRQGDFEVIFVSGDEDD 83
+ + S VIF+ D DD
Sbjct: 53 FHSLSEKYS-----NVIFLEVDVDD 72
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
WCGP + P ++ E +VIF+ D + E
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYL-----DVIFLKLDCNQE 66
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
WCGPC+ P ++ E +VIF+ D + E
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE 79
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGL-YFSASWC-GPCQRFTPILAEVYNELSRQG-DFEVIF 76
D L+ S G++ +L +LKGK + + C C T L +V +L G DF VI
Sbjct: 10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVIT 69
Query: 77 VSGDEDD--EAFKGYFSKM-----PWLAVPFSDSETRDKLDELFKVM------GIPH--- 120
+ D D E K + + W V SE KL + H
Sbjct: 70 FTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNV 129
Query: 121 LVILDENGKV 130
+V+L ++
Sbjct: 130 VVVLSPELQI 139
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P+ E+ + ++ IFV D D
Sbjct: 40 FFATWCGPCKTIAPLFKELSEK------YDAIFVKVDVDK 73
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCGPC+R P E ++ ++F+ D D+
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDE 67
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWCGPC+ P+ A++ + +F+ D D+
Sbjct: 41 FTASWCGPCRIMAPVFADLAKKFP-----NAVFLKVDVDE 75
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC+ F PI AE E + + V FV + + E P L+ F
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAERAGK----VRFVKVNTEAE---------PALSTRFR-- 106
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ IP +++ NGK++
Sbjct: 107 -----------IRSIPTIMLY-RNGKMID 123
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 27/89 (30%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC++ P L+ Q V D P +A
Sbjct: 71 FWAPWCGPCRQMAPQFQAAAATLAGQ----VRLAKIDTQAH---------PAVAGRHR-- 115
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ GIP ++ G+ L+
Sbjct: 116 -----------IQGIPAFILF-HKGRELA 132
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWCGPC+ P A++ +L V+F+ D D+
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDE 79
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEV 62
M + + + D + + D KL + + F+ASWCGPC+ P+ AE
Sbjct: 1 MAAEEG-AVIACHTKQEFDTHMANGKDTGKL------VIIDFTASWCGPCRVIAPVFAEY 53
Query: 63 YNELSRQGDFEVIFVSGDEDD 83
+ IF+ D D+
Sbjct: 54 AKKFP-----GAIFLKVDVDE 69
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P++ + + + F D D+
Sbjct: 31 FYATWCGPCKMIAPMIEKFSEQYPQ-----ADFYKLDVDE 65
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-05
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC+ +PIL E+ + G +V+ V+ DE P LA +
Sbjct: 57 FFAPWCGPCRLVSPILEELARDH--AGRLKVVKVNVDEH-----------PGLAARYG-- 101
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
V +P LV+ G
Sbjct: 102 -----------VRSVPTLVLF-RRGAP 116
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-05
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 1 MNMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILA 60
+ + G N H I + D + K+ + FSA WCGP ++ P
Sbjct: 19 IELAGGNVHLITTK---ERWDQKLSEASRDGKI------VLANFSARWCGPSRQIAPYYI 69
Query: 61 EVYNELSRQGDFEVIFVSGDEDD 83
E+ ++F+ D D+
Sbjct: 70 ELSENYP-----SLMFLVIDVDE 87
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-05
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ F+ASWCGPC+ P+ AE + +F+ D D+
Sbjct: 41 IDFTASWCGPCRFIAPVFAEYAKKFP-----GAVFLKVDVDE 77
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
FS C CQ+ TP+L E+ + F +V +E+ L FS
Sbjct: 29 FSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVEEE-----------KTLFQRFS-- 73
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
+ G+P ++ ++G+
Sbjct: 74 -----------LKGVPQILYF-KDGEY 88
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 9e-05
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPCQR IL + +V F+ D D
Sbjct: 30 FFATWCGPCQRLGQILPSIAEANK-----DVTFIKVDVDK 64
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P L ++ +V FV D D+
Sbjct: 37 FYATWCGPCKMMQPHLTKLIQAYP-----DVRFVKCDVDE 71
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWC PC+ PI AE+ + V F+ D D+
Sbjct: 33 FTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE 67
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+A WCGPC+ + ++ E V F D D+
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADN 78
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 25/145 (17%)
Query: 18 SARDFLIRSNGDQVKLDSLK---------GK-IGLYFSASWCGPCQRF------TPILAE 61
+DF + +N K D K + L F+ C C++ P ++
Sbjct: 18 KTQDFNLYTNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSS 77
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKG--YFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119
+ N D+ +I + D + + + F P
Sbjct: 78 IINN-----DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQP 132
Query: 120 HLVILDENGKVLSD--GGVEIIREY 142
V++D G L+ E I +Y
Sbjct: 133 FYVLIDNEGNPLNKSYAYDEDISKY 157
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P+ ++ + + +V F D D+
Sbjct: 40 FWATWCGPCKMIGPVFEKISDTPAGD---KVGFYKVDVDE 76
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 2e-04
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99
L F C C R+ +A Y V + D G P P
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRL--QMRDPLPPGLELARPVTFTP 78
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
++F A W C + ++AE+ EL + V FV + +
Sbjct: 37 VHFWAPWAPQCAQMNEVMAELAKELPQ-----VSFVKLEAEG 73
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 27/128 (21%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF- 100
+YF + C CQ+ V + D ++
Sbjct: 24 VYFHSEHCPYCQQMN---TFVLS------------------DPGVSRLLEAR-FVVASVS 61
Query: 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160
D+ +L ++V G P V L E+ R +G ++ ++++ +
Sbjct: 62 VDTPEGQELARRYRVPGTPTFVFLVPKAGAWE----EVGRLFGSRPRAEFLKELRQVCVK 117
Query: 161 EERAKREQ 168
Sbjct: 118 GGACGEGH 125
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 44 FSASWCGPCQRFTPILAEVYNELS 67
F A+W CQ F PI A++ + +
Sbjct: 33 FFANWSNDCQSFAPIYADLSLKYN 56
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Length = 176 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 33/146 (22%)
Query: 2 NMNGANSHDIQS-LLSSSARDF---LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFT 56
+ + ++ S L+ F ++ ++ LKGK L +WC C+
Sbjct: 18 GSHMLDPSELPSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEH 77
Query: 57 PILAEVYNELSRQGDFEVIFVSG----DEDDEAFKGYFSKMPWLAV---PFS----DSET 105
P L L+ QG + + G D++ A K WL P+ D++
Sbjct: 78 PEL----TRLAEQG----VVIYGINYKDDNAAAIK-------WLNELHNPYLLSISDADG 122
Query: 106 RDKLDELFKVMGIPHLVILDENGKVL 131
LD V G P ++D+ G +
Sbjct: 123 TLGLD--LGVYGAPETYLIDKQGIIR 146
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 6e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 28/87 (32%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WC PC PI+ E+ + + V F + D+ P +A +
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQ-----VGFGKLNSDEN---------PDIAARYG-- 66
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
VM +P ++ ++G+
Sbjct: 67 -----------VMSLPTVIFF-KDGEP 81
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.95 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.93 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.93 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.92 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.92 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.92 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.91 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.91 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.91 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.91 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.91 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.91 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.9 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.9 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.9 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.9 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.9 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.9 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.9 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.9 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.89 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.89 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.89 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.89 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.89 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.89 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.89 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.89 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.89 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.89 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.88 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.88 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.88 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.88 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.88 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.88 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.88 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.88 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.88 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.88 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.88 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.87 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.87 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.87 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.87 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.87 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.87 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.87 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.87 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.87 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.87 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.87 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.87 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.87 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.87 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.87 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.87 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.86 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.86 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.86 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.86 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.86 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.86 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.86 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.86 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.86 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.86 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.86 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.86 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.86 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.86 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.86 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.86 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.86 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.86 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.86 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.86 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.77 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.86 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.86 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.86 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.86 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.86 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.85 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.85 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.85 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.85 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.85 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.85 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.85 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.85 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.85 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.85 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.85 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.85 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.85 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.85 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.85 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.75 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.85 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.84 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.84 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.84 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.84 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.84 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.84 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.84 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.83 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.83 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.83 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.83 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.83 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.83 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.83 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.83 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.83 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.82 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.82 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.82 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.82 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.82 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.82 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.82 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.82 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.82 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.82 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.81 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.81 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.81 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.81 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.81 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.81 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.8 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.8 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.8 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.8 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.8 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.8 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.8 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.8 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.79 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.79 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.79 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.79 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.79 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.79 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.79 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.79 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.79 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.79 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.79 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.79 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.79 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.78 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.78 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.78 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.78 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.78 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.78 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.78 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.78 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.78 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.78 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.78 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.77 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.77 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.77 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.77 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.77 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.77 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.77 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.77 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.77 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.77 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.77 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.77 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.76 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.76 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.76 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.76 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.76 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.62 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.76 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.76 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.76 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.76 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.76 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.75 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.61 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.75 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.75 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.75 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.75 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.74 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.74 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.74 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.74 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.73 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.73 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.72 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.72 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.71 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.69 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.68 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.68 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.66 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.66 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.66 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.66 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.66 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.65 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.65 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.65 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.65 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.64 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.63 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.62 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.59 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.57 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.57 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.57 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.56 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.56 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.56 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.56 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.55 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.55 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.55 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.55 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.54 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.54 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.54 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.53 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.53 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.53 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.52 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.52 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.52 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.52 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.52 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.52 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.52 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.51 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.51 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.51 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.51 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.51 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.51 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.51 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.5 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.5 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.5 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.5 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.5 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.49 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.49 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.49 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.49 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.49 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.48 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.22 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.48 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.48 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.48 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.47 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.47 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.47 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.47 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.47 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.47 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.46 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.46 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.45 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.45 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.45 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.45 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.45 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.45 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.45 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.44 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.44 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.44 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.44 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.44 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.43 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.43 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.43 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.43 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.42 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.42 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.42 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.42 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.42 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.42 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.41 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.41 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.41 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.41 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.41 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.4 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.4 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.4 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.39 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.39 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.39 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.39 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.39 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.39 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.39 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.39 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.38 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.38 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.38 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.38 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.38 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.37 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.36 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.36 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.36 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.36 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.35 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.35 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.35 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.34 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.34 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.34 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.34 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.33 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.33 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.33 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.33 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.33 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.33 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.33 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.33 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.33 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.33 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.32 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.32 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.32 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.32 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.32 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.32 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.31 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.31 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.31 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.31 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.31 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.31 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.3 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.3 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.29 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.29 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.29 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.29 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.29 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.29 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.29 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.29 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.28 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.28 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.28 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.27 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.27 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.27 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.27 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.27 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.26 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.26 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.26 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.26 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.26 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.26 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.26 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.26 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.26 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.26 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.25 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.25 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.9 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.25 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.24 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.24 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.24 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.88 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.23 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.23 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.22 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.22 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.22 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.22 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.21 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.21 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.21 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.21 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.2 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.2 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.2 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.2 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.18 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.17 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.15 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.15 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 99.15 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.15 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.15 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.13 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.13 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.12 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.12 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.11 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.11 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.11 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.11 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.1 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.1 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.09 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.08 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.06 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.03 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.02 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.02 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.57 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.98 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.98 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.96 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.96 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.95 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.94 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.94 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.81 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.8 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.79 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.79 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.78 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.77 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.74 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.73 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.7 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.69 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.66 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.66 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.66 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.64 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.62 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.61 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.58 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.56 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.56 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.56 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.56 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.54 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.54 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.51 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.49 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.46 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.44 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.44 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.37 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.36 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.35 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.34 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.33 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.31 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.29 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.27 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.27 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.22 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 98.21 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.19 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.16 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.15 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.11 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.06 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.0 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.0 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.92 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.9 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.89 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.87 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 97.87 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.85 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.82 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.8 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.79 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.76 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.73 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.73 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.68 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 97.68 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.67 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.65 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.61 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.56 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 97.53 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 97.52 |
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=202.02 Aligned_cols=201 Identities=19% Similarity=0.291 Sum_probs=147.6
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
.++++.++....+|+ ++|+||++||++|+.+.|.|.++++++++++ ++.++.|+++...
T Consensus 19 ~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------- 79 (241)
T 3idv_A 19 VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS------------------- 79 (241)
T ss_dssp EECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH-------------------
T ss_pred EecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH-------------------
Confidence 456666665556788 9999999999999999999999999998653 4888889887664
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCce
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~ 182 (350)
.+++.|++.++|+++++ ++|+.+... | ..+.+.+..++.... . ......+...
T Consensus 80 -----~l~~~~~v~~~Pt~~~~-~~g~~~~~~--------g----~~~~~~l~~~i~~~~---~------~~~~~~~~~~ 132 (241)
T 3idv_A 80 -----VLASRFDVSGYPTIKIL-KKGQAVDYE--------G----SRTQEEIVAKVREVS---Q------PDWTPPPEVT 132 (241)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEECC--------S----CSCHHHHHHHHHHHH---S------TTCCCCCCSS
T ss_pred -----HHHHhcCCCcCCEEEEE-cCCCccccc--------C----cccHHHHHHHHhhcc---C------cccccccccc
Confidence 68999999999999999 467665421 1 234455544443321 0 0011122233
Q ss_pred ecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCC
Q 018808 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFK 262 (350)
Q Consensus 183 ~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 262 (350)
...++..+......+++++|+||++||++|+.+.|.+.++++++.+++.++.++.|+++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~------------------- 193 (241)
T 3idv_A 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAE------------------- 193 (241)
T ss_dssp EECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTC-------------------
T ss_pred eeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCC-------------------
Confidence 3344444433223568999999999999999999999999999987655588998888754
Q ss_pred chhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 263 DKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 263 ~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|+|.++|+++++ ++|+.+. +.|
T Consensus 194 ----~~l~~~~~v~~~Pt~~~~-~~g~~~~-~~g 221 (241)
T 3idv_A 194 ----TDLAKRFDVSGYPTLKIF-RKGRPYD-YNG 221 (241)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-ETTEEEE-CCS
T ss_pred ----HHHHHHcCCcccCEEEEE-ECCeEEE-ecC
Confidence 458999999999999999 5688776 444
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=176.66 Aligned_cols=136 Identities=35% Similarity=0.594 Sum_probs=121.5
Q ss_pred cccccCC-c-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhc-CCCcEEEEEEeCCCCHHHHHHh
Q 018808 174 LTSHSRD-F-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 174 ~~~~~p~-f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
++..+|+ | +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++ .+ +++++|++|.+.+.++++
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~ 80 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISWDESAEDFKDY 80 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHH
T ss_pred hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHH
Confidence 4567898 8 78999999999999999999999999999999999999999999985 44 999999999999999999
Q ss_pred hcCCCCccccCCc-hhHHHHHHHcCCCCccEEEEEC-CCCCEEeccchhhhhhcC-CccCCCCc
Q 018808 251 LGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIG-PDGKTLHSNVAEAIEEHG-VGAFPFTP 311 (350)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~~~~-~~~~p~~~ 311 (350)
+++++|..+|+.. +...++.+.|++.++|+++||| ++|+++.++.+..+.+.. ...|||.+
T Consensus 81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~ 144 (144)
T 1i5g_A 81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWPN 144 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred HHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCCC
Confidence 9999999999876 6678899999999999999999 999999999877665444 45788863
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=183.71 Aligned_cols=138 Identities=34% Similarity=0.616 Sum_probs=123.2
Q ss_pred hhcccccCCc--eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhc-CCCcEEEEEEeCCCCHHHHH
Q 018808 172 SVLTSHSRDF--VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 172 ~~~~~~~p~f--~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~ 248 (350)
..+|.++|+| +.+.+| .+++++++||++||+||++||++|+.++|.|+++++++++ .+ ++|++|++|.+.++++
T Consensus 22 ~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--v~vv~v~~d~~~~~~~ 98 (165)
T 3s9f_A 22 SGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN--FEIILASWDEEEDDFN 98 (165)
T ss_dssp CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHH
T ss_pred hhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCC--eEEEEEecCCCHHHHH
Confidence 3567788888 678999 9999999999999999999999999999999999999986 44 9999999999999999
Q ss_pred HhhcCCCCccccCCchhH-HHHHHHcCCCCccEEEEECCC-CCEEeccchhhh-hhcCCccCCCCcc
Q 018808 249 RDLGSMPWLALPFKDKSR-EKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAI-EEHGVGAFPFTPE 312 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~-~~~~~~~~p~~~~ 312 (350)
+++.+++|..+++..+.. .++++.|++.++|+++|||++ |+|+.+..+... .+.....|||..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~~ 165 (165)
T 3s9f_A 99 AYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRDE 165 (165)
T ss_dssp HHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCCC
T ss_pred HHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCCC
Confidence 999999999999887665 899999999999999999998 999999976544 5666678999864
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=175.13 Aligned_cols=136 Identities=31% Similarity=0.602 Sum_probs=121.3
Q ss_pred cccccCC-c-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhc-CCCcEEEEEEeCCCCHHHHHHh
Q 018808 174 LTSHSRD-F-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 174 ~~~~~p~-f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
++..+|+ | +.+.+| .+++++++||++||+||++||++|+.++|.|+++++++++ .+ +.+++|++|.+.++++++
T Consensus 4 ~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~ 80 (146)
T 1o8x_A 4 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWDEEEDGFAGY 80 (146)
T ss_dssp GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHHHH
T ss_pred hHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCC--eEEEEEeCCCCHHHHHHH
Confidence 5677899 8 789999 9999999999999999999999999999999999999984 44 999999999999999999
Q ss_pred hcCCCCccccCCc-hhHHHHHHHcCCCCccEEEEEC-CCCCEEeccchhhhhh-cCCccCCCCcc
Q 018808 251 LGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIG-PDGKTLHSNVAEAIEE-HGVGAFPFTPE 312 (350)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~~-~~~~~~p~~~~ 312 (350)
+++++|..+++.. +...++.+.|++.++|+++||| ++|+++.+..+....+ .....|||.+.
T Consensus 81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~~ 145 (146)
T 1o8x_A 81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDA 145 (146)
T ss_dssp HTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred HHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCCC
Confidence 9999998998876 6678899999999999999999 9999999998765544 44457898865
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=176.05 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=109.8
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHH---HHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
+..+|.++|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.+ +++++++.+ +++++|+.|.+.+.
T Consensus 4 ~~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~~ 81 (142)
T 3eur_A 4 KNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELDE 81 (142)
T ss_dssp TTCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHHH
T ss_pred hhcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHHH
Confidence 45789999999 8899999999999999999999999999999999999999 999998877 99999999999999
Q ss_pred HHHhhcCCCCccccCCchhHH--HHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 247 FKRDLGSMPWLALPFKDKSRE--KLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+++++.+++ ..++...|... .+.+.|++.++|+++|||++|+|+.+..+
T Consensus 82 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 132 (142)
T 3eur_A 82 WKKHRNDFA-KEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDAT 132 (142)
T ss_dssp HHHHGGGSC-TTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEEC
T ss_pred HHHHHHhcc-cccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCCC
Confidence 999999876 35555555443 47889999999999999999999998765
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=174.24 Aligned_cols=119 Identities=14% Similarity=0.262 Sum_probs=109.3
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHH---HHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
.+|.++|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.+ +++++++.+ +.+++|++|.+.+.++
T Consensus 2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~~ 79 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWA 79 (142)
T ss_dssp CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHHH
T ss_pred CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHHH
Confidence 468899999 8899999999999999999999999999999999999998 999998877 9999999999999999
Q ss_pred HhhcCCCCccccCCchhHHHHHH--HcCCCCccEEEEECCCCCEEecc
Q 018808 249 RDLGSMPWLALPFKDKSREKLAR--YFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
+++++++ +++|...|....+.. .|++.++|+++|||++|+++.+.
T Consensus 80 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (142)
T 3ewl_A 80 TKAVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126 (142)
T ss_dssp HHHTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEECS
T ss_pred HHHHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEecC
Confidence 9999887 678888888777766 99999999999999999999854
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=169.16 Aligned_cols=135 Identities=36% Similarity=0.619 Sum_probs=119.7
Q ss_pred hcccccCCc--eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhc-CCCcEEEEEEeCCCCHHHHHH
Q 018808 173 VLTSHSRDF--VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 173 ~~~~~~p~f--~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.+|..+|+| +.+.+| .+++++++||++||+||++||++|+.++|.|+++++++++ .+ +.+++|++|.+.+++++
T Consensus 3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~i~~d~~~~~~~~ 79 (144)
T 1o73_A 3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWDENESDFHD 79 (144)
T ss_dssp GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHH
T ss_pred chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHH
Confidence 357789997 679999 9999999999999999999999999999999999999983 44 99999999999999999
Q ss_pred hhcCCCCccccCCc-hhHHHHHHHcCCCCccEEEEEC-CCCCEEeccchhhhh-hcCCccCCCC
Q 018808 250 DLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIG-PDGKTLHSNVAEAIE-EHGVGAFPFT 310 (350)
Q Consensus 250 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~-~~~~~~~p~~ 310 (350)
++++++|..+++.. +...++.+.|++.++|+++||| ++|+++.+..+.... +.....|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W~ 143 (144)
T 1o73_A 80 YYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp HHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCCC
Confidence 99999999999876 5577899999999999999999 899999999776554 4444678886
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-25 Score=179.30 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=103.7
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||+++|+|| ++|||+|+.++|.|+++++++++.+ +.+++|+.| +.+..++|
T Consensus 5 ~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d-~~~~~~~~ 81 (157)
T 4g2e_A 5 EIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVD-PPFSNKAF 81 (157)
T ss_dssp CTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESS-CHHHHHHH
T ss_pred CCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeeccc-chhHHHHH
Confidence 468999999 889999999999999999999999 9999999999999999999999888 999999998 67778888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+++. ++||++.|.++++++.||+. ..|++||||++|+|++++.+.
T Consensus 82 ~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~ 138 (157)
T 4g2e_A 82 KEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSD 138 (157)
T ss_dssp HHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEES
T ss_pred HHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECC
Confidence 88776 68899999999999999983 478999999999999988763
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=173.42 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=109.5
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
.+|.++|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++++ +.+++|++|.+.+.+++++
T Consensus 4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~ 81 (152)
T 2lrn_A 4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAI 81 (152)
T ss_dssp CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHHH
T ss_pred cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHH
Confidence 467889999 7899999999999999999999999999999999999999999999877 9999999999999999998
Q ss_pred cCCCCccccCCchh---HHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 252 GSMPWLALPFKDKS---REKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
.+++ ++++...|. ..++.+.|++.++|+++|||++|+++.+..
T Consensus 82 ~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 127 (152)
T 2lrn_A 82 EEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKEL 127 (152)
T ss_dssp HHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEECC
T ss_pred HHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEeeC
Confidence 8665 566776666 688999999999999999999999999864
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=170.67 Aligned_cols=121 Identities=23% Similarity=0.336 Sum_probs=109.4
Q ss_pred hhcccccCCc-eecCCCceeecc--ccCCCEEEEEEeccCCcc--ChhhHHHHHHHHHHH-hcCCCcEEEEEEeCCCCHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVS--DLEGKTIGLYFSMSSYKA--SAEFTPRLVEVYEKL-KGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~--~~~gk~vlv~f~~~~C~~--C~~~~~~l~~~~~~~-~~~~~~~~vv~v~~d~~~~ 245 (350)
-.+|.++|+| +.+.+|+.++++ +++||++||+||++||++ |+.++|.|.++++++ ++++ +.+++|++|.+.+
T Consensus 5 l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~ 82 (150)
T 3fw2_A 5 SEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVDKQ 82 (150)
T ss_dssp TSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSCHH
T ss_pred ccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCCHH
Confidence 3568999999 899999999999 999999999999999999 999999999999999 7776 9999999999999
Q ss_pred HHHHhhcCCCCccccCCchh---HHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 246 SFKRDLGSMPWLALPFKDKS---REKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
.+++++++++ ++++.+.+. ..++.+.|++.++|+++|||++|+++.+..
T Consensus 83 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 134 (150)
T 3fw2_A 83 QWKDAIKRDT-LDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL 134 (150)
T ss_dssp HHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC
T ss_pred HHHHHHHHhC-CCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC
Confidence 9999998765 455555554 678999999999999999999999999875
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=175.15 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=111.8
Q ss_pred hcccccCCc-eecCCCceeeccccCCCE-EEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKT-IGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~-vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.+|.++|+| +.+.+|+.+++++++||+ +||+|| ++||++|+.++|.|+++++++++++ +++++|++| +.+.+++
T Consensus 3 ~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d-~~~~~~~ 79 (161)
T 3drn_A 3 KVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD-DINSHKR 79 (161)
T ss_dssp CTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC-CHHHHHH
T ss_pred CCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC-CHHHHHH
Confidence 468899999 889999999999999997 999999 9999999999999999999999887 999999998 6889999
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCCC----ccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELST----LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~P~~~lid~~G~i~~~~~~ 296 (350)
|.+++. ++++++.|...++.+.|++.+ +|+++|||++|+|+.++.|
T Consensus 80 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g 129 (161)
T 3drn_A 80 FKEKYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNS 129 (161)
T ss_dssp HHHHTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEEC
T ss_pred HHHHhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEec
Confidence 998876 678888888889999999999 9999999999999999877
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-24 Score=171.59 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=111.3
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhc
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG 252 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 252 (350)
+|..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++++ +.+++|++|.+.+.++++++
T Consensus 2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~ 79 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMK 79 (151)
T ss_dssp CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHH
T ss_pred CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHH
Confidence 57789999 7899999999999999999999999999999999999999999998876 99999999988899999988
Q ss_pred CCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 253 SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+++ +.+++..|...++.+.|++.++|+++|||++|+++.+..|
T Consensus 80 ~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G 122 (151)
T 2f9s_A 80 SYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122 (151)
T ss_dssp HHT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEES
T ss_pred HcC-CCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeC
Confidence 776 5788888888899999999999999999999999998877
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=169.98 Aligned_cols=120 Identities=22% Similarity=0.363 Sum_probs=107.4
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
...+..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++++ +++++|++|...+.++++
T Consensus 9 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~ 86 (152)
T 2lrt_A 9 KIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTS 86 (152)
T ss_dssp SSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHH
T ss_pred hccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHH
Confidence 4567889999 8899999999999999999999999999999999999999999999887 999999999988888888
Q ss_pred hcCCCCccccCCchhHH---HHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSRE---KLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~---~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.... +++.+.|... .+.+.|++.++|+++|||++|+++.+..|
T Consensus 87 ~~~~---~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 132 (152)
T 2lrt_A 87 ADNL---PWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGEN 132 (152)
T ss_dssp HTTC---SSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTT
T ss_pred HhCC---CceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecCC
Confidence 8764 4555555544 49999999999999999999999999887
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=171.93 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=101.4
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
-.+|..+|+| + +.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ +++++|++|.+.+.++++
T Consensus 7 l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~ 83 (143)
T 4fo5_A 7 VNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTET 83 (143)
T ss_dssp SSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHHH
T ss_pred cCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHHH
Confidence 3578899999 6 89999999999999999999999999999999999999999998877 999999999999999999
Q ss_pred hcCCCCccc-cCC---chhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLAL-PFK---DKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~-~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++. +++ +.. .+...++.+.|++.++|+++|||++|+|+.+..+
T Consensus 84 ~~~~~-~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 132 (143)
T 4fo5_A 84 VKIDK-LDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVT 132 (143)
T ss_dssp HHHHT-CCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEESCC
T ss_pred HHHhC-CCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEccCC
Confidence 98654 333 222 3334689999999999999999999999998765
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=170.22 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=112.2
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
..+|.++|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++++ +.+++|++|++.++++++
T Consensus 5 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~ 82 (148)
T 3hcz_A 5 LLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKF 82 (148)
T ss_dssp CCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHHHH
T ss_pred cCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHHHH
Confidence 4578999999 7899999999999999999999999999999999999999999999887 999999999888899999
Q ss_pred hcCCCCccccCCchhHHH--HHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREK--LARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++++...++...|.... +.+.|++.++|+++|||++|+++.+..|
T Consensus 83 ~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 130 (148)
T 3hcz_A 83 IRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIG 130 (148)
T ss_dssp HHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCC
T ss_pred HHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCC
Confidence 997764447777777666 9999999999999999999999999876
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-24 Score=174.69 Aligned_cols=137 Identities=32% Similarity=0.688 Sum_probs=121.4
Q ss_pred hhcCccCCc-ee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDF-LI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f-~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|.++|+| .+ +.+| .+++++++|| ++|+||++||++|+.++|.|.+++++|+++.++.++.|++|.+.+.+++++
T Consensus 23 ~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~ 101 (165)
T 3s9f_A 23 GVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYY 101 (165)
T ss_dssp HHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHH
T ss_pred hhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHH
Confidence 469999999 77 6788 9999999999 999999999999999999999999999874369999999999999999999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCC-CeEEecCCccc-eecccCcCCCCCh
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGVEI-IREYGVEGYPFTV 151 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~~~~~-~~~~~~~~~p~~~ 151 (350)
+.++|..+++...+....+++.|++.++|+++|+|++ |+++++.+... ..+.....|||..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~ 164 (165)
T 3s9f_A 102 AKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD 164 (165)
T ss_dssp TTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred HhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence 9999999998887777899999999999999999998 99999876533 4455666777753
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-24 Score=172.91 Aligned_cols=123 Identities=11% Similarity=0.191 Sum_probs=110.2
Q ss_pred hhcccccCCc-eec-CCCceeeccccCCCEEEEEEeccCCccChhh-HHHHHHHHHHHhcCCCcEEEEEEeCC------C
Q 018808 172 SVLTSHSRDF-VIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESFEIVLISLD------D 242 (350)
Q Consensus 172 ~~~~~~~p~f-~~~-~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~vv~v~~d------~ 242 (350)
.+.|.++|+| +.+ .+|+.+++++++||++||+||++||++|+.+ +|.|+++++++++++ +.+++|++| +
T Consensus 3 ~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~ 80 (160)
T 3lor_A 3 SLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVM 80 (160)
T ss_dssp -CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGS
T ss_pred ccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEeccccccccC
Confidence 3467899999 677 8999999999999999999999999999995 999999999999887 999999984 6
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHH------HHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLGSMPWLALPFKDKSREK------LARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+.+++|++.++ +++|+..+.... +.+.|++.++|+++|||++|+++.++.|.
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 140 (160)
T 3lor_A 81 TPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQ 140 (160)
T ss_dssp CHHHHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESC
T ss_pred CHHHHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCc
Confidence 8899999999876 567777777666 99999999999999999999999998873
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=165.81 Aligned_cols=136 Identities=35% Similarity=0.685 Sum_probs=118.9
Q ss_pred hcCccCC-cee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARD-FLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~-f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|+.+|+ |++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++++++.++.++.|++|.+.+.++++.+
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 82 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYA 82 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHT
T ss_pred hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHH
Confidence 5789999 988 689999999999999 9999999999999999999999999998533699999999999999999999
Q ss_pred cCCCcccccCChhhHHHHHhhcCCCCcceEEEEC-CCCeEEecCCcccee-cccCcCCCCC
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEIIR-EYGVEGYPFT 150 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~~~~~~~-~~~~~~~p~~ 150 (350)
.++|..+++...+....+++.|++.++|+++|+| ++|+++++.+...+. +.....+||.
T Consensus 83 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (144)
T 1i5g_A 83 KMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp TCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred hCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence 9999899888667778999999999999999999 999999987655443 2334555653
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=171.54 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=107.7
Q ss_pred cccccCCc-eec--CCCceeeccccCCCEEEEEEeccCCccChhh-HHHHHHHHHHHhcCCCcEEEEEEeCC------CC
Q 018808 174 LTSHSRDF-VIS--SDGRKISVSDLEGKTIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESFEIVLISLD------DE 243 (350)
Q Consensus 174 ~~~~~p~f-~~~--~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~vv~v~~d------~~ 243 (350)
.|.++|+| +.+ .+|+.+++++++||++||+||++||++|+.+ +|.|+++++++++++ +.+++|++| ++
T Consensus 2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~ 79 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMT 79 (158)
T ss_dssp CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSC
T ss_pred CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEecccccccCC
Confidence 36789999 677 4789999999999999999999999999996 999999999998777 999999984 58
Q ss_pred HHHHHHhhcCCCCccccCCchhHH-----HHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 244 EESFKRDLGSMPWLALPFKDKSRE-----KLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+.+++|+++++ +++|...+... ++++.|++.++|+++|||++|+++.++.|.
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 137 (158)
T 3eyt_A 80 PISLKAFLHEYR-IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGD 137 (158)
T ss_dssp HHHHHHHHHHTT-CCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESC
T ss_pred HHHHHHHHHHcC-CCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 899999999876 56777777665 799999999999999999999999998873
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=167.81 Aligned_cols=121 Identities=22% Similarity=0.329 Sum_probs=112.5
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
.+|.++|+| +.+ +|+.+++++++||++||+||++||++|+.+++.|.++++++++++ +.+++|++|.+.+++++++
T Consensus 4 ~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 80 (152)
T 3gl3_A 4 DKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFL 80 (152)
T ss_dssp CTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHHH
T ss_pred CCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHHH
Confidence 468899999 778 999999999999999999999999999999999999999999887 9999999999999999999
Q ss_pred cCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 252 GSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+++ +.+++..|...++.+.|++.++|+++|||++|+++.+..|.
T Consensus 81 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 125 (152)
T 3gl3_A 81 AQVP-AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGF 125 (152)
T ss_dssp HHSC-CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESC
T ss_pred HHcC-CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccC
Confidence 8877 57888888888999999999999999999999999998873
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=178.19 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=108.9
Q ss_pred hcccccCCc-eecCCCceeecccc--CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDL--EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~--~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
.+|.++|+| +.+.+|+.++++++ +||+++|+|| ++|||+|..+++.|+++++++++.+ +.+++||.| +.+..+
T Consensus 6 ~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d-~~~~~~ 82 (164)
T 4gqc_A 6 ELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLK 82 (164)
T ss_dssp CTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESS-CHHHHH
T ss_pred cCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCC-CHHHHH
Confidence 368999999 88999999999998 8998888887 9999999999999999999999988 999999997 677888
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCCC----------CccEEEEECCCCCEEeccchh
Q 018808 249 RDLGSMPWLALPFKDKSREKLARYFELS----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+|.+++. ++||++.|.++++++.||+. ..|++||||++|+|++++.+.
T Consensus 83 ~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~ 140 (164)
T 4gqc_A 83 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD 140 (164)
T ss_dssp HHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS
T ss_pred HHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeC
Confidence 8888776 78999999999999999983 478999999999999988763
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=171.53 Aligned_cols=188 Identities=12% Similarity=0.171 Sum_probs=126.9
Q ss_pred CCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 35 SLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 35 ~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
...+. ++++||++ ||++|+.+.|.|.++.+. . +++.++.|+++... +..+++.
T Consensus 19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~--~~v~~~~vd~~~~~----------------------~~~~~~~ 73 (226)
T 1a8l_A 19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T--DKLSYEIVDFDTPE----------------------GKELAKR 73 (226)
T ss_dssp GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C--TTEEEEEEETTSHH----------------------HHHHHHH
T ss_pred hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C--CceEEEEEeCCCcc----------------------cHHHHHH
Confidence 34556 88999999 999999999999998754 2 25999999887521 1378999
Q ss_pred cCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCceee-
Q 018808 113 FKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS- 191 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v~- 191 (350)
|++.++|+++++ ++|+... .+..|. .....+..+......... . . ...+...+.
T Consensus 74 ~~v~~~Pt~~~~-~~g~~~~------~~~~G~----~~~~~l~~~l~~~l~~~~--~--------~----~~l~~~~~~~ 128 (226)
T 1a8l_A 74 YRIDRAPATTIT-QDGKDFG------VRYFGL----PAGHEFAAFLEDIVDVSR--E--------E----TNLMDETKQA 128 (226)
T ss_dssp TTCCSSSEEEEE-ETTBCCS------EEEESC----CCTTHHHHHHHHHHHHHH--T--------C----CCCCHHHHHH
T ss_pred cCCCcCceEEEE-cCCceee------EEEecc----CcHHHHHHHHHHHHhhcC--C--------C----CCCCHHHHHH
Confidence 999999999999 4553210 000111 122333333332211100 0 0 001111111
Q ss_pred ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 192 l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
+....+++++|.||++||++|+.+.|.+.++++++.+++ .++.++.|+++.. .+++
T Consensus 129 ~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~ 185 (226)
T 1a8l_A 129 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWA 185 (226)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHH
T ss_pred HHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccC-----------------------HHHH
Confidence 112334566999999999999999999999999997321 1289999987743 5588
Q ss_pred HHcCCCCccEEEEECCCCCEEeccch
Q 018808 271 RYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+|.++|+++++ ++|+.+.+..|
T Consensus 186 ~~~~v~~~Pt~~~~-~~G~~~~~~~G 210 (226)
T 1a8l_A 186 DQYNVMAVPKIVIQ-VNGEDRVEFEG 210 (226)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEEEEES
T ss_pred HhCCCcccCeEEEE-eCCceeEEEcC
Confidence 99999999998888 79998888777
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=163.29 Aligned_cols=120 Identities=21% Similarity=0.255 Sum_probs=106.6
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHH---HHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE---VYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~---l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
..+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+ ++++++++ ++.+++|+.|.+.+.++
T Consensus 5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~-~~~vi~i~~d~~~~~~~ 83 (142)
T 3eur_A 5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK-KLKVLSIYPDEELDEWK 83 (142)
T ss_dssp TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT-SEEEEEEECSSCHHHHH
T ss_pred hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC-CeEEEEEEcCCCHHHHH
Confidence 457999999988 689999999999999 9999999999999999999999 99999876 49999999999999999
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++++.++.......+.+....+.+.|++.++|+++|+|++|+++++
T Consensus 84 ~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (142)
T 3eur_A 84 KHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLK 129 (142)
T ss_dssp HHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEE
T ss_pred HHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEec
Confidence 9999887544445555544467899999999999999999999985
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=177.84 Aligned_cols=122 Identities=11% Similarity=0.270 Sum_probs=112.0
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCC-EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD------- 241 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d------- 241 (350)
.-.+|.++|+| +.+.+|+.+++++++|| ++||+||++|||+|+.++|.|+++++++++++ ++|++|++|
T Consensus 31 ~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~ 108 (218)
T 3u5r_E 31 SITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPE 108 (218)
T ss_dssp CCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGG
T ss_pred cCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCccccccc
Confidence 34578999999 89999999999999999 59999999999999999999999999999887 999999997
Q ss_pred CCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
++.+.+++|++++. +++|++.|...++.+.|++..+|+++|||++|+|+++..
T Consensus 109 d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~ 161 (218)
T 3u5r_E 109 ETLERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQ 161 (218)
T ss_dssp GSHHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEEC
T ss_pred CCHHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEecc
Confidence 68899999998776 688888888889999999999999999999999997643
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=163.33 Aligned_cols=136 Identities=40% Similarity=0.778 Sum_probs=117.5
Q ss_pred hhcCccCC-cee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARD-FLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~-f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|+.+|+ |++ +.+| .+++++++|| ++|+||++||++|+.+.|.|.+++++++++.++.++.|++|.+.+.++++.
T Consensus 3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 81 (146)
T 1o8x_A 3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYF 81 (146)
T ss_dssp CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHH
T ss_pred chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHH
Confidence 35889999 887 6899 9999999999 999999999999999999999999999853369999999999999999999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEEC-CCCeEEecCCcccee-cccCcCCCCC
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEIIR-EYGVEGYPFT 150 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~~~~~~~-~~~~~~~p~~ 150 (350)
+.++|..+++...+....+++.|++.++|+++++| ++|+++++.+...+. +.....+||.
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (146)
T 1o8x_A 82 AKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 143 (146)
T ss_dssp TTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred HHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCC
Confidence 99999888887656677999999999999999999 899999987654433 3344455654
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=166.48 Aligned_cols=122 Identities=20% Similarity=0.333 Sum_probs=109.6
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
....|.++|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++++ +.+++|++|++.+.+++
T Consensus 7 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~ 84 (165)
T 3or5_A 7 ADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKN 84 (165)
T ss_dssp CCCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHH
T ss_pred hhcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHH
Confidence 34678899999 7899999999999999999999999999999999999999999999877 99999999999999999
Q ss_pred hhcCCCCccccCCchhHHHHHHHc------CCCCccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDKSREKLARYF------ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++++ +.++...+.. ++.+.| ++.++|+++|||++|+++.+..|
T Consensus 85 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 135 (165)
T 3or5_A 85 YMKTQG-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVG 135 (165)
T ss_dssp HHHHHT-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECS
T ss_pred HHHHcC-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcC
Confidence 988765 5667666654 778888 89999999999999999998877
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-23 Score=164.15 Aligned_cols=121 Identities=23% Similarity=0.338 Sum_probs=109.1
Q ss_pred hhcccccCCc-eecCCCceeecc--ccCCCEEEEEEeccCCccChhhHHHHHHHHHHH-hcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVS--DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKL-KGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~--~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~~vv~v~~d~~~~~~ 247 (350)
-.+|.++|+| +.+.+|+.++++ +++||++||+||++||++|+.++|.|.++++++ .+++ +.+++|++|.+.+.+
T Consensus 5 ~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~ 82 (148)
T 3fkf_A 5 VTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAW 82 (148)
T ss_dssp CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCHHHH
T ss_pred ccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCHHHH
Confidence 4578899999 889999999999 999999999999999999999999999999999 7777 999999999999999
Q ss_pred HHhhcCCCCccccCCchh---HHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 248 KRDLGSMPWLALPFKDKS---REKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
++++..++ ++++...+. ...+.+.|++.++|++++||++|+++.+..
T Consensus 83 ~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 132 (148)
T 3fkf_A 83 ETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI 132 (148)
T ss_dssp HHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC
T ss_pred HHHHHHcC-CCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC
Confidence 99998765 455555554 678999999999999999999999998875
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-23 Score=164.93 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=100.0
Q ss_pred cccCCceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCC
Q 018808 176 SHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 255 (350)
Q Consensus 176 ~~~p~f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 255 (350)
.++|+|....+|+.+++++++||++||+||++||++|+.++|.|.++++++++.+ +.+++|++| +.+++++|++.++
T Consensus 3 ~pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d-~~~~~~~~~~~~~ 79 (151)
T 3raz_A 3 LSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALD-TSDNIGNFLKQTP 79 (151)
T ss_dssp ----CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESS-CHHHHHHHHHHSC
T ss_pred CCcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECC-ChHHHHHHHHHcC
Confidence 3566665558999999999999999999999999999999999999999997766 999999997 5778889988765
Q ss_pred CccccCCc---hhHHHHHHHcC--CCCccEEEEECCCCCEEeccchh
Q 018808 256 WLALPFKD---KSREKLARYFE--LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 256 ~~~~~~~~---~~~~~~~~~~~--v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++|... +...++.+.|+ +.++|+++|||++|+++.+..|.
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 125 (151)
T 3raz_A 80 -VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGE 125 (151)
T ss_dssp -CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSC
T ss_pred -CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCC
Confidence 5566543 33678999999 99999999999999999998873
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=164.65 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=109.2
Q ss_pred hcccccC-Cc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSR-DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p-~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++| +| +.+.+|+.+++++++||++||+||++||++|+.+++.|.++++++++++ +.+++|++|.+.+.++++
T Consensus 4 ~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~ 81 (152)
T 2lja_A 4 RSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENM 81 (152)
T ss_dssp TTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHHH
T ss_pred ccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHHH
Confidence 4678899 99 7899999999999999999999999999999999999999999998776 999999999988889999
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.+..+..+++..+...++.+.|++.++|+++|+|++|+++.+..|
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 127 (152)
T 2lja_A 82 VTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMT 127 (152)
T ss_dssp HHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCC
T ss_pred HHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCC
Confidence 8866543345556666789999999999999999999999998876
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=167.53 Aligned_cols=122 Identities=18% Similarity=0.360 Sum_probs=112.1
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC-HHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||++||+||++||++|+.+++.|.++++++++.+ +.+++|++|.+ .+.++++
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 80 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEF 80 (154)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTTHHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCcchHHHHHH
Confidence 468899999 8899999999999999999999999999999999999999999999876 99999999976 7888888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+..+. +++++..+....+.+.|++.++|+++|||++|+++.+..|.
T Consensus 81 ~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 126 (154)
T 3kcm_A 81 FRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGA 126 (154)
T ss_dssp HHHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESC
T ss_pred HHHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCC
Confidence 88775 56888888888999999999999999999999999998774
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=161.72 Aligned_cols=135 Identities=37% Similarity=0.738 Sum_probs=117.1
Q ss_pred hhcCccCCc-ee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDF-LI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f-~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+.+|+| ++ +.+| .+++++++|| ++|+||++||++|+.+.|.|.+++++++++.++.++.|++|.+.+.++++.
T Consensus 3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~ 81 (144)
T 1o73_A 3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYY 81 (144)
T ss_dssp GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHH
Confidence 468999998 77 6799 9999999999 999999999999999999999999999843369999999999999999999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEEC-CCCeEEecCCcccee-cccCcCCCC
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEIIR-EYGVEGYPF 149 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~~~~~~~-~~~~~~~p~ 149 (350)
+.++|..+++...+....+++.|++.++|+++++| ++|+++++.+...+. +.....|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W 142 (144)
T 1o73_A 82 GKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW 142 (144)
T ss_dssp TTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred HhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCC
Confidence 99999999887667778999999999999999999 899999987654433 334444555
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=163.64 Aligned_cols=122 Identities=22% Similarity=0.377 Sum_probs=109.4
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKR 249 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~ 249 (350)
..+|..+|+| +.+.+|+.+++++++||++||+||++||++|+.+++.|.++++++++.+ +.+++|+.+ ++.+.+++
T Consensus 2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~ 79 (153)
T 2l5o_A 2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQ 79 (153)
T ss_dssp --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTTSCHHHHHH
T ss_pred CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCCCCHHHHHH
Confidence 3578899999 8899999999999999999999999999999999999999999999877 999999986 57788888
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++..++ +.+++..+...++.+.|++.++|+++|||++|+++.++.|
T Consensus 80 ~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 125 (153)
T 2l5o_A 80 YVKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVG 125 (153)
T ss_dssp HHHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEES
T ss_pred HHHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcC
Confidence 888775 5677777777889999999999999999999999988877
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=173.43 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=101.5
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEE 245 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~ 245 (350)
.+.++|+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|+++++++++++ ++|++|++| ++.+
T Consensus 22 ~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~e~~~~~ 99 (187)
T 3dwv_A 22 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQEPGNEE 99 (187)
T ss_dssp TCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSCSSSBTT
T ss_pred CCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCCCCCCHH
Confidence 35689999 8999999999999999999999999999999999999999999999987 999999998 4678
Q ss_pred HHHHhhcCCCCccccCCc--hhHH----HHH--------HHcCCCCcc---EEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPWLALPFKD--KSRE----KLA--------RYFELSTLP---TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~--~~~~----~~~--------~~~~v~~~P---~~~lid~~G~i~~~~~~~ 297 (350)
++++|+++...+++|+.. +... .+. ..+++..+| ++||||++|+|+.++.|.
T Consensus 100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~ 168 (187)
T 3dwv_A 100 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPG 168 (187)
T ss_dssp HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTT
T ss_pred HHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCC
Confidence 899999854336676653 2111 111 345667788 999999999999998773
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=168.66 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=109.7
Q ss_pred hhcccccCCc-eecC--CCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcE------EEEEEeCCC
Q 018808 172 SVLTSHSRDF-VISS--DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESF------EIVLISLDD 242 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~--~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~------~vv~v~~d~ 242 (350)
...+.++|+| +.+. +|+.+++++++||++||+||++||++|+.++|.|+++++++++++ + .+++|++|.
T Consensus 31 ~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~ 108 (183)
T 3lwa_A 31 EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRD 108 (183)
T ss_dssp GGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSC
T ss_pred cccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCC
Confidence 3457889999 7899 999999999999999999999999999999999999999999887 7 999999998
Q ss_pred -CHHHHHHhhcCCCCccccCCchhHHHHHHHcC---CCCccEEEEECCCCCEEeccch
Q 018808 243 -EEESFKRDLGSMPWLALPFKDKSREKLARYFE---LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.+.+++|++++. +++|++.|....+.+.|+ +.++|+++|||++|+++.++.|
T Consensus 109 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 165 (183)
T 3lwa_A 109 YSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLR 165 (183)
T ss_dssp CCHHHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECS
T ss_pred CCHHHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcC
Confidence 8899999998876 668888888777888874 8899999999999999998877
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=173.85 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=109.1
Q ss_pred hhcccccCCc-eecC--CC--ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 172 SVLTSHSRDF-VISS--DG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~--~g--~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
..+|.++|+| +.+. +| +.++++++ +||++||+|| ++|||+|+.++|.|++++++|++++ ++|++|++| +.
T Consensus 25 l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D-~~ 101 (221)
T 2c0d_A 25 SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVD-SV 101 (221)
T ss_dssp -CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESS-CH
T ss_pred CCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CH
Confidence 3578899999 7787 89 99999999 9999999999 9999999999999999999999877 999999997 56
Q ss_pred HHHHHhhcCCC------CccccCCchhHHHHHHHcCC-----CCccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSMP------WLALPFKDKSREKLARYFEL-----STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v-----~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+..++|.+.+. .++||++.|...++++.||+ ..+|++||||++|+|+++..+.
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~ 165 (221)
T 2c0d_A 102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVND 165 (221)
T ss_dssp HHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecC
Confidence 67778887661 46788888888899999999 4799999999999999998763
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-23 Score=171.82 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=107.0
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
..+|.++|+| +.+.+|+.+++++++||++||+|| ++||++|+.+++.|+++++++++++ ++|++|+.| +.+..++
T Consensus 25 d~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D-~~~~~~~ 101 (179)
T 3ixr_A 25 DTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRD-SVKSHDS 101 (179)
T ss_dssp CBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESC-CHHHHHH
T ss_pred cccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHH
Confidence 3445559999 889999999999999999999998 9999999999999999999999888 999999998 6777888
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCCC------------ccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELST------------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~ 296 (350)
|++++. ++||++.|.+.++++.|++.. .|++||||++|+|++.+.+
T Consensus 102 ~~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~ 159 (179)
T 3ixr_A 102 FCAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQ 159 (179)
T ss_dssp HHHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECS
T ss_pred HHHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcC
Confidence 887665 678888888889999999853 6999999999999988743
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-23 Score=167.70 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=110.1
Q ss_pred hhcccccCCce---ecCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDFV---ISSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f~---~~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
-.+|.++|+|. .+.+|+.+++++++||++||+||+ +|||+|+.+++.|+++++++++++ +++++|++| +.+.+
T Consensus 7 l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~ 83 (163)
T 3gkn_A 7 AVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSH 83 (163)
T ss_dssp CCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHH
T ss_pred cccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHH
Confidence 35788999994 689999999999999999999998 999999999999999999999888 999999998 88888
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCCCC------------ccEEEEECCCCCEEeccch
Q 018808 248 KRDLGSMPWLALPFKDKSREKLARYFELST------------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~ 296 (350)
++|.++++ +++|++.|...++.+.||+.. +|++||||++|+|++.+.+
T Consensus 84 ~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~ 143 (163)
T 3gkn_A 84 DNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRK 143 (163)
T ss_dssp HHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECS
T ss_pred HHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcC
Confidence 88988765 678888888889999999977 9999999999999988744
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=168.90 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=107.4
Q ss_pred hhhcccccCCc-eecCCC--ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 171 RSVLTSHSRDF-VISSDG--RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g--~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
...+|.++|+| +.+.+| +.+++++++||++||+||++||++|+.++|.|++++++ + +.+++|++|++.+.+
T Consensus 29 ~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~d~~~~~ 102 (176)
T 3kh7_A 29 SALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYKDDNAAA 102 (176)
T ss_dssp TTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEESCCHHHH
T ss_pred ccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCCCCHHHH
Confidence 35679999999 789988 89999999999999999999999999999999999876 4 999999999999999
Q ss_pred HHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|++++. +.++ +..|...++.+.|++.++|++||||++|+|+.+..|.
T Consensus 103 ~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 152 (176)
T 3kh7_A 103 IKWLNELH-NPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGV 152 (176)
T ss_dssp HHHHHHTT-CCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEESC
T ss_pred HHHHHHcC-CCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEcCC
Confidence 99999876 3444 4667778899999999999999999999999998774
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=157.15 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=106.3
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEe-----CCCCHHHHHHh
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS-----LDDEEESFKRD 250 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~-----~d~~~~~~~~~ 250 (350)
++|+| +.+.+|+.+++++++||++||+||++||++|+.+++.|.++++++... +.++.|. .+++.+.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~v~i~~~~~~~~~~~~~~~~~ 77 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDD---YVVLTVVSPGHKGEQSEADFKNW 77 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTT---EEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCC---cEEEEEEcCCCCchhhHHHHHHH
Confidence 47899 889999999999999999999999999999999999999999985433 9999994 45688999999
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.+++..++...+...++.+.|++.++|+++|+|++|+++.++.|
T Consensus 78 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 123 (138)
T 4evm_A 78 YKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPG 123 (138)
T ss_dssp HTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred HhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeecC
Confidence 9988866888888888899999999999999999999999998877
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=161.19 Aligned_cols=122 Identities=16% Similarity=0.306 Sum_probs=109.9
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC---CHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~ 247 (350)
..+|.++|+| +.+.+|+.+++++ +||++||+||++||++|+.+++.|.+++++++..+ +.+++|++|. +.+.+
T Consensus 9 ~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~ 85 (145)
T 3erw_A 9 EKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVV 85 (145)
T ss_dssp ---CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHHH
T ss_pred ccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHHH
Confidence 4568899999 8899999999999 99999999999999999999999999999998666 9999999985 88999
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++...+. +++++..+...++.+.|++.++|+++|+|++|+++.+..|.
T Consensus 86 ~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 134 (145)
T 3erw_A 86 EDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGP 134 (145)
T ss_dssp HHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEESC
T ss_pred HHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcCC
Confidence 99998776 67888888888999999999999999999999999988773
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=161.38 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=99.5
Q ss_pred hhhcCccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 13 SLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 13 ~~~g~~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
--+|+++|+|+++.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|+++ ++.+++|++|.+.+.++++++
T Consensus 7 l~~G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~ 85 (143)
T 4fo5_A 7 VNPGDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVK 85 (143)
T ss_dssp SSTTSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHH
T ss_pred cCCcccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHH
Confidence 357999999988889999999999999 999999999999999999999999999877 499999999999999999998
Q ss_pred cCCCcc-cccCC-hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLA-VPFSD-SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~-~~~~~-~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.++... ..+.+ ......+++.|++.++|+++|+|++|+++++
T Consensus 86 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 86 IDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAA 129 (143)
T ss_dssp HHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEE
T ss_pred HhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEc
Confidence 765433 22222 2223579999999999999999999999986
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=168.74 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=109.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC-HHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~ 250 (350)
..|..+|+| +.+.+|+.+++++++||++||+||++||++|+.+++.|+++++++++.+ +++++|++|.+ .+.++++
T Consensus 35 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~ 112 (186)
T 1jfu_A 35 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTF 112 (186)
T ss_dssp CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHH
T ss_pred cCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCCCHHHHHHH
Confidence 457899999 7899999999999999999999999999999999999999999998766 99999999954 5778888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCC----CccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELS----TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~----~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++++...+++..|....+.+.|++. ++|+++|||++|+|+.++.|.
T Consensus 113 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~ 163 (186)
T 1jfu_A 113 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGP 163 (186)
T ss_dssp HHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESC
T ss_pred HHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecC
Confidence 88776446788888888899999985 899999999999999998773
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=164.98 Aligned_cols=125 Identities=22% Similarity=0.387 Sum_probs=106.4
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCCCcEEEEEEeCC---CCHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DEEES 246 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d---~~~~~ 246 (350)
..+|..+|+| +.+.+|+.+++++++||++||+||++||+ +|+.+++.|.++++++++++.+++|++|++| ++.+.
T Consensus 7 l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~ 86 (174)
T 1xzo_A 7 DPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQ 86 (174)
T ss_dssp SCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHH
T ss_pred CccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHH
Confidence 3568899999 88999999999999999999999999999 9999999999999999987556999999998 57888
Q ss_pred HHHhhcCCCCccc---cCCchhHHHHHHHc----------------CCCCccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSMPWLAL---PFKDKSREKLARYF----------------ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------------~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++|.++++ +++ +++.+.+.++.+.| ++..+|++||||++|+|+.++.|.
T Consensus 87 ~~~~~~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~ 155 (174)
T 1xzo_A 87 LKKFAANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGV 155 (174)
T ss_dssp HHHHHTTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESS
T ss_pred HHHHHHHcC-CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCC
Confidence 999998775 445 66666444444443 467899999999999999998773
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=158.29 Aligned_cols=117 Identities=21% Similarity=0.368 Sum_probs=102.4
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHH---HHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE---VYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~---l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
-+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+ +++++++++ +.+++|++|.+.+.+++
T Consensus 2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~-~~~v~v~~d~~~~~~~~ 80 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT-LRVLAIYPDENREEWAT 80 (142)
T ss_dssp CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS-EEEEEEECSSCHHHHHH
T ss_pred CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC-eEEEEEEecCCHHHHHH
Confidence 36999999988 689999999999999 9999999999999999999998 999998774 99999999999999999
Q ss_pred HHhcCCCcccccCChhhHHHHHh--hcCCCCcceEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVPFSDSETRDKLDE--LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+.+++......+.+. .+.. .|++.++|+++++|++|++++.
T Consensus 81 ~~~~~~~~~~~~~d~~~--~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 81 KAVYMPQGWIVGWNKAG--DIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp HHTTSCTTCEEEECTTC--HHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred HHHHcCCCcceeeCCcc--chhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 99988764444444443 4544 9999999999999999999874
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=171.10 Aligned_cols=116 Identities=11% Similarity=0.212 Sum_probs=97.2
Q ss_pred hhcCccCCcee-cc-CCc--eeecCC-CCCc-EEEEEe-cCCChhhh-hhhHHHHHHHHHhccCCCE-EEEEEECCCCHH
Q 018808 14 LLSSSARDFLI-RS-NGD--QVKLDS-LKGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDF-EVIFVSGDEDDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~-~~-~g~--~~~l~~-~~gk-~~v~F~-~~~C~~C~-~~~~~l~~l~~~~~~~~~~-~~v~i~~d~~~~ 84 (350)
.+|+++|+|++ +. +|+ ++++++ ++|| ++|+|| ++|||+|. .++|.|.+++++|++++ + ++++|+.|+ .+
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~-~~~vv~is~d~-~~ 81 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG-VDDILVVSVND-TF 81 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT-CCEEEEEESSC-HH
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEEcCC-HH
Confidence 36999999988 43 777 999999 8999 999998 99999999 99999999999998875 9 999999874 67
Q ss_pred HHHhHHhcCCCcccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
..++|.+.++...+++. .|....+++.||+. ..|+++|+ ++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~l-~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~ 139 (241)
T 1nm3_A 82 VMNAWKEDEKSENISFI-PDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKM 139 (241)
T ss_dssp HHHHHHHHTTCTTSEEE-ECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEE
T ss_pred HHHHHHHhcCCCceEEE-ECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEE
Confidence 78888888876545543 23345899999986 35899999 99999885
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=167.24 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=109.4
Q ss_pred cccccCCc-eecC--CC--ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 174 LTSHSRDF-VISS--DG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 174 ~~~~~p~f-~~~~--~g--~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
+|.++|+| +.+. +| +.++++++ +||++||+|| ++||++|+.++|.|+++++++++++ ++|++|++| +.+.
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d-~~~~ 78 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVD-SKFT 78 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESS-CHHH
T ss_pred CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeC-CHHH
Confidence 57889999 7777 89 99999999 9999999999 9999999999999999999998877 999999998 5777
Q ss_pred HHHhhcCCC------CccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSMP------WLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|.+.+. .+++|++.|...++.+.||+. .+|+++|||++|+|+++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~ 140 (192)
T 2h01_A 79 HLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNN 140 (192)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGG
T ss_pred HHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCC
Confidence 888887662 478888888888999999999 899999999999999998774
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=164.54 Aligned_cols=122 Identities=9% Similarity=0.142 Sum_probs=109.9
Q ss_pred hhcccccCCc-eecCCCceeeccccCCC-EEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk-~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
-.+|..+|+| +.+.+|+.+++++++|| ++||+|| ++||++|+.+++.|.++++++++++ +++++|++| +.+.++
T Consensus 9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~ 85 (160)
T 1xvw_A 9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG-PPPTHK 85 (160)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC-CHHHHH
T ss_pred CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCC-CHHHHH
Confidence 4578899999 78999999999999998 9999998 9999999999999999999998776 999999998 677888
Q ss_pred HhhcCCCCccccCCchh--HHHHHHHcCCC----Ccc--EEEEECCCCCEEeccchh
Q 018808 249 RDLGSMPWLALPFKDKS--REKLARYFELS----TLP--TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~--~~~~~~~~~v~----~~P--~~~lid~~G~i~~~~~~~ 297 (350)
+|.++++ ++++++.|. ..++.+.|++. ++| +++|||++|+|+.++.|.
T Consensus 86 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~ 141 (160)
T 1xvw_A 86 IWATQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQ 141 (160)
T ss_dssp HHHHHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECC
T ss_pred HHHHhcC-CCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecC
Confidence 8888776 478887774 78899999998 999 999999999999998874
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-22 Score=164.41 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=107.1
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC---------
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD--------- 241 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d--------- 241 (350)
..+|.++|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.+++++++ + +.|++|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~ 86 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALG 86 (165)
T ss_dssp HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHT
T ss_pred ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEecccccccccc
Confidence 3567889999 8899999999999999999999999999999999999999999998 4 999999999
Q ss_pred ---------CCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEe
Q 018808 242 ---------DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLH 292 (350)
Q Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~ 292 (350)
.+.+.+++|.++++..++++..+ ..++.+.|++.++|+++|||++|+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 87 LNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred cccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 79999999999877447888888 789999999999999999999999998
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=167.58 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=107.8
Q ss_pred hcccccCCc-eecC-CC--ceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDF-VISS-DG--RKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~~-~g--~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
.+|.++|+| +.+. +| +.+++++++||++||+||+ +|||+|+.++|.|+++++++++++ ++|++|++| +.+..
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d-~~~~~ 78 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTD-THFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHHH
T ss_pred CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECC-CHHHH
Confidence 367899999 7787 58 8999999999999999995 999999999999999999999877 999999998 56677
Q ss_pred HHhhcCCC---CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|.+++. .++||++.|...++.+.||+. .+|++||||++|+|++++.+.
T Consensus 79 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~ 137 (186)
T 1n8j_A 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTA 137 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecC
Confidence 88887762 367888888888999999997 479999999999999998764
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=164.64 Aligned_cols=121 Identities=12% Similarity=0.241 Sum_probs=108.0
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
...|..+|+| +.+.+|+.+++++++||++||+||++||++|+.+++.|.++++++++.+ +.+++|+.|. +++++
T Consensus 15 ~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~---~~~~~ 89 (158)
T 3hdc_A 15 VRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEK---RFPEK 89 (158)
T ss_dssp CCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSS---SCCGG
T ss_pred cCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCH---HHHHH
Confidence 3568899999 8899999999999999999999999999999999999999999998766 9999999986 34556
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
...+. +++++..+...++.+.|++.++|+++|||++|+++.+..|..
T Consensus 90 ~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~ 136 (158)
T 3hdc_A 90 YRRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGI 136 (158)
T ss_dssp GGGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCC
T ss_pred HHHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCC
Confidence 66554 567888888889999999999999999999999999998854
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=166.79 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=109.2
Q ss_pred cccccCCc-eecCCCc----eeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 174 LTSHSRDF-VISSDGR----KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~----~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
+|..+|+| +.+.+|+ .+++++++||++||+|| ++||++|+.++|.|+++++++++++ +++++|++|. .+..
T Consensus 3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~~ 79 (187)
T 1we0_A 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFVH 79 (187)
T ss_dssp TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHH
Confidence 57889999 7888898 99999999999999999 9999999999999999999999877 9999999984 6777
Q ss_pred HHhhcCCC---CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|.+.+. .++++++.|...++.+.|++. ++|+++|||++|+|+.++.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~ 138 (187)
T 1we0_A 80 KAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINA 138 (187)
T ss_dssp HHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecC
Confidence 88888762 367888888888999999998 999999999999999998774
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=159.01 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=103.3
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcC-C-CcEEEEEEeCCC---CHHHHHH
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGK-G-ESFEIVLISLDD---EEESFKR 249 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~-~-~~~~vv~v~~d~---~~~~~~~ 249 (350)
.+|+| +.+.+|+.+++++++||++||+||++||++ |+.++|.|+++++++++. + .++++++|++|. +.+.+++
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~ 81 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN 81 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence 47899 789999999999999999999999999998 999999999999999862 0 139999999984 5788899
Q ss_pred hhcCCCCccccCC---chhHHHHHHHcCCCCcc---------------EEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFK---DKSREKLARYFELSTLP---------------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P---------------~~~lid~~G~i~~~~~~ 296 (350)
|++.++ .+++.+ .+...++.+.||+..+| +++|||++|+++.++.+
T Consensus 82 ~~~~~~-~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 145 (164)
T 2ggt_A 82 YVKEFS-PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ 145 (164)
T ss_dssp HHHTTC-SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEET
T ss_pred HHHHcC-CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCC
Confidence 998765 445544 56677899999999999 89999999999998876
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=170.39 Aligned_cols=123 Identities=13% Similarity=0.182 Sum_probs=108.1
Q ss_pred hhcccccCCc-eec---CCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 172 SVLTSHSRDF-VIS---SDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 172 ~~~~~~~p~f-~~~---~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
..+|.++|+| +.+ .+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++ ++||+|++| +.+.
T Consensus 19 ~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D-~~~~ 95 (211)
T 2pn8_A 19 YFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVD-SQFT 95 (211)
T ss_dssp CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESS-CHHH
T ss_pred CCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECC-CHHH
Confidence 4578899999 655 356899999999999999999 9999999999999999999999877 999999997 5667
Q ss_pred HHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|.+.+ ..++||++.|...++++.||+. .+|++||||++|+|+++..+.
T Consensus 96 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~ 158 (211)
T 2pn8_A 96 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLND 158 (211)
T ss_dssp HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecC
Confidence 78888766 1478888888888999999994 699999999999999998763
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=171.61 Aligned_cols=124 Identities=14% Similarity=0.211 Sum_probs=107.8
Q ss_pred hhhcccccCCc-ee---cCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH
Q 018808 171 RSVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 171 ~~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 245 (350)
.-.+|.++|+| +. +.+|+.+++++++||++||+||+ +||++|+.++|.|++++++|++++ ++||+|++| +.+
T Consensus 39 ~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D-~~~ 115 (222)
T 3ztl_A 39 VLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTD-SQY 115 (222)
T ss_dssp -CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESS-CHH
T ss_pred cccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECC-CHH
Confidence 45678999999 66 44569999999999999999996 999999999999999999999887 999999998 455
Q ss_pred HHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
...++.+.+ ..++||++.|.+.++.+.|++. .+|++||||++|+|++++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~ 179 (222)
T 3ztl_A 116 SHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIND 179 (222)
T ss_dssp HHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEEC
T ss_pred HHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecC
Confidence 566666544 2588898888889999999998 899999999999999998774
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=169.98 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=111.0
Q ss_pred hhcccccCCc-eecC--CC--ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 172 SVLTSHSRDF-VISS--DG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~--~g--~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
..+|.++|+| +.+. +| +.++++++ +||++||+|| ++||++|+.+++.|++++++|++++ ++||+|++| +.
T Consensus 21 l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D-~~ 97 (213)
T 2i81_A 21 TYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVD-SK 97 (213)
T ss_dssp CCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESS-CH
T ss_pred ccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CH
Confidence 4678999999 7777 89 89999999 9999999999 9999999999999999999998877 999999998 67
Q ss_pred HHHHHhhcCCC------CccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSMP------WLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~ 297 (350)
+..++|.+... .++||++.|...++++.||+. .+|++||||++|+|+++..+.
T Consensus 98 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~ 161 (213)
T 2i81_A 98 YTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNN 161 (213)
T ss_dssp HHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecC
Confidence 77888887661 478899899889999999999 899999999999999998663
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=165.20 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=97.7
Q ss_pred cccccCCc-eecCC-CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCH
Q 018808 174 LTSHSRDF-VISSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 244 (350)
Q Consensus 174 ~~~~~p~f-~~~~~-g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~ 244 (350)
.+..+|+| +.+.+ |+.+++++++||+|||+|||+|||+|+.++|.|+++++++++++ ++|++|++| ++.
T Consensus 22 ~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~~~~~e~d~~ 99 (208)
T 2f8a_A 22 SMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKN 99 (208)
T ss_dssp CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCH
T ss_pred hcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCcccccCCCCH
Confidence 35678999 78999 99999999999999999999999999999999999999999888 999999997 256
Q ss_pred HHHHHhhc------CCCCccccCCchh----------HHHHHHHc-------------------------CCCCccEEEE
Q 018808 245 ESFKRDLG------SMPWLALPFKDKS----------REKLARYF-------------------------ELSTLPTLVI 283 (350)
Q Consensus 245 ~~~~~~~~------~~~~~~~~~~~~~----------~~~~~~~~-------------------------~v~~~P~~~l 283 (350)
++.++|++ ++. ++||++.+. -..+...+ ++...|++||
T Consensus 100 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tfl 178 (208)
T 2f8a_A 100 EEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 178 (208)
T ss_dssp HHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEE
T ss_pred HHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEE
Confidence 78888886 443 566655321 11122222 2566799999
Q ss_pred ECCCCCEEeccchh
Q 018808 284 IGPDGKTLHSNVAE 297 (350)
Q Consensus 284 id~~G~i~~~~~~~ 297 (350)
||++|+|+.++.|.
T Consensus 179 ID~~G~i~~~~~g~ 192 (208)
T 2f8a_A 179 VGPDGVPLRRYSRR 192 (208)
T ss_dssp ECTTSCEEEEECTT
T ss_pred EcCCCcEEEEeCCC
Confidence 99999999998773
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-22 Score=155.36 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=106.9
Q ss_pred ccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 175 TSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
+.++|+| +.+.+|+.+++++++||+++|+||++||++|+.+++.|.+++++++ + +.++.|++|++.+.++++..+
T Consensus 2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~ 77 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--E--VTFVGVAGLDQVPAMQEFVNK 77 (136)
T ss_dssp CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--C--eEEEEEeCCCCHHHHHHHHHH
Confidence 4568999 7899999999999999999999999999999999999999999987 4 999999999999999999998
Q ss_pred CCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 254 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++..+++...+...++.+.|++.++|+++++|++|+++ +..|
T Consensus 78 ~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g 119 (136)
T 1zzo_A 78 YPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRG 119 (136)
T ss_dssp TTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEES
T ss_pred cCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-EEec
Confidence 87447888778888899999999999999999999999 7666
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=168.46 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=109.0
Q ss_pred hcccccCCc-ee-cCCCceeeccccCCC-EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------C
Q 018808 173 VLTSHSRDF-VI-SSDGRKISVSDLEGK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 242 (350)
Q Consensus 173 ~~~~~~p~f-~~-~~~g~~v~l~~~~gk-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~ 242 (350)
.+|..+|+| +. +.+|+.+++++++|| ++||+||++||++|+.++|.|+++++++++++ +.+++|++| +
T Consensus 19 ~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~~~~~~~d 96 (196)
T 2ywi_A 19 PLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSNDAEQYPED 96 (196)
T ss_dssp CTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSCTTTCGGG
T ss_pred CcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccc
Confidence 467889999 78 999999999999998 59999999999999999999999999999877 999999997 5
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
+.+.+++|++++. +++++..|...++.+.|++.++|+++|||++|++++++.
T Consensus 97 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 148 (196)
T 2ywi_A 97 SPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQ 148 (196)
T ss_dssp SHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEEC
T ss_pred CHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccc
Confidence 7888899988776 578888888888999999999999999999999998854
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-22 Score=167.90 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=107.0
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||+++|+|| ++||++|..+++.|+++++++ ++ ++|++|+.| +.+..++|
T Consensus 53 ~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D-~~~~~~~~ 127 (200)
T 3zrd_A 53 QIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSD-LPFAQSRF 127 (200)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESS-CHHHHTTC
T ss_pred CCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECC-CHHHHHHH
Confidence 468899999 889999999999999999999999 679999999999999999999 45 999999998 67788888
Q ss_pred hcCCCCc-cccCCchh-HHHHHHHcCCC---------CccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWL-ALPFKDKS-REKLARYFELS---------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~-~~~~~~~~-~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+++. + +||++.|. +.++.+.||+. ..|++||||++|+|++++.+.
T Consensus 128 ~~~~~-~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~ 184 (200)
T 3zrd_A 128 CGAEG-LSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVN 184 (200)
T ss_dssp TTTTT-CTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred HHHcC-CCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecC
Confidence 88776 5 88888888 88999999986 369999999999999998763
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=159.10 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=108.3
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC--CCCHHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL--DDEEESFK 248 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~--d~~~~~~~ 248 (350)
-..|.++|+| +.+.+|+.+++++++ |++||+||++||++|+.+++.|.++++++ + +.+++|++ +++.+.++
T Consensus 5 l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~~ 78 (154)
T 3ia1_A 5 VKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVVL 78 (154)
T ss_dssp CCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHHH
T ss_pred CCCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHHH
Confidence 3568899999 889999999999999 99999999999999999999999999999 3 88999999 57899999
Q ss_pred HhhcCCCCccccCCch---hHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 249 RDLGSMPWLALPFKDK---SREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++.+. +++++..+ ...++.+.|++.++|+++|||++|+++.+..|
T Consensus 79 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 128 (154)
T 3ia1_A 79 EYMKTYP-RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAG 128 (154)
T ss_dssp HHHTTCT-TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEES
T ss_pred HHHHHcC-CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcC
Confidence 9999887 57887776 78899999999999999999999999999887
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-22 Score=163.32 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=104.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|..+|+| +.+.+|+.+++++++||++||+||+ +||++|+.++|.|+++++++ ++ +++++|+.| +.+..++|
T Consensus 17 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~--v~vv~is~d-~~~~~~~~ 91 (163)
T 1psq_A 17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DN--TVVLTVSMD-LPFAQKRW 91 (163)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESS-CHHHHHHH
T ss_pred CCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--cEEEEEECC-CHHHHHHH
Confidence 467889999 7899999999999999999999995 99999999999999999998 45 999999998 56677788
Q ss_pred hcCCCCc-cccCCch-hHHHHHHHcCCC----C--ccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWL-ALPFKDK-SREKLARYFELS----T--LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~-~~~~~~~-~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~~~ 297 (350)
.++++ + ++|++.| ...++.+.||+. + .|++||||++|+|++++.|.
T Consensus 92 ~~~~~-~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~ 145 (163)
T 1psq_A 92 CGAEG-LDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVD 145 (163)
T ss_dssp HHHHT-CTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECS
T ss_pred HHhcC-CCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecC
Confidence 87665 5 7888888 678899999987 3 49999999999999998774
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=165.79 Aligned_cols=122 Identities=11% Similarity=0.130 Sum_probs=108.3
Q ss_pred hcccccCCc-eecCC-------------C--ceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEE
Q 018808 173 VLTSHSRDF-VISSD-------------G--RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEI 235 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~-------------g--~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 235 (350)
.+|..+|+| +.+.+ | +.+++++++||++||+|| ++||++|+.++|.|.++++++++++ ++|
T Consensus 5 ~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~v 82 (195)
T 2bmx_A 5 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQI 82 (195)
T ss_dssp CTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEE
T ss_pred CCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--CEE
Confidence 468899999 77776 7 899999999999999999 9999999999999999999999876 999
Q ss_pred EEEeCCCCHHHHHHhhcCC---CCccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccchh
Q 018808 236 VLISLDDEEESFKRDLGSM---PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 236 v~v~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|++|. .+..++|.+.+ ..++++++.|...++.+.|++. ++|+++|||++|+|+.++.|.
T Consensus 83 v~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~ 151 (195)
T 2bmx_A 83 LGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATA 151 (195)
T ss_dssp EEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEEC
T ss_pred EEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecC
Confidence 9999984 67778887766 1367888888888999999999 999999999999999998774
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=164.68 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=107.8
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CC
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DE 243 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~ 243 (350)
-.+|..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ +.+++|++| ++
T Consensus 7 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~ 83 (188)
T 2cvb_A 7 LPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDA 83 (188)
T ss_dssp CCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGS
T ss_pred CCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccC
Confidence 3568899999 789999999999999999999999999999999999999999999865 999999996 57
Q ss_pred HHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEec
Q 018808 244 EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 293 (350)
.+.+++|++++. ++++++.|...++.+.|++.++|+++|||++|+++.+
T Consensus 84 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 84 PEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 788889988776 5788888888899999999999999999999999988
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=170.71 Aligned_cols=124 Identities=13% Similarity=0.187 Sum_probs=108.3
Q ss_pred hhhcccccCCc-ee---cCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH
Q 018808 171 RSVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 171 ~~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 245 (350)
...+|.++|+| +. +.+|+.+++++++||++||+||+ +||++|+.++|.|++++++|++++ ++|++|++| +.+
T Consensus 47 ~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D-~~~ 123 (240)
T 3qpm_A 47 KAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVD-SQF 123 (240)
T ss_dssp SCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESS-CHH
T ss_pred cCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECC-CHH
Confidence 34689999999 54 44577999999999999999999 999999999999999999999888 999999998 456
Q ss_pred HHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
...+|++.. ..++||++.|.+.++++.||+. .+|++||||++|+|+++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~ 187 (240)
T 3qpm_A 124 THLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMND 187 (240)
T ss_dssp HHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecC
Confidence 667777654 2478999999989999999997 689999999999999997653
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-22 Score=167.14 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=109.4
Q ss_pred hhcccccCCc-eecC--CC--ceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH
Q 018808 172 SVLTSHSRDF-VISS--DG--RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~--~g--~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 245 (350)
..+|.++|+| +.+. +| +.+++++++||++||+|| ++||++|+.+++.|+++++++++++ ++|++|++| +.+
T Consensus 6 ~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~D-~~~ 82 (202)
T 1uul_A 6 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMD-SEY 82 (202)
T ss_dssp CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESS-CHH
T ss_pred ccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHH
Confidence 3578899999 6665 78 899999999999999999 9999999999999999999999877 999999998 566
Q ss_pred HHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
..++|.+.+ ..+++|++.|...++.+.|++. ++|++||||++|+|+++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~ 146 (202)
T 1uul_A 83 SHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVND 146 (202)
T ss_dssp HHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCC
Confidence 778887765 1478888888888999999999 999999999999999998764
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-22 Score=162.25 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=97.7
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~ 244 (350)
..|..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ +++++|++|+ +.
T Consensus 6 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~ 83 (169)
T 2v1m_A 6 KSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQFGGQEPWAE 83 (169)
T ss_dssp -CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred cCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCccCCCCCCCH
Confidence 467889999 8899999999999999999999999999999999999999999999887 9999999973 56
Q ss_pred HHHHHhh-cCCCCccccCCc--hhHHH----HHH-----HcC-----CCCccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDL-GSMPWLALPFKD--KSREK----LAR-----YFE-----LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~~~--~~~~~----~~~-----~~~-----v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++++|+ +++. +++|+.. |.... +.+ .+| +..+|+++|||++|+++.++.|.
T Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~ 152 (169)
T 2v1m_A 84 AEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPT 152 (169)
T ss_dssp HHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTT
T ss_pred HHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCC
Confidence 7888883 5543 4555442 22211 111 125 55679999999999999998773
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-22 Score=162.66 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=105.1
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|..+|+| +.+.+|+.+++++++||++||+|| ++||++|..++|.|+++++++ ++ ++|++|+.| +.+..++|
T Consensus 18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d-~~~~~~~~ 92 (165)
T 1q98_A 18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISAD-LPFAQARF 92 (165)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESS-CHHHHTTC
T ss_pred CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCC-CHHHHHHH
Confidence 467889999 789999999999999999999999 899999999999999999999 45 999999997 56778888
Q ss_pred hcCCCCccccCCchh-HHHHHHHcCCCC---------ccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKS-REKLARYFELST---------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~~ 296 (350)
.+++...++|++.|. ..++.+.||+.. .|++||||++|+|++++.+
T Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~ 148 (165)
T 1q98_A 93 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLV 148 (165)
T ss_dssp TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred HHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeC
Confidence 887762268888886 688999999853 5999999999999999875
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-22 Score=158.52 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=108.2
Q ss_pred cccccCCc-e--ecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-----CHH
Q 018808 174 LTSHSRDF-V--ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-----EEE 245 (350)
Q Consensus 174 ~~~~~p~f-~--~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~ 245 (350)
+|.++|+| + .+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++++ +.+++|++|. +.+
T Consensus 3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~ 79 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG 79 (148)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHH
Confidence 57889999 5 57899999999999999999999999999999999999999999865 8999999985 788
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 246 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+++++..+++ +++|+..+...++.+.|++.++|+++++|++|+++.+..|
T Consensus 80 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 129 (148)
T 2b5x_A 80 KIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAG 129 (148)
T ss_dssp HHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEES
T ss_pred HHHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecC
Confidence 8999998776 5788877877889999999999999999999999998877
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-22 Score=166.35 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=109.0
Q ss_pred hcccccCCc-eecC--CCc---eeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 173 VLTSHSRDF-VISS--DGR---KISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~--~g~---~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
.+|.++|+| +.+. +|+ .++++++ +||++||+|| ++||++|+.++|.|+++++++++++ +++++|++| +.
T Consensus 2 ~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d-~~ 78 (198)
T 1zof_A 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSID-SE 78 (198)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESS-CH
T ss_pred CCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECC-CH
Confidence 357889999 7787 898 9999999 9999999999 9999999999999999999999877 999999998 46
Q ss_pred HHHHHhhcCC------CCccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSM------PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~ 297 (350)
+..++|.+.. ..+++|+..|...++.+.|++. ++|+++|||++|+|+.++.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~ 142 (198)
T 1zof_A 79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVIND 142 (198)
T ss_dssp HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEES
T ss_pred HHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecC
Confidence 7778888762 3367888888888999999999 999999999999999998773
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=155.06 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=104.4
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCC
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 255 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 255 (350)
++|+| +.+.+|+.+++++++||+++|+||++||++|+.+++.|++++++++ + +.+++|++|++.+.++++..+++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~ 78 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSKYN 78 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHHHHHcC
Confidence 57899 7899999999999999999999999999999999999999999997 4 99999999999999999998776
Q ss_pred CccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 256 WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
++++...+...++.+.|++.++|+++++|++|+++ +..
T Consensus 79 -~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~ 116 (136)
T 1lu4_A 79 -LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FVN 116 (136)
T ss_dssp -CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EEC
T ss_pred -CCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EEE
Confidence 47888888888999999999999999999999999 666
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=166.66 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=109.1
Q ss_pred hhcccccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 172 SVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 172 ~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
..+|.++|+| +. +.+|+.+++++++||++||+|| ++|||+|+.+++.|+++++++++++ ++|++|++| +.+.
T Consensus 27 l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D-~~~~ 103 (220)
T 1zye_A 27 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVD-SHFS 103 (220)
T ss_dssp CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHH
T ss_pred ccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECC-CHHH
Confidence 4678999999 54 4678999999999999999999 9999999999999999999999877 999999999 5667
Q ss_pred HHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|.+.+ ..++||++.|...++.+.||+. .+|++||||++|+|+++..+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~ 166 (220)
T 1zye_A 104 HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVND 166 (220)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecC
Confidence 77777765 1478888888888999999998 999999999999999998764
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-22 Score=164.14 Aligned_cols=119 Identities=15% Similarity=0.201 Sum_probs=90.0
Q ss_pred ccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHH
Q 018808 175 TSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEES 246 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~ 246 (350)
++.+|+| +.+.+|+.+++++++||++||+||++||++|+ ++|.|+++++++++++ ++|++|++| ++.++
T Consensus 9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~d~~~~ 85 (171)
T 3cmi_A 9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCNQFGHQEPGSDEE 85 (171)
T ss_dssp -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEECSCC---------
T ss_pred hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECcccCCCCCCCHHH
Confidence 4578999 88999999999999999999999999999999 9999999999999887 999999986 46677
Q ss_pred HHHhh-cCCCCccccCCchhH--H--------H-HHHHcCCCCcc------EEEEECCCCCEEeccchh
Q 018808 247 FKRDL-GSMPWLALPFKDKSR--E--------K-LARYFELSTLP------TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~-~~~~~~~~~~~~~~~--~--------~-~~~~~~v~~~P------~~~lid~~G~i~~~~~~~ 297 (350)
+++|+ +++. +++|++.+.+ . . ..+.|++.++| ++||||++|+++.+..|.
T Consensus 86 ~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~ 153 (171)
T 3cmi_A 86 IAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSL 153 (171)
T ss_dssp ---------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTT
T ss_pred HHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCC
Confidence 88888 6554 5666654311 1 1 12468999999 999999999999998773
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=154.90 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=104.6
Q ss_pred hhcCccCCcee-ccCCceeecC--CCCCc-EEEEEecCCChh--hhhhhHHHHHHHHHh-ccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLD--SLKGK-IGLYFSASWCGP--CQRFTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~--~~~gk-~~v~F~~~~C~~--C~~~~~~l~~l~~~~-~~~~~~~~v~i~~d~~~~~~ 86 (350)
-+|+++|+|++ +.+|++++++ +++|| ++|+||++||++ |+.++|.|.+++++| +++ ++.+++|++|.+.+.+
T Consensus 6 ~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~-~~~~v~v~~d~~~~~~ 84 (150)
T 3fw2_A 6 EIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLDVDKQQW 84 (150)
T ss_dssp STTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS-SEEEEEEECCSCHHHH
T ss_pred cCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC-CeEEEEEEcCCCHHHH
Confidence 46999999988 6899999999 99999 999999999999 999999999999999 665 4999999999999999
Q ss_pred HhHHhcCCCcccccCCh-hhHHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 87 KGYFSKMPWLAVPFSDS-ETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
+++.+.++.....+.+. +....+++.|++.++|+++|+|++|+++++.
T Consensus 85 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 85 KDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 99999876543333333 2245899999999999999999999999863
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=161.38 Aligned_cols=122 Identities=15% Similarity=0.243 Sum_probs=99.0
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~ 244 (350)
..|..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ ++|++|++| ++.
T Consensus 7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~ 84 (170)
T 2p5q_A 7 KNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQFGEEEPGTN 84 (170)
T ss_dssp ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCH
T ss_pred CCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCCCCCCCCCCH
Confidence 467889999 8899999999999999999999999999999999999999999999887 999999997 467
Q ss_pred HHHHHhhc-CCCCccccCC--chhHHH----HH-----HHcCC--CCcc---EEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLG-SMPWLALPFK--DKSREK----LA-----RYFEL--STLP---TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~~--~~~~~~----~~-----~~~~v--~~~P---~~~lid~~G~i~~~~~~~ 297 (350)
+.+++|++ .+. +++|+. .|.... +. +.+++ .++| +++|||++|+++.++.|.
T Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~ 153 (170)
T 2p5q_A 85 DQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPT 153 (170)
T ss_dssp HHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTT
T ss_pred HHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCC
Confidence 88888887 444 456655 232221 22 22466 6788 999999999999998773
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-22 Score=163.95 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=100.8
Q ss_pred hhhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC------
Q 018808 170 LRSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD------ 242 (350)
Q Consensus 170 ~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~------ 242 (350)
.+...+..+|+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|+++++++++++ +.|++|++|.
T Consensus 10 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~ 87 (180)
T 3kij_A 10 FLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEP 87 (180)
T ss_dssp CCCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCC
T ss_pred hhcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCC
Confidence 355678899999 8999999999999999999999999999999999999999999999887 9999999874
Q ss_pred -CHHHHHHhhcC-CCCccccCCc-----hhH-HHHHHHc--CCCCccE----EEEECCCCCEEeccchh
Q 018808 243 -EEESFKRDLGS-MPWLALPFKD-----KSR-EKLARYF--ELSTLPT----LVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 -~~~~~~~~~~~-~~~~~~~~~~-----~~~-~~~~~~~--~v~~~P~----~~lid~~G~i~~~~~~~ 297 (350)
+.+++++|++. +. +++|+.. +.. ..+.+.+ .+.++|+ +||||++|+|+.++.|.
T Consensus 88 d~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~ 155 (180)
T 3kij_A 88 RPSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE 155 (180)
T ss_dssp SCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTT
T ss_pred CCHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCC
Confidence 88889999887 54 5555532 111 1111111 1236788 99999999999998774
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=159.93 Aligned_cols=122 Identities=21% Similarity=0.252 Sum_probs=103.4
Q ss_pred cccccC-Cc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCCCcEEEEEEeCC--CCHHHHH
Q 018808 174 LTSHSR-DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD--DEEESFK 248 (350)
Q Consensus 174 ~~~~~p-~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d--~~~~~~~ 248 (350)
+|.++| +| +.+.+|+.+++++++||++||+||++||+ +|..+++.|+++++++...+.++++++|++| ++.+.++
T Consensus 3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~ 82 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK 82 (170)
T ss_dssp TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH
T ss_pred CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH
Confidence 578999 99 88999999999999999999999999998 6999999999999999865556999999998 5788899
Q ss_pred HhhcCCCCcccc-------CCchhHHHHHHHcCC---------CCccEEEEECCCCCEEeccch
Q 018808 249 RDLGSMPWLALP-------FKDKSREKLARYFEL---------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~v---------~~~P~~~lid~~G~i~~~~~~ 296 (350)
+|.++++ ..++ ...+...++++.||+ ...|++||||++|+|+..+.|
T Consensus 83 ~~~~~~~-~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g 145 (170)
T 3me7_A 83 RFQKEYG-IDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYG 145 (170)
T ss_dssp HHHHHTT-CCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEES
T ss_pred HHHHHcC-CCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeC
Confidence 9988764 2222 123456788998774 457899999999999988766
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=163.49 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=96.4
Q ss_pred hcccccCCc-eecCC-CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CC
Q 018808 173 VLTSHSRDF-VISSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DE 243 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~-g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~ 243 (350)
.....+|+| +.+.+ |+.+++++++||+|||+|||+||++|+ ++|.|++++++|+++| ++||+|++| ++
T Consensus 30 ~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~~ 106 (215)
T 2i3y_A 30 DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPGD 106 (215)
T ss_dssp CCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSC
T ss_pred cccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCCC
Confidence 345678999 78999 999999999999999999999999999 9999999999999888 999999986 25
Q ss_pred HHHHHHhhc------CCCCccccCCchhH----------HHHHHH-------cC--------------CCCccEEEEECC
Q 018808 244 EESFKRDLG------SMPWLALPFKDKSR----------EKLARY-------FE--------------LSTLPTLVIIGP 286 (350)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~~~~~~~----------~~~~~~-------~~--------------v~~~P~~~lid~ 286 (350)
.++.++|++ ++. ++||++.+.+ ..+... ++ +...|++||||+
T Consensus 107 ~~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~ 185 (215)
T 2i3y_A 107 NKEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP 185 (215)
T ss_dssp HHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECT
T ss_pred HHHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECC
Confidence 677888887 554 6777654311 112222 11 233489999999
Q ss_pred CCCEEeccchh
Q 018808 287 DGKTLHSNVAE 297 (350)
Q Consensus 287 ~G~i~~~~~~~ 297 (350)
+|+|+.++.+.
T Consensus 186 ~G~vv~~~~g~ 196 (215)
T 2i3y_A 186 DGIPVMRWSHR 196 (215)
T ss_dssp TSCEEEEECTT
T ss_pred CCeEEEEeCCC
Confidence 99999998763
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-23 Score=169.94 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=108.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHH-HHHHHh-cCCCcEEEEEEeCCCCHHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE-VYEKLK-GKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~-~~~~~~-~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.+|..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++ ..+ +.+++|++|++.+.+++
T Consensus 8 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~ 85 (159)
T 2ls5_A 8 RIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNAD--FALIGIDRDEPLEKVLA 85 (159)
Confidence 467889999 7899999999999999999999999999999999999998 998887 555 99999999987777888
Q ss_pred hhcCCCCccccCCchhHHHHHHHcC--CCCccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFE--LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.+++. +++|++.|...++.+.|+ +.++|+++|||++|+++.+..|
T Consensus 86 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g 133 (159)
T 2ls5_A 86 FAKSTG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRL 133 (159)
Confidence 888776 588999999999999999 4669999999999999998876
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-22 Score=166.27 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=98.5
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~ 244 (350)
.+|.++|+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|+++++++++++ ++|++|++|+ +.
T Consensus 24 ~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~ 101 (181)
T 2p31_A 24 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQFGQQEPDSN 101 (181)
T ss_dssp ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred CcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcCCCCCCCCCH
Confidence 467889999 7899999999999999999999999999999999999999999999887 9999999974 67
Q ss_pred HHHHHhhcC-CCCccccCCc--hhHHHH---HHHcCCCCcc-------EEEEECCCCCEEeccch
Q 018808 245 ESFKRDLGS-MPWLALPFKD--KSREKL---ARYFELSTLP-------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 245 ~~~~~~~~~-~~~~~~~~~~--~~~~~~---~~~~~v~~~P-------~~~lid~~G~i~~~~~~ 296 (350)
+++++|+++ +. +++|+.. +..... .-.|++..+| ++||||++|+|+.++.|
T Consensus 102 ~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g 165 (181)
T 2p31_A 102 KEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDP 165 (181)
T ss_dssp HHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECT
T ss_pred HHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCC
Confidence 888888876 54 5666653 221111 1134566778 99999999999999876
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=161.35 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=119.8
Q ss_pred CCCc-EEEEE----ecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 36 LKGK-IGLYF----SASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 36 ~~gk-~~v~F----~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
+.+. +++.| |++||++|+.+.|.+.++++.+.+.+++.++.|+++... .++
T Consensus 19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~------------------------~l~ 74 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK------------------------EET 74 (229)
T ss_dssp CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCH------------------------HHH
T ss_pred ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccH------------------------HHH
Confidence 3444 44555 488999999999999999988854336999999887664 799
Q ss_pred hhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCcee
Q 018808 111 ELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v 190 (350)
+.|+|.++|++++++ +|....+ ..|. .....+..+........ .. .. ..+...+
T Consensus 75 ~~~~v~~~Ptl~~~~-~~~~~~~-------~~G~----~~~~~l~~~~~~~~~~~--~~--------~~----~l~~~~~ 128 (229)
T 2ywm_A 75 EKYGVDRVPTIVIEG-DKDYGIR-------YIGL----PAGLEFTTLINGIFHVS--QR--------KP----QLSEKTL 128 (229)
T ss_dssp HHTTCCBSSEEEEES-SSCCCEE-------EESC----CCTTHHHHHHHHHHHHH--TT--------CC----SCCHHHH
T ss_pred HHcCCCcCcEEEEEC-CCcccce-------ecCC----ccHHHHHHHHHHHHhcc--CC--------cc----CCCHHHH
Confidence 999999999999995 3332111 1111 12233333332211110 00 00 0111111
Q ss_pred e-ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 191 S-VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 191 ~-l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
. +....+++++++||++||++|+.+.|.+++++.++. + +.++.|+++.. .++
T Consensus 129 ~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~--v~~~~vd~~~~-----------------------~~l 181 (229)
T 2ywm_A 129 ELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--Y--ITSKVIDASEN-----------------------QDL 181 (229)
T ss_dssp HHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEEGGGC-----------------------HHH
T ss_pred HHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--C--eEEEEEECCCC-----------------------HHH
Confidence 0 112345677999999999999999999999998873 2 89999987743 558
Q ss_pred HHHcCCCCccEEEEECCCCCEEeccch
Q 018808 270 ARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+++|+|.++|++++ +|+ +.+..|
T Consensus 182 ~~~~~v~~~Pt~~~---~G~-~~~~~G 204 (229)
T 2ywm_A 182 AEQFQVVGVPKIVI---NKG-VAEFVG 204 (229)
T ss_dssp HHHTTCCSSSEEEE---GGG-TEEEES
T ss_pred HHHcCCcccCEEEE---CCE-EEEeeC
Confidence 99999999999998 777 344445
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=155.71 Aligned_cols=117 Identities=20% Similarity=0.313 Sum_probs=100.9
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcC--CCcEEEEEEeCC---CCHHHHHHhh
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGK--GESFEIVLISLD---DEEESFKRDL 251 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~--~~~~~vv~v~~d---~~~~~~~~~~ 251 (350)
|+| +.+.+|+.+++++++||++||+||++||++ |+.++|.|+++++++++. ..++++++|++| ++.+.+++|.
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 889 789999999999999999999999999998 999999999999999752 123999999998 4688899999
Q ss_pred cCCCCccccCCc---hhHHHHHHHcCCCCcc---------------EEEEECCCCCEEeccch
Q 018808 252 GSMPWLALPFKD---KSREKLARYFELSTLP---------------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 252 ~~~~~~~~~~~~---~~~~~~~~~~~v~~~P---------------~~~lid~~G~i~~~~~~ 296 (350)
+++. +.++.+. +...++.+.||+...| +++|||++|+++.++.|
T Consensus 87 ~~~~-~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 148 (171)
T 2rli_A 87 QDFH-PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGR 148 (171)
T ss_dssp HTTC-TTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEES
T ss_pred HHcC-CCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECC
Confidence 8775 4555544 3456899999999888 99999999999998876
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-22 Score=163.75 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=105.4
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||+++|+|| ++||++|..++|.|++++++ ++ +++++|+.| +.+..++|
T Consensus 21 ~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~--~~vv~is~d-~~~~~~~~ 94 (166)
T 3p7x_A 21 NEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EE--GIVLTISAD-LPFAQKRW 94 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TT--SEEEEEESS-CHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CC--CEEEEEECC-CHHHHHHH
Confidence 468899999 889999999999999999999999 78999999999999999877 44 999999998 67788888
Q ss_pred hcCCCCccccCCchh-HHHHHHHcCCCC------ccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKS-REKLARYFELST------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~ 297 (350)
.+++...+||++.|. +.++.+.||+.. .|++||||++|+|++++.+.
T Consensus 95 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~ 148 (166)
T 3p7x_A 95 CASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVS 148 (166)
T ss_dssp HHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECS
T ss_pred HHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcC
Confidence 887763278888888 789999999975 89999999999999987653
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=158.52 Aligned_cols=128 Identities=20% Similarity=0.296 Sum_probs=101.3
Q ss_pred chhhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCCCcEEEEEEeCC---CC
Q 018808 169 SLRSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DE 243 (350)
Q Consensus 169 ~~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d---~~ 243 (350)
.++..++.++|+| +.+.+|+.+++++++||++||+||++||| +|..+++.|.++++.+++++.++.+|+|++| ++
T Consensus 3 a~~~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt 82 (170)
T 4hde_A 3 ALRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK 82 (170)
T ss_dssp CCCSCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred ccccCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc
Confidence 3556788999999 89999999999999999999999999998 8999999999999999887777999999998 57
Q ss_pred HHHHHHhhcCCC-----CccccCCc--hhHHHHHHHcC----------CCCccEEEEECCCCCEEeccch
Q 018808 244 EESFKRDLGSMP-----WLALPFKD--KSREKLARYFE----------LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 ~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~----------v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.+++|.+.+. |..++... +........|+ +.+.|++||||++|+|+..+.|
T Consensus 83 p~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g 152 (170)
T 4hde_A 83 PENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSG 152 (170)
T ss_dssp HHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEES
T ss_pred HHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECC
Confidence 888999988653 21122111 11122223343 3446899999999999988766
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=155.02 Aligned_cols=119 Identities=25% Similarity=0.405 Sum_probs=102.9
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.++++++++++ +.++.|++|.+.+.++++.+
T Consensus 4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~d~~~~~~~~~~~ 82 (152)
T 2lrn_A 4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG-FTIYGVSTDRREEDWKKAIE 82 (152)
T ss_dssp CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT-EEEEEEECCSCHHHHHHHHH
T ss_pred cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC-eEEEEEEccCCHHHHHHHHH
Confidence 36899999988 689999999999999 9999999999999999999999999998764 99999999998899999988
Q ss_pred cCCCcccccCChh-hHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSE-TRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+.....+.+.. ....+++.|++.++|+++++|++|+++++
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 83 EDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAK 125 (152)
T ss_dssp HHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred HhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEe
Confidence 7654322222221 14689999999999999999999999985
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=169.11 Aligned_cols=124 Identities=13% Similarity=0.205 Sum_probs=108.6
Q ss_pred hhhcccccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH
Q 018808 171 RSVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 171 ~~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 245 (350)
...+|.++|+| +. +.+|+.+++++++||++||+|| ++||++|..+++.|++++++|++++ ++||+|++| +.+
T Consensus 61 ~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D-~~~ 137 (254)
T 3tjj_A 61 KAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVD-SQF 137 (254)
T ss_dssp CCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESS-CHH
T ss_pred ccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCC-CHH
Confidence 44679999999 54 4578899999999999999999 9999999999999999999999888 999999998 566
Q ss_pred HHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
...+|++.. ..++||++.|...++++.||+. .+|++||||++|+|+++..+.
T Consensus 138 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~ 201 (254)
T 3tjj_A 138 THLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLND 201 (254)
T ss_dssp HHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecC
Confidence 677777654 2478999999989999999995 589999999999999997763
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=163.32 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=99.4
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~ 244 (350)
.+|..+|+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|+++++++++++ +++++|++|. +.
T Consensus 24 ~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~~~~~~~~~~ 101 (185)
T 2gs3_A 24 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSN 101 (185)
T ss_dssp GGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCH
T ss_pred cCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcccCCCCCCCH
Confidence 467889999 7899999999999999999999999999999999999999999999887 9999999873 56
Q ss_pred HHHHHhhcCCCCccccCCc--hhHH----HHHHHc-------C-----CCCccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSMPWLALPFKD--KSRE----KLARYF-------E-----LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~-------~-----v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++++++++++. +++|+.. |... .+.+.+ | +..+|++||||++|+++.++.|.
T Consensus 102 ~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~ 171 (185)
T 2gs3_A 102 EEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPM 171 (185)
T ss_dssp HHHHHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTT
T ss_pred HHHHHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCC
Confidence 78888887665 4566553 2211 122221 4 34479999999999999998773
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=161.44 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=106.1
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||+++|+||++| |++|+.++|.|+++++++ .+ +++++|+.| +.+..++|
T Consensus 19 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~--~~vv~is~d-~~~~~~~~ 93 (167)
T 2jsy_A 19 KVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GD--VNVYTISAD-LPFAQARW 93 (167)
T ss_dssp CTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SS--CEEEEEECS-SGGGTSCC
T ss_pred CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CC--CEEEEEECC-CHHHHHHH
Confidence 467889999 789999999999999999999999999 999999999999999999 44 999999998 45667778
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCCCC------ccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDK-SREKLARYFELST------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~ 297 (350)
.++++..++|+..| ...++.+.|++.. .|+++|||++|+|++++.+.
T Consensus 94 ~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~ 147 (167)
T 2jsy_A 94 CGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVS 147 (167)
T ss_dssp GGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECS
T ss_pred HHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecC
Confidence 77776437888888 7788999999976 49999999999999998763
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=162.08 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=107.5
Q ss_pred hhhhcccccCCc-ee-cCCCceeeccc-cCCCEE-EEEEeccCCccCh-hhHHHHHHHHHHHhcCCCcEEEEE-EeCCCC
Q 018808 170 LRSVLTSHSRDF-VI-SSDGRKISVSD-LEGKTI-GLYFSMSSYKASA-EFTPRLVEVYEKLKGKGESFEIVL-ISLDDE 243 (350)
Q Consensus 170 ~~~~~~~~~p~f-~~-~~~g~~v~l~~-~~gk~v-lv~f~~~~C~~C~-~~~~~l~~~~~~~~~~~~~~~vv~-v~~d~~ 243 (350)
....+|.++|+| +. +.+|+.+++++ ++||++ |++||++|||+|. .++|.|++++++|+++| +++|+ |+.| +
T Consensus 13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D-~ 89 (173)
T 3mng_A 13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVN-D 89 (173)
T ss_dssp CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-C
T ss_pred CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCC-C
Confidence 455789999999 77 89999999999 699855 5566799999999 59999999999999988 99997 9988 6
Q ss_pred HHHHHHhhcCCCCc-cccCCchhHHHHHHHcCCC-------------CccEEEEECCCCCEEeccchhh
Q 018808 244 EESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-------------TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-------------~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+..++|.++.... +||++.|.+.++++.||+. ..|++|||| +|+|++.+.+..
T Consensus 90 ~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~ 157 (173)
T 3mng_A 90 AFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPD 157 (173)
T ss_dssp HHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTT
T ss_pred HHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCC
Confidence 77788888877632 4999999999999999985 459999999 999999988743
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=161.56 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=94.6
Q ss_pred cccccCCc-eecCC-CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCH
Q 018808 174 LTSHSRDF-VISSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 244 (350)
Q Consensus 174 ~~~~~p~f-~~~~~-g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~ 244 (350)
....+|+| +.+.+ |+.+++++++||+|||+|||+|||+| .++|.|++++++|+++| ++||+|++| ++.
T Consensus 13 ~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~~ 89 (207)
T 2r37_A 13 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGEN 89 (207)
T ss_dssp --CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSCH
T ss_pred ccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCCH
Confidence 34578999 78999 99999999999999999999999999 79999999999999888 999999976 256
Q ss_pred HHHHHhhc------CCCCccccCCchhH----------HHHHHHc-------C--------------CCCccEEEEECCC
Q 018808 245 ESFKRDLG------SMPWLALPFKDKSR----------EKLARYF-------E--------------LSTLPTLVIIGPD 287 (350)
Q Consensus 245 ~~~~~~~~------~~~~~~~~~~~~~~----------~~~~~~~-------~--------------v~~~P~~~lid~~ 287 (350)
++.++|++ ++. ++||++.+.+ ..+.... + +...|++||||++
T Consensus 90 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~ 168 (207)
T 2r37_A 90 SEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPD 168 (207)
T ss_dssp HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTT
T ss_pred HHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCC
Confidence 78888887 554 6777654211 1122221 1 2334899999999
Q ss_pred CCEEeccchh
Q 018808 288 GKTLHSNVAE 297 (350)
Q Consensus 288 G~i~~~~~~~ 297 (350)
|+|+.++.+.
T Consensus 169 G~i~~~~~g~ 178 (207)
T 2r37_A 169 GIPIMRWHHR 178 (207)
T ss_dssp SCEEEEECTT
T ss_pred CcEEEEECCC
Confidence 9999998763
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=161.54 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=101.1
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||++||+||++| |++|+.++|.|++++++ .+ ++|++|++| +.+..++|
T Consensus 19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~--v~vv~Is~D-~~~~~~~~ 92 (175)
T 1xvq_A 19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKD-LPFAQKRF 92 (175)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESS-CHHHHTTC
T ss_pred CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cC--CEEEEEECC-CHHHHHHH
Confidence 468899999 889999999999999999999999999 99999999999999988 34 999999997 56667788
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCc---------cEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTL---------PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~ 296 (350)
.++++..+++++.|...++.+.|++... |++||||++|+|++++.+
T Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g 147 (175)
T 1xvq_A 93 CGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELV 147 (175)
T ss_dssp C------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEEC
T ss_pred HHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEEC
Confidence 8776633788888877889999999877 999999999999999874
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=164.56 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=100.3
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 245 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~ 245 (350)
.+..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ ++|++|++|+ +.+
T Consensus 24 ~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~ 101 (190)
T 2vup_A 24 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQFGGQEPGNEE 101 (190)
T ss_dssp CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSTTCCCSCHH
T ss_pred CCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCccCCCCCCCHH
Confidence 46689999 8899999999999999999999999999999999999999999999887 9999999983 778
Q ss_pred HHHHhh-cCCCCccccCCc--hhHHH----H-----HHHcCCCCcc------EEEEECCCCCEEeccch
Q 018808 246 SFKRDL-GSMPWLALPFKD--KSREK----L-----ARYFELSTLP------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~--~~~~~----~-----~~~~~v~~~P------~~~lid~~G~i~~~~~~ 296 (350)
++++|+ +++. +++|++. |.... + .+.|++.++| ++||||++|+++.+..|
T Consensus 102 ~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g 169 (190)
T 2vup_A 102 EIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSP 169 (190)
T ss_dssp HHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECT
T ss_pred HHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECC
Confidence 888888 5544 4566553 22211 1 1346888898 99999999999999876
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=162.71 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=102.0
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------C
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 242 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~ 242 (350)
...+|..+|+| +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ ++|++|++| +
T Consensus 20 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~ 97 (183)
T 2obi_A 20 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPG 97 (183)
T ss_dssp CGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCS
T ss_pred CCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECCCCCCCCCC
Confidence 34578899999 8899999999999999999999999999999999999999999999887 999999997 3
Q ss_pred CHHHHHHhhcCCCCccccCCc--hhHH----HHHHHc-------C-----CCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLGSMPWLALPFKD--KSRE----KLARYF-------E-----LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~-------~-----v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+++++|.+++. +++|+.. |... .+.+.+ + +..+|++||||++|+|+.++.|.
T Consensus 98 ~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~ 169 (183)
T 2obi_A 98 SNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPM 169 (183)
T ss_dssp CHHHHHHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCC
Confidence 6788999988765 5566553 2222 122222 4 44579999999999999998773
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=160.05 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=106.6
Q ss_pred hcccccCCc-ee-cCCCceeecccc-CCCEEEEEEe-ccCCccChh-hHHHHHHHHHHHhcCCCcE-EEEEEeCCCCHHH
Q 018808 173 VLTSHSRDF-VI-SSDGRKISVSDL-EGKTIGLYFS-MSSYKASAE-FTPRLVEVYEKLKGKGESF-EIVLISLDDEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~-~~~g~~v~l~~~-~gk~vlv~f~-~~~C~~C~~-~~~~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~ 246 (350)
.+|.++|+| +. +.+|+.++++++ +||++||+|| ++|||+|+. ++|.|+++++++++++ + +|++|+.| +.+.
T Consensus 4 ~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d-~~~~ 80 (167)
T 2wfc_A 4 KEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVN-DSFV 80 (167)
T ss_dssp CTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESS-CHHH
T ss_pred CCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHHH
Confidence 468899999 78 999999999998 9998888875 999999999 9999999999999888 9 99999998 6777
Q ss_pred HHHhhcCCCCcc--ccCCchhHHHHHHHcCCCCc-----------cEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSMPWLA--LPFKDKSREKLARYFELSTL-----------PTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~-----------P~~~lid~~G~i~~~~~~~ 297 (350)
.++|.+++. ++ ||++.|.+.++++.||+... |++||| ++|+|+++..+.
T Consensus 81 ~~~~~~~~~-~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~ 142 (167)
T 2wfc_A 81 MDAWGKAHG-ADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEP 142 (167)
T ss_dssp HHHHHHHTT-CTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECT
T ss_pred HHHHHHhcC-CCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecC
Confidence 888888776 45 89999999999999998653 999999 999999987663
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-21 Score=153.64 Aligned_cols=120 Identities=23% Similarity=0.403 Sum_probs=102.6
Q ss_pred hhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 12 QSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
....|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|++++ +.+++|++|...+.++++
T Consensus 8 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~-~~vv~i~~d~~~~~~~~~ 86 (152)
T 2lrt_A 8 DKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEIYQISLDGDEHFWKTS 86 (152)
T ss_dssp SSSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEECSCCHHHHHHH
T ss_pred hhccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC-eEEEEEEccCCHHHHHHH
Confidence 4456899999988 689999999999999 9999999999999999999999999998874 999999999998888888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
....+|..+.- .......+.+.|++.++|+++|+|++|+++++
T Consensus 87 ~~~~~~~~~~d-~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 87 ADNLPWVCVRD-ANGAYSSYISLYNVTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp HTTCSSEEEEC-SSGGGCHHHHHHTCCSCSEEEEEETTTEEEEE
T ss_pred HhCCCceEEEC-CCCcchHHHHHcCcccCceEEEECCCCeEEEe
Confidence 87766543321 11222258899999999999999999999985
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-22 Score=160.93 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=106.7
Q ss_pred hhcccccCCc-eecCCCceeeccccCCC--EEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGK--TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk--~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
..+|..+|+| +.+.+|+.+++++++|| ++||+|| ++|||+|+.++|.|+++++++++++ +|++|++| +.+..
T Consensus 7 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d-~~~~~ 82 (159)
T 2a4v_A 7 LEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSAD-SVTSQ 82 (159)
T ss_dssp CCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESC-CHHHH
T ss_pred CCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCC-CHHHH
Confidence 3568899999 78999999999999886 8999987 9999999999999999999998764 89999998 67778
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCCCCcc------EEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMPWLALPFKDKSREKLARYFELSTLP------TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P------~~~lid~~G~i~~~~~~~ 297 (350)
++|.++++ +++|++.|.+.++.+.||+...| ++||| ++|+|++++.|.
T Consensus 83 ~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 83 KKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp HHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESC
T ss_pred HHHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccC
Confidence 88888765 57888888888999999999888 89999 999999998763
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=158.66 Aligned_cols=173 Identities=15% Similarity=0.189 Sum_probs=118.6
Q ss_pred EEEEEecCC--ChhhhhhhHHHHHHHHHhcc-CCC--EEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 40 IGLYFSASW--CGPCQRFTPILAEVYNELSR-QGD--FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 40 ~~v~F~~~~--C~~C~~~~~~l~~l~~~~~~-~~~--~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
++|.||++| |++|+.+.+.+.++.+.+.. +++ +.++.++++... .++..|+
T Consensus 28 v~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~------------------------~~~~~~g 83 (243)
T 2hls_A 28 VEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS------------------------DKFSEFK 83 (243)
T ss_dssp EEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH------------------------HHHHHTT
T ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH------------------------HHHHhcC
Confidence 999999999 99999999999999887532 222 888888876554 6899999
Q ss_pred CCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCcee-ecc
Q 018808 115 VMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI-SVS 193 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v-~l~ 193 (350)
|.++|++.++ +|...+. |.. ....+..+........ +. .+.+ +.... .+.
T Consensus 84 v~~~Pt~~i~--~g~~~~~---------G~~----~~~~l~~fv~~~l~~~---------~~-~~~l----~~~~~~~~~ 134 (243)
T 2hls_A 84 VERVPTVAFL--GGEVRWT---------GIP----AGEEIRALVEVIMRLS---------ED-ESGL----EDATKEALK 134 (243)
T ss_dssp CCSSSEEEET--TTTEEEE---------SCC----CTTHHHHHHHHHHHHH---------TT-CCCC----CHHHHHHHH
T ss_pred CCcCCEEEEE--CCceeEc---------CCC----cHHHHHHHHHHHHhcc---------CC-CCCC----CHHHHHHHH
Confidence 9999999998 3422221 111 2233333332211100 00 0000 00000 123
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
++.++++++.||++|||+|+.+.|.+++++.++...+ .++.+..|+++.. .+++++
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~ 191 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYEN-----------------------PDIADK 191 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTC-----------------------HHHHHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccC-----------------------HHHHHH
Confidence 4678899999999999999999999999999984211 1388888887643 457889
Q ss_pred cCCCCccEEEEECCCCCEE
Q 018808 273 FELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~ 291 (350)
|+|.++|++++ +|+++
T Consensus 192 ~~V~~vPt~~i---~G~~~ 207 (243)
T 2hls_A 192 YGVMSVPSIAI---NGYLV 207 (243)
T ss_dssp TTCCSSSEEEE---TTEEE
T ss_pred cCCeeeCeEEE---CCEEE
Confidence 99999999988 78876
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=152.29 Aligned_cols=119 Identities=22% Similarity=0.384 Sum_probs=104.4
Q ss_pred hhcCccCCcee-ccCCceeecC--CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHh-ccCCCEEEEEEECCCCHHHHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~--~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
-+|+++|+|++ +.+|+.++++ +++|| ++|+||++||++|+.+.|.|.++++++ +++ ++.++.|++|.+.+.+++
T Consensus 6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~v~~d~~~~~~~~ 84 (148)
T 3fkf_A 6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK-NFAMLGISLDIDREAWET 84 (148)
T ss_dssp CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT-TEEEEEEECCSCHHHHHH
T ss_pred cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC-CeEEEEEECCCCHHHHHH
Confidence 46999999988 6899999999 99999 999999999999999999999999999 665 499999999999999999
Q ss_pred HHhcCCCcccccCChh-hHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVPFSDSE-TRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+.++.....+.+.. ....+++.|++.++|+++++|++|+++++
T Consensus 85 ~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (148)
T 3fkf_A 85 AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILAR 130 (148)
T ss_dssp HHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEe
Confidence 9998876443344332 14589999999999999999999999985
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=159.49 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=107.4
Q ss_pred hcccccCCc-ee--cCCC--ceeeccc-cCCCEEEEEEe-ccCCccCh-hhHHHHHHHHHHHhcCCCcEE-EEEEeCCCC
Q 018808 173 VLTSHSRDF-VI--SSDG--RKISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESFE-IVLISLDDE 243 (350)
Q Consensus 173 ~~~~~~p~f-~~--~~~g--~~v~l~~-~~gk~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~~~~~-vv~v~~d~~ 243 (350)
.+|..+|+| +. +.+| +.+++++ ++||++||+|| ++|||+|. .++|.|+++++++++++ ++ |++|+.| +
T Consensus 5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d-~ 81 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVN-D 81 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESS-C
T ss_pred CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECC-C
Confidence 468899999 53 8899 9999999 89999999999 89999999 99999999999999887 99 9999998 6
Q ss_pred HHHHHHhhcCCCCc-cccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccchh
Q 018808 244 EESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+..++|.+++..- +||++.|.+.++++.||+. ..|++|||| +|+|++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~ 146 (162)
T 1tp9_A 82 PFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG 146 (162)
T ss_dssp HHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence 77888888877622 6899999889999999986 289999999 99999998763
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-23 Score=163.68 Aligned_cols=122 Identities=25% Similarity=0.520 Sum_probs=107.2
Q ss_pred ccCCc-eecCCCceeeccc-cCCC-EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 177 HSRDF-VISSDGRKISVSD-LEGK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~-~~gk-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
.+|+| +.+.+|+.+++++ ++|| +++|+||++||++|+.++|.|+++++++++.+.++.+++|++|++.+.+++++++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~ 82 (143)
T 2lus_A 3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMME 82 (143)
Confidence 46888 7899999999999 9999 9999999999999999999999999999643334999999999888889999886
Q ss_pred C--CCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 254 M--PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 254 ~--~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
+ +|..+++..+...++.+.|++.++|++++||++|+++.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 129 (143)
T 2lus_A 83 SHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGE 129 (143)
Confidence 6 56667777777788999999999999999999999999876543
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=153.49 Aligned_cols=119 Identities=23% Similarity=0.371 Sum_probs=104.0
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.++++++++++ +.++.|+++.+.+.++++.+
T Consensus 6 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~v~v~~d~~~~~~~~~~~ 84 (148)
T 3hcz_A 6 LLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG-IQVYAANIERKDEEWLKFIR 84 (148)
T ss_dssp CTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT-EEEEEEECCSSSHHHHHHHH
T ss_pred CCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC-EEEEEEEecCCHHHHHHHHH
Confidence 46999999988 689999999999999 9999999999999999999999999998874 99999999988889999999
Q ss_pred cCCCcccc-cCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++..++ ..+.+....+++.|++.++|+++++|++|+++++
T Consensus 85 ~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 127 (148)
T 3hcz_A 85 SKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAK 127 (148)
T ss_dssp HHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred HcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence 88765333 3333332338999999999999999999999885
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=159.93 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=103.6
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||++||+|| ++|||+|+.+++.|+++++++ ++ +++++|+.| +.+..++|
T Consensus 22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~--v~vv~Is~d-~~~~~~~~ 96 (171)
T 2yzh_A 22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EG--VDVTVVSMD-LPFAQKRF 96 (171)
T ss_dssp CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESS-CHHHHHHH
T ss_pred CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CC--ceEEEEeCC-CHHHHHHH
Confidence 467889999 789999999999999999999999 899999999999999999998 44 999999998 56778888
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCCC---------CccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDK-SREKLARYFELS---------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 296 (350)
.++++.-++|++.| ...++ +.||+. ..|++||||++|+|++++.+
T Consensus 97 ~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~ 151 (171)
T 2yzh_A 97 CESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLV 151 (171)
T ss_dssp HHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred HHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeC
Confidence 88776227888888 67788 999985 26999999999999999875
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=149.03 Aligned_cols=117 Identities=29% Similarity=0.509 Sum_probs=103.6
Q ss_pred hhcCccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 14 LLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 14 ~~g~~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
-+|+++|+|.+..+|+.+++++++|| ++|+||++||++|+.+.+.|.++++++++++ +.++.|+++.+.+.++++...
T Consensus 4 ~~G~~~P~f~l~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~v~v~~d~~~~~~~~~~~~ 82 (152)
T 3gl3_A 4 DKGDKAPDFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG-FQVVAVNLDAKTGDAMKFLAQ 82 (152)
T ss_dssp CTTSBCCCCEEEBSSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT-EEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCcCCceEeeCCCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC-eEEEEEECCCCHHHHHHHHHH
Confidence 36999999988449999999999999 9999999999999999999999999999875 999999999999999999998
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++......+. ...+++.|++.++|+++|+|++|+++++
T Consensus 83 ~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (152)
T 3gl3_A 83 VPAEFTVAFDP--KGQTPRLYGVKGMPTSFLIDRNGKVLLQ 121 (152)
T ss_dssp SCCCSEEEECT--TCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred cCCCCceeECC--cchhHHHcCCCCCCeEEEECCCCCEEEE
Confidence 87644334333 3479999999999999999999999875
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=157.03 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=101.7
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-----CCHHHHHHhhcCCCC
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESFKRDLGSMPW 256 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~ 256 (350)
+.+.+|+.+++++++||++||+||++||++|+.++|.|++++++++..+ +.+++|++| ++.+++.+++..+.+
T Consensus 23 l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~ 100 (164)
T 2h30_A 23 MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLNY 100 (164)
T ss_dssp CEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred cCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence 6788999999999999999999999999999999999999999998877 999999985 466788888887765
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
..+++..+...++++.|++.++|+++|||++|+++.+..|
T Consensus 101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g 140 (164)
T 2h30_A 101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKG 140 (164)
T ss_dssp TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEES
T ss_pred CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcC
Confidence 4477777878899999999999999999999999998877
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=157.45 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=101.1
Q ss_pred hhccccc--CCc-eecCCCceeeccccCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcC-CCcEEEEEEeCC---CC
Q 018808 172 SVLTSHS--RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGK-GESFEIVLISLD---DE 243 (350)
Q Consensus 172 ~~~~~~~--p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~-~~~~~vv~v~~d---~~ 243 (350)
..+|.++ |+| +.+.+|+.+++++++||++||+||++||++ |+.++|.|+++++++.++ +.++++++|++| ++
T Consensus 13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~ 92 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDS 92 (200)
T ss_dssp ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCC
T ss_pred hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCC
Confidence 3456665 999 789999999999999999999999999997 999999999999999854 223999999998 37
Q ss_pred HHHHHHhhcCCC--CccccCCchhHHHHHHHcCCC-Ccc---------------EEEEECCCCCEEeccch
Q 018808 244 EESFKRDLGSMP--WLALPFKDKSREKLARYFELS-TLP---------------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~-~~P---------------~~~lid~~G~i~~~~~~ 296 (350)
.+.+++|.+.++ |..++...+...++++.||+. ..| ++||||++|+|+.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g 163 (200)
T 2b7k_A 93 PAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGR 163 (200)
T ss_dssp HHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECT
T ss_pred HHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCC
Confidence 888999998764 444445556678899999987 344 78999999999998766
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-21 Score=154.58 Aligned_cols=118 Identities=16% Similarity=0.261 Sum_probs=99.5
Q ss_pred hcCccCCceecc---CCceeecCCCCCc-EEEEEecCCChhhhhh-hHHHHHHHHHhccCCCEEEEEEECC------CCH
Q 018808 15 LSSSARDFLIRS---NGDQVKLDSLKGK-IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDFEVIFVSGD------EDD 83 (350)
Q Consensus 15 ~g~~~p~f~~~~---~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~-~~~l~~l~~~~~~~~~~~~v~i~~d------~~~ 83 (350)
.|+++|+|++.. +|+.+++++++|| ++|+||++||++|+.+ +|.|.+++++|++++ +.+++|+++ ++.
T Consensus 2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~-v~~v~v~~~~~~~~~~~~ 80 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK-VAVLGLHTVFEHHEAMTP 80 (158)
T ss_dssp CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT-EEEEEEECCCSCGGGSCH
T ss_pred CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC-EEEEEEEecccccccCCH
Confidence 488999998843 8899999999999 9999999999999996 999999999998764 999999984 578
Q ss_pred HHHHhHHhcCCCcccccCChhhHH---HHHhhcCCCCcceEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMPWLAVPFSDSETRD---KLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.++++.+.++.......+.+... .+++.|++.++|+++|+|++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 81 ISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp HHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred HHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 889999998875433233322211 68999999999999999999999875
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=149.93 Aligned_cols=115 Identities=25% Similarity=0.299 Sum_probs=101.5
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc--EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
+|+++|+|++ +.+|+.+++++++|| ++|+|| ++||++|+.++|.|.+++++|++++ +.+++|+.| +.+.+++|.
T Consensus 4 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~vs~d-~~~~~~~~~ 81 (161)
T 3drn_A 4 VGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD-VVVIGVSSD-DINSHKRFK 81 (161)
T ss_dssp TTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC-EEEEEEESC-CHHHHHHHH
T ss_pred CCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC-CEEEEEeCC-CHHHHHHHH
Confidence 6999999988 689999999999999 999999 9999999999999999999999875 999999997 578899999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCC----cceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMG----IPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G~v~~~ 133 (350)
+.+++....+.| ....+++.|++.+ +|+++|+|++|++++.
T Consensus 82 ~~~~~~~~~~~d--~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 82 EKYKLPFILVSD--PDKKIRELYGAKGFILPARITFVIDKKGIIRHI 126 (161)
T ss_dssp HHTTCCSEEEEC--TTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred HHhCCCceEEEC--CcHHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence 988765333333 3458999999999 9999999999999875
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-21 Score=174.02 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=111.0
Q ss_pred hhcccccCCce------ecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC----
Q 018808 172 SVLTSHSRDFV------ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD---- 241 (350)
Q Consensus 172 ~~~~~~~p~f~------~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d---- 241 (350)
..+|.++|+|. .+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ +.|++|++|
T Consensus 51 l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~~~~ 128 (352)
T 2hyx_A 51 LESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAF 128 (352)
T ss_dssp CCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSGG
T ss_pred cCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCcccc
Confidence 45688899995 378999999999999999999999999999999999999999999877 999999986
Q ss_pred -CCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 242 -DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++.+.+++|++++. +.+|+..|...++.+.|++.++|+++|||++|+|+.+..|.
T Consensus 129 ~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~ 184 (352)
T 2hyx_A 129 EKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGE 184 (352)
T ss_dssp GGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEEESB
T ss_pred cCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEcCC
Confidence 57888999998776 67888888888999999999999999999999999998773
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-21 Score=164.14 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=105.6
Q ss_pred hcccccCCc-eecCCCceeeccccCCC-EEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk-~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.+|..+|+| +.+.+| .+++++++|| ++||+|| ++|||+|..+++.|++++++|++++ ++||+||+|. .+..++
T Consensus 4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~-~~~~~~ 79 (233)
T 2v2g_A 4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDN-VADHKE 79 (233)
T ss_dssp CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHH
T ss_pred CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCC-HHHHHH
Confidence 478899999 788999 8999999997 9999998 9999999999999999999999888 9999999984 555566
Q ss_pred hhc------CCC-CccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccchh
Q 018808 250 DLG------SMP-WLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 250 ~~~------~~~-~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.+ ... .++||++.|...++++.||+. .+|++||||++|+|+....+.
T Consensus 80 ~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~ 146 (233)
T 2v2g_A 80 WSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYP 146 (233)
T ss_dssp HHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecC
Confidence 665 342 478999999989999999985 589999999999999988653
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-21 Score=161.70 Aligned_cols=123 Identities=11% Similarity=0.164 Sum_probs=106.2
Q ss_pred hhhcccccCCc-eecC--CC-ceeeccc-cCCC-EEEEEEeccCCccChh-hHHHHHHHHHHHhcCCCcEE-EEEEeCCC
Q 018808 171 RSVLTSHSRDF-VISS--DG-RKISVSD-LEGK-TIGLYFSMSSYKASAE-FTPRLVEVYEKLKGKGESFE-IVLISLDD 242 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~--~g-~~v~l~~-~~gk-~vlv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~~~~~-vv~v~~d~ 242 (350)
.-.+|.++|+| +.+. +| +.+++++ ++|| +||++||++|||+|.. ++|.|++++++|+++| ++ |++|+.|
T Consensus 25 ~l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d- 101 (184)
T 3uma_A 25 TIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVN- 101 (184)
T ss_dssp CCCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-
T ss_pred cCCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECC-
Confidence 34679999999 7777 89 9999999 8998 5666778999999999 7999999999999988 98 9999998
Q ss_pred CHHHHHHhhcCCCCc-cccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+..++|.+++... +||++.|.+.++++.||+. ..|++|||| +|+|++.+.+.
T Consensus 102 ~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~ 167 (184)
T 3uma_A 102 DLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEE 167 (184)
T ss_dssp CHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECS
T ss_pred CHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeC
Confidence 567778888876632 3999999999999999985 358899996 99999999874
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-21 Score=156.42 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=104.2
Q ss_pred hhhcccccCCc-eecC--CCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 171 RSVLTSHSRDF-VISS--DGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~--~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
...+|..+|+| +.+. +|+.++++++ +||++||+||++|||+|+.++|.|++++++ + +.+++|++|++.+.
T Consensus 21 ~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~~~~ 94 (168)
T 2b1k_A 21 SALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQK 94 (168)
T ss_dssp CTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCCHHH
T ss_pred ccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCChHH
Confidence 34678999999 7888 8999999885 899999999999999999999999998765 4 89999999999999
Q ss_pred HHHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++|.++++ +.++ ...+...++.+.|++.++|++++||++|+++.++.|.
T Consensus 95 ~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~ 145 (168)
T 2b1k_A 95 AISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGD 145 (168)
T ss_dssp HHHHHHHHC-CCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESC
T ss_pred HHHHHHHcC-CCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCC
Confidence 999988765 4455 3456667899999999999999999999999988773
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=150.73 Aligned_cols=116 Identities=27% Similarity=0.541 Sum_probs=101.8
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++++++ ++.++.|+++.+.+.++++.+.
T Consensus 2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~ 80 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKS 80 (151)
T ss_dssp CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHH
T ss_pred CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHH
Confidence 5899999988 689999999999999 999999999999999999999999999876 4999999999888999999988
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++. +++. .+....+++.|++.++|+++++|++|+++.+
T Consensus 81 ~~~~-~~~~-~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 119 (151)
T 2f9s_A 81 YGVN-FPVV-LDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119 (151)
T ss_dssp HTCC-SCEE-EETTSHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred cCCC-ceEE-ECCchHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence 7653 3322 2334589999999999999999999999874
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=158.65 Aligned_cols=119 Identities=17% Similarity=0.297 Sum_probs=103.6
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~ 83 (350)
-+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|++++ +.+++|++| ++.
T Consensus 33 ~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~Vs~d~~~~~~~d~~ 111 (218)
T 3u5r_E 33 TLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG-LAVVAINSNDAQAFPEETL 111 (218)
T ss_dssp CTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT-EEEEEEECSCTTTCGGGSH
T ss_pred CCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC-cEEEEEECCcccccccCCH
Confidence 46999999988 689999999999998 9999999999999999999999999998875 999999997 678
Q ss_pred HHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCC
Q 018808 84 EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGG 135 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~ 135 (350)
+.++++.+.++.....+.| ....+++.|++..+|+++|+|++|++++++.
T Consensus 112 ~~~~~~~~~~~~~~~~l~D--~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~ 161 (218)
T 3u5r_E 112 ERVGAEVKAYGYGFPYLKD--ASQSVAKAYGAACTPDFFLYDRERRLVYHGQ 161 (218)
T ss_dssp HHHHHHHHHHTCCSCEEEC--TTCHHHHHHTCCEESEEEEECTTCBEEEEEC
T ss_pred HHHHHHHHHhCCCccEEEC--CccHHHHHcCCCCCCeEEEECCCCcEEEecc
Confidence 8899999887653333333 3358999999999999999999999998643
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-21 Score=154.49 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=103.3
Q ss_pred hhcccccCCc-eecCCC--------ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC
Q 018808 172 SVLTSHSRDF-VISSDG--------RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g--------~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~ 242 (350)
..+|..+|+| +.+.+| +.+++++++||+++|+||++||++|+.++|.|++++++ . ++.+++|++|+
T Consensus 8 ~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~--~v~~v~v~~~~ 82 (156)
T 1kng_A 8 ALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---K--RFQLVGINYKD 82 (156)
T ss_dssp ----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---T--TSEEEEEEESC
T ss_pred HHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---C--CeEEEEEECCC
Confidence 4678899999 788998 99999999999999999999999999999999988765 2 39999999999
Q ss_pred CHHHHHHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+.+++++.+++ +.++ +..+...++.+.|++.++|++++||++|+++.+..|.
T Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~g~ 137 (156)
T 1kng_A 83 AADNARRFLGRYG-NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGP 137 (156)
T ss_dssp CHHHHHHHHHHHC-CCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEESC
T ss_pred CHHHHHHHHHHcC-CCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEEeCC
Confidence 9999999988765 5566 5567777899999999999999999999999988773
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=148.24 Aligned_cols=117 Identities=28% Similarity=0.543 Sum_probs=102.8
Q ss_pred hcCccC-Ccee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSAR-DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p-~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|+++| +|++ +.+|+.+++++++|| ++|+||++||++|+.+.+.|.+++++++++ ++.++.|+++...+.++++.+
T Consensus 5 ~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~ 83 (152)
T 2lja_A 5 SGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENMVT 83 (152)
T ss_dssp TTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS-SEEEEEEECCSCHHHHHHHHH
T ss_pred cCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC-CeEEEEEEccCcHHHHHHHHH
Confidence 699999 9988 689999999999999 999999999999999999999999999876 499999999999889999988
Q ss_pred cCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..++..+++.. +....+++.|++.++|+++++|++|+++++
T Consensus 84 ~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 124 (152)
T 2lja_A 84 KDQLKGIQLHM-GTDRTFMDAYLINGIPRFILLDRDGKIISA 124 (152)
T ss_dssp HHTCCSEEEEC-SSCTHHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred hcCCCCceeec-CcchhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence 77654444332 224589999999999999999999999985
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-21 Score=156.64 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=104.7
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCC---CHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEE 245 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~---~~~ 245 (350)
...|.++|+| +.+.+| .+++++++||++||+||++||++ |+.++|.|+++++++++++ .++++++|++|. +.+
T Consensus 10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~ 88 (172)
T 2k6v_A 10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE 88 (172)
T ss_dssp EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence 3567889999 889999 99999999999999999999997 9999999999999998641 139999999983 578
Q ss_pred HHHHhhcCCCCccccCCchhH---HHHHHHcCC---------------CCccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPWLALPFKDKSR---EKLARYFEL---------------STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v---------------~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+++|.++++ .+++++.+.. .++.+.||+ .++|+++||| +|+++.++.|.
T Consensus 89 ~~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~ 156 (172)
T 2k6v_A 89 VADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPD 156 (172)
T ss_dssp HHHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCC
Confidence 8888888765 5677766665 678888875 4789999999 99999998874
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=160.85 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=102.7
Q ss_pred hcccccCCc-eecCCCceeeccccCCC--EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGK--TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk--~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.+|..+|+| +.+.+| .+++++++|| +||++||++|||+|..+++.|++++++|++++ +++|+||+|. .+..++
T Consensus 6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~-~~~~~~ 81 (224)
T 1prx_A 6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDS-VEDHLA 81 (224)
T ss_dssp CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSC-HHHHHH
T ss_pred CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHH
Confidence 468899999 788999 9999999997 57777799999999999999999999999888 9999999984 444445
Q ss_pred hhcC---C------CCccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccchh
Q 018808 250 DLGS---M------PWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 250 ~~~~---~------~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.+. . ..++||++.|.+.++++.||+. .+|++||||++|+|+....+.
T Consensus 82 ~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~ 150 (224)
T 1prx_A 82 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP 150 (224)
T ss_dssp HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECC
T ss_pred HHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecC
Confidence 5443 0 3478899999889999999984 479999999999999998753
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=152.49 Aligned_cols=121 Identities=16% Similarity=0.240 Sum_probs=100.5
Q ss_pred hhhhcCccCCcee-c-cCCceeecCCCCCc-EEEEEecCCChhhhhh-hHHHHHHHHHhccCCCEEEEEEECC------C
Q 018808 12 QSLLSSSARDFLI-R-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDFEVIFVSGD------E 81 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~-~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~-~~~l~~l~~~~~~~~~~~~v~i~~d------~ 81 (350)
++..|.++|+|.+ + .+|+.+++++++|| ++|+||++||++|+.+ +|.|.+++++|++++ +.+++|+++ +
T Consensus 2 s~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~-v~~v~v~~~~~~~~~~ 80 (160)
T 3lor_A 2 SSLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ-VQVIGLHSVFEHHDVM 80 (160)
T ss_dssp --CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT-EEEEEEECCCSCGGGS
T ss_pred cccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC-cEEEEEeccccccccC
Confidence 3457999999988 4 69999999999999 9999999999999995 999999999998874 999999984 6
Q ss_pred CHHHHHhHHhcCCCcccccCChhh----HHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 82 DDEAFKGYFSKMPWLAVPFSDSET----RDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+.++++.+.++.......+... ...+++.|++.++|+++|+|++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 81 TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred CHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 788999999988754322222221 1128999999999999999999999875
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=146.64 Aligned_cols=117 Identities=28% Similarity=0.579 Sum_probs=101.9
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC-HHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~-~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.+.|.++++++++. ++.++.|+++.+ .+.++++.
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~ 81 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKVAVEEFF 81 (154)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEEECCTTHHHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEEcCCcchHHHHHHH
Confidence 46999999988 689999999999999 999999999999999999999999999876 499999999987 77888888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+++....+. +....+++.|++.++|+++|+|++|+++++
T Consensus 82 ~~~~~~~~~~~--d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 122 (154)
T 3kcm_A 82 RKTGFTLPVLL--DADKRVGKLYGTTGVPETFVIDRHGVILKK 122 (154)
T ss_dssp HHHCCCCCEEE--CTTCHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred HHcCCCeeEEe--cCchHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence 87765432233 334579999999999999999999999874
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-21 Score=157.17 Aligned_cols=122 Identities=17% Similarity=0.228 Sum_probs=103.8
Q ss_pred hhcccccCCc-eecC----CC-----ceeecccc-CCC-EEEEEEeccCCccChhh-HHHHHHHHHHHhcCCCcEE-EEE
Q 018808 172 SVLTSHSRDF-VISS----DG-----RKISVSDL-EGK-TIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESFE-IVL 237 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~----~g-----~~v~l~~~-~gk-~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~-vv~ 237 (350)
..+|.++|+| +.+. +| +.++++++ +|| +||++||++|||+|+.+ +|.|++++++++++| ++ |++
T Consensus 7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~ 84 (171)
T 2pwj_A 7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVIC 84 (171)
T ss_dssp ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEE
T ss_pred ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEE
Confidence 4567799999 6666 57 89999996 996 77889999999999999 999999999999888 99 999
Q ss_pred EeCCCCHHHHHHhhcCCCC-ccccCCchhHHHHHHHcCCCC-----------ccEEEEECCCCCEEeccchh
Q 018808 238 ISLDDEEESFKRDLGSMPW-LALPFKDKSREKLARYFELST-----------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 238 v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~~~ 297 (350)
|+.| +.+..++|.+++.. .+||++.|.+.++++.||+.. .|++++|| +|+|++.+.+.
T Consensus 85 Is~d-~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~ 154 (171)
T 2pwj_A 85 VAIN-DPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEE 154 (171)
T ss_dssp EESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred EeCC-CHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence 9998 56678888887775 479999999999999999852 56889999 99999998874
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=147.34 Aligned_cols=117 Identities=25% Similarity=0.418 Sum_probs=101.2
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
..+|.++|+|.+ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.++++++++++ +.++.|+++.+.+.++++.
T Consensus 8 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~-v~~v~v~~d~~~~~~~~~~ 86 (165)
T 3or5_A 8 DARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG-FTFVGIAVNEQLPNVKNYM 86 (165)
T ss_dssp CCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT-EEEEEEECSCCHHHHHHHH
T ss_pred hcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHH
Confidence 356999999988 689999999999999 9999999999999999999999999998774 9999999999999999998
Q ss_pred hcCCCcccccCChhhHHHHHhhc------CCCCcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELF------KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~------~v~~~P~~~lid~~G~v~~~ 133 (350)
+.++.......+.+ .+.+.| ++.++|+++++|++|+++++
T Consensus 87 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 87 KTQGIIYPVMMATP---ELIRAFNGYIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp HHHTCCSCEEECCH---HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred HHcCCCCceEecCH---HHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence 87765333333322 677777 89999999999999999874
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=160.01 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=101.3
Q ss_pred hcccccCCc-eecC--CCceeeccccCCC--EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDF-VISS--DGRKISVSDLEGK--TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~~--~g~~v~l~~~~gk--~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
.+|..+|+| +.+. +| .+++++++|| +||++||++|||+|..+++.|++++++|++++ +++++||+|. .+..
T Consensus 4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~-~~~~ 79 (220)
T 1xcc_A 4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNS-KESH 79 (220)
T ss_dssp CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHH
T ss_pred CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCC-HHHH
Confidence 478899999 7788 88 8999999998 56666799999999999999999999999887 9999999984 4444
Q ss_pred HHhhc------CCCCccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccch
Q 018808 248 KRDLG------SMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 248 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~ 296 (350)
+++.+ ....++||++.|.+.++++.||+. .+|++||||++|+|+....+
T Consensus 80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~ 146 (220)
T 1xcc_A 80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLY 146 (220)
T ss_dssp HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEec
Confidence 44444 123478999999989999999983 47999999999999999865
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-20 Score=169.06 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=132.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC--
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-- 117 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-- 117 (350)
++|.||++||++|..+.+.|.+++++++. .+.++.++++... ...+++.||+..
T Consensus 138 ~~v~F~~~~~~~~~~~~~~~~~~A~~~~~--~i~f~~vd~~~~~----------------------~~~~~~~fgi~~~~ 193 (361)
T 3uem_A 138 HILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFIFIDSDHTD----------------------NQRILEFFGLKKEE 193 (361)
T ss_dssp EEEEECCSSSSSHHHHHHHHHHHHGGGTT--TCEEEEECTTSGG----------------------GHHHHHHTTCCTTT
T ss_pred EEEEEEeCCchhHHHHHHHHHHHHHHccC--ceEEEEecCChHH----------------------HHHHHHHcCCCccC
Confidence 78999999999999999999999999976 4788888776321 137899999987
Q ss_pred cceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCC-----ceecCCCceeec
Q 018808 118 IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD-----FVISSDGRKISV 192 (350)
Q Consensus 118 ~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~-----f~~~~~g~~v~l 192 (350)
+|++++++..+.... +.......+.+.+..+....... .........+.|. .+...+++.+..
T Consensus 194 ~P~~~~~~~~~~~~k---------y~~~~~~~~~~~l~~fi~~~l~g---~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~ 261 (361)
T 3uem_A 194 CPAVRLITLEEEMTK---------YKPESEELTAERITEFCHRFLEG---KIKPHLMSQELPEDWDKQPVKVLVGKNFED 261 (361)
T ss_dssp CSEEEEEECC--CCE---------ECCSSCCCCHHHHHHHHHHHHTT---CSCCCCBCCCCCTTTTTSSSEEECTTTHHH
T ss_pred CccEEEEEcCCcccc---------cCCCccccCHHHHHHHHHHHhcC---CCcccccCCCCCcccccCCcEEeecCchhh
Confidence 999999976433211 11111235677777776653321 1111111122221 122334443332
Q ss_pred ccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 193 SDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 193 ~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
..+ .+|+++|.||++||++|+.+.|.+.+++++++++. ++.++.|.++.+. .+
T Consensus 262 ~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~-~v~~~~vd~~~~~-------------------------~~ 315 (361)
T 3uem_A 262 VAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-NIVIAKMDSTANE-------------------------VE 315 (361)
T ss_dssp HHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCS-SEEEEEEETTTCB-------------------------CS
T ss_pred hcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCC-cEEEEEEECCccc-------------------------hh
Confidence 222 57899999999999999999999999999998752 4888888766331 45
Q ss_pred HcCCCCccEEEEECCC-CCEEeccch
Q 018808 272 YFELSTLPTLVIIGPD-GKTLHSNVA 296 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~-G~i~~~~~~ 296 (350)
.|+|.++|++++++++ |+.+.++.|
T Consensus 316 ~~~v~~~Pt~~~~~~~~~~~~~~~~G 341 (361)
T 3uem_A 316 AVKVHSFPTLKFFPASADRTVIDYNG 341 (361)
T ss_dssp SCCCCSSSEEEEECSSSSCCCEECCS
T ss_pred hcCCcccCeEEEEECCCCcceeEecC
Confidence 7899999999999555 565666655
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=155.77 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=106.2
Q ss_pred chhhhcccccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 018808 169 SLRSVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 243 (350)
Q Consensus 169 ~~~~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~ 243 (350)
.+...+|.+||+| +. +.+++.++|++++||++||+|| +.|||.|..+++.+++.+++|++.| ++|++||+| +
T Consensus 20 ~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS~D-s 96 (216)
T 3sbc_A 20 HMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFASTD-S 96 (216)
T ss_dssp --CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEESS-C
T ss_pred cchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEeecC-c
Confidence 3456789999999 43 6677899999999999999999 8899999999999999999999998 999999999 5
Q ss_pred HHHHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 244 EESFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
.....+|.... ..++||++.|.++++++.||+. ..+.+||||++|+|++....
T Consensus 97 ~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~ 161 (216)
T 3sbc_A 97 EYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIN 161 (216)
T ss_dssp HHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred hhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEc
Confidence 55555555432 2478999999999999999983 47899999999999987654
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=153.86 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=91.6
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|++||+|++ +.+|++++|++++|| ++|+|| ++||++|..++|.|.++++++++.+ +.+++|+.| +.+..++|.+
T Consensus 6 vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~-~~~v~vs~d-~~~~~~~~~~ 83 (157)
T 4g2e_A 6 IGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN-AVVLGISVD-PPFSNKAFKE 83 (157)
T ss_dssp TTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS-SEEEEEESS-CHHHHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC-ceEeeeccc-chhHHHHHHH
Confidence 5999999988 689999999999999 999998 8999999999999999999998875 999999987 4567788888
Q ss_pred cCCCcccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
.++.. +++. .|...++++.||+. ..|+++|||++|+|++.
T Consensus 84 ~~~~~-~p~l-~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~ 134 (157)
T 4g2e_A 84 HNKLN-FTIL-SDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYK 134 (157)
T ss_dssp HTTCC-SEEE-ECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEE
T ss_pred HcCCc-EEEE-EcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEE
Confidence 87653 3432 23445899999984 46889999999999875
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=145.62 Aligned_cols=120 Identities=18% Similarity=0.417 Sum_probs=99.6
Q ss_pred CchhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC---CHH
Q 018808 10 DIQSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDE 84 (350)
Q Consensus 10 ~~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~---~~~ 84 (350)
....-+|+++|+|.+ +.+|+.+++++ +|| ++|+||++||++|+.+.|.|.+++++++++ ++.++.|+++. +.+
T Consensus 6 ~~~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~ 83 (145)
T 3erw_A 6 QAEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD-SVKLVTVNLVNSEQNQQ 83 (145)
T ss_dssp ------CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS-SEEEEEEECGGGSSCHH
T ss_pred cccccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEEEccCCcCCHH
Confidence 344567999999988 68999999999 999 999999999999999999999999999866 49999999975 888
Q ss_pred HHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.++++.+.++.....+.+ ....+++.|++.++|+++++|++|+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~d--~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 84 VVEDFIKANKLTFPIVLD--SKGELMKEYHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp HHHHHHHHTTCCSCEEEC--SSSHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred HHHHHHHHcCCceeEEEc--CchhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence 999999887654332333 33489999999999999999999999874
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=148.83 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=100.6
Q ss_pred hhcCccCCce--e-ccCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 14 LLSSSARDFL--I-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~--~-~~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
.+|+++|+|+ + +.+|+++++++++|| ++|+||+ +||++|..++|.|.+++++|++++ +++++|++| +.+.+++
T Consensus 8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~-~~vv~vs~d-~~~~~~~ 85 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG-AKILGVSRD-SVKSHDN 85 (163)
T ss_dssp CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT-CEEEEEESS-CHHHHHH
T ss_pred ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC-CEEEEEeCC-CHHHHHH
Confidence 5799999999 8 689999999999999 9999998 999999999999999999999875 999999997 7778888
Q ss_pred HHhcCCCcccccCChhhHHHHHhhcCCCC------------cceEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVPFSDSETRDKLDELFKVMG------------IPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~ 133 (350)
|.+.++.....+.| ....+++.|++.. +|+++|+|++|++++.
T Consensus 86 ~~~~~~~~~~~~~d--~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 140 (163)
T 3gkn_A 86 FCAKQGFAFPLVSD--GDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQA 140 (163)
T ss_dssp HHHHHCCSSCEEEC--TTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHhCCCceEEEC--CcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEE
Confidence 88877643222333 3458999999987 9999999999999874
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=152.18 Aligned_cols=116 Identities=17% Similarity=0.292 Sum_probs=100.4
Q ss_pred hhhhcCccCCcee-ccCC--ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 12 QSLLSSSARDFLI-RSNG--DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g--~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
...+|+++|+|++ +.+| +.+++++++|| ++|+||++||++|+.++|.|.+++++ .+.+++|+++++.+.++
T Consensus 29 ~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~ 103 (176)
T 3kh7_A 29 SALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAI 103 (176)
T ss_dssp TTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHH
T ss_pred ccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHH
Confidence 3467999999988 6777 89999999999 99999999999999999999999876 38999999999999999
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++.+.+++....+. .+....+++.|++.++|+++|+|++|+++++
T Consensus 104 ~~~~~~~~~~~~~~-~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 148 (176)
T 3kh7_A 104 KWLNELHNPYLLSI-SDADGTLGLDLGVYGAPETYLIDKQGIIRHK 148 (176)
T ss_dssp HHHHHTTCCCSEEE-EETTCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred HHHHHcCCCCceEE-ECCcchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence 99999876444321 2344589999999999999999999999875
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-20 Score=157.70 Aligned_cols=117 Identities=9% Similarity=0.132 Sum_probs=102.4
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccCh-----hhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASA-----EFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~-----~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 245 (350)
.+|.++|+| +.+.+|+.+++++++||++||+||++| ||+|. .+++.|++. + .| ++|++||.| +..
T Consensus 23 ~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~D-s~~ 94 (224)
T 3keb_A 23 RKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVD-SPS 94 (224)
T ss_dssp CTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESS-CHH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECC-CHH
Confidence 568899999 789999999999999999999999998 99999 888888777 4 45 999999998 677
Q ss_pred HHHHhhcCCCCccccCCchh-HHHHHHHcCCCC---------ccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPWLALPFKDKS-REKLARYFELST---------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~~~ 297 (350)
..++|.+++...+||++.|. +.++++.||+.. .|++||||++|+|++++...
T Consensus 95 ~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~ 156 (224)
T 3keb_A 95 SLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLA 156 (224)
T ss_dssp HHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECS
T ss_pred HHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecC
Confidence 88888887764379999998 689999999864 79999999999999987653
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=151.74 Aligned_cols=115 Identities=22% Similarity=0.401 Sum_probs=102.1
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC----------
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---------- 80 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d---------- 80 (350)
.-+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++
T Consensus 11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~ 87 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGL 87 (165)
T ss_dssp HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTC
T ss_pred ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEeccccccccccc
Confidence 456999999988 789999999999999 9999999999999999999999999997 4999999999
Q ss_pred --------CCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 81 --------EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 81 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+.+.++++.+.+++..+++... ...+++.|++.++|+++|+|++|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 88 NKPGYPPPDTPEMFRKFIANYGDPSWIMVMD--DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC--CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred ccccCCCCCCHHHHHHHHHHcCCCCeeEEeC--hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78899999999887634443322 458999999999999999999999987
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=143.37 Aligned_cols=115 Identities=17% Similarity=0.308 Sum_probs=93.8
Q ss_pred CccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 17 SSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 17 ~~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
-++|+|+...+|+++++++++|| ++|+||++||++|+.+.|.|.+++++++++ ++.++.|++| +.+.++++.+.++.
T Consensus 3 ~pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d-~~~~~~~~~~~~~~ 80 (151)
T 3raz_A 3 LSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG-SVDMVGIALD-TSDNIGNFLKQTPV 80 (151)
T ss_dssp ----CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-TEEEEEEESS-CHHHHHHHHHHSCC
T ss_pred CCcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECC-ChHHHHHHHHHcCC
Confidence 35667766689999999999999 999999999999999999999999999766 4999999996 46788899888764
Q ss_pred cccccC-ChhhHHHHHhhcC--CCCcceEEEECCCCeEEec
Q 018808 96 LAVPFS-DSETRDKLDELFK--VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 96 ~~~~~~-~~~~~~~l~~~~~--v~~~P~~~lid~~G~v~~~ 133 (350)
....+. .......+++.|+ +.++|+++|+|++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 81 SYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQT 121 (151)
T ss_dssp SSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred CCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEE
Confidence 322221 2334568999999 9999999999999999875
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=172.28 Aligned_cols=79 Identities=20% Similarity=0.380 Sum_probs=63.4
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.++.+++...--.++ ++|.||++||++|+.+.|.+.++++.++.. ++.++.|+++...
T Consensus 18 ~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~~~~~-------------------- 76 (504)
T 2b5e_A 18 KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQ-------------------- 76 (504)
T ss_dssp ECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCH--------------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEEEEEECCCCH--------------------
Confidence 334444333223567 999999999999999999999999999765 4899999987664
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCe
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGK 129 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (350)
.+++.|+|.++|+++++. +|+
T Consensus 77 ----~l~~~~~v~~~Pt~~~~~-~g~ 97 (504)
T 2b5e_A 77 ----DLCMEHNIPGFPSLKIFK-NSD 97 (504)
T ss_dssp ----HHHHHTTCCSSSEEEEEE-TTC
T ss_pred ----HHHHhcCCCcCCEEEEEe-CCc
Confidence 689999999999999994 565
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=147.35 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=100.2
Q ss_pred hhhhcCccCCcee-cc--CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCE------EEEEEECCC
Q 018808 12 QSLLSSSARDFLI-RS--NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDF------EVIFVSGDE 81 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~--~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~------~~v~i~~d~ 81 (350)
..-.|.++|+|.+ +. +|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ + .++.|+++.
T Consensus 30 ~~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-~~~~~~v~~v~v~~d~ 108 (183)
T 3lwa_A 30 DEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG-NGDTPGGTVLGINVRD 108 (183)
T ss_dssp CGGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC----CCSEEEEEEECSC
T ss_pred ccccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC-CCccCCcEEEEEECCC
Confidence 3467899999988 67 9999999999999 9999999999999999999999999998874 7 999999998
Q ss_pred -CHHHHHhHHhcCCCcccccCChhhHHHHHhhc---CCCCcceEEEECCCCeEEec
Q 018808 82 -DDEAFKGYFSKMPWLAVPFSDSETRDKLDELF---KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+.++++.+.++.....+.+.+ ..+.+.| ++.++|+++|+|++|+++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 109 YSRDIAQDFVTDNGLDYPSIYDPP--FMTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp CCHHHHHHHHHHTTCCSCEEECTT--CGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHHHcCCCccEEECCc--chHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 78899999988765433333332 3566666 58999999999999999875
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-20 Score=162.06 Aligned_cols=121 Identities=10% Similarity=0.143 Sum_probs=107.1
Q ss_pred hcccccCCc-eecC-CCc--eeeccc-cCCCEEEEEEe-ccCCccCh-hhHHHHHHHHHHHhcCCCcE-EEEEEeCCCCH
Q 018808 173 VLTSHSRDF-VISS-DGR--KISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESF-EIVLISLDDEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~-~g~--~v~l~~-~~gk~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~~~~-~vv~v~~d~~~ 244 (350)
.+|.++|+| +.+. +|+ .+++++ ++||++||+|| ++|||+|+ .++|.|++++++++++| + +|++|+.| +.
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d-~~ 80 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVN-DT 80 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESS-CH
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcC-CH
Confidence 468899999 6775 777 999999 89999999999 99999999 99999999999999888 9 99999998 57
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+..++|.+++...+||++.|.++++++.||+. ..|++||| ++|+|++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~ 143 (241)
T 1nm3_A 81 FVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEP 143 (241)
T ss_dssp HHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECC
T ss_pred HHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEec
Confidence 77888888777445899999999999999985 45999999 999999998774
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-20 Score=158.98 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=102.4
Q ss_pred hcccccCCc-eecCCCceeec-ccc--CCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISV-SDL--EGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l-~~~--~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
.+|..+|+| +.+.+| .+++ +++ +||+ ||++||++||++|..+++.|++++++|++++ ++|++||+|. ....
T Consensus 6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds-~~~~ 81 (249)
T 3a2v_A 6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDS-VFSH 81 (249)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCC-HHHH
Confidence 578999999 778888 7999 999 9995 5668899999999999999999999999887 9999999984 3333
Q ss_pred HHhhc---C--CCCccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLG---S--MPWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~---~--~~~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++.+ + ...++||++.|...++++.||+. ++|++||||++|+|+....+.
T Consensus 82 ~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~ 143 (249)
T 3a2v_A 82 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYP 143 (249)
T ss_dssp HHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecC
Confidence 33333 1 11478899999999999999997 899999999999999998764
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-19 Score=143.68 Aligned_cols=116 Identities=21% Similarity=0.398 Sum_probs=97.6
Q ss_pred hhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 12 QSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
...+|+++|+|.+ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.++++++++. ++.++.|+.+.. ++++
T Consensus 14 ~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~---~~~~ 89 (158)
T 3hdc_A 14 LVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKR---FPEK 89 (158)
T ss_dssp CCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSSS---CCGG
T ss_pred ccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCHH---HHHH
Confidence 3456999999988 689999999999999 999999999999999999999999999866 499999998873 4566
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+.++.....+.+ ....+++.|++.++|+++|+|++|+++++
T Consensus 90 ~~~~~~~~~~~~d--~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 131 (158)
T 3hdc_A 90 YRRAPVSFNFLSD--ATGQVQQRYGANRLPDTFIVDRKGIIRQR 131 (158)
T ss_dssp GGGCCCSCEEEEC--TTSHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HHHcCCCceEEEC--chHHHHHHhCCCCcceEEEEcCCCCEEEE
Confidence 6666543222322 33589999999999999999999999875
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-19 Score=147.71 Aligned_cols=119 Identities=24% Similarity=0.472 Sum_probs=100.9
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC-HHHHHhH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGY 89 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~-~~~~~~~ 89 (350)
.-+|.++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++++++ ++.+++|++|.+ .+.++++
T Consensus 34 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~ 112 (186)
T 1jfu_A 34 ASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTF 112 (186)
T ss_dssp CCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHH
T ss_pred ccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC-CcEEEEEECCCCCHHHHHHH
Confidence 345899999988 689999999999999 999999999999999999999999999866 499999999864 5678888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCC----CcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~v~~~ 133 (350)
.+.++...+++. .+....+.+.|++. ++|+++|+|++|+++++
T Consensus 113 ~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 113 LKEANLTRLGYF-NDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHHTTCCTTCCE-ECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred HHHcCCCCCceE-ECCcchHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence 888876444433 23335788888885 89999999999999875
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=149.63 Aligned_cols=116 Identities=11% Similarity=0.219 Sum_probs=100.5
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~ 84 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++++++ +.++.|+++ ++.+
T Consensus 8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~ 85 (188)
T 2cvb_A 8 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPE 85 (188)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHH
T ss_pred CCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHH
Confidence 46999999988 689999999999999 999999999999999999999999999864 999999986 4677
Q ss_pred HHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.++++.+.++.....+.+ ....+++.|++.++|+++|+|++|+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~d--~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 86 KMAAFAEEHGIFFPYLLD--ETQEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHHHHHHTCCSCEEEC--SSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHHHHHhCCCceEEEC--CcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 888888877653222323 33579999999999999999999999986
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=149.30 Aligned_cols=120 Identities=21% Similarity=0.181 Sum_probs=93.4
Q ss_pred chhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------
Q 018808 11 IQSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE------- 81 (350)
Q Consensus 11 ~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~------- 81 (350)
.+...|.++|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|++++ +.+++|++|.
T Consensus 10 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~-~~vi~is~d~~~~~~~d 88 (180)
T 3kij_A 10 FLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH-FSVLAFPCNQFGESEPR 88 (180)
T ss_dssp CCCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS-EEEEEEECCCSTTCCCS
T ss_pred hhcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC-eEEEEEECCccccCCCC
Confidence 34567999999988 789999999999999 9999999999999999999999999999875 9999999874
Q ss_pred CHHHHHhHHhc-CCCcccccC-----Chhh---HHHHHhhcCCCCcce----EEEECCCCeEEec
Q 018808 82 DDEAFKGYFSK-MPWLAVPFS-----DSET---RDKLDELFKVMGIPH----LVILDENGKVLSD 133 (350)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~~~-----~~~~---~~~l~~~~~v~~~P~----~~lid~~G~v~~~ 133 (350)
+.+.++++.+. ++.....+. +... ...+... ...+|+ ++|||++|+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 89 PSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDS--SKKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp CHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHH--HTCCCSSTTCEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhc--CCCCccccceEEEECCCCCEEEE
Confidence 77888888887 553221111 1111 1111111 235787 9999999999885
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=177.88 Aligned_cols=183 Identities=11% Similarity=0.078 Sum_probs=132.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++||++|+.+.|.+.++++.+++ ++.++.++++... .+++.|++.
T Consensus 563 ~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v~ 616 (780)
T 3apo_A 563 DEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYH------------------------SFCTQENVQ 616 (780)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTTH------------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--CeEEEEEECcchH------------------------HHHHHcCCC
Confidence 35 89999999999999999999999999976 4888888876543 688999999
Q ss_pred CcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCceeec-ccc
Q 018808 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISV-SDL 195 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v~l-~~~ 195 (350)
++|+++++.+.+.... .. ..+.+ ...+.+.+..++... .+......++..+.- -.-
T Consensus 617 ~~Pti~~~~~~~~~~~----~~-~~y~g--~~~~~~~l~~fi~~~----------------~~~~v~~l~~~~~~~~~~~ 673 (780)
T 3apo_A 617 RYPEIRFYPQKSSKAY----QY-HSYNG--WNRDAYSLRSWGLGF----------------LPQASIDLTPQTFNEKVLQ 673 (780)
T ss_dssp SSSEEEEECCCSSSCC----SC-EECCC--SCCSHHHHHHHHHTT----------------SCCCSEEECHHHHHHHTTT
T ss_pred CCCeEEEEcCCCcCcc----ch-hhcCC--CCCCHHHHHHHHhhh----------------cccccccCCHHHHHHHHhc
Confidence 9999999965432000 00 00111 123455555554321 011112222222211 112
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|+++.. .+++++|+|
T Consensus 674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v 727 (780)
T 3apo_A 674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDCQAY-----------------------PQTCQKAGI 727 (780)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEECCCC-----------------------HHHHHhcCC
Confidence 4689999999999999999999999999999764 89999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 728 ~~~Pt~~~~-~~g~~~~~~~G 747 (780)
T 3apo_A 728 KAYPSVKLY-QYERAKKSIWE 747 (780)
T ss_dssp CSSSEEEEE-EEETTTTEEEE
T ss_pred CcCCEEEEE-cCCCccccccC
Confidence 999999999 89988877666
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=144.66 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=99.6
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-CCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.++++++++++ +.++.|+.+ ++.+.++++.
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~ 81 (153)
T 2l5o_A 3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN-FQVLAVAQPIDPIESVRQYV 81 (153)
T ss_dssp -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT-EEEEEEECTTSCHHHHHHHH
T ss_pred CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC-eEEEEEecCCCCHHHHHHHH
Confidence 67999999988 689999999999999 9999999999999999999999999998774 999999975 4567888888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.++.......+ ....+++.|++.++|+++++|++|+++..
T Consensus 82 ~~~~~~~~~~~d--~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 82 KDYGLPFTVMYD--ADKAVGQAFGTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp HHTTCCSEEEEC--SSCHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred HHcCCCceEEcC--chHHHHHHcCCCccCeEEEECCCCcEEEE
Confidence 887654322322 23479999999999999999999998763
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-19 Score=139.93 Aligned_cols=113 Identities=24% Similarity=0.380 Sum_probs=99.4
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
.|.++|+|.+ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++++.+.++++.+.
T Consensus 1 ~~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~ 77 (136)
T 1zzo_A 1 TVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNK 77 (136)
T ss_dssp CCCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHH
Confidence 3678999988 689999999999999 9999999999999999999999999987 4999999999999999999998
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
++...+++.. +....+++.|++.++|+++++|++|+++
T Consensus 78 ~~~~~~~~~~-d~~~~~~~~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 78 YPVKTFTQLA-DTDGSVWANFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp TTCTTSEEEE-CTTCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred cCCCceEEEE-cCCcHHHHHcCCCCCceEEEECCCCCEE
Confidence 8763444332 3345899999999999999999999987
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=142.99 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=99.2
Q ss_pred hcCccCCcee---ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-----CHHH
Q 018808 15 LSSSARDFLI---RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-----DDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~---~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-----~~~~ 85 (350)
+|+++|+|.+ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++++++ +.++.|+++. +.+.
T Consensus 3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~ 80 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGK 80 (148)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHH
T ss_pred CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC--cEEEEEEcCCCccccCHHH
Confidence 5899999976 479999999999999 999999999999999999999999999864 8999999875 6788
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++++.+.++.. +++. .+....+++.|++.++|+++++|++|+++++
T Consensus 81 ~~~~~~~~~~~-~~~~-~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 81 IKETAAEHDIT-QPIF-VDSDHALTDAFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp HHHHHHHTTCC-SCEE-ECSSCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred HHHHHHHcCCC-cceE-ECCchhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence 99999888753 3322 2233489999999999999999999999874
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=145.57 Aligned_cols=119 Identities=27% Similarity=0.295 Sum_probs=99.7
Q ss_pred hcCccC-Ccee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC-CEEEEEEECC--CCHHHHH
Q 018808 15 LSSSAR-DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD--EDDEAFK 87 (350)
Q Consensus 15 ~g~~~p-~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d--~~~~~~~ 87 (350)
+|+++| +|++ +.+|+++++++++|| ++|+||++||+ .|..+++.|.++++++++.+ ++++++|++| ++.+.++
T Consensus 3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~ 82 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK 82 (170)
T ss_dssp TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH
T ss_pred CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH
Confidence 699999 9988 689999999999999 99999999997 69999999999999997532 6999999997 5677888
Q ss_pred hHHhcCCCcc-----cccCChhhHHHHHhhcCC---------CCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLA-----VPFSDSETRDKLDELFKV---------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~v---------~~~P~~~lid~~G~v~~~ 133 (350)
+|.+.++... +...+.+....+++.||+ ...|+++|||++|+++..
T Consensus 83 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 83 RFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp HHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred HHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence 8888775322 223455677789998774 456899999999999874
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=145.25 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=97.7
Q ss_pred hcCccCCcee-ccCCc----eeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 15 LSSSARDFLI-RSNGD----QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~----~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
+|+++|+|++ +.+|+ ++++++++|| ++|+|| ++||++|+.++|.|.+++++|++++ +.+++|++|. .+..+
T Consensus 3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~vs~d~-~~~~~ 80 (187)
T 1we0_A 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG-VEVYSVSTDT-HFVHK 80 (187)
T ss_dssp TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT-EEEEEEESSC-HHHHH
T ss_pred CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC-CEEEEEECCC-HHHHH
Confidence 5899999988 67888 9999999999 999999 9999999999999999999998874 9999999976 56677
Q ss_pred hHHhcC----CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM----PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.+ ++ .+++.. +....+++.|++. ++|+++|+|++|+++++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~-d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 81 AWHENSPAVGSI-EYIMIG-DPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp HHHHSCHHHHTC-CSEEEE-CTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHhccccCC-CceEEE-CCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence 777776 33 333321 2335899999998 99999999999999985
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=145.70 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=91.0
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~ 84 (350)
.+|+++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|++|. +.+
T Consensus 6 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~d~~~~~~~~~~~ 84 (169)
T 2v1m_A 6 KSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG-LRILAFPCNQFGGQEPWAEA 84 (169)
T ss_dssp -CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSCHH
T ss_pred cCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC-eEEEEEECCccCCCCCCCHH
Confidence 46999999988 689999999999999 9999999999999999999999999998874 9999999873 467
Q ss_pred HHHhH-HhcCCCcccccC---Chhh--HHHHH-----hhcC-----CCCcceEEEECCCCeEEec
Q 018808 85 AFKGY-FSKMPWLAVPFS---DSET--RDKLD-----ELFK-----VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~---~~~~--~~~l~-----~~~~-----v~~~P~~~lid~~G~v~~~ 133 (350)
.++++ .+.++.. +++. +.+. ...+. ..++ +.++|+++|+|++|+++++
T Consensus 85 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 148 (169)
T 2v1m_A 85 EIKKFVTEKYGVQ-FDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR 148 (169)
T ss_dssp HHHHHHHHHHCCC-SEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhcCCC-CceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence 78888 4655432 2222 2111 00111 1125 5567999999999999985
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=139.29 Aligned_cols=113 Identities=28% Similarity=0.552 Sum_probs=96.8
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEE-----CCCCHHHHHhHH
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS-----GDEDDEAFKGYF 90 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~-----~d~~~~~~~~~~ 90 (350)
++|+|.+ +.+|+.+++++++|| ++|+||++||++|+.+.+.|.++++++++ ++.++.|. .+.+.+.++++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~ 78 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWY 78 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHH
Confidence 5899988 689999999999999 99999999999999999999999999644 58999994 456788899999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+++..++.. .+....+++.|++.++|+++++|++|+++++
T Consensus 79 ~~~~~~~~~~~-~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 79 KGLDYKNLPVL-VDPSGKLLETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp TTCCCTTCCEE-ECTTCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred hhcCCCCeeEE-ECcchHHHHHcCcccCCeEEEECCCCcEEEe
Confidence 98887455533 2334589999999999999999999999874
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=149.96 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=104.7
Q ss_pred hhhcccccCCce-----ecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 171 RSVLTSHSRDFV-----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 171 ~~~~~~~~p~f~-----~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
...+|.+||+|. .+.+|+.++|++++||++||+|| +.|||.|..++..+++.+++|++.| ++|++||+| +.
T Consensus 25 ~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~D-s~ 101 (219)
T 3tue_A 25 NAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSID-SE 101 (219)
T ss_dssp CCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESS-CH
T ss_pred ccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCC-ch
Confidence 356899999993 36788999999999999999999 7899999999999999999999998 999999999 44
Q ss_pred HHHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 245 ESFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 245 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
....+|..+. ..++||++.|.++++++.||+. ....+||||++|+|++....
T Consensus 102 ~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~ 165 (219)
T 3tue_A 102 YAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVN 165 (219)
T ss_dssp HHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred hhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEe
Confidence 4455554332 3478999999999999999983 24689999999999987644
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=146.29 Aligned_cols=120 Identities=19% Similarity=0.349 Sum_probs=91.1
Q ss_pred hhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CC
Q 018808 12 QSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------ED 82 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~ 82 (350)
..-+|.++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.++++++++++ +.+++|++| ++
T Consensus 5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~vs~d~~~~~~~~~ 83 (170)
T 2p5q_A 5 TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG-LEILAFPCNQFGEEEPGT 83 (170)
T ss_dssp -----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCTTTTCCCSC
T ss_pred cCCCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC-EEEEEEECCCCCCCCCCC
Confidence 3457999999988 689999999999999 9999999999999999999999999998874 999999997 36
Q ss_pred HHHHHhHHh-cCCCcccccC---Chhh--HHHHH-----hhcCC--CCcc---eEEEECCCCeEEec
Q 018808 83 DEAFKGYFS-KMPWLAVPFS---DSET--RDKLD-----ELFKV--MGIP---HLVILDENGKVLSD 133 (350)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~---~~~~--~~~l~-----~~~~v--~~~P---~~~lid~~G~v~~~ 133 (350)
.+.++++.+ .++. .+++. +.+. ...+. ..+++ ..+| +++|+|++|+++++
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 84 NDQITDFVCTRFKS-EFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp HHHHHHHHHHHTCC-CSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhcCC-CceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence 778888887 5443 23322 2111 01111 12356 6777 99999999999985
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=148.67 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=97.9
Q ss_pred hhcCccCCcee-cc--CC--ceeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHH
Q 018808 14 LLSSSARDFLI-RS--NG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~-~~--~g--~~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~ 85 (350)
.+|+++|+|++ +. +| ++++++++ +|| +||+|| ++||++|+.++|.|.+++++|++++ +++++|++|+ .+.
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~-v~vv~Is~D~-~~~ 103 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN-VELLGISVDS-VYS 103 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT-EEEEEEESSC-HHH
T ss_pred CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEeCCC-HHH
Confidence 57999999988 56 89 99999999 999 999999 9999999999999999999998774 9999999964 556
Q ss_pred HHhHHhcC----C--CcccccCChhhHHHHHhhcCC-----CCcceEEEECCCCeEEec
Q 018808 86 FKGYFSKM----P--WLAVPFSDSETRDKLDELFKV-----MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~~ 133 (350)
.++|.+.. + ...+++. .|....+++.|++ ..+|+++|||++|+|++.
T Consensus 104 ~~~~~~~~~~~~g~~~~~fp~l-~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~ 161 (221)
T 2c0d_A 104 HLAWKNMPIEKGGIGNVEFTLV-SDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQ 161 (221)
T ss_dssp HHHHHHSCGGGTCCCSCSSEEE-ECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHhhhhcCccCCceEEE-ECCchHHHHHcCCcccCCCccceEEEECCCCeEEEE
Confidence 77777766 1 2344433 2334589999999 479999999999999985
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-20 Score=149.68 Aligned_cols=115 Identities=20% Similarity=0.298 Sum_probs=97.2
Q ss_pred hcCccCCcee-ccCCceeecCCC--CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSL--KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~--~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
+|++||+|++ +.+|++++|+++ +|| ++|+|| ++|||+|..++|.|.+++++|++++ +.+++|+.| +.+..++|
T Consensus 7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~-v~vv~is~d-~~~~~~~~ 84 (164)
T 4gqc_A 7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN-AEVLAISVD-SPWCLKKF 84 (164)
T ss_dssp TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS-SEEEEEESS-CHHHHHHH
T ss_pred CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC-ceEEEecCC-CHHHHHHH
Confidence 5999999988 689999999998 899 888887 9999999999999999999998885 999999986 56778888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCC----------CcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVM----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~v~~~ 133 (350)
.+.++.. +++. .|.+.++++.||+. ..|+++|||++|+|++.
T Consensus 85 ~~~~~~~-fp~l-~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~ 136 (164)
T 4gqc_A 85 KDENRLA-FNLL-SDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK 136 (164)
T ss_dssp HHHTTCC-SEEE-ECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred HHhcCcc-ccee-ecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEE
Confidence 8887653 4432 23445899999984 46889999999999875
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=151.05 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=91.4
Q ss_pred chhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------
Q 018808 11 IQSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE------- 81 (350)
Q Consensus 11 ~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~------- 81 (350)
...-+|+++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +.+++|++|.
T Consensus 21 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~-v~vv~vs~d~~~~~e~~ 99 (181)
T 2p31_A 21 QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH-FNVLAFPCNQFGQQEPD 99 (181)
T ss_dssp ------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCS
T ss_pred CcCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEECcCCCCCCCC
Confidence 34457999999988 689999999999999 9999999999999999999999999998874 9999999874
Q ss_pred CHHHHHhHHhc-CCCcccccC-ChhhHHHH---HhhcCCCCcc-------eEEEECCCCeEEec
Q 018808 82 DDEAFKGYFSK-MPWLAVPFS-DSETRDKL---DELFKVMGIP-------HLVILDENGKVLSD 133 (350)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~l---~~~~~v~~~P-------~~~lid~~G~v~~~ 133 (350)
+.+.++++++. ++.. +++. +.+.+... .-.|++..+| +++|+|++|+++++
T Consensus 100 ~~~~~~~~~~~~~~~~-~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~ 162 (181)
T 2p31_A 100 SNKEIESFARRTYSVS-FPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGA 162 (181)
T ss_dssp CHHHHHHHHHHHHCCC-SCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred CHHHHHHHHHhhcCCC-ceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence 67788888877 5532 3322 11111111 1124566778 99999999999885
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=141.68 Aligned_cols=115 Identities=25% Similarity=0.434 Sum_probs=100.1
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC--CCCHHHHHhH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG--DEDDEAFKGY 89 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~--d~~~~~~~~~ 89 (350)
-+|+++|+|.+ +.+|+.+++++++ | ++|+||++||++|+.+.|.|.++++++ ++.++.|++ +++.+.++++
T Consensus 6 ~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~ 80 (154)
T 3ia1_A 6 KPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEY 80 (154)
T ss_dssp CSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHH
T ss_pred CCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHH
Confidence 46999999988 6899999999999 9 999999999999999999999999999 388999998 6788899999
Q ss_pred HhcCCCcccccCC-hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSD-SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~-~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+.++.....+.+ .+....+++.|++.++|+++++|++|+++.+
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 81 MKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVAL 125 (154)
T ss_dssp HTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEE
T ss_pred HHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEE
Confidence 9998763333332 1355689999999999999999999999875
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=146.86 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=90.8
Q ss_pred hhcCccCCcee-ccC-CceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCH
Q 018808 14 LLSSSARDFLI-RSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~-g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~ 83 (350)
..+.++|+|++ +.+ |+.+++++++|| +||+||++||++|+.++|.|.+++++|++++ +++++|++| ++.
T Consensus 21 ~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g-~~vv~v~~d~~~~~e~d~~ 99 (208)
T 2f8a_A 21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG-LVVLGFPCNQFGHQENAKN 99 (208)
T ss_dssp -CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTTTCSCH
T ss_pred hhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC-eEEEEEECCcccccCCCCH
Confidence 34778999988 678 999999999999 9999999999999999999999999998875 999999986 245
Q ss_pred HHHHhHHh------cCCCcccccC-Chh--------hHHHHHhhc-------------------------CCCCcceEEE
Q 018808 84 EAFKGYFS------KMPWLAVPFS-DSE--------TRDKLDELF-------------------------KVMGIPHLVI 123 (350)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~~-~~~--------~~~~l~~~~-------------------------~v~~~P~~~l 123 (350)
+.+++|.+ .++. .+++. +.+ ....+...+ ++.+.|+++|
T Consensus 100 ~~i~~f~~~~~~~~~~~~-~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tfl 178 (208)
T 2f8a_A 100 EEILNSLKYVRPGGGFEP-NFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 178 (208)
T ss_dssp HHHHHHHHHTSSCTTCCC-SSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEE
T ss_pred HHHHHHHHhccccccccc-ceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEE
Confidence 77888887 4443 23322 111 111121122 3667799999
Q ss_pred ECCCCeEEec
Q 018808 124 LDENGKVLSD 133 (350)
Q Consensus 124 id~~G~v~~~ 133 (350)
||++|+++.+
T Consensus 179 ID~~G~i~~~ 188 (208)
T 2f8a_A 179 VGPDGVPLRR 188 (208)
T ss_dssp ECTTSCEEEE
T ss_pred EcCCCcEEEE
Confidence 9999999985
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=145.89 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=97.8
Q ss_pred hhcCccCCcee-ccC-------------C--ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEE
Q 018808 14 LLSSSARDFLI-RSN-------------G--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVI 75 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~-------------g--~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v 75 (350)
.+|+++|+|++ +.+ | +++++++++|| ++|+|| ++||++|+.++|.|.+++++|+++ +++++
T Consensus 5 ~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv 83 (195)
T 2bmx_A 5 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQIL 83 (195)
T ss_dssp CTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEE
T ss_pred CCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEE
Confidence 46999999988 555 7 89999999999 999999 999999999999999999999876 49999
Q ss_pred EEECCCCHHHHHhHHhcC----CCcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 76 FVSGDEDDEAFKGYFSKM----PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 76 ~i~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
+|++|. .+..++|.+.+ ++ .+++. .+....+++.|++. .+|+++|+|++|+++++
T Consensus 84 ~Vs~d~-~~~~~~~~~~~~~~~~~-~~~~~-~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~ 147 (195)
T 2bmx_A 84 GVSIDS-EFAHFQWRAQHNDLKTL-PFPML-SDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFV 147 (195)
T ss_dssp EEESSC-HHHHHHHHHHCTTGGGC-CSCEE-ECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred EEECCC-HHHHHHHHHHhccccCC-ceeEE-eCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEE
Confidence 999975 56777887776 32 23322 12335899999999 99999999999999985
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=147.20 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=94.8
Q ss_pred hhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CC
Q 018808 12 QSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------ED 82 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~ 82 (350)
..-+|+++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|++| ++
T Consensus 20 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~e~~~ 98 (183)
T 2obi_A 20 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG-LRILAFPCNQFGKQEPGS 98 (183)
T ss_dssp CGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSC
T ss_pred CCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC-eEEEEEECCCCCCCCCCC
Confidence 3456999999988 689999999999999 9999999999999999999999999998874 999999987 36
Q ss_pred HHHHHhHHhcCCCcccccC---Chhh--HHHHHhhc-------C-----CCCcceEEEECCCCeEEec
Q 018808 83 DEAFKGYFSKMPWLAVPFS---DSET--RDKLDELF-------K-----VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~---~~~~--~~~l~~~~-------~-----v~~~P~~~lid~~G~v~~~ 133 (350)
.+.++++.+.++.. +++. +.+. ...+.+.+ + +.++|+++|+|++|+++++
T Consensus 99 ~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~ 165 (183)
T 2obi_A 99 NEEIKEFAAGYNVK-FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR 165 (183)
T ss_dssp HHHHHHHHHTTTCC-SEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHcCCC-ceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence 77889998887643 3322 2111 11122111 4 4557999999999999885
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=141.11 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=100.4
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc--EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
.-+|+++|+|++ +.+|+.+++++++|| ++|+|| ++||++|+.++|.|.+++++++++ ++.+++|++| +.+.+++
T Consensus 9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~is~d-~~~~~~~ 86 (160)
T 1xvw_A 9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVG-PPPTHKI 86 (160)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESC-CHHHHHH
T ss_pred CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CcEEEEEeCC-CHHHHHH
Confidence 457999999988 689999999999997 999998 999999999999999999999876 4999999997 5678888
Q ss_pred HHhcCCCcccccCChhhHHHHHhhcCCC----Ccc--eEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVPFSDSETRDKLDELFKVM----GIP--HLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P--~~~lid~~G~v~~~ 133 (350)
|.+.+++....+.+......+++.|++. ++| +++|+|++|+++++
T Consensus 87 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~ 137 (160)
T 1xvw_A 87 WATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA 137 (160)
T ss_dssp HHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred HHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEE
Confidence 8888776333233321245789999998 999 99999999999885
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=151.87 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=92.8
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~ 85 (350)
.+.++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|++| ++.+.
T Consensus 22 ~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~-~~vi~is~d~~~~~e~~~~~~ 100 (187)
T 3dwv_A 22 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG-FTVLAFPSNQFGGQEPGNEEE 100 (187)
T ss_dssp TCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT-CEEEEEEBCCCSSCSSSBTTH
T ss_pred CCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC-eEEEEEECcccCCCCCCCHHH
Confidence 4688999988 689999999999999 9999999999999999999999999999874 999999987 45778
Q ss_pred HHhHHhcC-CCcccccC-ChhhH----HHHH--------hhcCCCCcc---eEEEECCCCeEEec
Q 018808 86 FKGYFSKM-PWLAVPFS-DSETR----DKLD--------ELFKVMGIP---HLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~-~~~~~~~~-~~~~~----~~l~--------~~~~v~~~P---~~~lid~~G~v~~~ 133 (350)
++++.+.. +. .+++. +.+.. ..+. ..+++..+| +++|||++|+++++
T Consensus 101 ~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~ 164 (187)
T 3dwv_A 101 IKEFVCTKFKA-EFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER 164 (187)
T ss_dssp HHHSCCBCCCC-SSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHhccCC-CCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence 88888843 43 23322 11111 1111 445667788 99999999999885
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=137.54 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=96.9
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCC
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 94 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~ 94 (350)
.++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++++.+.++++.+.++
T Consensus 2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 78 (136)
T 1lu4_A 2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYN 78 (136)
T ss_dssp GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcC
Confidence 46899988 689999999999999 9999999999999999999999999997 499999999999999999998877
Q ss_pred CcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 95 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
+....+.+ ....+++.|++.++|+++++|++|+++
T Consensus 79 ~~~~~~~d--~~~~~~~~~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 79 LNFTNLND--ADGVIWARYNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp CCSEEEEC--TTSHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred CCceEEEC--CchhHHHhcCCCCCCEEEEECCCCcEE
Confidence 63332333 335899999999999999999999987
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=146.92 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=83.3
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~ 84 (350)
-.+..+|+|++ +.+|+++++++++|| ++|+||++||++|+ ++|.|.+++++|++++ +.+++|++| ++.+
T Consensus 7 ~~~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~~~d~~~ 84 (171)
T 3cmi_A 7 HHMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG-FTIIGFPCNQFGHQEPGSDE 84 (171)
T ss_dssp ---CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT-EEEEEEEECSCC--------
T ss_pred cchhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC-eEEEEEECcccCCCCCCCHH
Confidence 35788999988 689999999999999 99999999999999 9999999999998874 999999986 4556
Q ss_pred HHHhHH-hcCCCcccccCChhhHH----H-----HHhhcCCCCcc------eEEEECCCCeEEec
Q 018808 85 AFKGYF-SKMPWLAVPFSDSETRD----K-----LDELFKVMGIP------HLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~----~-----l~~~~~v~~~P------~~~lid~~G~v~~~ 133 (350)
.++++. +.++.....+.+.+.+. . ..+.|++.++| +++|+|++|+++++
T Consensus 85 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 85 EIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp ----------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred HHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 777887 66553322222222110 1 12468999999 99999999999885
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-19 Score=144.51 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=96.9
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC-CEEEEEEECC---CCHHHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d---~~~~~~ 86 (350)
-+|+++|+|++ +.+|+.+++++++|| ++|+||++||+ +|..+++.|.++++++++++ ++++++|++| ++.+.+
T Consensus 8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~ 87 (174)
T 1xzo_A 8 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL 87 (174)
T ss_dssp CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred ccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHH
Confidence 46999999988 689999999999999 99999999999 99999999999999998764 5999999998 467888
Q ss_pred HhHHhcCCCcc---cccCChh--hHHHHHh------------hcCCCCcceEEEECCCCeEEec
Q 018808 87 KGYFSKMPWLA---VPFSDSE--TRDKLDE------------LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~--~~~~l~~------------~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++|.+.++... ....+.+ ..+.+.. .|++.++|+++|||++|+++++
T Consensus 88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 99998876533 1222222 1222221 1457789999999999999875
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=143.82 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=96.7
Q ss_pred hhcCccCCcee-cc-CC--ceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLI-RS-NG--DQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~-~~-~g--~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+++|+|++ +. +| +++++++++|| ++|+||+ +||++|+.++|.|.+++++|++++ +++++|+.|+ .+..+
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~-v~vv~Is~d~-~~~~~ 79 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG-VDVYSVSTDT-HFTHK 79 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT-EEEEEEESSC-HHHHH
T ss_pred CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHHH
Confidence 36999999988 55 58 89999999999 9999995 999999999999999999998874 9999999874 56677
Q ss_pred hHHhcCC---CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMP---WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.++ ...+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 80 ~~~~~~~~~~~~~fp~l-~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~ 133 (186)
T 1n8j_A 80 AWHSSSETIAKIKYAMI-GDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHHHHCTTGGGCCSEEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHcCcccCCceeEE-ECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence 8887771 1333432 22345799999987 47999999999999985
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=146.76 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=93.3
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DD 83 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~ 83 (350)
.-+|+++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|++|. +.
T Consensus 23 ~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~-v~vv~is~d~~~~~~~~~~ 101 (185)
T 2gs3_A 23 MRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG-LRILAFPCNQFGKQEPGSN 101 (185)
T ss_dssp GGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCTTTTCCCSCH
T ss_pred ccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC-eEEEEEECcccCCCCCCCH
Confidence 457999999988 689999999999999 9999999999999999999999999998874 9999999873 46
Q ss_pred HHHHhHHhcCCCcccccC-Chhh----HHHHHhhc-------C-----CCCcceEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMPWLAVPFS-DSET----RDKLDELF-------K-----VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~----~~~l~~~~-------~-----v~~~P~~~lid~~G~v~~~ 133 (350)
+.++++.+.++.. +++. +.+. ...+.+.+ + ++++|+++|+|++|+++++
T Consensus 102 ~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~ 167 (185)
T 2gs3_A 102 EEIKEFAAGYNVK-FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR 167 (185)
T ss_dssp HHHHHHHHHTTCC-SEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred HHHHHHHHHcCCC-CeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence 7788888877643 3322 1111 11122111 4 3457999999999999885
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=145.18 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=97.5
Q ss_pred hcCccCCcee-cc--CCc---eeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHH
Q 018808 15 LSSSARDFLI-RS--NGD---QVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~-~~--~g~---~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~ 85 (350)
+|+++|+|++ +. +|+ +++++++ +|| ++|+|| ++||++|+.++|.|.+++++|++++ +.+++|+.|+ .+.
T Consensus 3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~Is~d~-~~~ 80 (198)
T 1zof_A 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG-FNVIGVSIDS-EQV 80 (198)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT-EEEEEEESSC-HHH
T ss_pred CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC-CEEEEEECCC-HHH
Confidence 6999999988 56 898 9999999 999 999999 9999999999999999999998874 9999999985 567
Q ss_pred HHhHHhc-------CCCcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 86 FKGYFSK-------MPWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
.++|.+. +++ .+++. .+....+++.|++. ++|+++|+|++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~-~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~ 138 (198)
T 1zof_A 81 HFAWKNTPVEKGGIGQV-SFPMV-ADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA 138 (198)
T ss_dssp HHHHHTSCGGGTCCCCC-SSCEE-ECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred HHHHHHhhhhcccccCc-eeEEE-ECCchHHHHHhCCcccCCcccceEEEECCCCEEEEE
Confidence 7777776 333 33332 22345899999999 99999999999999885
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=146.76 Aligned_cols=118 Identities=19% Similarity=0.333 Sum_probs=95.7
Q ss_pred hhhcCccCCceec-c-CC--ceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 13 SLLSSSARDFLIR-S-NG--DQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 13 ~~~g~~~p~f~~~-~-~g--~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
..+|+++|+|++. . ++ +++++++++|| ++|+||+ +||++|+.++|.|.+++++|++++ +++++|++|. .+..
T Consensus 40 l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~-v~vv~Is~D~-~~~~ 117 (222)
T 3ztl_A 40 LLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN-CQVIACSTDS-QYSH 117 (222)
T ss_dssp CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT-EEEEEEESSC-HHHH
T ss_pred ccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHH
Confidence 4579999999884 3 44 89999999999 9999996 999999999999999999998774 9999999975 4455
Q ss_pred HhHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KGYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
.++.+.+ ....+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l-~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~ 175 (222)
T 3ztl_A 118 LAWDNLDRKSGGLGHMKIPLL-ADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQI 175 (222)
T ss_dssp HHHHHSCGGGTSCCSCSSCEE-ECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEE
T ss_pred HHHHHHhhhhccccccceeEE-eCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEE
Confidence 5666543 12333332 12335899999998 89999999999999985
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=145.69 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=98.7
Q ss_pred hhcCccCCcee-cc--CC--ceeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHH
Q 018808 14 LLSSSARDFLI-RS--NG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~-~~--~g--~~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~ 85 (350)
.+|+++|+|++ +. +| ++++++++ +|| ++|+|| ++||++|+.++|.|.+++++|++++ +++++|++| +.+.
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~Is~D-~~~~ 99 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN-VELLGCSVD-SKYT 99 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT-EEEEEEESS-CHHH
T ss_pred cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCC-CHHH
Confidence 46999999988 55 79 89999999 999 999999 9999999999999999999998774 999999997 4566
Q ss_pred HHhHHhcCC------CcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMP------WLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
.++|.+... ...+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 100 ~~~~~~~~~~~~g~~~~~fp~l-~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~ 157 (213)
T 2i81_A 100 HLAWKKTPLAKGGIGNIKHTLL-SDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHL 157 (213)
T ss_dssp HHHHHSSCGGGTCCCSCSSEEE-ECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhhCCccCCCceEE-ECCchHHHHHhCCccccCCcccEEEEECCCCEEEEE
Confidence 777777651 2344433 23345899999999 89999999999999985
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=139.25 Aligned_cols=116 Identities=20% Similarity=0.354 Sum_probs=97.6
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChh-hhhhhHHHHHHHHHhccC---CCEEEEEEECCC---CHHHHHh
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQ---GDFEVIFVSGDE---DDEAFKG 88 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~-C~~~~~~l~~l~~~~~~~---~~~~~v~i~~d~---~~~~~~~ 88 (350)
.+|+|++ +.+|+++++++++|| ++|+||++||++ |+.++|.|.++++++++. .++.+++|++|. +.+.+++
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~ 81 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN 81 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence 4799988 689999999999999 999999999997 999999999999999762 259999999985 4677888
Q ss_pred HHhcCCCccc-ccCChhhHHHHHhhcCCCCcc---------------eEEEECCCCeEEec
Q 018808 89 YFSKMPWLAV-PFSDSETRDKLDELFKVMGIP---------------HLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~ 133 (350)
|.+.++.... ...+.+....+++.|++...| +++|+|++|+++++
T Consensus 82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 8887753211 123356667899999999999 89999999999885
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=140.24 Aligned_cols=121 Identities=23% Similarity=0.369 Sum_probs=93.1
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC-CEEEEEEECC---CCHHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDDEA 85 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d---~~~~~ 85 (350)
.-+|.++|+|++ +.+|+++++++++|| ++|+||++||+ .|...++.|.++++.+++.+ ++.+|+|++| ++.+.
T Consensus 6 ~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~ 85 (170)
T 4hde_A 6 KPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPEN 85 (170)
T ss_dssp SCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHH
T ss_pred cCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHH
Confidence 346899999988 789999999999999 99999999997 79999999999999997665 7999999998 45677
Q ss_pred HHhHHhcCC-----CcccccCChhhHHHHH-hhc----------CCCCcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMP-----WLAVPFSDSETRDKLD-ELF----------KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~-----~~~~~~~~~~~~~~l~-~~~----------~v~~~P~~~lid~~G~v~~~ 133 (350)
+++|.+.++ |..+...+.+....+. ..| .+.+.|+++|||++|+++..
T Consensus 86 l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (170)
T 4hde_A 86 LKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK 149 (170)
T ss_dssp HHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred HHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence 888887653 3222222322222222 233 33456899999999999864
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=143.53 Aligned_cols=117 Identities=23% Similarity=0.272 Sum_probs=97.8
Q ss_pred hhcCccCCcee-cc--CC--ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLI-RS--NG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~-~~--~g--~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
.+|+++|+|++ +. +| +++++++++|| ++|+|| ++||++|..++|.|.+++++|++++ +++++|++|+ .+..
T Consensus 7 ~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~-v~vi~Is~D~-~~~~ 84 (202)
T 1uul_A 7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG-CEVLACSMDS-EYSH 84 (202)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT-EEEEEEESSC-HHHH
T ss_pred cCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCCC-HHHH
Confidence 46999999988 44 78 89999999999 999999 9999999999999999999998764 9999999974 5567
Q ss_pred HhHHhcC----C--CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KGYFSKM----P--WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
++|.+.+ + ...+++. .|....+++.|++. .+|+++|+|++|+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~p~l-~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~ 142 (202)
T 1uul_A 85 LAWTSIERKRGGLGQMNIPIL-ADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI 142 (202)
T ss_dssp HHHHHSCGGGTCCCSCSSCEE-ECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHhhCCCCCCceeEE-ECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence 7777765 1 2334433 22345899999999 99999999999999985
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=143.68 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=97.8
Q ss_pred hcCccCCcee-cc--CC--ceeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 15 LSSSARDFLI-RS--NG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 15 ~g~~~p~f~~-~~--~g--~~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
+|+++|+|++ +. +| ++++++++ +|| ++|+|| ++||++|+.++|.|.+++++|++++ +++++|++|+ .+..
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~Is~d~-~~~~ 79 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN-VELLGCSVDS-KFTH 79 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT-EEEEEEESSC-HHHH
T ss_pred CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEeCC-HHHH
Confidence 5899999988 56 89 89999999 999 999999 9999999999999999999998774 9999999974 5677
Q ss_pred HhHHhcCC------CcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 87 KGYFSKMP------WLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
++|.+.+. ...+++. .|....+++.|++. .+|+++|+|++|++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l-~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~ 136 (192)
T 2h01_A 80 LAWKKTPLSQGGIGNIKHTLI-SDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHL 136 (192)
T ss_dssp HHHHTSCGGGTCCCSCSSEEE-ECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred HHHHHhHHhhCCccCCCcCeE-ECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEE
Confidence 77777661 2334433 22345899999999 89999999999999985
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=143.56 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=96.3
Q ss_pred hcCc----cCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 15 LSSS----ARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 15 ~g~~----~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
+|+. +|+|++ +.+|+++++++++|| ++|+|| ++||+.|..++|.|.+++++|++++ +.+++|+.| +.+..+
T Consensus 23 ~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~-~~vv~Vs~D-~~~~~~ 100 (179)
T 3ixr_A 23 IGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN-ATVLGVSRD-SVKSHD 100 (179)
T ss_dssp TTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT-EEEEEEESC-CHHHHH
T ss_pred cCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHH
Confidence 4666 999988 689999999999999 999998 8999999999999999999999875 999999987 456778
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCC------------cceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMG------------IPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~ 133 (350)
+|.+.++.....+.| ....+++.|++.. .|+++|||++|+|++.
T Consensus 101 ~~~~~~~~~f~~l~D--~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~ 156 (179)
T 3ixr_A 101 SFCAKQGFTFPLVSD--SDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA 156 (179)
T ss_dssp HHHHHHTCCSCEEEC--TTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred HHHHHcCCceEEEEC--CchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence 888876543322333 3348999999864 5889999999999975
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=147.32 Aligned_cols=117 Identities=16% Similarity=0.304 Sum_probs=100.3
Q ss_pred hhcCccCCceec--cCCceeecCCCCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CC
Q 018808 14 LLSSSARDFLIR--SNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------ED 82 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~~~~l~~~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~ 82 (350)
-+|+++|+|++. .+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|++++ +.++.|++| ++
T Consensus 19 ~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~v~~d~~~~~~~d~ 97 (196)
T 2ywi_A 19 PLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG-VSFVAINSNDAEQYPEDS 97 (196)
T ss_dssp CTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT-CEEEEEECSCTTTCGGGS
T ss_pred CcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEEECCccccccccC
Confidence 469999999774 79999999999997 9999999999999999999999999998764 999999997 56
Q ss_pred HHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+.++++.+.++.....+.+ ....+++.|++.++|+++|+|++|+++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 146 (196)
T 2ywi_A 98 PENMKKVAEELGYPFPYLYD--ETQEVAKAYDAACTPDFYIFDRDLKCVYR 146 (196)
T ss_dssp HHHHHHHHHHHTCCSCEEEC--SSCHHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred HHHHHHHHHHcCCCceEEEC--CchHHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence 77888888877643222323 33478999999999999999999999986
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=171.28 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=127.7
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
++.|+ ++|.||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|
T Consensus 452 ~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~------------------------~~~~~~ 505 (780)
T 3apo_A 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHE------------------------GLCNMY 505 (780)
T ss_dssp TTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHT
T ss_pred HcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEeCCCCH------------------------HHHHHc
Confidence 44788 99999999999999999999999999975 4899999987654 588999
Q ss_pred CCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCceee--
Q 018808 114 KVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS-- 191 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v~-- 191 (350)
++.++|+++++ ++|++... .| ..+.+.+.+++..... .. +...+++.+.
T Consensus 506 ~v~~~Pt~~~~-~~g~~~~~--------~g----~~~~~~l~~fi~~~~~----~~------------v~~l~~~~f~~~ 556 (780)
T 3apo_A 506 NIQAYPTTVVF-NQSSIHEY--------EG----HHSAEQILEFIEDLRN----PS------------VVSLTPSTFNEL 556 (780)
T ss_dssp TCCSSSEEEEE-ETTEEEEE--------CS----CSCHHHHHHHHHHHHS----CS------------EEECCHHHHHHH
T ss_pred CCCcCCeEEEE-cCCceeee--------cC----cccHHHHHHHHHhhcc----cc------------eeecCcccHHHH
Confidence 99999999999 56765221 11 2345555555543211 11 1111111111
Q ss_pred -ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 192 -VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 192 -l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
...-+++.++|.|+++||++|+.+.|.+.++++.+++. +.++.|+++.. ..++
T Consensus 557 v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~-----------------------~~l~ 610 (780)
T 3apo_A 557 VKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQY-----------------------HSFC 610 (780)
T ss_dssp TTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTT-----------------------HHHH
T ss_pred hhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcch-----------------------HHHH
Confidence 11112467899999999999999999999999999864 88888887643 4578
Q ss_pred HHcCCCCccEEEEECCCC
Q 018808 271 RYFELSTLPTLVIIGPDG 288 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~~G 288 (350)
+.|+|.++|+++++...+
T Consensus 611 ~~~~v~~~Pti~~~~~~~ 628 (780)
T 3apo_A 611 TQENVQRYPEIRFYPQKS 628 (780)
T ss_dssp HHTTCCSSSEEEEECCCS
T ss_pred HHcCCCCCCeEEEEcCCC
Confidence 899999999999996543
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=158.91 Aligned_cols=119 Identities=21% Similarity=0.231 Sum_probs=102.1
Q ss_pred hhhhcCccCCce-----e-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC----
Q 018808 12 QSLLSSSARDFL-----I-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---- 80 (350)
Q Consensus 12 ~~~~g~~~p~f~-----~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d---- 80 (350)
..-+|.++|+|+ + +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +.++.|+++
T Consensus 50 ~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~-v~vi~Vs~d~~~~ 128 (352)
T 2hyx_A 50 QLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG-LAVIGVHTPEYAF 128 (352)
T ss_dssp SCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEECCSSGG
T ss_pred ccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC-eEEEEEECCcccc
Confidence 345799999999 7 579999999999999 9999999999999999999999999998764 999999976
Q ss_pred -CCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 81 -EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++.+.++++++.++.. +++. .+....+++.|++.++|+++|+|++|+++++
T Consensus 129 ~d~~~~~~~~~~~~~l~-fpv~-~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 129 EKVPGNVAKGAANLGIS-YPIA-LDNNYATWTNYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp GGCHHHHHHHHHHHTCC-SCEE-ECTTSHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred cCCHHHHHHHHHHcCCC-ccEE-eCCcHHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence 4678899999887653 3322 2333589999999999999999999999875
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=142.65 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=96.8
Q ss_pred hhcCccCCcee-cc--CCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 14 LLSSSARDFLI-RS--NGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~~-~~--~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
.+|+++|+|++ +. +|+.++++++ +|| ++|+||++||++|+.+.|.|.+++++ ++.++.|+++++.+.+++
T Consensus 23 ~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~ 97 (168)
T 2b1k_A 23 LIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAIS 97 (168)
T ss_dssp TTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHH
T ss_pred ccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHH
Confidence 57999999988 56 8999999985 899 99999999999999999999998875 388999999999999999
Q ss_pred HHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.+.++... +....+....+++.|++.++|+++++|++|+++++
T Consensus 98 ~~~~~~~~~-~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 141 (168)
T 2b1k_A 98 WLKELGNPY-ALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 141 (168)
T ss_dssp HHHHHCCCC-SEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred HHHHcCCCC-ceeeECcchHHHHHcCccccCEEEEECCCCeEEEE
Confidence 988776432 21113344589999999999999999999999874
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=143.25 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=96.4
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+|| ++||++|..++|.|.+++++| + ++++++|+.| +.+..++|.
T Consensus 18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~-~v~vv~Is~d-~~~~~~~~~ 93 (165)
T 1q98_A 18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S-NTIVLCISAD-LPFAQARFC 93 (165)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T-TEEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C-CCEEEEEeCC-CHHHHHHHH
Confidence 46999999988 689999999999999 999999 799999999999999999999 4 4999999986 456778888
Q ss_pred hcCCCcccc-cCChhhHHHHHhhcCCCC---------cceEEEECCCCeEEec
Q 018808 91 SKMPWLAVP-FSDSETRDKLDELFKVMG---------IPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~~---------~P~~~lid~~G~v~~~ 133 (350)
+.++...++ +.|. ....+++.|++.. .|+++|+|++|++++.
T Consensus 94 ~~~~~~~~~~l~D~-~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~ 145 (165)
T 1q98_A 94 GAEGIENAKTVSTF-RNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS 145 (165)
T ss_dssp TTTTCTTEEEEECT-TCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHcCCCceEEeecc-ccchHHHHhCceecccccCCccceeEEEEcCCCEEEEE
Confidence 877652344 3333 1358999999853 5999999999999985
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=144.71 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=96.5
Q ss_pred hhcCccCCceec-c---CCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR-S---NGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~---~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+++|+|++. . +|+++++++++|| ++|+|| ++||++|..++|.|.+++++|++++ +++++|++|+ .+..+
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~-v~vv~Is~D~-~~~~~ 97 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN-TEVVACSVDS-QFTHL 97 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT-EEEEEEESSC-HHHHH
T ss_pred CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHHH
Confidence 469999999884 3 4589999999999 999999 9999999999999999999998774 9999999964 55677
Q ss_pred hHHhcC----C--CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM----P--WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~----~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.. + ...+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 98 ~~~~~~~~~~g~~~~~fp~l-~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~ 154 (211)
T 2pn8_A 98 AWINTPRRQGGLGPIRIPLL-SDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI 154 (211)
T ss_dssp HHHTSCGGGTCCCSCSSCEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHhhhccCccCCceEEE-ECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEE
Confidence 777765 1 2344433 22345899999995 69999999999999985
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=145.43 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=97.0
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|++++|++++|| ++|+|| ++||+.|..++|.|.+++++| + .+++++|+.| +.+.+++|.
T Consensus 53 ~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~-~v~vv~Is~D-~~~~~~~~~ 128 (200)
T 3zrd_A 53 QIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E-NTVVLCISSD-LPFAQSRFC 128 (200)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T-TEEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C-CCEEEEEECC-CHHHHHHHH
Confidence 46999999988 689999999999999 999999 679999999999999999999 4 4999999987 566778888
Q ss_pred hcCCCcccc-cCChhhHHHHHhhcCCC---------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVP-FSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 133 (350)
+.++...++ +.|.. ...+++.|++. ..|+++|||++|+|++.
T Consensus 129 ~~~~~~~f~~l~D~~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~ 180 (200)
T 3zrd_A 129 GAEGLSNVITLSTLR-GADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYS 180 (200)
T ss_dssp TTTTCTTEEEEETTS-CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHcCCCCceEEecCc-hHHHHHHhCceeecccCCCccccEEEEECCCCeEEEE
Confidence 887762444 33331 45899999986 36999999999999985
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-19 Score=147.72 Aligned_cols=118 Identities=21% Similarity=0.314 Sum_probs=93.7
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~ 84 (350)
..|+++|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|++|. +.+
T Consensus 23 ~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~~~~~~~ 101 (190)
T 2vup_A 23 SAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG-FTVLAFPCNQFGGQEPGNEE 101 (190)
T ss_dssp -CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-CEEEEEECCCSTTCCCSCHH
T ss_pred CCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC-eEEEEEEcCccCCCCCCCHH
Confidence 34789999988 689999999999999 9999999999999999999999999999874 9999999983 677
Q ss_pred HHHhHH-hcCCCcccccCC-hhhHHH----H-----HhhcCCCCcc------eEEEECCCCeEEec
Q 018808 85 AFKGYF-SKMPWLAVPFSD-SETRDK----L-----DELFKVMGIP------HLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~-~~~~~~----l-----~~~~~v~~~P------~~~lid~~G~v~~~ 133 (350)
.++++. +.++.. +++.. .+.... + ...|++.++| +++|||++|+++++
T Consensus 102 ~~~~~~~~~~~~~-~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 102 EIKEFVCTKFKAE-FPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp HHHHHHHHHHCCC-SCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhcCCC-eEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 888888 665432 22221 111111 1 2347888888 99999999999885
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-19 Score=141.90 Aligned_cols=116 Identities=17% Similarity=0.374 Sum_probs=96.2
Q ss_pred hhhcCccCCcee-ccCC--------ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC
Q 018808 13 SLLSSSARDFLI-RSNG--------DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g--------~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
..+|+.+|+|.+ +.+| +.+++++++|| ++|+||++||++|+.+.|.|.+++++ +++.++.|+++++
T Consensus 8 ~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~ 83 (156)
T 1kng_A 8 ALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDA 83 (156)
T ss_dssp ----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCC
T ss_pred HHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCC
Confidence 467999999988 6788 99999999999 99999999999999999999988775 2599999999999
Q ss_pred HHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+.++++.+.+++. ++....+....+++.|++.++|+++++|++|+++++
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 84 ADNARRFLGRYGNP-FGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp HHHHHHHHHHHCCC-CSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred HHHHHHHHHHcCCC-CceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence 99999999887643 221223445689999999999999999999999874
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=140.61 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=96.1
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
..+|+++|+|++ +.+|+++++++++|| ++|+||+ +||++|..++|.|.+++++| + ++++++|+.|+ .+..++|
T Consensus 16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~-~v~vv~is~d~-~~~~~~~ 91 (163)
T 1psq_A 16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D-NTVVLTVSMDL-PFAQKRW 91 (163)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T-TEEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C-CcEEEEEECCC-HHHHHHH
Confidence 356999999988 689999999999999 9999995 99999999999999999999 4 59999999874 5667788
Q ss_pred HhcCCCcccc-cCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVP-FSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
.+.++...++ ..|. ....+++.|++.. .|+++|+|++|++++.
T Consensus 92 ~~~~~~~~~~~l~D~-~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~ 141 (163)
T 1psq_A 92 CGAEGLDNAIMLSDY-FDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV 141 (163)
T ss_dssp HHHHTCTTSEEEECT-TTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred HHhcCCCCcEEecCC-chhHHHHHhCCccccCCceEEEEEEEcCCCeEEEE
Confidence 8776652344 3331 3358999999873 4999999999999985
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=137.43 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=95.4
Q ss_pred CCcee-ccCCceeecCCCCCc-EEEEEecCCChh-hhhhhHHHHHHHHHhccC---CCEEEEEEECCC---CHHHHHhHH
Q 018808 20 RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQ---GDFEVIFVSGDE---DDEAFKGYF 90 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~-C~~~~~~l~~l~~~~~~~---~~~~~v~i~~d~---~~~~~~~~~ 90 (350)
|+|++ +.+|+++++++++|| ++|+||++||++ |+.++|.|.++++++++. .++++++|++|. +.+.+++|.
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 99988 689999999999999 999999999997 999999999999999752 259999999983 577888998
Q ss_pred hcCCCcccc-cCChhhHHHHHhhcCCCCcc---------------eEEEECCCCeEEec
Q 018808 91 SKMPWLAVP-FSDSETRDKLDELFKVMGIP---------------HLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~ 133 (350)
+.++..... ..+.+....+++.|++...| +++|+|++|+++.+
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 87 QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 877532221 22334556899999999888 89999999999885
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-20 Score=147.20 Aligned_cols=120 Identities=38% Similarity=0.785 Sum_probs=100.8
Q ss_pred CccCCcee-ccCCceeecCC-CCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHh
Q 018808 17 SSARDFLI-RSNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+.+|+|++ +.+|+.+++++ ++|| ++|+||++||++|+.+.|.|.++++++++. .++.++.|++|.+.+.++++.+
T Consensus 2 ~~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~ 81 (143)
T 2lus_A 2 EFIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMM 81 (143)
Confidence 45799988 68999999999 9997 999999999999999999999999999643 2599999999988888888888
Q ss_pred cC--CCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCcc
Q 018808 92 KM--PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137 (350)
Q Consensus 92 ~~--~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~ 137 (350)
.+ +|..+++. .+....+++.|++.++|+++++|++|+++++.+..
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 82 ESHGDWLAIPYR-SGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 76 44445443 33445899999999999999999999999875443
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=156.95 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=97.7
Q ss_pred cccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 176 SHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 176 ~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
+++|+| +.+.+|+.++|++++||+|||+|| +.|||.|..+++.+++ ...++ ++|++||.| +.+..++|.++
T Consensus 2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~--~~v~gis~D-~~~~~~~f~~~ 74 (322)
T 4eo3_A 2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEK--AQVVGISRD-SVEALKRFKEK 74 (322)
T ss_dssp CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTT--EEEEEEESC-CHHHHHHHHHH
T ss_pred CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCC--CEEEEEeCC-CHHHHHHHHHh
Confidence 468999 899999999999999999999999 5699999999887753 23334 999999998 67777888877
Q ss_pred CCCccccCCchhHHHHHHHcCC----CCccEEEEECCCCCEEeccch
Q 018808 254 MPWLALPFKDKSREKLARYFEL----STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~v----~~~P~~~lid~~G~i~~~~~~ 296 (350)
++ ++||++.|.++++++.||+ ..+|++||||++|+|++.+.+
T Consensus 75 ~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~ 120 (322)
T 4eo3_A 75 ND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRR 120 (322)
T ss_dssp HT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEES
T ss_pred hC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeC
Confidence 66 7899999999999999999 458999999999999988765
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=141.54 Aligned_cols=114 Identities=22% Similarity=0.180 Sum_probs=95.8
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|+++|+|++ +.+|+++++++++|| ++|+|| ++||++|..++|.|.+++++ + ++.+++|+.| +.+..++|.
T Consensus 21 ~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~-~~~vv~is~d-~~~~~~~~~ 95 (166)
T 3p7x_A 21 NEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E-EGIVLTISAD-LPFAQKRWC 95 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T-TSEEEEEESS-CHHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C-CCEEEEEECC-CHHHHHHHH
Confidence 46999999988 689999999999999 999999 68999999999999999887 3 4999999987 567788888
Q ss_pred hcCCCccccc-CChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPF-SDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
+.++...+++ .|. ....+++.|++.. .|+++|||++|++++.
T Consensus 96 ~~~~~~~~~~l~D~-~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~ 144 (166)
T 3p7x_A 96 ASAGLDNVITLSDH-RDLSFGENYGVVMEELRLLARAVFVLDADNKVVYK 144 (166)
T ss_dssp HHHTCSSCEEEECT-TTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred HHcCCCceEEccCC-chhHHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence 8877633443 333 1348999999985 8999999999999985
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=143.80 Aligned_cols=117 Identities=20% Similarity=0.286 Sum_probs=97.4
Q ss_pred hhcCccCCceec----cCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~----~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+++|+|++. .+|+++++++++|| ++|+|| ++||++|+.+++.|.+++++|++++ +++++|++|+ .+..+
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~-v~vv~Is~D~-~~~~~ 105 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN-CEVVAVSVDS-HFSHL 105 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT-EEEEEEESSC-HHHHH
T ss_pred cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHHH
Confidence 579999999884 36899999999999 999999 9999999999999999999998774 9999999984 45666
Q ss_pred hHHhcC----C--CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM----P--WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~----~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.+ + ...+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 106 ~~~~~~~~~~g~~~~~fp~l-~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~ 162 (220)
T 1zye_A 106 AWINTPRKNGGLGHMNIALL-SDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL 162 (220)
T ss_dssp HHHTSCGGGTCCCSCSSEEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHhCCCcCCceEEE-ECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEE
Confidence 776654 2 2334433 22345899999998 99999999999999985
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=142.74 Aligned_cols=117 Identities=25% Similarity=0.247 Sum_probs=98.1
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
.-+|+++|+|++ +.+|+++++++++|| ++|+||++| |++|+.++|.|.+++++| . ++++++|+.|+ .+..++|
T Consensus 18 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~-~~~vv~is~d~-~~~~~~~ 93 (167)
T 2jsy_A 18 VKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G-DVNVYTISADL-PFAQARW 93 (167)
T ss_dssp CCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S-SCEEEEEECSS-GGGTSCC
T ss_pred cCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C-CCEEEEEECCC-HHHHHHH
Confidence 346999999988 689999999999999 999999999 999999999999999999 3 59999999974 4567778
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
.+.+++..+++........+.+.|++.. .|+++|+|++|+++++
T Consensus 94 ~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~ 143 (167)
T 2jsy_A 94 CGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYA 143 (167)
T ss_dssp GGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEE
T ss_pred HHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEE
Confidence 8877763455432213458899999986 4999999999999986
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=140.01 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=97.8
Q ss_pred hhcCccCCcee---ccCC--ceeecCC-CCCc-EEEEEe-cCCChhhh-hhhHHHHHHHHHhccCCCEE-EEEEECCCCH
Q 018808 14 LLSSSARDFLI---RSNG--DQVKLDS-LKGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDFE-VIFVSGDEDD 83 (350)
Q Consensus 14 ~~g~~~p~f~~---~~~g--~~~~l~~-~~gk-~~v~F~-~~~C~~C~-~~~~~l~~l~~~~~~~~~~~-~v~i~~d~~~ 83 (350)
.+|+++|+|++ +.+| +++++++ ++|| ++|+|| ++||++|. .++|.|.+++++|++++ ++ +++|+.| +.
T Consensus 5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~-v~~vv~Is~d-~~ 82 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVN-DP 82 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESS-CH
T ss_pred CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECC-CH
Confidence 46999999987 4689 9999999 8999 999999 89999999 99999999999998775 99 9999987 46
Q ss_pred HHHHhHHhcCCCc-ccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMPWL-AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
+..++|.+.++.. .+++. .|....+++.||+. ..|+++||| +|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l-~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~ 142 (162)
T 1tp9_A 83 FVMKAWAKSYPENKHVKFL-ADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA 142 (162)
T ss_dssp HHHHHHHHTCTTCSSEEEE-ECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEE-ECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEE
Confidence 7788888887753 35533 23346899999986 379999999 9999985
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=142.59 Aligned_cols=115 Identities=14% Similarity=0.282 Sum_probs=95.5
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-----CCHHHHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-----~~~~~~~ 87 (350)
++..+| .+ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+++++|+.++ +.+++|+++ .+.+.++
T Consensus 16 ~~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~ 92 (164)
T 2h30_A 16 VPHTMS--TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS-ANLITVASPGFLHEKKDGEFQ 92 (164)
T ss_dssp HHHHHT--TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT-SEEEEEECTTSTTCCCTTHHH
T ss_pred cCCcCC--ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC-cEEEEEEcCCCccccCHHHHH
Confidence 355556 44 679999999999999 9999999999999999999999999998775 999999975 3566788
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++....++..+++. .+....+++.|++.++|+++++|++|+++++
T Consensus 93 ~~~~~~~~~~~~~~-~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 93 KWYAGLNYPKLPVV-TDNGGTIAQNLNISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp HHHTTSCCTTSCEE-ECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred HHHHhCCCCcceEE-EcCchHHHHHcCCCccceEEEECCCCcEEEE
Confidence 88887766544432 2344589999999999999999999999874
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-20 Score=149.18 Aligned_cols=117 Identities=29% Similarity=0.530 Sum_probs=99.2
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHH-HHHHhc-cCCCEEEEEEECCCCHHHHHhH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE-VYNELS-RQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~-l~~~~~-~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
-+|+++|+|++ +.+|+.+++++++|| ++|+||++||++|+.+.|.|.+ ++++++ +. ++.++.|++|.+.+.++++
T Consensus 8 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~-~~~vv~v~~d~~~~~~~~~ 86 (159)
T 2ls5_A 8 RIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA-DFALIGIDRDEPLEKVLAF 86 (159)
Confidence 36999999988 689999999999999 9999999999999999999998 999987 44 5999999998877778888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcC--CCCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFK--VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~P~~~lid~~G~v~~~ 133 (350)
.+.+++ .+++. .+....+.+.|+ +.++|+++++|++|+++++
T Consensus 87 ~~~~~~-~~~~~-~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~ 130 (159)
T 2ls5_A 87 AKSTGV-TYPLG-LDPGADIFAKYALRDAGITRNVLIDREGKIVKL 130 (159)
Confidence 887765 33333 234458899999 4569999999999999875
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=144.14 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=95.7
Q ss_pred hhcCccCCceec-c-C--CceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR-S-N--GDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~-~--g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+++|+|++. . + |++++|++++|| ++|+||+ +||++|..++|.|.+++++|++++ +++++|++|+ .+..+
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g-v~vv~Is~D~-~~~~~ 126 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN-TEVVACSVDS-QFTHL 126 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEEESSC-HHHHH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHHH
Confidence 479999999873 3 4 569999999999 9999999 999999999999999999998875 9999999875 45566
Q ss_pred hHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.+ ....+++. .|....+++.|++. .+|+++|||++|+|++.
T Consensus 127 ~~~~~~~~~~~~~~~~fp~l-~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~ 183 (240)
T 3qpm_A 127 AWIITPRKQGGLGPMKIPLL-SDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQI 183 (240)
T ss_dssp HHHHSCGGGTCCCSCSSCEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHhhcCCCCCceeEE-eCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEE
Confidence 666654 12344433 23335899999997 78999999999999885
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=137.88 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=87.5
Q ss_pred hhcCccCCcee-ccC-CceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCH
Q 018808 14 LLSSSARDFLI-RSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~-g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~ 83 (350)
....++|+|++ +.+ |+.++|++++|| +||+||++||++| .++|.|.+++++|++++ +++|+|++| ++.
T Consensus 12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g-~~vlgvs~d~f~~~e~~~~ 89 (207)
T 2r37_A 12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG-LVILGFPCNQFGKQEPGEN 89 (207)
T ss_dssp ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT-EEEEEEECCCBTTCCCSCH
T ss_pred cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC-EEEEEEECcccCcCCCCCH
Confidence 44678999988 678 999999999999 9999999999999 78999999999999875 999999976 245
Q ss_pred HHHHhHHh------cCCCccccc-CChhh--------HHHHHhh-------cC--------------CCCcceEEEECCC
Q 018808 84 EAFKGYFS------KMPWLAVPF-SDSET--------RDKLDEL-------FK--------------VMGIPHLVILDEN 127 (350)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~-~~~~~--------~~~l~~~-------~~--------------v~~~P~~~lid~~ 127 (350)
+.+++|.+ .++. .+|+ .+.+. ...+... ++ +.+.|+++|||++
T Consensus 90 ~~i~~f~~~~~~~~~~~~-~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~ 168 (207)
T 2r37_A 90 SEILPTLKYVRPGGGFVP-NFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPD 168 (207)
T ss_dssp HHHHHHHHHTSSCTTCCC-SSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTT
T ss_pred HHHHHHHHhcchhhccCc-cceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCC
Confidence 77888888 6653 3333 22110 1112221 11 3344899999999
Q ss_pred CeEEec
Q 018808 128 GKVLSD 133 (350)
Q Consensus 128 G~v~~~ 133 (350)
|+++.+
T Consensus 169 G~i~~~ 174 (207)
T 2r37_A 169 GIPIMR 174 (207)
T ss_dssp SCEEEE
T ss_pred CcEEEE
Confidence 999885
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=141.20 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=89.3
Q ss_pred hhcCccCCcee-ccC-CceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCH
Q 018808 14 LLSSSARDFLI-RSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~-g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~ 83 (350)
..+.++|+|++ +.+ |+.++|++++|| +||+||++||++|+ ++|.|++++++|++++ +++++|+++ ++.
T Consensus 30 ~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g-~~Vlgvs~d~f~~~e~~~~ 107 (215)
T 2i3y_A 30 DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG-LVVLGFPCNQFGKQEPGDN 107 (215)
T ss_dssp CCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSCH
T ss_pred cccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC-eEEEEEEccccCcCCCCCH
Confidence 34668999988 678 999999999999 99999999999999 9999999999999875 999999976 245
Q ss_pred HHHHhHHh------cCCCcccccC-Chhh--------HHHHHhh-------c--------------CCCCcceEEEECCC
Q 018808 84 EAFKGYFS------KMPWLAVPFS-DSET--------RDKLDEL-------F--------------KVMGIPHLVILDEN 127 (350)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~~-~~~~--------~~~l~~~-------~--------------~v~~~P~~~lid~~ 127 (350)
+.+++|++ .++. .+|+. +.+. ...+... + .+.+.|+++|||++
T Consensus 108 ~~i~~f~~~~~~~~~~~~-~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~ 186 (215)
T 2i3y_A 108 KEILPGLKYVRPGGGFVP-SFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD 186 (215)
T ss_dssp HHHHHHHHHTSSCTTCCC-SSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred HHHHHHHHhccchhccCc-cceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCC
Confidence 77888888 6653 34432 2111 1112211 1 13344899999999
Q ss_pred CeEEec
Q 018808 128 GKVLSD 133 (350)
Q Consensus 128 G~v~~~ 133 (350)
|+++.+
T Consensus 187 G~vv~~ 192 (215)
T 2i3y_A 187 GIPVMR 192 (215)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 999885
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=139.20 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=96.4
Q ss_pred hhcCccCCceec--cCCceeecCCC-CCc-EEEEEe-cCCChhhhh-hhHHHHHHHHHhccCCCE-EEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLIR--SNGDQVKLDSL-KGK-IGLYFS-ASWCGPCQR-FTPILAEVYNELSRQGDF-EVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~~~~l~~~-~gk-~~v~F~-~~~C~~C~~-~~~~l~~l~~~~~~~~~~-~~v~i~~d~~~~~~ 86 (350)
-+|+++|+|++. .+|++++|+++ +|| ++|+|| ++|||.|.. ++|.|.+++++|++++ + ++++|+.| +.+..
T Consensus 4 ~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g-v~~vv~Is~d-~~~~~ 81 (167)
T 2wfc_A 4 KEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG-VDIIACMAVN-DSFVM 81 (167)
T ss_dssp CTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT-CCEEEEEESS-CHHHH
T ss_pred CCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCC-CHHHH
Confidence 369999999774 68999999998 999 888875 999999999 9999999999998875 9 99999987 46678
Q ss_pred HhHHhcCCCc-ccccCChhhHHHHHhhcCCCCc-----------ceEEEECCCCeEEec
Q 018808 87 KGYFSKMPWL-AVPFSDSETRDKLDELFKVMGI-----------PHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~~-----------P~~~lid~~G~v~~~ 133 (350)
++|.+..+.. .+++. .|...++++.||+... |+++|| ++|+|++.
T Consensus 82 ~~~~~~~~~~~~fp~l-~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~ 138 (167)
T 2wfc_A 82 DAWGKAHGADDKVQML-ADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKV 138 (167)
T ss_dssp HHHHHHTTCTTTSEEE-ECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEE
T ss_pred HHHHHhcCCCcceEEE-ECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEE
Confidence 8888887754 24533 2334589999998754 999999 99999985
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-18 Score=140.58 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=96.9
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChh-hhhhhHHHHHHHHHhccCC--CEEEEEEECCC---CHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDE 84 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~-C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~---~~~ 84 (350)
.++|+++|+|++ +.+| .+++++++|| ++|+||++||++ |+.++|.|.++++++++++ ++.+++|++|. +.+
T Consensus 10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~ 88 (172)
T 2k6v_A 10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE 88 (172)
T ss_dssp EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence 467999999988 6899 9999999999 999999999996 9999999999999998642 59999999974 467
Q ss_pred HHHhHHhcCCCcccccCChh-hHHHHHhhcCC---------------CCcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWLAVPFSDSE-TRDKLDELFKV---------------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~v---------------~~~P~~~lid~~G~v~~~ 133 (350)
.+++|.+.++.....+.+.+ ....+++.|++ .++|+++|+| +|+++++
T Consensus 89 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 89 VADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp HHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEE
T ss_pred HHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEE
Confidence 88888888764333333322 22577777774 5789999999 9999875
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=138.70 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=95.1
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+++++++++|| ++|+|| ++||++|..++|.|.+++++| + ++++++|+.|+ .+..++|.
T Consensus 22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~-~v~vv~Is~d~-~~~~~~~~ 97 (171)
T 2yzh_A 22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E-GVDVTVVSMDL-PFAQKRFC 97 (171)
T ss_dssp CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T-TEEEEEEESSC-HHHHHHHH
T ss_pred CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C-CceEEEEeCCC-HHHHHHHH
Confidence 46999999988 689999999999999 999999 799999999999999999999 3 59999999874 56788888
Q ss_pred hcCCCccccc-CChhhHHHHHhhcCCC---------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPF-SDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 133 (350)
+.++...+++ .|. ....+ +.|++. ..|+++|+|++|++++.
T Consensus 98 ~~~~~~~~~~l~D~-~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~ 148 (171)
T 2yzh_A 98 ESFNIQNVTVASDF-RYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYV 148 (171)
T ss_dssp HHTTCCSSEEEECT-TTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHcCCCCeEEeecC-ccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEE
Confidence 8877523443 331 23467 899985 26999999999999985
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=139.29 Aligned_cols=119 Identities=20% Similarity=0.344 Sum_probs=94.9
Q ss_pred hhcCcc--CCcee-ccCCceeecCCCCCc-EEEEEecCCChh-hhhhhHHHHHHHHHhccC--CCEEEEEEECCC---CH
Q 018808 14 LLSSSA--RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQ--GDFEVIFVSGDE---DD 83 (350)
Q Consensus 14 ~~g~~~--p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~-C~~~~~~l~~l~~~~~~~--~~~~~v~i~~d~---~~ 83 (350)
.+|.++ |+|++ +.+|+++++++++|| ++|+||++||++ |..++|.|.+++++++++ .++.+++|++|. +.
T Consensus 14 ~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~ 93 (200)
T 2b7k_A 14 GYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSP 93 (200)
T ss_dssp --CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCH
T ss_pred ccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCH
Confidence 457786 99988 689999999999999 999999999997 999999999999999753 259999999984 67
Q ss_pred HHHHhHHhcCC--CcccccCChhhHHHHHhhcCCC-Ccc---------------eEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMP--WLAVPFSDSETRDKLDELFKVM-GIP---------------HLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-~~P---------------~~~lid~~G~v~~~ 133 (350)
+.+++|.+.++ |..++ .+.+....+++.|++. ..| +++|||++|+++..
T Consensus 94 ~~~~~~~~~~~~~~~~l~-~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~ 160 (200)
T 2b7k_A 94 AVLKEYLSDFHPSILGLT-GTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 160 (200)
T ss_dssp HHHHHHHTTSCTTCEEEE-CCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred HHHHHHHHHcCCCceEEe-CCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence 78888888765 32222 3355667899999987 343 88999999999875
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=140.94 Aligned_cols=117 Identities=13% Similarity=0.208 Sum_probs=94.8
Q ss_pred hhhcCccCCcee-cc--CC-ceeecCC-CCCc--EEEEEecCCChhhhh-hhHHHHHHHHHhccCCCEE-EEEEECCCCH
Q 018808 13 SLLSSSARDFLI-RS--NG-DQVKLDS-LKGK--IGLYFSASWCGPCQR-FTPILAEVYNELSRQGDFE-VIFVSGDEDD 83 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~--~g-~~~~l~~-~~gk--~~v~F~~~~C~~C~~-~~~~l~~l~~~~~~~~~~~-~v~i~~d~~~ 83 (350)
--+|+++|+|++ +. +| +++++++ ++|| ++++||++|||.|.. ++|.|.+++++|++++ +. +++|+.| +.
T Consensus 26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g-v~~vv~Is~d-~~ 103 (184)
T 3uma_A 26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG-VDDIAVVAVN-DL 103 (184)
T ss_dssp CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESS-CH
T ss_pred CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CH
Confidence 357999999988 45 88 9999999 8999 555577999999999 7999999999999886 88 9999987 45
Q ss_pred HHHHhHHhcCCCc-ccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMPWL-AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
+..++|.+..+.. .+++. .|....+++.||+. ..|.++||| +|+|++.
T Consensus 104 ~~~~~f~~~~~~~~~fp~l-~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~ 163 (184)
T 3uma_A 104 HVMGAWATHSGGMGKIHFL-SDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKAL 163 (184)
T ss_dssp HHHHHHHHHHTCTTTSEEE-ECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHhCCCCceEEE-EcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEE
Confidence 6778888877755 24433 23345899999985 357899996 9999885
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=136.83 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=95.7
Q ss_pred hhhhcCccCCceec--cCCceeecCC-CCCc-EEE-EEecCCChhhh-hhhHHHHHHHHHhccCCCEEEEE-EECCCCHH
Q 018808 12 QSLLSSSARDFLIR--SNGDQVKLDS-LKGK-IGL-YFSASWCGPCQ-RFTPILAEVYNELSRQGDFEVIF-VSGDEDDE 84 (350)
Q Consensus 12 ~~~~g~~~p~f~~~--~~g~~~~l~~-~~gk-~~v-~F~~~~C~~C~-~~~~~l~~l~~~~~~~~~~~~v~-i~~d~~~~ 84 (350)
..-+|+++|+|++. .+|++++|++ ++|| ++| +||++|||.|. .++|.|.+++++|++++ +.+++ |+.| +.+
T Consensus 14 ~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g-v~vv~~iS~D-~~~ 91 (173)
T 3mng_A 14 PIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG-VQVVACLSVN-DAF 91 (173)
T ss_dssp CCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESS-CHH
T ss_pred CCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEEcCC-CHH
Confidence 44579999999885 6999999999 6999 555 55699999999 59999999999999885 88997 8887 456
Q ss_pred HHHhHHhcCCCc-ccccCChhhHHHHHhhcCCC-------------CcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWL-AVPFSDSETRDKLDELFKVM-------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-------------~~P~~~lid~~G~v~~~ 133 (350)
..++|.+..+.. .+++. .|...++++.||+. ..|+++||| +|+|++.
T Consensus 92 ~~~~f~~~~~~~~~fp~l-~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~ 152 (173)
T 3mng_A 92 VTGEWGRAHKAEGKVRLL-ADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKAL 152 (173)
T ss_dssp HHHHHHHHTTCTTTCEEE-ECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHhCCCCceEEE-ECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEE
Confidence 788888887764 34433 23445899999986 359999999 9999885
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-18 Score=138.94 Aligned_cols=114 Identities=21% Similarity=0.188 Sum_probs=91.5
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++| |++|+.++|.|.+++++ + ++.+++|+.|+ .+..++|.
T Consensus 19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~-~v~vv~Is~D~-~~~~~~~~ 93 (175)
T 1xvq_A 19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S-GATVLCVSKDL-PFAQKRFC 93 (175)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T-TCEEEEEESSC-HHHHTTCC
T ss_pred CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c-CCEEEEEECCC-HHHHHHHH
Confidence 46999999988 689999999999999 999999999 99999999999999998 3 49999999964 55667787
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCc---------ceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGI---------PHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~ 133 (350)
+.+++..+++.. |....+++.|++... |+++|+|++|++++.
T Consensus 94 ~~~~~~~~~~l~-D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~ 144 (175)
T 1xvq_A 94 GAEGTENVMPAS-AFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYT 144 (175)
T ss_dssp ------CEEEEE-CTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred HHcCCCCceEee-CCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEE
Confidence 777653444322 222578999999877 899999999999985
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=135.84 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=95.3
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc---EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK---IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk---~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
-+|+++|+|++ +.+|+++++++++|| ++|+|| ++||++|..++|.|.+++++|++++ .+++|+.| +.+..++
T Consensus 8 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d-~~~~~~~ 84 (159)
T 2a4v_A 8 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSAD-SVTSQKK 84 (159)
T ss_dssp CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESC-CHHHHHH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCC-CHHHHHH
Confidence 46999999988 689999999999874 788887 8999999999999999999998875 99999988 4667888
Q ss_pred HHhcCCCcccc-cCChhhHHHHHhhcCCCCcc------eEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVP-FSDSETRDKLDELFKVMGIP------HLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P------~~~lid~~G~v~~~ 133 (350)
|.+.++.. ++ +.| ....+++.|++...| +++|| ++|++++.
T Consensus 85 ~~~~~~~~-~~~l~D--~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 85 FQSKQNLP-YHLLSD--PKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp HHHHHTCS-SEEEEC--TTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred HHHHhCCC-ceEEEC--CccHHHHHhCCcccccCCccceEEEE-cCCEEEEE
Confidence 88877653 34 333 345899999999888 88999 99999985
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=141.85 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=95.2
Q ss_pred hhcCccCCceec-c---CCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR-S---NGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~---~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+++|+|++. . +|++++|++++|| ++|+|| ++||++|..++|.|.+++++|++++ +++++|++|+ .+...
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g-v~vv~IS~D~-~~~~~ 140 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN-TEVVACSVDS-QFTHL 140 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT-EEEEEEESSC-HHHHH
T ss_pred CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC-CEEEEEcCCC-HHHHH
Confidence 479999999863 2 5789999999999 999999 8999999999999999999998875 9999999875 45566
Q ss_pred hHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.+ ....+++. .|....+++.|++. .+|+++|||++|+|++.
T Consensus 141 ~~~~~~~~~~g~~~~~fp~l-~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~ 197 (254)
T 3tjj_A 141 AWINTPRRQGGLGPIRIPLL-SDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI 197 (254)
T ss_dssp HHHTSCGGGTSCCSCSSCEE-ECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHhcCCccccccee-eCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEE
Confidence 666654 12344433 23335899999986 58999999999999885
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=136.44 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=93.0
Q ss_pred hhcCccCCcee-cc----CC-----ceeecCCC-CCc--EEEEEecCCChhhhhh-hHHHHHHHHHhccCCCEE-EEEEE
Q 018808 14 LLSSSARDFLI-RS----NG-----DQVKLDSL-KGK--IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDFE-VIFVS 78 (350)
Q Consensus 14 ~~g~~~p~f~~-~~----~g-----~~~~l~~~-~gk--~~v~F~~~~C~~C~~~-~~~l~~l~~~~~~~~~~~-~v~i~ 78 (350)
.+|+++|+|++ +. +| ++++++++ +|| ++++||++|||+|..+ +|.|.+++++|++++ +. +++|+
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g-~~~vv~Is 86 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG-VDSVICVA 86 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT-CSEEEEEE
T ss_pred cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEe
Confidence 35779999988 44 47 89999996 996 6778999999999998 999999999998875 88 99999
Q ss_pred CCCCHHHHHhHHhcCCC-cccccCChhhHHHHHhhcCCCC-----------cceEEEECCCCeEEec
Q 018808 79 GDEDDEAFKGYFSKMPW-LAVPFSDSETRDKLDELFKVMG-----------IPHLVILDENGKVLSD 133 (350)
Q Consensus 79 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~~-----------~P~~~lid~~G~v~~~ 133 (350)
.|+ .+..++|.+.++. ..+++. .|....+++.||+.. .|+.++|| +|+|++.
T Consensus 87 ~d~-~~~~~~~~~~~~~~~~fp~l-~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~ 150 (171)
T 2pwj_A 87 IND-PYTVNAWAEKIQAKDAIEFY-GDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKAL 150 (171)
T ss_dssp SSC-HHHHHHHHHHTTCTTTSEEE-ECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred CCC-HHHHHHHHHHhCCCCceEEE-ECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEE
Confidence 874 5678888888876 355543 233458999999853 46788888 9999985
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=135.92 Aligned_cols=116 Identities=13% Similarity=0.179 Sum_probs=93.7
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc--EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
.+|+.+|+|++ +.+| .+++++++|+ ++|+|| ++|||.|..+++.|++++++|++++ +++++|++|+ .+..++|
T Consensus 4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~-v~vigIS~D~-~~~~~~~ 80 (233)
T 2v2g_A 4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG-VKLIALSCDN-VADHKEW 80 (233)
T ss_dssp CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT-EEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC-CEEEEEcCCC-HHHHHHH
Confidence 36999999988 5788 9999999887 888888 8999999999999999999998875 9999999985 3445555
Q ss_pred Hh------cCC-CcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 90 FS------KMP-WLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~------~~~-~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
.+ ..+ ...+++. .|....+++.|++. .+|+++|||++|+|++.
T Consensus 81 ~~~i~~~~~~~~~~~fpil-~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~ 142 (233)
T 2v2g_A 81 SEDVKCLSGVKGDMPYPII-ADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLS 142 (233)
T ss_dssp HHHHHHHHTCCSSCSSCEE-ECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEE
T ss_pred HHHHHHhhCcccCCceEEE-ECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEE
Confidence 55 341 3445533 23445899999985 57999999999999875
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=136.04 Aligned_cols=112 Identities=11% Similarity=0.099 Sum_probs=92.5
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-Chhhh-----hhhHHHHHHHHHhccCCCEEEEEEECCCCHHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQ-----RFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~-----~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~ 85 (350)
.+|+++|+|++ +.+|+.++|++++|| ++|+||.+| ||.|. .+++.|.++ | + .+.+++|+.| +.+.
T Consensus 23 ~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~-gv~VvgIS~D-s~~~ 95 (224)
T 3keb_A 23 RKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--P-HLKLIVITVD-SPSS 95 (224)
T ss_dssp CTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--T-TSEEEEEESS-CHHH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--C-CCEEEEEECC-CHHH
Confidence 46999999988 679999999999999 999999988 99999 888888776 4 3 4899999987 4667
Q ss_pred HHhHHhcCCCcccccC-ChhhHHHHHhhcCCCC---------cceEEEECCCCeEEec
Q 018808 86 FKGYFSKMPWLAVPFS-DSETRDKLDELFKVMG---------IPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~~---------~P~~~lid~~G~v~~~ 133 (350)
.++|.+.++...+++. |.. ...+++.||+.. .|+++|||++|+|++.
T Consensus 96 ~~~f~~~~gl~~fplLsD~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~ 152 (224)
T 3keb_A 96 LARARHEHGLPNIALLSTLR-GRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYS 152 (224)
T ss_dssp HHHHHHHHCCTTCEEEESTT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEE
T ss_pred HHHHHHHcCCCCceEEEcCC-chHHHHHhCCccccccccCCccCEEEEEcCCCEEEEE
Confidence 8888888776445543 321 358999999864 7999999999999985
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-16 Score=132.74 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=90.7
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc---EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk---~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
.+|+.+|+|++ +.+| .+++++++|+ ++++||++|||+|..+++.|++++++|++++ +++++|++|+. +..++|
T Consensus 6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~-v~vi~IS~D~~-~~~~~~ 82 (224)
T 1prx_A 6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN-VKLIALSIDSV-EDHLAW 82 (224)
T ss_dssp CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT-EEEEEEESSCH-HHHHHH
T ss_pred CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC-CEEEEEcCCCH-HHHHHH
Confidence 46999999988 5788 9999999886 5555699999999999999999999998875 99999999854 334444
Q ss_pred Hhc----------CCCcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 90 FSK----------MPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~----------~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
.+. .+ ..+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 83 ~~~i~~~~~~~~~~~-~~fpil-~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~ 146 (224)
T 1prx_A 83 SKDINAYNSEEPTEK-LPFPII-DDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS 146 (224)
T ss_dssp HHHHHHHTTSCCCSC-CSSCEE-ECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred HHHHHHhhCcccccC-cCccee-ecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEE
Confidence 443 33 344433 23445899999984 47999999999999885
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-17 Score=131.79 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=99.9
Q ss_pred hcccccCCc-ee--cC--------CCceeecccc-CCC-EEEEEEeccCCccChh-hHHHHHHHHHHHhcCCCcE-EEEE
Q 018808 173 VLTSHSRDF-VI--SS--------DGRKISVSDL-EGK-TIGLYFSMSSYKASAE-FTPRLVEVYEKLKGKGESF-EIVL 237 (350)
Q Consensus 173 ~~~~~~p~f-~~--~~--------~g~~v~l~~~-~gk-~vlv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~~~~-~vv~ 237 (350)
++|.++|+. +. +. .-+.++++++ +|| +||++||+.|||+|.. +++.+++.+++|++.| + +|++
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~Vig 88 (176)
T 4f82_A 11 QVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWC 88 (176)
T ss_dssp CTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred hcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEE
Confidence 568888987 32 22 2278899997 998 5566888999999999 9999999999999998 9 9999
Q ss_pred EeCCCCHHHHHHhhcCCCCc-cccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccch
Q 018808 238 ISLDDEEESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 238 v~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~ 296 (350)
||+| +....++|.++.... +||++.|.+.++++.||+. ..|++||| ++|+|++.+..
T Consensus 89 IS~D-~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~ 157 (176)
T 4f82_A 89 VSVN-DAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVE 157 (176)
T ss_dssp EESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEEC
T ss_pred EeCC-CHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEc
Confidence 9999 677788888776522 4999999999999999983 25899999 99999998875
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-15 Score=127.45 Aligned_cols=68 Identities=19% Similarity=0.421 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.++ ++|+||++||++|+.+.|.+.++++++++. ..+.++.|+++.+. +..+++.|+
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~~l~~~~~ 86 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET----------------------NSAVCRDFN 86 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT----------------------THHHHHHTT
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh----------------------hHHHHHHcC
Confidence 347 999999999999999999999999999862 25999999986432 137999999
Q ss_pred CCCcceEEEECC
Q 018808 115 VMGIPHLVILDE 126 (350)
Q Consensus 115 v~~~P~~~lid~ 126 (350)
|.++|+++++++
T Consensus 87 v~~~Pt~~~~~~ 98 (244)
T 3q6o_A 87 IPGFPTVRFFXA 98 (244)
T ss_dssp CCSSSEEEEECT
T ss_pred CCccCEEEEEeC
Confidence 999999999975
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=132.10 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=90.1
Q ss_pred hhcCccCCcee-cc--CCceeecCCCCCc--EEE-EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLI-RS--NGDQVKLDSLKGK--IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~-~~--~g~~~~l~~~~gk--~~v-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+.+|+|++ +. +| .+++++++|+ ++| +||++|||.|..+++.|++++++|++++ +++++|++|+. +..+
T Consensus 4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~-v~vi~vS~D~~-~~~~ 80 (220)
T 1xcc_A 4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN-CKLIGFSCNSK-ESHD 80 (220)
T ss_dssp CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT-EEEEEEESSCH-HHHH
T ss_pred CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCH-HHHH
Confidence 46999999988 56 78 9999999997 444 4689999999999999999999998875 99999999854 3334
Q ss_pred hHHh-------cCCCcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 88 GYFS-------KMPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~-------~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
+|.+ ..+ ..+++. .|....+++.|++. .+|+++|||++|++++.
T Consensus 81 ~~~~~i~~~~~~~~-~~fpil-~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~ 143 (220)
T 1xcc_A 81 KWIEDIKYYGKLNK-WEIPIV-CDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT 143 (220)
T ss_dssp HHHHHHHHHHTCSC-CCCCEE-ECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhcCCC-CcceeE-ECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEE
Confidence 4443 233 344433 23445899999984 47999999999999885
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=124.30 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=78.3
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccC
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (350)
+.+.+|....++.+++|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------ 94 (141)
T 3hxs_A 36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE------------------ 94 (141)
T ss_dssp TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------
T ss_pred hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCC------------------
Confidence 456788889999999999999999999999999999999999999864 89999998854
Q ss_pred CchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 262 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|+|.++|+++++|++|+++ +..|
T Consensus 95 -----~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G 123 (141)
T 3hxs_A 95 -----PELARDFGIQSIPTIWFVPMKGEPQ-VNMG 123 (141)
T ss_dssp -----HHHHHHTTCCSSSEEEEECSSSCCE-EEES
T ss_pred -----HHHHHHcCCCCcCEEEEEeCCCCEE-EEeC
Confidence 4589999999999999999999987 5555
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=122.87 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=73.1
Q ss_pred cCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc
Q 018808 184 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD 263 (350)
Q Consensus 184 ~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 263 (350)
+.+|........+||+++|+||++||++|+.+.|.+.+++++++. + +.++.|+++.
T Consensus 13 ~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~--v~~~~v~~~~--------------------- 68 (126)
T 2l57_A 13 SINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-K--FNIYYARLEE--------------------- 68 (126)
T ss_dssp CCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-S--CEEEEEETTS---------------------
T ss_pred ccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-C--eEEEEEeCCC---------------------
Confidence 444444445556789999999999999999999999999999873 3 9999998431
Q ss_pred hhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 264 KSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 264 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+...++++.|++.++|+++++|++|+++.+..|
T Consensus 69 d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G 101 (126)
T 2l57_A 69 EKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQG 101 (126)
T ss_dssp SHHHHHHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred CchHHHHHHcCCcceeEEEEECCCCCEEEEecC
Confidence 123568999999999999999999999988777
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=124.31 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=79.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++|||+|||+||+||+.+.|.|.++++++.++ +.|+.|++|+. .+++.+|+|
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~-----------------------~e~a~~y~V 93 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEV-----------------------PDFNTMYEL 93 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTTTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 3579999999999999999999999999999765 89999999865 347899999
Q ss_pred CCccEEEEECCCCCEE--e-------ccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCee
Q 018808 276 STLPTLVIIGPDGKTL--H-------SNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFV 342 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~--~-------~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (350)
.++||++++ .+|+.+ . +..|. ....++|.+..+....+......++....||-
T Consensus 94 ~siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa-------------~~~k~~l~~~ie~~~r~a~~g~~~v~~p~~~~ 155 (160)
T 2av4_A 94 YDPVSVMFF-YRNKHMMIDLGTGNNNKINWP-------------MNNKQEFIDIVETIFRGARKGRGLVISPKDYS 155 (160)
T ss_dssp CSSEEEEEE-ETTEEEEEECSSSCCSCBCSC-------------CCCHHHHHHHHHHHHHHHHTTCSEEECSSCC-
T ss_pred CCCCEEEEE-ECCEEEEEecCCCCcCeEEee-------------cCCHHHHHHHHHHHHHHhhcCCeEEECCCccc
Confidence 999999999 888887 3 33331 22233444444444444444566666666663
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=132.95 Aligned_cols=117 Identities=18% Similarity=0.343 Sum_probs=91.5
Q ss_pred hhcCccCCcee-ccCCceeec-CCC--CCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH--HH
Q 018808 14 LLSSSARDFLI-RSNGDQVKL-DSL--KGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD--EA 85 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l-~~~--~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~--~~ 85 (350)
.+|+++|+|++ +.+| .+++ +++ +|| +|++||++||++|..+++.|.+++++|++++ +++++|++|+.. ..
T Consensus 6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g-v~VI~VS~Ds~~~~~~ 83 (249)
T 3a2v_A 6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG-VDLIGLSVDSVFSHIK 83 (249)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT-EEEEEEESSCHHHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC-cEEEEEECCCHHHHHH
Confidence 46999999988 5677 8999 999 999 5567899999999999999999999999875 999999998642 22
Q ss_pred HHhHHhc-CC-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 86 FKGYFSK-MP-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
|.+.+.. .+ ...+|+. .|....+++.|++. .+|+++|||++|+++..
T Consensus 84 w~~~~~~~~~~~i~fPil-~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~ 139 (249)
T 3a2v_A 84 WKEWIERHIGVRIPFPII-ADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM 139 (249)
T ss_dssp HHHHHHHHTCCCCCSCEE-ECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEE
T ss_pred HHHHHHHhcCCCCceeEE-ECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEE
Confidence 3332222 11 2334433 33445899999997 89999999999999875
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=126.63 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=78.8
Q ss_pred hcccccCCce--ecCCCceeeccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDFV--ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f~--~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
..+..+|+|. .+.++....+++.+||++||+||++||++|+.+.+.+ .++.++++ + +.++.|+++..
T Consensus 5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~--~~~~~vd~~~~---- 76 (134)
T 2fwh_A 5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--D--TVLLQANVTAN---- 76 (134)
T ss_dssp -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--T--SEEEEEECTTC----
T ss_pred cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--C--cEEEEEeCCCC----
Confidence 3455677773 3445556667777899999999999999999999998 88888875 3 88999988743
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE--eccch
Q 018808 248 KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL--HSNVA 296 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~--~~~~~ 296 (350)
.+...+++++|++.++|+++++|++|+++ .+..|
T Consensus 77 ---------------~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G 112 (134)
T 2fwh_A 77 ---------------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTG 112 (134)
T ss_dssp ---------------CHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCS
T ss_pred ---------------cchHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeee
Confidence 13447799999999999999999999998 56666
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=116.91 Aligned_cols=75 Identities=17% Similarity=0.339 Sum_probs=66.1
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
+..+|+|+|+|||+||++|+.+.|.+.++++.+.+ +.++.|++|.. .+++++|
T Consensus 17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~-----------------------~~l~~~~ 69 (105)
T 3zzx_A 17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDEC-----------------------EDIAQDN 69 (105)
T ss_dssp HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEETTTC-----------------------HHHHHHT
T ss_pred hcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC----eEEEEEecccC-----------------------HHHHHHc
Confidence 34578999999999999999999999999988753 88888988754 5589999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+|.++||++++ ++|+++.+..|
T Consensus 70 ~V~~~PT~~~~-~~G~~v~~~~G 91 (105)
T 3zzx_A 70 QIACMPTFLFM-KNGQKLDSLSG 91 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEEEEES
T ss_pred CCCeecEEEEE-ECCEEEEEEeC
Confidence 99999999998 89999999887
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-16 Score=119.88 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=75.8
Q ss_pred cCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc
Q 018808 184 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD 263 (350)
Q Consensus 184 ~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 263 (350)
..+++.++....+||+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 29 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~-------------------- 85 (128)
T 3ul3_B 29 QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKN-------------------- 85 (128)
T ss_dssp CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGC--------------------
T ss_pred cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC--------------------
Confidence 4556667777788999999999999999999999999999999854 99999988754
Q ss_pred hhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 264 KSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 264 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|+|.++|+++++ ++|+++.+..|
T Consensus 86 ---~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G 114 (128)
T 3ul3_B 86 ---ESLARKFSVKSLPTIILL-KNKTMLARKDH 114 (128)
T ss_dssp ---HHHHHHTTCCSSSEEEEE-ETTEEEEEESS
T ss_pred ---HHHHHHcCCCCcCEEEEE-ECCEEEEEecC
Confidence 468999999999999999 89999988877
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=127.64 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=93.7
Q ss_pred chhhhcCccCCceec----cCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH
Q 018808 11 IQSLLSSSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (350)
Q Consensus 11 ~~~~~g~~~p~f~~~----~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~ 84 (350)
+..-+|++||+|+++ .+++.++|++++|| +||+|| +.|||.|..+++.|++++++|++.+ +++++|++|+. .
T Consensus 21 M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g-~~vigiS~Ds~-~ 98 (216)
T 3sbc_A 21 MVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG-AQVLFASTDSE-Y 98 (216)
T ss_dssp -CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT-EEEEEEESSCH-H
T ss_pred chhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC-ceEEEeecCch-h
Confidence 444679999999763 35579999999999 999999 8999999999999999999999885 99999999854 3
Q ss_pred HHHhHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
.-.+|.... ....+|.. .|...++++.||+. ..+.++|||++|+|.+.
T Consensus 99 sh~aw~~~~~~~~~~~~l~fpll-sD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~ 158 (216)
T 3sbc_A 99 SLLAWTNIPRKEGGLGPINIPLL-ADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHI 158 (216)
T ss_dssp HHHHHHTSCGGGTCCCSCSSCEE-ECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hHHHHHHHHHHhCCccCcccceE-eCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEE
Confidence 333343322 12445533 34556999999983 46789999999999874
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-16 Score=127.46 Aligned_cols=104 Identities=16% Similarity=0.286 Sum_probs=80.0
Q ss_pred ccccCCceecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 175 TSHSRDFVISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 175 ~~~~p~f~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
+...+++ +..++.++++..+||+++|+|| ++||++|+.+.|.| .++.+.+... +.++.|+.+....
T Consensus 27 ~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~----- 96 (154)
T 2ju5_A 27 AAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNH----- 96 (154)
T ss_dssp CCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCC-----
T ss_pred ccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccC-----
Confidence 3344444 3456677777888999999999 99999999999999 7776655433 8899998875430
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++ ..+...++.+.|+|.++|+++++|++|+++.+. |
T Consensus 97 ------~~~~-~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G 134 (154)
T 2ju5_A 97 ------QPEE-QRQKNQELKAQYKVTGFPELVFIDAEGKQLARM-G 134 (154)
T ss_dssp ------CCHH-HHHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE-C
T ss_pred ------CChh-hHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe-c
Confidence 1222 235567899999999999999999999999988 6
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=120.05 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|||+|||+||++|+.+.|.|.+++++++++ +.++.|++|.. .+++++|+|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQT-----------------------AVYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTC-----------------------CHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999988765 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEE
Q 018808 276 STLPTLVIIGPDGKTL 291 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~ 291 (350)
.++|++++ +++|+++
T Consensus 76 ~~~Pt~~~-~~~G~~v 90 (149)
T 3gix_A 76 SYIPSTVF-FFNGQHM 90 (149)
T ss_dssp CSSSEEEE-EETTEEE
T ss_pred CccCeEEE-EECCeEE
Confidence 99999994 5899999
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=124.86 Aligned_cols=117 Identities=20% Similarity=0.276 Sum_probs=91.8
Q ss_pred hhcCccCCcee-----ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLI-----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~-----~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
-+|++||+|++ +.+|+.++|++++|| +||+|| ..|||.|..++..|.+++.+|++.+ +++++|++|+. ..-
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g-~~vigiS~Ds~-~sh 104 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN-CEVLACSIDSE-YAH 104 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT-EEEEEEESSCH-HHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC-cEEEEeeCCch-hhH
Confidence 47999999973 357889999999999 999999 7899999999999999999999885 99999999864 233
Q ss_pred HhHHhc----CC--CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KGYFSK----MP--WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~----~~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
++|..+ .+ ...+|.. .|...++++.||+. ....++|||++|+|.+.
T Consensus 105 ~~w~~~~~~~~~~~~l~fpll-sD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~ 162 (219)
T 3tue_A 105 LQWTLQDRKKGGLGTMAIPIL-ADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQI 162 (219)
T ss_dssp HHHHHSCGGGTCCCSCSSCEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhhhhHHhcCccccccccc-cCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEE
Confidence 333332 12 2344433 44556999999983 23489999999998763
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-15 Score=115.86 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=68.6
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHH--HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLV--EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~--~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
..||+++|+||++||++|+.+.|.|. ++.+++.++ +.++.|+++.. +...+++++
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~--------------------~~~~~l~~~ 83 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF--------------------DRNLELSQA 83 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT--------------------TSSHHHHHH
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc--------------------cchHHHHHH
Confidence 45889999999999999999999999 999988654 89999998420 122668999
Q ss_pred cCC---CCccEEEEECCCCCEEeccchh
Q 018808 273 FEL---STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 273 ~~v---~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|++ .++|+++++|++|+++.+..|.
T Consensus 84 ~~v~~~~~~Pt~~~~d~~G~~~~~~~g~ 111 (133)
T 3fk8_A 84 YGDPIQDGIPAVVVVNSDGKVRYTTKGG 111 (133)
T ss_dssp TTCGGGGCSSEEEEECTTSCEEEECCSC
T ss_pred hCCccCCccceEEEECCCCCEEEEecCC
Confidence 999 9999999999999999988773
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-16 Score=128.28 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=70.1
Q ss_pred eeeccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHH--HhhcCCCCccccCCc
Q 018808 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFK--RDLGSMPWLALPFKD 263 (350)
Q Consensus 189 ~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~--~~~~~~~~~~~~~~~ 263 (350)
.+.++..+||+|+|+|||+||++|+.+.+.+ .++.+.++++ +.++.|++|+..+... .+........+....
T Consensus 39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 115 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKIMENGTERTLRTVG 115 (172)
T ss_dssp HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCCEEEEEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCcccccchhhhhhhcchhhhhhhhh
Confidence 3445556799999999999999999974433 4455555443 9999999986431100 001111112222222
Q ss_pred hhHHHH-HHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 264 KSREKL-ARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 264 ~~~~~~-~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+....+ .+.|++.++|++++||++|+++.+..|.
T Consensus 116 ~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~ 150 (172)
T 3f9u_A 116 DKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAY 150 (172)
T ss_dssp HHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCS
T ss_pred hhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCC
Confidence 333333 6899999999999999999999998873
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-15 Score=121.23 Aligned_cols=120 Identities=15% Similarity=0.197 Sum_probs=99.0
Q ss_pred hhcccccCCc-eecCCC--ceeeccc-cCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEE-EEEEeCCCCHH
Q 018808 172 SVLTSHSRDF-VISSDG--RKISVSD-LEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFE-IVLISLDDEEE 245 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g--~~v~l~~-~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~-vv~v~~d~~~~ 245 (350)
-.+|..+|+| +. .+| +.+++++ ++||++||+|| +.|||.|..+++.+++.++++++.| ++ |++||+| +..
T Consensus 14 ~~vGd~aPdf~l~-~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D-~~~ 89 (171)
T 2xhf_A 14 IKVGDIIPDVLVY-EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVN-DPF 89 (171)
T ss_dssp CCTTCBCCCCEEE-CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESS-CHH
T ss_pred ccCcCCCCCeEEe-cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHH
Confidence 3578999999 55 454 8999999 59998888877 5699999999999999999999988 95 9999999 555
Q ss_pred HHHHhhcCCCC-ccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccch
Q 018808 246 SFKRDLGSMPW-LALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~ 296 (350)
..++|..+... .+||+++|.+.++++.||+. ....+|||| +|+|++.+..
T Consensus 90 ~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~ 151 (171)
T 2xhf_A 90 VMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTE 151 (171)
T ss_dssp HHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEET
T ss_pred HHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEe
Confidence 56666654431 27999999999999999973 346889998 9999998865
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=116.03 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=77.5
Q ss_pred cccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 176 SHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 176 ~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
.++++. +.+.+++.+......+|+++|+||++||++|+.+.|.|.++++++.++ +.++.|++|..
T Consensus 33 ~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~----------- 98 (148)
T 3p2a_A 33 HSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAE----------- 98 (148)
T ss_dssp CBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------
T ss_pred CccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCC-----------
Confidence 344444 456666666554567899999999999999999999999999998754 89999988754
Q ss_pred CCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 255 PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++.++|+|.++|+++++ ++|+++.++.|
T Consensus 99 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G 127 (148)
T 3p2a_A 99 ------------PALSTRFRIRSIPTIMLY-RNGKMIDMLNG 127 (148)
T ss_dssp ------------HHHHHHTTCCSSSEEEEE-ETTEEEEEESS
T ss_pred ------------HHHHHHCCCCccCEEEEE-ECCeEEEEEeC
Confidence 458899999999999999 79999988777
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=138.05 Aligned_cols=199 Identities=16% Similarity=0.230 Sum_probs=118.6
Q ss_pred ccCCceeecCCCC-Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 25 RSNGDQVKLDSLK-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 25 ~~~g~~~~l~~~~-gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
.++++.+....+. ++ ++|+||++||++|+.+.|.|.++++++++. ..+.++.|+++.+.
T Consensus 16 ~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~------------------ 77 (519)
T 3t58_A 16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET------------------ 77 (519)
T ss_dssp EECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG------------------
T ss_pred ECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc------------------
Confidence 3455555443333 47 999999999999999999999999999862 25999999987532
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECC---CCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhccccc
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDE---NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHS 178 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~---~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 178 (350)
+..+++.|+|.++|+++++++ +|+.+.. ..+. .+.+.+.+.+...... .. ..-....
T Consensus 78 ----~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~-------~~g~----~~~~~L~~~l~~~l~~---~~--~~~P~~~ 137 (519)
T 3t58_A 78 ----NSAVCREFNIAGFPTVRFFQAFTKNGSGATL-------PGAG----ANVQTLRMRLIDALES---HR--DTWPPAC 137 (519)
T ss_dssp ----GHHHHHHTTCCSBSEEEEECTTCCSCCCEEE-------CCSS----CCHHHHHHHHHHHHTT---CC--SCCCTTC
T ss_pred ----cHHHHHHcCCcccCEEEEEcCcccCCCceeE-------ecCC----CCHHHHHHHHHHHHhh---cc--ccCCCCC
Confidence 248999999999999999986 5553321 1221 2344444444322111 00 0000001
Q ss_pred CCceecCCCceee--ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCC
Q 018808 179 RDFVISSDGRKIS--VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 256 (350)
Q Consensus 179 p~f~~~~~g~~v~--l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 256 (350)
|.+ ...+.+.+. ++.-..+++++.|....- ....++...+.... .+.+-.| .+
T Consensus 138 p~l-~~it~~~l~~~l~~~~~~~vallF~~~~s-------~~~~~~~ldl~~~~-~v~v~~v-~~--------------- 192 (519)
T 3t58_A 138 PPL-EPAKLNDIDGFFTRNKADYLALVFEREDS-------YLGREVTLDLSQYH-AVAVRRV-LN--------------- 192 (519)
T ss_dssp CCC-SBCCHHHHTTGGGSCCCSEEEEEEECTTC-------CHHHHHHHHTTTCT-TEEEEEE-ET---------------
T ss_pred Ccc-CcCCHHHHHHHhccCCCCeEEEEecCCch-------HHHHHHHHHhhccC-CeeEEEe-cC---------------
Confidence 111 011111110 111234677777775531 13344555554331 1443222 22
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
.+.++.++|||..+|++++|+++|++....
T Consensus 193 --------~~~~l~~kfgV~~~Pslvl~~~nGk~~~~~ 222 (519)
T 3t58_A 193 --------TESDLVNKFGVTDFPSCYLLLRNGSVSRVP 222 (519)
T ss_dssp --------TCHHHHHHHTCCCSSEEEEEETTSCEEECC
T ss_pred --------chHHHHHHcCCCCCCeEEEEeCCCceeecc
Confidence 236789999999999999999999876443
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=122.51 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=64.9
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
.+++++||+++|+|||+|||||+.+.|.|.+++++++ + +.++.|+.|.+ .+++
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~--v~~~~v~~d~~-----------------------~~~~ 100 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--N--IELAIISKGRA-----------------------EDDL 100 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--T--EEEEEECHHHH-----------------------HHHT
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--cEEEEEECCCC-----------------------HHHH
Confidence 3466789999999999999999999999999998764 2 88998877632 3345
Q ss_pred HHcC---CCCccEEEEECCCCCEEeccch
Q 018808 271 RYFE---LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 271 ~~~~---v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.|+ +.++||++++|++|+++.+..+
T Consensus 101 ~~~~~~~v~~iPt~i~~~~~G~~~~~~g~ 129 (167)
T 1z6n_A 101 RQRLALERIAIPLVLVLDEEFNLLGRFVE 129 (167)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEEEES
T ss_pred HHHHHcCCCCcCeEEEECCCCCEEEEEcC
Confidence 5565 9999999999999999887644
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=110.62 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=66.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+++++|++
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDEN-----------------------QETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------------CSHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 6899999999999999999999999999999753 99999998854 347899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~~G 89 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVETSVG 89 (112)
T ss_dssp CSBSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-eCCEEEEEEeC
Confidence 999999999 99999988877
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=113.68 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=66.9
Q ss_pred CEEEEEEeccCC--ccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 198 KTIGLYFSMSSY--KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 198 k~vlv~f~~~~C--~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+++||+|||+|| ++|+.+.|.|.++.++|.++ +.++.|++|.+ .+++.+|||
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~-----------------------~~la~~ygV 87 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAE-----------------------RGLMARFGV 87 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGH-----------------------HHHHHHHTC
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 499999999999 99999999999999999765 99999988743 669999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|.
T Consensus 88 ~siPTlilF-kdG~~v~~~vG~ 108 (137)
T 2qsi_A 88 AVCPSLAVV-QPERTLGVIAKI 108 (137)
T ss_dssp CSSSEEEEE-ECCEEEEEEESC
T ss_pred ccCCEEEEE-ECCEEEEEEeCC
Confidence 999999999 999999999884
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=112.94 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=65.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.. .+++++|++
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKE-----------------------QELAGAFGI 90 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 4689999999999999999999999999998754 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++|++|+++ +..|
T Consensus 91 ~~~Pt~~~~~~~G~~~-~~~G 110 (136)
T 2l5l_A 91 RSIPSILFIPMEGKPE-MAQG 110 (136)
T ss_dssp CSSCEEEEECSSSCCE-EEES
T ss_pred CCCCEEEEECCCCcEE-EEeC
Confidence 9999999999999987 4444
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=111.44 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=65.7
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++|+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. .+++++|+
T Consensus 29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~~~~ 81 (116)
T 3qfa_C 29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVASECE 81 (116)
T ss_dssp HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTT-----------------------HHHHHHTT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHcC
Confidence 3688999999999999999999999999888753 88999988754 56899999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|+++++ ++|+++.+..|
T Consensus 82 v~~~Pt~~~~-~~G~~~~~~~G 102 (116)
T 3qfa_C 82 VKSMPTFQFF-KKGQKVGEFSG 102 (116)
T ss_dssp CCSSSEEEEE-SSSSEEEEEES
T ss_pred CccccEEEEE-eCCeEEEEEcC
Confidence 9999999999 89999988877
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-15 Score=115.71 Aligned_cols=95 Identities=23% Similarity=0.409 Sum_probs=75.8
Q ss_pred hhcCccCCce-e-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFL-I-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~-~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
-.|.++|+|+ + +.++-...+++.+|| ++|+||++||++|+.+.|.+ .++.++++ ++.++.|+++...
T Consensus 5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~---- 77 (134)
T 2fwh_A 5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTAND---- 77 (134)
T ss_dssp -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCC----
T ss_pred cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCc----
Confidence 4578899996 4 346666777888899 99999999999999999998 88888885 3889999887542
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
+....+++.|++.++|+++++|++|+++
T Consensus 78 ----------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 78 ----------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp ----------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred ----------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 2345899999999999999999999986
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-15 Score=122.10 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=96.9
Q ss_pred cccccCCc-eec--C---------CC----ceeeccc-cCCCEEEEEEe-ccCCccCh-hhHHHHHHHHHHH-hcCCCcE
Q 018808 174 LTSHSRDF-VIS--S---------DG----RKISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKL-KGKGESF 233 (350)
Q Consensus 174 ~~~~~p~f-~~~--~---------~g----~~v~l~~-~~gk~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~-~~~~~~~ 233 (350)
+|..+|+| +.+ . +| +.+++++ ++||++||+|| +.|||.|. .+++.+++.+.++ ++.| +
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~ 80 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--F 80 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--C
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--C
Confidence 57889999 655 3 67 7999998 69988777665 67999999 9999999999999 8888 8
Q ss_pred E-EEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccch
Q 018808 234 E-IVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 234 ~-vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~ 296 (350)
+ |++||.| +....++|..+...-+||+++|.+.++++.||+. ....+|||| +|+|++.+..
T Consensus 81 ~~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~ 153 (182)
T 1xiy_A 81 DDIYCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQE 153 (182)
T ss_dssp SEEEEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred cEEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEe
Confidence 4 9999999 6666667766555226999999999999999973 257889998 9999998764
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-15 Score=116.04 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.. .+++++|+|
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 76 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATN-----------------------PWTAEKYGV 76 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcC-----------------------HhHHHHCCC
Confidence 3789999999999999999999999999999865 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCeeecCCC
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNG 347 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 347 (350)
.++|+++++ ++|+++.+..|... ..+..+.|.+.............-+..-...||-+|.|
T Consensus 77 ~~~Pt~~~~-~~G~~~~~~~G~~~----------~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (140)
T 3hz4_A 77 QGTPTFKFF-CHGRPVWEQVGQIY----------PSILKNAVRDMLQHGEECIRKSTPVGQDITGYVEGHHH 137 (140)
T ss_dssp CEESEEEEE-ETTEEEEEEESSCC----------HHHHHHHHHHHHHHHHHHHHTSBC--------------
T ss_pred CcCCEEEEE-eCCcEEEEEcCCCC----------HHHHHHHHHHHhcccccCcccccccCccceeeeccccc
Confidence 999999999 89999988877321 02223334444433333333334455556666766654
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=111.34 Aligned_cols=89 Identities=20% Similarity=0.438 Sum_probs=73.7
Q ss_pred CccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 17 SSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 17 ~~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
.++|++. ..+++.++....+|+ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 22 ~~~~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~------------ 86 (128)
T 3ul3_B 22 KKVPRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNE------------ 86 (128)
T ss_dssp ----CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCH------------
T ss_pred ccCCccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCH------------
Confidence 3455555 456677888888999 99999999999999999999999999975 5999999887654
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 87 ------------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 111 (128)
T 3ul3_B 87 ------------SLARKFSVKSLPTIILL-KNKTMLAR 111 (128)
T ss_dssp ------------HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ------------HHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence 68999999999999999 78988764
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=113.81 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=67.8
Q ss_pred eeeccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchh
Q 018808 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 265 (350)
Q Consensus 189 ~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
.+.+++.+||+++|+||++||++|+.+.|.+ ..+.+.+... +.++.|+++.+ .
T Consensus 19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~---------------------~ 74 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKG---------------------E 74 (130)
T ss_dssp HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSST---------------------T
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCc---------------------c
Confidence 3444456789999999999999999999998 6666665543 77777776631 2
Q ss_pred HHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 266 REKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 266 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
..+++++|++.++|+++++|++|+++.+..|
T Consensus 75 ~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 75 GVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred hHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 3678999999999999999999999998777
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=109.31 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=65.7
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++|+++|+||++||++|+.+.|.+.++++++++ +.++.|++|.. .+++++|+
T Consensus 22 ~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~l~~~~~ 74 (109)
T 3f3q_A 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDEL-----------------------GDVAQKNE 74 (109)
T ss_dssp TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHcC
Confidence 3589999999999999999999999999998853 78899988754 55889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|++++++ +|+++.+..|
T Consensus 75 v~~~Pt~~~~~-~G~~~~~~~G 95 (109)
T 3f3q_A 75 VSAMPTLLLFK-NGKEVAKVVG 95 (109)
T ss_dssp CCSSSEEEEEE-TTEEEEEEES
T ss_pred CCccCEEEEEE-CCEEEEEEeC
Confidence 99999999996 9999998877
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=107.79 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=70.7
Q ss_pred CCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchh
Q 018808 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 265 (350)
Q Consensus 186 ~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
+++.+.....++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 10 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---------------------- 64 (109)
T 3tco_A 10 TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDEN---------------------- 64 (109)
T ss_dssp CTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC----------------------
T ss_pred cHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccC----------------------
Confidence 33434333335899999999999999999999999999999764 88999988754
Q ss_pred HHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 266 REKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 266 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|++.++|+++++ ++|+++.+..|
T Consensus 65 -~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g 93 (109)
T 3tco_A 65 -QKIADKYSVLNIPTTLIF-VNGQLVDSLVG 93 (109)
T ss_dssp -HHHHHHTTCCSSSEEEEE-ETTEEEEEEES
T ss_pred -HHHHHhcCcccCCEEEEE-cCCcEEEeeec
Confidence 458899999999999999 99999998877
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=113.25 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=64.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.|.++++++.++ +.++.|++|.. .+++++|+|
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~-----------------------~~~~~~~~i 75 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV-----------------------PDFNKMYEL 75 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999999654 99999998854 236789999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 76 ~~~Pt~~~~-~~G~~v~~~~g 95 (142)
T 1qgv_A 76 YDPCTVMFF-FRNKHIMIDLG 95 (142)
T ss_dssp CSSCEEEEE-ETTEEEEEECC
T ss_pred CCCCEEEEE-ECCcEEEEecC
Confidence 999999999 68998876554
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-14 Score=106.27 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=66.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|+++.+ .+++++|++
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 72 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-----------------------PGTAPKYGI 72 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------TTHHHHTTC
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999998754 99999998754 347889999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~~G 92 (108)
T 2trx_A 73 RGIPTLLLF-KNGEVAATKVG 92 (108)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred cccCEEEEE-eCCEEEEEEec
Confidence 999999999 89999988776
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=112.50 Aligned_cols=82 Identities=26% Similarity=0.460 Sum_probs=73.3
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
+.+|...+++.+.|+ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 38 ~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~-------------------- 95 (141)
T 3hxs_A 38 DYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEP-------------------- 95 (141)
T ss_dssp CCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH--------------------
T ss_pred ccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCH--------------------
Confidence 457888889999999 99999999999999999999999999975 4889999987664
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.|++.++|++++++++|+++.
T Consensus 96 ----~~~~~~~v~~~Pt~~~~~~~g~~~~ 120 (141)
T 3hxs_A 96 ----ELARDFGIQSIPTIWFVPMKGEPQV 120 (141)
T ss_dssp ----HHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred ----HHHHHcCCCCcCEEEEEeCCCCEEE
Confidence 6899999999999999999998763
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=105.94 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=66.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+++++|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDEN-----------------------PSTAAKYEV 71 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcC-----------------------HHHHHhCCC
Confidence 7899999999999999999999999999999865 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 72 ~~~Pt~~~~-~~G~~~~~~~g 91 (106)
T 3die_A 72 MSIPTLIVF-KDGQPVDKVVG 91 (106)
T ss_dssp CSBSEEEEE-ETTEEEEEEES
T ss_pred cccCEEEEE-eCCeEEEEEeC
Confidence 999999999 59999988777
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=130.04 Aligned_cols=178 Identities=14% Similarity=0.138 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC----CcceEEEECCCCe
Q 018808 55 FTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGK 129 (350)
Q Consensus 55 ~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~ 129 (350)
+...+.+++++++.++ ++.|+.++.+.-. ...+.||+. ..|.+++++.++.
T Consensus 255 ~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~------------------------~~l~~~gl~~~~~~~P~~~i~~~~~~ 310 (481)
T 3f8u_A 255 WRNRVMMVAKKFLDAGHKLNFAVASRKTFS------------------------HELSDFGLESTAGEIPVVAIRTAKGE 310 (481)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEETTTTH------------------------HHHGGGTCCCCTTCSCEEEEECSSSC
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcHHHHH------------------------HHHHHcCCCcccCCCcEEEEEcCCCc
Confidence 4556777788887642 3777777654332 456778886 5899999986664
Q ss_pred EEecCCccceecccCcCCCCChH--HHHHHHHHHHHHHHhhchhhhcccccCCc----eecCCCceeecccc-CCCEEEE
Q 018808 130 VLSDGGVEIIREYGVEGYPFTVE--RIKEMKEQEERAKREQSLRSVLTSHSRDF----VISSDGRKISVSDL-EGKTIGL 202 (350)
Q Consensus 130 v~~~~~~~~~~~~~~~~~p~~~~--~i~~l~~~~~~~~~~~~~~~~~~~~~p~f----~~~~~g~~v~l~~~-~gk~vlv 202 (350)
.... . . ..+.+ .+..+........ ........+.|.. +...+|+.+..... .+|+|+|
T Consensus 311 ky~~------~----~--~~t~e~~~l~~f~~~~~~g~---~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv 375 (481)
T 3f8u_A 311 KFVM------Q----E--EFSRDGKALERFLQDYFDGN---LKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLI 375 (481)
T ss_dssp EEEC------C----S--CCCTTSHHHHHHHHHHHHTC---CCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEE
T ss_pred ccCC------C----c--ccCccHHHHHHHHHHHhcCC---cccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEE
Confidence 3321 1 0 13344 6766665543221 1111222223321 23344444433223 4899999
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEE
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 282 (350)
+|||+||++|+.+.|.+.++++++++. .++.++.|+.+.+ ++.+.|+|.++|+++
T Consensus 376 ~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~v~~~~id~~~~------------------------~~~~~~~v~~~Pt~~ 430 (481)
T 3f8u_A 376 EFYAPWCGHCKNLEPKYKELGEKLSKD-PNIVIAKMDATAN------------------------DVPSPYEVRGFPTIY 430 (481)
T ss_dssp EEECTTBHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTSS------------------------CCCTTCCCCSSSEEE
T ss_pred EEecCcChhHHHhhHHHHHHHHHhccC-CCEEEEEEECCch------------------------hhHhhCCCcccCEEE
Confidence 999999999999999999999999875 1388888887642 245689999999999
Q ss_pred EECCCCCE-Eeccch
Q 018808 283 IIGPDGKT-LHSNVA 296 (350)
Q Consensus 283 lid~~G~i-~~~~~~ 296 (350)
+++++|++ +.++.|
T Consensus 431 ~~~~~~~~~~~~~~G 445 (481)
T 3f8u_A 431 FSPANKKLNPKKYEG 445 (481)
T ss_dssp EECTTCTTSCEECCS
T ss_pred EEeCCCeEeeeEeCC
Confidence 99877763 344444
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=107.40 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=57.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.++++++. + +.++.|++|.+ .+++++|++
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~--~~~~~vd~~~~-----------------------~~l~~~~~v 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--Y--VEKIEILLQDM-----------------------QEIAGRYAV 69 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--T--EEEEEEEECCC--------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--C--ceEEEEECCCC-----------------------HHHHHhcCC
Confidence 57899999999999999999999999999883 2 99999998854 357889999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~~g 89 (105)
T 4euy_A 70 FTGPTVLLF-YNGKEILRESR 89 (105)
T ss_dssp CCCCEEEEE-ETTEEEEEEES
T ss_pred CCCCEEEEE-eCCeEEEEEeC
Confidence 999999999 69999988777
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=114.02 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCCEEEEEEeccC--CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 196 EGKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 196 ~gk~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+++|||+|||+| |++|+.+.|.|.++.++|.++. +.|+.|++|. ..+++.+|
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvDe-----------------------~~~lA~~y 87 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLEQ-----------------------SEAIGDRF 87 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHHH-----------------------HHHHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECCC-----------------------CHHHHHHc
Confidence 4567889999999 9999999999999999986542 7888887763 36799999
Q ss_pred CCCCccEEEEECCCCCEEeccchh
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
||.++||++++ ++|+++.+..|.
T Consensus 88 gV~sIPTlilF-k~G~~v~~~~G~ 110 (140)
T 2qgv_A 88 GAFRFPATLVF-TGGNYRGVLNGI 110 (140)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESC
T ss_pred CCccCCEEEEE-ECCEEEEEEecC
Confidence 99999999999 999999999883
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=106.73 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=63.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++++++|+||++||++|+.+.|.+.++++++++ +.++.|++++. ..+++++|+
T Consensus 22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~----------------------~~~~~~~~~ 75 (111)
T 2pu9_C 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQE----------------------NKTLAKELG 75 (111)
T ss_dssp CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST----------------------THHHHHHHC
T ss_pred cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcc----------------------hHHHHHHcC
Confidence 4688999999999999999999999999998863 88999988731 156889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|++ +++++|+++.+..|
T Consensus 76 v~~~Pt~-~~~~~G~~~~~~~G 96 (111)
T 2pu9_C 76 IRVVPTF-KILKENSVVGEVTG 96 (111)
T ss_dssp CSBSSEE-EEESSSSEEEEEES
T ss_pred CCeeeEE-EEEeCCcEEEEEcC
Confidence 9999994 55599999988776
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-14 Score=106.74 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=65.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+++++|++
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 75 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDEN-----------------------PGTAAKYGV 75 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCC-----------------------HHHHHhCCC
Confidence 4789999999999999999999999999998754 89999998854 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 76 ~~~Pt~~~~-~~G~~~~~~~G 95 (112)
T 1t00_A 76 MSIPTLNVY-QGGEVAKTIVG 95 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-eCCEEEEEEeC
Confidence 999998888 89999988777
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=106.83 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=66.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++.++++++ +.++.|++|.+ .+++++|++
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~-----------------------~~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN-----------------------PETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCC-----------------------HHHHHHcCC
Confidence 5689999999999999999999999999998754 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~~G 89 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVKQLIG 89 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred ccccEEEEE-eCCeEEEEEec
Confidence 999999999 99999988776
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=105.92 Aligned_cols=71 Identities=28% Similarity=0.593 Sum_probs=62.0
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
+..++ ++|+||++||++|+.+.|.+.++.+.++ ++.++.|++|... .+++.|
T Consensus 17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~------------------------~l~~~~ 69 (105)
T 3zzx_A 17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECE------------------------DIAQDN 69 (105)
T ss_dssp HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEETTTCH------------------------HHHHHT
T ss_pred hcCCCEEEEEEECCCCCCccCCCcchhhhhhccC---CeEEEEEecccCH------------------------HHHHHc
Confidence 34578 9999999999999999999999998875 4888889887664 689999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
+|+++||++++ ++|+.+.+
T Consensus 70 ~V~~~PT~~~~-~~G~~v~~ 88 (105)
T 3zzx_A 70 QIACMPTFLFM-KNGQKLDS 88 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEEE
T ss_pred CCCeecEEEEE-ECCEEEEE
Confidence 99999999998 79998874
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=111.04 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=70.7
Q ss_pred ecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCC
Q 018808 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFK 262 (350)
Q Consensus 183 ~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 262 (350)
...++..+......+|++||+||++||++|+.+.|.|.++++++.+.+.++.++.|+++..
T Consensus 20 ~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------- 80 (140)
T 2dj1_A 20 WVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA------------------- 80 (140)
T ss_dssp EECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC-------------------
T ss_pred EEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc-------------------
Confidence 3445554444334679999999999999999999999999999987654588888877643
Q ss_pred chhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 263 DKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 263 ~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|+|.++|+++++ ++|+ +.++.|
T Consensus 81 ----~~~~~~~~v~~~Pt~~~~-~~G~-~~~~~g 108 (140)
T 2dj1_A 81 ----SMLASKFDVSGYPTIKIL-KKGQ-AVDYDG 108 (140)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-ETTE-EEECCS
T ss_pred ----HHHHHHCCCCccCeEEEE-ECCc-EEEcCC
Confidence 558899999999999999 8898 555555
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-14 Score=126.12 Aligned_cols=109 Identities=22% Similarity=0.271 Sum_probs=86.8
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
.++|+|++ +.+|++++|++++|| ++|+|| ..|||.|..+++.|.+ ...+ ++++++|+.| +.+..++|.+++
T Consensus 2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~-~~~v~gis~D-~~~~~~~f~~~~ 75 (322)
T 4eo3_A 2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFE-KAQVVGISRD-SVEALKRFKEKN 75 (322)
T ss_dssp CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCT-TEEEEEEESC-CHHHHHHHHHHH
T ss_pred CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhC-CCEEEEEeCC-CHHHHHHHHHhh
Confidence 46899988 689999999999999 999999 4799999998887753 2223 5999999986 566778888887
Q ss_pred CCcccccCChhhHHHHHhhcCCC----CcceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~v~~~ 133 (350)
+....-..| ....+++.||+. .+|+++|||++|+|++.
T Consensus 76 ~l~fp~l~D--~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~ 117 (322)
T 4eo3_A 76 DLKVTLLSD--PEGILHEFFNVLENGKTVRSTFLIDRWGFVRKE 117 (322)
T ss_dssp TCCSEEEEC--TTCHHHHHTTCEETTEECCEEEEECTTSBEEEE
T ss_pred CCceEEEEc--CchHHHHhcCCCCCCcCccEEEEECCCCEEEEE
Confidence 753333444 445899999993 57899999999999863
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=104.32 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=65.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+++++|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES-----------------------PNVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC-----------------------HHHHHHCCC
Confidence 4689999999999999999999999999998754 89999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 72 ~~~Pt~~~~-~~G~~~~~~~G 91 (107)
T 1dby_A 72 RSIPTIMVF-KGGKKCETIIG 91 (107)
T ss_dssp CSSCEEEEE-SSSSEEEEEES
T ss_pred CcCCEEEEE-eCCEEEEEEeC
Confidence 999998888 89999988777
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=110.72 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=73.0
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
.+++++. +.+|........+|+ ++|+||++||++|+.+.|.|.+++++++. ++.++.|+.+.+.
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~d~------------ 70 (126)
T 2l57_A 5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG--KFNIYYARLEEEK------------ 70 (126)
T ss_dssp CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS--SCEEEEEETTSSH------------
T ss_pred ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCc------------
Confidence 4455554 345544445667888 99999999999999999999999999873 5899999844221
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+..+++.|++.++|++++++++|+++.+
T Consensus 71 ----------~~~~~~~~~v~~~Pt~~~~~~~G~~~~~ 98 (126)
T 2l57_A 71 ----------NIDLAYKYDANIVPTTVFLDKEGNKFYV 98 (126)
T ss_dssp ----------HHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred ----------hHHHHHHcCCcceeEEEEECCCCCEEEE
Confidence 2378999999999999999999998764
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=110.67 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=65.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+++++|++
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 92 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQN-----------------------PGTAPKYGI 92 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------CTTSGGGTC
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 5789999999999999999999999999998754 99999998854 236789999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 93 ~~~Pt~~~~-~~G~~~~~~~G 112 (128)
T 2o8v_B 93 RGIPTLLLF-KNGEVAATKVG 112 (128)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CccCEEEEE-eCCEEEEEEcC
Confidence 999999999 99999988776
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=108.25 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++++++++. +.++.|++|.. .+++++|+|
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~v 87 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH-----------------------QSLGGQYGV 87 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 4689999999999999999999999999998764 88999988754 558899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++++|+++.+..|
T Consensus 88 ~~~Pt~~~~~~~~~~~~~~~G 108 (130)
T 2dml_A 88 QGFPTIKIFGANKNKPEDYQG 108 (130)
T ss_dssp CSSSEEEEESSCTTSCEECCS
T ss_pred CccCEEEEEeCCCCeEEEeec
Confidence 999999999988885666555
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-14 Score=114.66 Aligned_cols=116 Identities=12% Similarity=0.177 Sum_probs=92.4
Q ss_pred hhcCccCCceec-cCC----------ceeecCCC-CCc--EEEEEecCCChhhhh-hhHHHHHHHHHhccCCCE-EEEEE
Q 018808 14 LLSSSARDFLIR-SNG----------DQVKLDSL-KGK--IGLYFSASWCGPCQR-FTPILAEVYNELSRQGDF-EVIFV 77 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g----------~~~~l~~~-~gk--~~v~F~~~~C~~C~~-~~~~l~~l~~~~~~~~~~-~~v~i 77 (350)
.+|+++|++++. .++ ++++|+++ +|| ++++||+.|||.|.. +++.|.+.+++|++++ + ++++|
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g-~d~VigI 89 (176)
T 4f82_A 11 QVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG-IDEIWCV 89 (176)
T ss_dssp CTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred hcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC-CCEEEEE
Confidence 469999998773 322 57999997 998 566788999999999 9999999999999886 8 99999
Q ss_pred ECCCCHHHHHhHHhcCCCc-ccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 78 SGDEDDEAFKGYFSKMPWL-AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 78 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
+.|+ ....++|.+..+.. .++.. .|.+.++++.||+. ..+.++|| ++|+|++.
T Consensus 90 S~D~-~~~~~~f~~~~~l~~~f~lL-sD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~ 154 (176)
T 4f82_A 90 SVND-AFVMGAWGRDLHTAGKVRMM-ADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTL 154 (176)
T ss_dssp ESSC-HHHHHHHHHHTTCTTTSEEE-ECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEE
T ss_pred eCCC-HHHHHHHHHHhCCCCCceEE-EcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEE
Confidence 9984 56788888887754 24433 23346899999873 24889999 99999885
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-14 Score=106.35 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=64.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++|+++|+||++||++|+.+.|.+.++++++...+ +.++.|+++.. .++.++|++
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~-----------------------~~~~~~~~v 74 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADEN-----------------------SEISELFEI 74 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccC-----------------------HHHHHHcCC
Confidence 47899999999999999999999999999875444 99999998854 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 75 ~~~Pt~~~~-~~G~~~~~~~G 94 (112)
T 3d6i_A 75 SAVPYFIII-HKGTILKELSG 94 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEECS
T ss_pred CcccEEEEE-ECCEEEEEecC
Confidence 999999999 79999988777
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=106.75 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=65.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.|.++++++.++ +.++.|++|.+ .+++++|++
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~v 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDH-----------------------TDLAIEYEV 83 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTT-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 4689999999999999999999999999988654 89999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 84 ~~~Pt~~~~-~~G~~~~~~~G 103 (119)
T 1w4v_A 84 SAVPTVLAM-KNGDVVDKFVG 103 (119)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-eCCcEEEEEcC
Confidence 999999999 89999988776
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=105.18 Aligned_cols=74 Identities=14% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.++.++++++ +.++.|++|.+ .++.++|++
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~-----------------------~~~~~~~~v 77 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN-----------------------PTTVKKYKV 77 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC-----------------------HHHHHHTTC
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCC-----------------------HHHHHHcCC
Confidence 5789999999999999999999999999998754 89999998854 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~~g 97 (115)
T 1thx_A 78 EGVPALRLV-KGEQILDSTEG 97 (115)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CceeEEEEE-cCCEEEEEecC
Confidence 999999999 99999988776
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=104.55 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=66.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.+++++++++ +.++.|++|.. .+++++|++
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 74 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEE-----------------------KTLFQRFSL 74 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcC-----------------------hhHHHhcCC
Confidence 4689999999999999999999999999998764 89999998854 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 75 ~~~Pt~~~~-~~g~~~~~~~g 94 (111)
T 3gnj_A 75 KGVPQILYF-KDGEYKGKMAG 94 (111)
T ss_dssp CSSCEEEEE-ETTEEEEEEES
T ss_pred CcCCEEEEE-ECCEEEEEEec
Confidence 999999999 89999988777
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=112.42 Aligned_cols=74 Identities=12% Similarity=0.270 Sum_probs=66.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++++||+||++||++|+.+.|.++++++++.++ +.++.|++|.+ .++.++|+|
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~i 116 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAH-----------------------PAVAGRHRI 116 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTS-----------------------THHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCcc-----------------------HHHHHHcCC
Confidence 5789999999999999999999999999999764 99999998854 358899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 117 ~~~Pt~~~~-~~G~~~~~~~G 136 (155)
T 2ppt_A 117 QGIPAFILF-HKGRELARAAG 136 (155)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcCCEEEEE-eCCeEEEEecC
Confidence 999999999 89999988777
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=103.15 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.+++++++++ +.++.|+++.+ .+++++|++
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 72 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDN-----------------------PETPNAYQV 72 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTC-----------------------CHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCC-----------------------HHHHHhcCC
Confidence 5789999999999999999999999999999753 99999998754 357899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~~G 92 (107)
T 2i4a_A 73 RSIPTLMLV-RDGKVIDKKVG 92 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CccCEEEEE-eCCEEEEEecC
Confidence 999999999 99999988776
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-14 Score=114.74 Aligned_cols=101 Identities=23% Similarity=0.474 Sum_probs=77.8
Q ss_pred cCccCCceeccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 16 SSSARDFLIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 16 g~~~p~f~~~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
+...+++ +..++.+++++.+|| ++|+|| ++||++|+.+.|.| .++.+.+.. ++.++.|+++....
T Consensus 27 ~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~------ 96 (154)
T 2ju5_A 27 AAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNH------ 96 (154)
T ss_dssp CCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCC------
T ss_pred ccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccC------
Confidence 4455556 445677888888999 999999 99999999999999 777665543 48888888775531
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++...+.+..+++.|++.++|+++++|++|+++.+
T Consensus 97 -------~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~ 132 (154)
T 2ju5_A 97 -------QPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLAR 132 (154)
T ss_dssp -------CCHHHHHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred -------CChhhHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence 111113455689999999999999999999999874
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-15 Score=117.60 Aligned_cols=87 Identities=18% Similarity=0.352 Sum_probs=70.9
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD 263 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 263 (350)
.+.+++...+||++||+||++||++|+.+.|.+ .++.+.+..+ +.++.|+++.+
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-------------------- 65 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTP-------------------- 65 (130)
Confidence 556777778899999999999999999999999 8888777653 77888777532
Q ss_pred hhHHHHHHHcCCCCccEEEEECC-CCCE--Eeccchh
Q 018808 264 KSREKLARYFELSTLPTLVIIGP-DGKT--LHSNVAE 297 (350)
Q Consensus 264 ~~~~~~~~~~~v~~~P~~~lid~-~G~i--~~~~~~~ 297 (350)
...++.+.|++.++|+++++|+ +|++ +.+..|.
T Consensus 66 -~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~ 101 (130)
T 2lst_A 66 -EGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGS 101 (130)
Confidence 1256889999999999999996 5998 7777764
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-14 Score=111.27 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=62.6
Q ss_pred ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 192 l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
+++.+||+++|+||++||++|+.+.|.+.++.+++ + +.++.|++|.. .++++
T Consensus 35 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~--v~~~~vd~~~~-----------------------~~l~~ 86 (133)
T 3cxg_A 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---Y--VTLVDIDVDIH-----------------------PKLND 86 (133)
T ss_dssp HTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---E--CEEEEEETTTC-----------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---C--EEEEEEeccch-----------------------HHHHH
Confidence 34556899999999999999999999998887665 2 77888877643 55889
Q ss_pred HcCCCCccEEEEE-CCCCC--EEeccch
Q 018808 272 YFELSTLPTLVII-GPDGK--TLHSNVA 296 (350)
Q Consensus 272 ~~~v~~~P~~~li-d~~G~--i~~~~~~ 296 (350)
+|+|.++|+++++ |++|+ ++.+..|
T Consensus 87 ~~~v~~~Pt~~~~~~~~g~g~~~~~~~G 114 (133)
T 3cxg_A 87 QHNIKALPTFEFYFNLNNEWVLVHTVEG 114 (133)
T ss_dssp HTTCCSSSEEEEEEEETTEEEEEEEEES
T ss_pred hcCCCCCCEEEEEEecCCCeEEEEEEcC
Confidence 9999999999999 44665 8888776
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=106.29 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=65.4
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++|+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.. .+++++|+
T Consensus 36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~vd~d~~-----------------------~~l~~~~~ 88 (124)
T 1xfl_A 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--N--VLFLKVDTDEL-----------------------KSVASDWA 88 (124)
T ss_dssp HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTS-----------------------HHHHHHTT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--cEEEEEECccC-----------------------HHHHHHcC
Confidence 358899999999999999999999999999886 3 99999988754 45889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|+++++ ++|+++.+..|
T Consensus 89 v~~~Pt~~~~-~~G~~~~~~~G 109 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDKVVG 109 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEEEES
T ss_pred CCccCEEEEE-ECCEEEEEEeC
Confidence 9999998888 89999988776
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=105.74 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=66.9
Q ss_pred eecCCCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcC--CCcEEEEEEeCCCCHHHHHHhhcCCCCcc
Q 018808 182 VISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK--GESFEIVLISLDDEEESFKRDLGSMPWLA 258 (350)
Q Consensus 182 ~~~~~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 258 (350)
+..+++..+..... .+++++|+||++||++|+.+.|.+.++++++... ..++.++.|+++..
T Consensus 17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~--------------- 81 (127)
T 3h79_A 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY--------------- 81 (127)
T ss_dssp CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC---------------
T ss_pred eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc---------------
Confidence 33445554443333 4789999999999999999999999999987632 23599999988754
Q ss_pred ccCCchhHHHHHHHcCCCCccEEEEECCCCCE
Q 018808 259 LPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290 (350)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i 290 (350)
.+++++|+|.++|+++++++.+++
T Consensus 82 --------~~l~~~~~v~~~Pt~~~~~~g~~~ 105 (127)
T 3h79_A 82 --------PDVIERMRVSGFPTMRYYTRIDKQ 105 (127)
T ss_dssp --------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred --------HhHHHhcCCccCCEEEEEeCCCCC
Confidence 568999999999999999766654
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-14 Score=111.34 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=66.3
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..+||+++|+||++||++|+.+.|.+++++++++ + +.++.|++|.. .++.++|
T Consensus 43 ~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~v~~~~~-----------------------~~~~~~~ 95 (139)
T 3d22_A 43 SRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--S--LMFLVIDVDEL-----------------------SDFSASW 95 (139)
T ss_dssp HHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHT
T ss_pred hhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--CEEEEEeCccc-----------------------HHHHHHc
Confidence 3468999999999999999999999999999884 3 88999998754 5588999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.++|+++++ ++|+++.+..|
T Consensus 96 ~v~~~Pt~~~~-~~G~~~~~~~G 117 (139)
T 3d22_A 96 EIKATPTFFFL-RDGQQVDKLVG 117 (139)
T ss_dssp TCCEESEEEEE-ETTEEEEEEES
T ss_pred CCCcccEEEEE-cCCeEEEEEeC
Confidence 99999999988 99999988777
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=104.09 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+|+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.. .++.+.|++.
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV-----------------------AAVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT-----------------------HHHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---eEEEEEECCch-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999998753 89999988753 5688999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+++++ ++|+++.+..|
T Consensus 78 ~~Pt~~~~-~~G~~~~~~~G 96 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADDLVG 96 (112)
T ss_dssp BSSEEEEE-ETTEEEEEEES
T ss_pred cccEEEEE-ECCeEEEEEcC
Confidence 99998777 89999988776
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=106.84 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcC-CCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+++++|+||++||++|+.+.|.+.++++++.+. ..++.++.|+++.. .+++++|+
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~l~~~~~ 80 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN-----------------------QVLASRYG 80 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC-----------------------CHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC-----------------------HHHHHhCC
Confidence 4689999999999999999999999999999731 01299999988753 45889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|+++++++ |+++.+..|
T Consensus 81 v~~~Pt~~~~~~-g~~~~~~~G 101 (133)
T 1x5d_A 81 IRGFPTIKIFQK-GESPVDYDG 101 (133)
T ss_dssp CCSSSEEEEEET-TEEEEEECS
T ss_pred CCeeCeEEEEeC-CCceEEecC
Confidence 999999999976 888877776
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=104.51 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++......+.++.|+++.. .+++++|++.
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~l~~~~~v~ 77 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE-----------------------RNICSKYSVR 77 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC-----------------------HHHHHHTTCC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc-----------------------HhHHHhcCCC
Confidence 78999999999999999999999999988765423489999988754 4588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+++++ ++|+++.+..|
T Consensus 78 ~~Pt~~~~-~~g~~~~~~~g 96 (111)
T 3uvt_A 78 GYPTLLLF-RGGKKVSEHSG 96 (111)
T ss_dssp SSSEEEEE-ETTEEEEEECS
T ss_pred cccEEEEE-eCCcEEEeccC
Confidence 99999999 89999888777
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=104.44 Aligned_cols=73 Identities=16% Similarity=0.327 Sum_probs=64.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++|+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.+ .+++++|++
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~-----------------------~~l~~~~~v 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDES-----------------------PDIAKECEV 81 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHCCC
Confidence 478999999999999999999999999988853 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 82 ~~~Pt~~~~-~~G~~~~~~~G 101 (114)
T 2oe3_A 82 TAMPTFVLG-KDGQLIGKIIG 101 (114)
T ss_dssp CSBSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-eCCeEEEEEeC
Confidence 999998887 99999988777
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=102.58 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=65.7
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++|+++|.||++||++|+.+.|.+.++++++++ +.++.|++|.. .++.++|+
T Consensus 18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~ 70 (105)
T 3m9j_A 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVASESE 70 (105)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhh-----------------------HHHHHHcC
Confidence 3688999999999999999999999999998853 88999988754 45889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|+++++ ++|+++.+..|
T Consensus 71 v~~~Pt~~~~-~~g~~~~~~~g 91 (105)
T 3m9j_A 71 VKSMPTFQFF-KKGQKVGEFSG 91 (105)
T ss_dssp CCBSSEEEEE-ETTEEEEEEES
T ss_pred CCcCcEEEEE-ECCeEEEEEeC
Confidence 9999999999 89999988777
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=105.28 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. .++.++|++
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL-----------------------KPIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 578999999999999999999999999988763 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 86 ~~~Pt~~~~-~~G~~~~~~~G 105 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKDRVVG 105 (122)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-eCCEEEEEEeC
Confidence 999998887 89999988777
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=102.63 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=64.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++|+++|+||++||++|+.+.|.+.+++++++ + +.++.|++|.+ .+++++|++
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~--~~~~~vd~~~~-----------------------~~~~~~~~v 72 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--Q--AVFLEVDVHQC-----------------------QGTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--C--cEEEEEECccC-----------------------HHHHHhcCC
Confidence 57899999999999999999999999999983 2 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~~G 92 (107)
T 1gh2_A 73 SATPTFQFF-RNKVRIDQYQG 92 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-ECCeEEEEEeC
Confidence 999999999 89999988777
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=117.67 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=73.8
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccC
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (350)
+.+.++..+......+++++|+||++||++|+.+.|.+.++++++++. +.++.|+++..
T Consensus 99 v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~------------------ 157 (210)
T 3apq_A 99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDD------------------ 157 (210)
T ss_dssp SEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC------------------
T ss_pred eEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCcc------------------
Confidence 345555555444456899999999999999999999999999998754 99999998754
Q ss_pred CchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 262 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++++.|+|.++|+++++ ++|+++.+..|
T Consensus 158 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G 186 (210)
T 3apq_A 158 -----RMLCRMKGVNSYPSLFIF-RSGMAAVKYNG 186 (210)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-CTTSCCEECCS
T ss_pred -----HHHHHHcCCCcCCeEEEE-ECCCceeEecC
Confidence 458899999999999999 99999888776
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=121.61 Aligned_cols=76 Identities=20% Similarity=0.359 Sum_probs=67.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++|+|+|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+++++|+
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~ 77 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAE-----------------------QMIAAQFG 77 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTC-----------------------HHHHHTTT
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccC-----------------------HHHHHHcC
Confidence 35899999999999999999999999999999864 89999998854 45899999
Q ss_pred CCCccEEEEECCCCCEEeccchh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.++||++++ ++|+++.+..|.
T Consensus 78 v~~~Pt~~~~-~~G~~~~~~~g~ 99 (287)
T 3qou_A 78 LRAIPTVYLF-QNGQPVDGFQGP 99 (287)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESC
T ss_pred CCCCCeEEEE-ECCEEEEEeeCC
Confidence 9999999999 899999887763
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-14 Score=110.85 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=66.7
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
-++++++|+||++||++|+.+.|.+.++++++++.+ +.++.|+++.. .+++++|+
T Consensus 24 ~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~-----------------------~~~~~~~~ 78 (137)
T 2dj0_A 24 DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVGRY-----------------------TDVSTRYK 78 (137)
T ss_dssp STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS--CEEEECCTTTC-----------------------HHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCccC-----------------------HHHHHHcc
Confidence 356799999999999999999999999999997644 88988887754 45788899
Q ss_pred CC------CccEEEEECCCCCEEeccchhh
Q 018808 275 LS------TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 275 v~------~~P~~~lid~~G~i~~~~~~~~ 298 (350)
+. ++|+++++ ++|+++.+..|..
T Consensus 79 v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~ 107 (137)
T 2dj0_A 79 VSTSPLTKQLPTLILF-QGGKEAMRRPQID 107 (137)
T ss_dssp CCCCSSSSCSSEEEEE-SSSSEEEEESCBC
T ss_pred CcccCCcCCCCEEEEE-ECCEEEEEecCcC
Confidence 98 99999999 8999998877743
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=104.43 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=63.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.++.+++. + +.++.|+++.. .+++++|++
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~--v~~~~vd~~~~-----------------------~~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--Q--VAISSVDSEAR-----------------------PELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--T--SCEEEEEGGGC-----------------------HHHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--C--cEEEEEcCcCC-----------------------HHHHHHcCC
Confidence 46899999999999999999999999988764 2 78888887643 558899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 71 ~~~Pt~~~~-~~G~~v~~~~G 90 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAKVFSG 90 (110)
T ss_dssp CSSCEEEEE-ESSSEEEEEES
T ss_pred cccCEEEEE-ECCEEEEEEcC
Confidence 999999999 99999998877
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=104.86 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=61.6
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.++|+||++||++|+.+.|.+.++++++++.+ +.++.|+++.. .+++++|+|.++
T Consensus 24 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~-----------------------~~~~~~~~v~~~ 78 (126)
T 1x5e_A 24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQ-----------------------PGLSGRFIINAL 78 (126)
T ss_dssp EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTC-----------------------HHHHHHTTCCSS
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCC-----------------------HHHHHHcCCccc
Confidence 48999999999999999999999999988644 89999988754 458899999999
Q ss_pred cEEEEECCCCCEEeccch
Q 018808 279 PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 279 P~~~lid~~G~i~~~~~~ 296 (350)
|+++++ ++|++ .+..|
T Consensus 79 Pt~~~~-~~G~~-~~~~G 94 (126)
T 1x5e_A 79 PTIYHC-KDGEF-RRYQG 94 (126)
T ss_dssp SEEEEE-ETTEE-EECCS
T ss_pred CEEEEE-eCCeE-EEeec
Confidence 999999 89995 45555
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=101.60 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||++|+.+.|.+.++++++++ +.++.|++|.+ .++.++|++
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~-----------------------~~~~~~~~v 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN-----------------------PDIAARYGV 67 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC-----------------------HHHHHhCCc
Confidence 578999999999999999999999999988854 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 68 ~~~Pt~~~~-~~g~~~~~~~g 87 (104)
T 2e0q_A 68 MSLPTVIFF-KDGEPVDEIIG 87 (104)
T ss_dssp CSSCEEEEE-ETTEEEEEEES
T ss_pred cccCEEEEE-ECCeEhhhccC
Confidence 999999999 89999988776
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=101.57 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=66.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.++.++++++ +.++.|+++.+ .++.++|++
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 70 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDEN-----------------------PKTAMRYRV 70 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCC-----------------------HhHHHhCCC
Confidence 4789999999999999999999999999998754 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 71 ~~~Pt~~~~-~~g~~~~~~~g 90 (109)
T 2yzu_A 71 MSIPTVILF-KDGQPVEVLVG 90 (109)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcCCEEEEE-eCCcEeeeEeC
Confidence 999999999 99999987776
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-13 Score=100.45 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=65.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.+++++++++ +.++.|+++.+ .+++++|++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 70 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA-----------------------PGIATQYNI 70 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcch-----------------------HHHHHhCCC
Confidence 4689999999999999999999999999998764 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 71 ~~~Pt~~~~-~~g~~~~~~~G 90 (105)
T 1fb6_A 71 RSIPTVLFF-KNGERKESIIG 90 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEEEE
T ss_pred CcccEEEEE-eCCeEEEEEec
Confidence 999998888 79999988777
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=105.90 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=64.2
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
+.++|+++|+||++||++|+.+.|.+.++++++++ +.++.|++++. ..+++++|
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~----------------------~~~~~~~~ 87 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE----------------------NKTLAKEL 87 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST----------------------THHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcc----------------------hHHHHHHc
Confidence 34689999999999999999999999999998863 88888888631 15688999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.++|+++++ ++|+++.+..|
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~~~~G 109 (124)
T 1faa_A 88 GIRVVPTFKIL-KENSVVGEVTG 109 (124)
T ss_dssp CCSSSSEEEEE-ETTEEEEEEES
T ss_pred CCCeeeEEEEE-eCCcEEEEEcC
Confidence 99999996655 89999988777
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=117.78 Aligned_cols=161 Identities=17% Similarity=0.216 Sum_probs=108.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHH-------HHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHH
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPI-------LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~-------l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
.++ ++|+||++||+ |+.+.|. +.++++.++.. ++.++.|+++... .
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~Vd~~~~~------------------------~ 80 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMVDAKKEA------------------------K 80 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEEETTTTH------------------------H
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc-CcEEEEEeCCCCH------------------------H
Confidence 467 99999999999 9999999 88888888765 4999999987664 6
Q ss_pred HHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCc
Q 018808 109 LDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGR 188 (350)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~ 188 (350)
+++.|+|.++|+++++ ++|++... .| +.+.+.+...+.. .++ |. ....+..
T Consensus 81 l~~~~~v~~~Pt~~~~-~~g~~~~~--------~G----~~~~~~l~~~i~~------------~~~---~~-~~~l~~~ 131 (350)
T 1sji_A 81 LAKKLGFDEEGSLYVL-KGDRTIEF--------DG----EFAADVLVEFLLD------------LIE---DP-VEIINSK 131 (350)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEEEE--------CS----CCCHHHHHHHHHT------------TSS---CS-EEECCSH
T ss_pred HHHhcCCCccceEEEE-ECCcEEEe--------cC----CCCHHHHHHHHHH------------hcC---Cc-ceeccch
Confidence 9999999999999999 78875432 11 2344554444321 111 11 1111100
Q ss_pred eeeccc---cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchh
Q 018808 189 KISVSD---LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 265 (350)
Q Consensus 189 ~v~l~~---~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
. .+.. ...+.++|.|+++||. ...+.+.++++.+++. +.+..++ +
T Consensus 132 ~-~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~~---~~f~~~~-~------------------------ 179 (350)
T 1sji_A 132 L-EVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQPY---IKFFATF-D------------------------ 179 (350)
T ss_dssp H-HHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTTTT---SEEEEEC-C------------------------
T ss_pred H-HHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhccC---cEEEEEC-C------------------------
Confidence 0 1111 1235678888888864 4457788888888654 6555442 1
Q ss_pred HHHHHHHcCCCCccEEEEECC
Q 018808 266 REKLARYFELSTLPTLVIIGP 286 (350)
Q Consensus 266 ~~~~~~~~~v~~~P~~~lid~ 286 (350)
.++++.|++. .|+++++.+
T Consensus 180 -~~~~~~~~v~-~p~i~~~~~ 198 (350)
T 1sji_A 180 -KGVAKKLSLK-MNEVDFYEP 198 (350)
T ss_dssp -HHHHHHHTCC-TTCEEEECT
T ss_pred -HHHHHHcCCC-CCcEEEEeC
Confidence 4578899998 999999965
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=105.97 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.|.++++++ .+ +.++.|++|.+ .+++++|++
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~--v~~~~vd~~~~-----------------------~~~~~~~~i 74 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN--KD--VTFIKVDVDKN-----------------------GNAADAYGV 74 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TT--SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CC--eEEEEEECCCC-----------------------HHHHHhcCC
Confidence 4789999999999999999999999999988 33 89999998754 458899999
Q ss_pred CCccEEEEECC---CCCEEeccchh
Q 018808 276 STLPTLVIIGP---DGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~---~G~i~~~~~~~ 297 (350)
.++|++++++. +|+++.+..|.
T Consensus 75 ~~~Pt~~~~~~~~~~G~~~~~~~G~ 99 (118)
T 2f51_A 75 SSIPALFFVKKEGNEIKTLDQFVGA 99 (118)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEESC
T ss_pred CCCCEEEEEeCCCCcceEEEeecCC
Confidence 99999999965 49999988874
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-15 Score=120.05 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=65.2
Q ss_pred ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 188 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 188 ~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
+.++....+||++||+||++||++|+.+.|.|.++.+.+... +.++.|++|.+.+
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~---------------------- 91 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE---------------------- 91 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------------
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------------
Confidence 344555667899999999999999999999999977665432 5677787764321
Q ss_pred HHHHHcCC--CCccEEEEECCCCCEEeccchh
Q 018808 268 KLARYFEL--STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 268 ~~~~~~~v--~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+.+.|++ .++|+++++|++|+++.+..|.
T Consensus 92 ~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~ 123 (164)
T 1sen_A 92 PKDEDFSPDGGYIPRILFLDPSGKVHPEIINE 123 (164)
T ss_dssp CSCGGGCTTCSCSSEEEEECTTSCBCTTCCCT
T ss_pred HHHHHhcccCCcCCeEEEECCCCCEEEEEeCC
Confidence 03456666 6699999999999999887774
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=109.44 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=65.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++|+++|+||++||++|+.+.|.+.+++++++ + +.++.|+++.. .+++++|+|
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~~~~-----------------------~~l~~~~~v 83 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--Q--VSFVKLEAEGV-----------------------PEVSEKYEI 83 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--C--eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 48899999999999999999999999999873 2 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++ +|+++.+..|
T Consensus 84 ~~~Pt~~~~~-~G~~~~~~~G 103 (153)
T 2wz9_A 84 SSVPTFLFFK-NSQKIDRLDG 103 (153)
T ss_dssp CSSSEEEEEE-TTEEEEEEES
T ss_pred CCCCEEEEEE-CCEEEEEEeC
Confidence 9999999998 9999988776
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-14 Score=113.49 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=67.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHH--HHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVY--EKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~--~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
..||+|+|+|||+||++|+.+.|.+.+.. .++.+ ..++.|.+|++. .++...
T Consensus 42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~----~~fv~V~vD~e~----------------------~~~~~~ 95 (151)
T 3ph9_A 42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ----NKFIMLNLMHET----------------------TDKNLS 95 (151)
T ss_dssp HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH----HTCEEEEESSCC----------------------SCGGGC
T ss_pred HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh----cCeEEEEecCCc----------------------hhhHhh
Confidence 45899999999999999999999887642 22222 225566665321 112457
Q ss_pred cCCCCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHH
Q 018808 273 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR 322 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 322 (350)
|++.++||++++|++|+++.+..|... ...|+|..+..+.+.+..+
T Consensus 96 ~~v~~~PT~~f~~~~G~~v~~~~G~~~----~~~~~~~~~~~~~ll~~~~ 141 (151)
T 3ph9_A 96 PDGQYVPRIMFVDPSLTVRADIAGRYS----NRLYTYEPRDLPLLIENMK 141 (151)
T ss_dssp TTCCCSSEEEEECTTSCBCTTCCCSCT----TSTTCCCGGGHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCEEEEEeCCcC----CcccccchhhHHHHHHHHH
Confidence 889999999999999999999887422 2336666666555544443
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=104.31 Aligned_cols=94 Identities=24% Similarity=0.468 Sum_probs=78.1
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
...|.+++++.+ ..+++.++.....++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++...
T Consensus 29 ~~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~------- 99 (148)
T 3p2a_A 29 GRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEP------- 99 (148)
T ss_dssp TTTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH-------
T ss_pred hhcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCH-------
Confidence 344666777744 677777776666778 99999999999999999999999999875 4899999887664
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 100 -----------------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 124 (148)
T 3p2a_A 100 -----------------ALSTRFRIRSIPTIMLY-RNGKMIDM 124 (148)
T ss_dssp -----------------HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----------------HHHHHCCCCccCEEEEE-ECCeEEEE
Confidence 68899999999999999 69988764
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=104.18 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=64.7
Q ss_pred CCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCch
Q 018808 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDK 264 (350)
Q Consensus 185 ~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (350)
.+++.+......++.++|+||++||++|+.+.|.+.+++++++++ +.++.|+++.+
T Consensus 38 l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~--------------------- 93 (140)
T 1v98_A 38 ADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEH--------------------- 93 (140)
T ss_dssp -----------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC---------------------
T ss_pred CCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCC---------------------
Confidence 344444333233334999999999999999999999999998754 99999998854
Q ss_pred hHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 265 SREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 265 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++.++|++.++|+++++ ++|+++.+..|
T Consensus 94 --~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G 122 (140)
T 1v98_A 94 --PGLAARYGVRSVPTLVLF-RRGAPVATWVG 122 (140)
T ss_dssp --HHHHHHTTCCSSSEEEEE-ETTEEEEEEES
T ss_pred --HHHHHHCCCCccCEEEEE-eCCcEEEEEeC
Confidence 458899999999999999 89999988777
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=105.45 Aligned_cols=75 Identities=15% Similarity=0.314 Sum_probs=66.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.|.++++++++++ +.++.|++|.. .+++++|++
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~~~~~~~v 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ-----------------------SQIAQEVGI 86 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCC-----------------------HHHHHHcCC
Confidence 57899999999999999999999999998887655 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 87 ~~~Pt~~~~-~~G~~~~~~~G 106 (121)
T 2j23_A 87 RAMPTFVFF-KNGQKIDTVVG 106 (121)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-ECCeEEeeEcC
Confidence 999999999 69999988776
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=104.45 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=64.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.. .+++++|++
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~d~~-----------------------~~l~~~~~v 88 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--T--VKFAKVDADNN-----------------------SEIVSKCRV 88 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--T--SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--C--CEEEEEECCCC-----------------------HHHHHHcCC
Confidence 57899999999999999999999999999884 2 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 89 ~~~Pt~~i~-~~G~~~~~~~G 108 (125)
T 1r26_A 89 LQLPTFIIA-RSGKMLGHVIG 108 (125)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-eCCeEEEEEeC
Confidence 999998888 89999988776
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=101.65 Aligned_cols=73 Identities=10% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.+++++++ + +.++.|+++.. .++.++|++
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~--v~~~~vd~~~~-----------------------~~~~~~~~v 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--K--MVFIKVDVDEV-----------------------SEVTEKENI 77 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTT-----------------------HHHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--C--CEEEEEECCCC-----------------------HHHHHHcCC
Confidence 57899999999999999999999999998875 2 88999988754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~~G 97 (112)
T 1syr_A 78 TSMPTFKVY-KNGSSVDTLLG 97 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcccEEEEE-ECCcEEEEEeC
Confidence 999998777 79999988776
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=100.45 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=65.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.++++++|.||++||++|+.+.|.+.+++++++.. +.++.|++|.+ .++.++|+
T Consensus 18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~ 71 (106)
T 1xwb_A 18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC-----------------------EDIAMEYN 71 (106)
T ss_dssp HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccch-----------------------HHHHHHcC
Confidence 36889999999999999999999999999998633 99999998754 45889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|+++++ ++|+++.+..|
T Consensus 72 v~~~Pt~~~~-~~G~~~~~~~g 92 (106)
T 1xwb_A 72 ISSMPTFVFL-KNGVKVEEFAG 92 (106)
T ss_dssp CCSSSEEEEE-ETTEEEEEEES
T ss_pred CCcccEEEEE-cCCcEEEEEcC
Confidence 9999998777 89999988776
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=102.90 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=65.3
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHH--HHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILA--EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~--~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
....|| ++|+||++||++|+.+.|.|. ++.+.+++ ++.++.|+++.. +....++
T Consensus 25 ~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~---------------------~~~~~l~ 81 (133)
T 3fk8_A 25 GKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNF---------------------DRNLELS 81 (133)
T ss_dssp HHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTT---------------------TSSHHHH
T ss_pred HHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcc---------------------cchHHHH
Confidence 335688 999999999999999999999 99998865 488999988421 1123789
Q ss_pred hhcCC---CCcceEEEECCCCeEEecC
Q 018808 111 ELFKV---MGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 111 ~~~~v---~~~P~~~lid~~G~v~~~~ 134 (350)
+.|++ .++|+++++|++|+++.+.
T Consensus 82 ~~~~v~~~~~~Pt~~~~d~~G~~~~~~ 108 (133)
T 3fk8_A 82 QAYGDPIQDGIPAVVVVNSDGKVRYTT 108 (133)
T ss_dssp HHTTCGGGGCSSEEEEECTTSCEEEEC
T ss_pred HHhCCccCCccceEEEECCCCCEEEEe
Confidence 99999 9999999999999998763
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=106.55 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=62.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|++
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQ------------------------ELAGAFGI 90 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCH------------------------HHHHHcCC
Confidence 457 99999999999999999999999999875 4899999987654 68899999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|+++++|++|+++.
T Consensus 91 ~~~Pt~~~~~~~G~~~~ 107 (136)
T 2l5l_A 91 RSIPSILFIPMEGKPEM 107 (136)
T ss_dssp CSSCEEEEECSSSCCEE
T ss_pred CCCCEEEEECCCCcEEE
Confidence 99999999999998763
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=101.21 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=67.0
Q ss_pred eeccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC---CCEEEEEEECCCCHHHHHhHHhcCCCcc
Q 018808 23 LIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ---GDFEVIFVSGDEDDEAFKGYFSKMPWLA 97 (350)
Q Consensus 23 ~~~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~i~~d~~~~~~~~~~~~~~~~~ 97 (350)
...++++.++..-. .++ ++|+||++||++|+.+.|.|.++++++..+ +++.++.|+++...
T Consensus 17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~-------------- 82 (127)
T 3h79_A 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP-------------- 82 (127)
T ss_dssp CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH--------------
T ss_pred eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH--------------
Confidence 44566666655443 477 999999999999999999999999887532 36999999987664
Q ss_pred cccCChhhHHHHHhhcCCCCcceEEEECCCCe
Q 018808 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGK 129 (350)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (350)
.+++.|+|.++|+++++++.++
T Consensus 83 ----------~l~~~~~v~~~Pt~~~~~~g~~ 104 (127)
T 3h79_A 83 ----------DVIERMRVSGFPTMRYYTRIDK 104 (127)
T ss_dssp ----------HHHHHTTCCSSSEEEEECSSCS
T ss_pred ----------hHHHhcCCccCCEEEEEeCCCC
Confidence 6899999999999999976554
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=103.32 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=63.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.++++++.++ +.++.|+++.. .+++++|++
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v 73 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAY-----------------------PQTCQKAGI 73 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCC-----------------------HHHHHHcCC
Confidence 4689999999999999999999999999999764 99999998854 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++++|+ +.+..|
T Consensus 74 ~~~Pt~~~~~~~~~-~~~~~g 93 (122)
T 3aps_A 74 KAYPSVKLYQYERA-KKSIWE 93 (122)
T ss_dssp CSSSEEEEEEEEGG-GTEEEE
T ss_pred CccceEEEEeCCCc-cceeec
Confidence 99999999987776 444444
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=106.41 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=64.9
Q ss_pred eecCCCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCcccc
Q 018808 182 VISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALP 260 (350)
Q Consensus 182 ~~~~~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 260 (350)
+...++..+..... .+++++|+||++||++|+.+.|.|.+++++++..+ ++.++.|+++..
T Consensus 9 v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~~vd~~~~----------------- 70 (133)
T 2dj3_A 9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDATAN----------------- 70 (133)
T ss_dssp SEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEEEECTTTS-----------------
T ss_pred eEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEEEecCCcC-----------------
Confidence 34445555544333 48999999999999999999999999999997531 388888877643
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCE
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKT 290 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i 290 (350)
..+.++|+|.++|++++++.+|++
T Consensus 71 ------~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 71 ------DITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp ------CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred ------HHHHhhcCCCcCCEEEEEeCCCcc
Confidence 124568999999999999876654
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=103.56 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=64.4
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
+.++|+++|+||++||++|+.+.|.+.++++++ + +.++.|++|.. .+++++|
T Consensus 30 ~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~--~~~~~vd~~~~-----------------------~~~~~~~ 81 (117)
T 2xc2_A 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---D--AIFVKVDVDKL-----------------------EETARKY 81 (117)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---S--SEEEEEETTTS-----------------------HHHHHHT
T ss_pred hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---C--cEEEEEECCcc-----------------------HHHHHHc
Confidence 346899999999999999999999999998877 3 88999988743 4588999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.++|+++++ ++|+++.+..|
T Consensus 82 ~v~~~Pt~~~~-~~G~~~~~~~G 103 (117)
T 2xc2_A 82 NISAMPTFIAI-KNGEKVGDVVG 103 (117)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEES
T ss_pred CCCccceEEEE-eCCcEEEEEeC
Confidence 99999998888 89999988776
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=106.17 Aligned_cols=68 Identities=10% Similarity=0.273 Sum_probs=60.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+|||+||++|+.+.|.|.++.+++++ .+.|+.|++|..+ +++..|+|
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~------------------------e~a~~y~V 93 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVP------------------------DFNTMYEL 93 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCC------------------------TTTTTTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCH------------------------HHHHHcCC
Confidence 346 99999999999999999999999999975 4889999998775 58889999
Q ss_pred CCcceEEEECCCCeEE
Q 018808 116 MGIPHLVILDENGKVL 131 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~ 131 (350)
+++||++++ .+|+.+
T Consensus 94 ~siPT~~fF-k~G~~v 108 (160)
T 2av4_A 94 YDPVSVMFF-YRNKHM 108 (160)
T ss_dssp CSSEEEEEE-ETTEEE
T ss_pred CCCCEEEEE-ECCEEE
Confidence 999999988 788876
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=115.64 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=65.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+ .+++++|+|
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~v 82 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-----------------------PGTAPKYGI 82 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------TTTGGGGTC
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 5789999999999999999999999999999865 89999998854 236789999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 83 ~~~Pt~~~~-~~G~~~~~~~G 102 (222)
T 3dxb_A 83 RGIPTLLLF-KNGEVAATKVG 102 (222)
T ss_dssp CSBSEEEEE-ETTEEEEEEES
T ss_pred CcCCEEEEE-ECCeEEEEecc
Confidence 999999999 68999988777
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-13 Score=105.92 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++|+++|.||++||++|+.+.|.+.++++++++.+.++.++.|+++.+ .++.++|++
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v 79 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-----------------------SDLAQQYGV 79 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC-----------------------CSSHHHHTC
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC-----------------------HHHHHHCCC
Confidence 578999999999999999999999999999886544477888877643 246889999
Q ss_pred CCccEEEEECCCCCEE--eccch
Q 018808 276 STLPTLVIIGPDGKTL--HSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~--~~~~~ 296 (350)
.++|+++++ ++|+++ .+..|
T Consensus 80 ~~~Pt~~~~-~~g~~~~~~~~~g 101 (120)
T 1mek_A 80 RGYPTIKFF-RNGDTASPKEYTA 101 (120)
T ss_dssp CSSSEEEEE-ESSCSSSCEECCC
T ss_pred CcccEEEEE-eCCCcCCcccccC
Confidence 999999999 788876 55555
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=101.14 Aligned_cols=74 Identities=20% Similarity=0.358 Sum_probs=65.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.++.++++.. +.++.|+++.+ .+++++|++
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~i 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTN-----------------------PETARNFQV 82 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHhcCC
Confidence 4789999999999999999999999999998754 89999998754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 83 ~~~Pt~~~~-~~g~~~~~~~G 102 (121)
T 2i1u_A 83 VSIPTLILF-KDGQPVKRIVG 102 (121)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred CcCCEEEEE-ECCEEEEEecC
Confidence 999999988 69999988776
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-12 Score=116.75 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=97.5
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhcc----CCCEEEEEEECCCCHHHHHhHHhcCCCcccc
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSR----QGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~ 99 (350)
.++++++...--.++ ++|.||++||++|+.+.|.+.++++.+++ .+++.++.|+++...
T Consensus 9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~---------------- 72 (382)
T 2r2j_A 9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS---------------- 72 (382)
T ss_dssp BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH----------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH----------------
Confidence 445555543223567 99999999999999999999999999964 235899999987664
Q ss_pred cCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccC
Q 018808 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSR 179 (350)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p 179 (350)
.+++.|+|.++|+++++ ++|+++.+ .+.+ +.+...+.+++.... .....
T Consensus 73 --------~l~~~~~v~~~Pt~~~f-~~G~~~~~-------~~~G---~~~~~~l~~~i~~~~----~~~v~-------- 121 (382)
T 2r2j_A 73 --------DIAQRYRISKYPTLKLF-RNGMMMKR-------EYRG---QRSVKALADYIRQQK----SDPIQ-------- 121 (382)
T ss_dssp --------HHHHHTTCCEESEEEEE-ETTEEEEE-------ECCS---CCSHHHHHHHHHHHH----SCCCE--------
T ss_pred --------HHHHhcCCCcCCEEEEE-eCCcEeee-------eecC---cchHHHHHHHHHHhc----cCCce--------
Confidence 79999999999999988 68887642 1111 234555555544321 01100
Q ss_pred CceecCCCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEE
Q 018808 180 DFVISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238 (350)
Q Consensus 180 ~f~~~~~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v 238 (350)
. +.+. ..+. .+ ..+.++|.|++.+|.+ ..+.+.+++..+++. +.+...
T Consensus 122 ~-l~~~--~~l~--~l~~~~~~~v~ff~~~~~~---~~~~f~~~A~~~~~~---~~F~~~ 170 (382)
T 2r2j_A 122 E-IRDL--AEIT--TLDRSKRNIIGYFEQKDSD---NYRVFERVANILHDD---CAFLSA 170 (382)
T ss_dssp E-C----------------CCEEEEEESCSSSH---HHHHHHHHHHHHTTT---CEEEEE
T ss_pred e-cCCH--HHHH--HhcCCCCEEEEEECCCCCh---hHHHHHHHHHHhhcc---ceEEEE
Confidence 0 1110 1111 12 2356777788887654 355677888888765 554433
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=97.67 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=64.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++++|.||++||++|+.+.|.+.+++++++ + +.++.|+++.. .+++++|+
T Consensus 17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~-----------------------~~~~~~~~ 69 (104)
T 2vim_A 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--E--VEFAKVDVDQN-----------------------EEAAAKYS 69 (104)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--C--CEEEEEeccCC-----------------------HHHHHHcC
Confidence 367899999999999999999999999999885 3 88999988754 45889999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|+++++ ++|+++.+..|
T Consensus 70 v~~~Pt~~~~-~~g~~~~~~~G 90 (104)
T 2vim_A 70 VTAMPTFVFI-KDGKEVDRFSG 90 (104)
T ss_dssp CCSSSEEEEE-ETTEEEEEEES
T ss_pred CccccEEEEE-eCCcEEEEEeC
Confidence 9999998888 69999988776
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-13 Score=100.44 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=65.2
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++++|+||++||++|+.+.|.+.++.++++ + +.++.|++|.. .++.++|+
T Consensus 24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~-----------------------~~~~~~~~ 76 (113)
T 1ti3_A 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--N--VTFLKVDVDEL-----------------------KAVAEEWN 76 (113)
T ss_dssp TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTC-----------------------HHHHHHHH
T ss_pred hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--C--cEEEEEEcccc-----------------------HHHHHhCC
Confidence 357899999999999999999999999999885 3 99999998754 45789999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|+++++ ++|+++.+..|
T Consensus 77 v~~~Pt~~~~-~~G~~~~~~~g 97 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDKTVG 97 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEEEEC
T ss_pred CCcccEEEEE-eCCEEEEEEec
Confidence 9999999999 79999988776
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=102.11 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.|++++|+||++|||+|+.+.|.|.+++++++. .++.++++.... .+...+++++|+|
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~-----------------~~~~~~~~~~~~i 85 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQ-----------------LNDLQAFRSRYGI 85 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGG-----------------HHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCc-----------------HHHHHHHHHHcCC
Confidence 468999999999999999999999999988753 355666653211 1223568899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 86 ~~~Pt~~~~-~~G~~~~~~~G 105 (118)
T 1zma_A 86 PTVPGFVHI-TDGQINVRCDS 105 (118)
T ss_dssp CSSCEEEEE-ETTEEEEECCT
T ss_pred CCCCeEEEE-ECCEEEEEecC
Confidence 999999999 69999988777
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-13 Score=100.15 Aligned_cols=76 Identities=22% Similarity=0.512 Sum_probs=63.7
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHH
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
.+...-.+++ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .
T Consensus 16 ~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~------------------------~ 68 (109)
T 3f3q_A 16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELG------------------------D 68 (109)
T ss_dssp HHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCH------------------------H
T ss_pred HHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCH------------------------H
Confidence 3333334578 9999999999999999999999999985 3789999887654 6
Q ss_pred HHhhcCCCCcceEEEECCCCeEEec
Q 018808 109 LDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++.|++.++|++++++ +|+++.+
T Consensus 69 l~~~~~v~~~Pt~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 69 VAQKNEVSAMPTLLLFK-NGKEVAK 92 (109)
T ss_dssp HHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred HHHHcCCCccCEEEEEE-CCEEEEE
Confidence 88999999999999996 8988764
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-13 Score=114.21 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=71.6
Q ss_pred cCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc
Q 018808 184 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD 263 (350)
Q Consensus 184 ~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 263 (350)
..+++.+.....++++++|+||++||++|+.+.|.|.++++++++.+..+.++.|+++..
T Consensus 19 ~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-------------------- 78 (241)
T 3idv_A 19 VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA-------------------- 78 (241)
T ss_dssp EECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC--------------------
T ss_pred EecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC--------------------
Confidence 445555554445789999999999999999999999999999987765688888888754
Q ss_pred hhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 264 KSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 264 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|+|.++|+++++ ++|+++. +.|
T Consensus 79 ---~~l~~~~~v~~~Pt~~~~-~~g~~~~-~~g 106 (241)
T 3idv_A 79 ---SVLASRFDVSGYPTIKIL-KKGQAVD-YEG 106 (241)
T ss_dssp ---HHHHHHTTCCSSSEEEEE-ETTEEEE-CCS
T ss_pred ---HHHHHhcCCCcCCEEEEE-cCCCccc-ccC
Confidence 468999999999999999 5677774 444
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=108.23 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
+++|+||++||++|+.+.|.+.+++++++ +.++.|++++.... ...+...+++++|+|.++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~~ 93 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEGT 93 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCSS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCcee
Confidence 89999999999999999999999988774 67888888643211 111334678999999999
Q ss_pred cEEEEECCCCCEEeccchh
Q 018808 279 PTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 279 P~~~lid~~G~i~~~~~~~ 297 (350)
|++++++ +|+++.+..|.
T Consensus 94 Pt~~~~~-~G~~v~~~~G~ 111 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKLVGA 111 (135)
T ss_dssp SEEEEEE-TTEEEEEEESC
T ss_pred CeEEEEc-CCEEEEEEeCC
Confidence 9888885 99999998883
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-13 Score=110.23 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=61.7
Q ss_pred ecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 32 ~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.+++++|+ ++|+||++|||+|+.+.|.|.+++++++ ++.++.|+.|... .++
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~------------------------~~~ 100 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAE------------------------DDL 100 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHH------------------------HHT
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCH------------------------HHH
Confidence 35678899 9999999999999999999999998874 4888888765332 455
Q ss_pred hhcC---CCCcceEEEECCCCeEEec
Q 018808 111 ELFK---VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 111 ~~~~---v~~~P~~~lid~~G~v~~~ 133 (350)
..|. +.++|+++++|++|+++.+
T Consensus 101 ~~~~~~~v~~iPt~i~~~~~G~~~~~ 126 (167)
T 1z6n_A 101 RQRLALERIAIPLVLVLDEEFNLLGR 126 (167)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred HHHHHcCCCCcCeEEEECCCCCEEEE
Confidence 5565 9999999999998888764
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=114.83 Aligned_cols=218 Identities=17% Similarity=0.183 Sum_probs=119.2
Q ss_pred eeccCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCccccc
Q 018808 23 LIRSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 23 ~~~~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~ 100 (350)
.+.++.+.+.-.- -.++ ++|+||++||++|+.+.|.|.++++++++ .+.++.|++|.+.
T Consensus 19 vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~--~~~~~~v~~d~~~----------------- 79 (298)
T 3ed3_A 19 ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG--VVQVAAVNCDLNK----------------- 79 (298)
T ss_dssp CEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTSTT-----------------
T ss_pred eEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC--CcEEEEEEccCcc-----------------
Confidence 4455555554332 2467 99999999999999999999999999975 4889999988542
Q ss_pred CChhhHHHHHhhcCCCCcceEEEECCCCeEEec-CC--------ccceecccCcCCCCChHHHHHHHHHHHHHHHhhchh
Q 018808 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSD-GG--------VEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLR 171 (350)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~-~~--------~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~ 171 (350)
...+++.|+|.++|+++++++ |+++.+ .+ ......+.+ +.+.+.+..++..
T Consensus 80 -----~~~l~~~~~I~~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G---~r~~~~i~~fl~~----------- 139 (298)
T 3ed3_A 80 -----NKALCAKYDVNGFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSG---ARTLAPIVDFSLS----------- 139 (298)
T ss_dssp -----THHHHHHTTCCBSSEEEEEEC-CCC-------------CCCEEEECCS---CCSHHHHHHHHHT-----------
T ss_pred -----CHHHHHhCCCCccceEEEEEC-CceeecccccccccccccccceeecC---CcCHHHHHHHHHH-----------
Confidence 137999999999999999964 543221 11 001122221 3455555544432
Q ss_pred hhcccccCCceecCCC-ceee-ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 172 SVLTSHSRDFVISSDG-RKIS-VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 172 ~~~~~~~p~f~~~~~g-~~v~-l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
. .+........ +.+. +-.-..+++++.|... ....+.+.+++..+.+. +.+..++-++.....
T Consensus 140 -~----~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~-----~~~~~~f~~~A~~~~~~---~~F~~v~~~~~a~~~-- 204 (298)
T 3ed3_A 140 -R----IRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ-----DKISPVYKSIALDWLGK---FDFYSISNKKLKQLT-- 204 (298)
T ss_dssp -T----CCCCEEECSCGGGHHHHHTSCSSEEEEEEESS-----SSCCHHHHHHHHHTBTT---EEEEEEEGGGCCCCC--
T ss_pred -h----cccccEEcCCHHHHHHHHhcCCceEEEEEcCC-----CcchHHHHHHHHHhhcC---cEEEEEcchHhhhhh--
Confidence 1 1111111111 1110 1111246777777322 23346788888888775 888887644211000
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
.++++. ..+|........+...-.....|+++++++.+.....+.
T Consensus 205 ~~~~~~-~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~ 249 (298)
T 3ed3_A 205 DMNPTY-EKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYE 249 (298)
T ss_dssp TTCTTS-TTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECC
T ss_pred hhhhhc-ccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEec
Confidence 000000 011111111112222223467999999987654444444
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-13 Score=104.64 Aligned_cols=81 Identities=22% Similarity=0.456 Sum_probs=65.1
Q ss_pred ccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
.++++.+..... .++ ++|+||++||++|+.+.|.|.+++++++.++++.++.|+++...
T Consensus 11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~------------------- 71 (133)
T 2dj3_A 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND------------------- 71 (133)
T ss_dssp ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC-------------------
T ss_pred EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH-------------------
Confidence 556666665544 478 99999999999999999999999999975446888888776542
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCe
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGK 129 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (350)
.+++.|++.++|+++++++.|+
T Consensus 72 -----~~~~~~~v~~~Pt~~~~~~g~~ 93 (133)
T 2dj3_A 72 -----ITNDQYKVEGFPTIYFAPSGDK 93 (133)
T ss_dssp -----CCCSSCCCSSSSEEEEECTTCT
T ss_pred -----HHHhhcCCCcCCEEEEEeCCCc
Confidence 3566799999999999976654
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-13 Score=102.46 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=66.5
Q ss_pred eecCCCceeecc-ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC--CcEEEEEEeCCCCHHHHHHhhcCCCCcc
Q 018808 182 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG--ESFEIVLISLDDEEESFKRDLGSMPWLA 258 (350)
Q Consensus 182 ~~~~~g~~v~l~-~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 258 (350)
+.+.+++.+... ..++++++|+||++||++|+.+.|.+.++++++++.+ .++.++.|+++...
T Consensus 9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------- 74 (121)
T 2djj_A 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-------------- 74 (121)
T ss_dssp SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC--------------
T ss_pred eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc--------------
Confidence 344555555443 2467999999999999999999999999999998621 13889988887421
Q ss_pred ccCCchhHHHHHHHcCCCCccEEEEECCCCCE-Eeccch
Q 018808 259 LPFKDKSREKLARYFELSTLPTLVIIGPDGKT-LHSNVA 296 (350)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i-~~~~~~ 296 (350)
+.+ ++.++|++++++++|++ +.++.|
T Consensus 75 ----------~~~--~v~~~Pt~~~~~~~~~~~~~~~~G 101 (121)
T 2djj_A 75 ----------VPD--EIQGFPTIKLYPAGAKGQPVTYSG 101 (121)
T ss_dssp ----------CSS--CCSSSSEEEEECSSCTTSCCCCCC
T ss_pred ----------ccc--ccCcCCeEEEEeCcCCCCceEecC
Confidence 122 89999999999888774 555555
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-13 Score=104.40 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=60.6
Q ss_pred CCCEEEEEEeccCCc--------------cChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccC
Q 018808 196 EGKTIGLYFSMSSYK--------------ASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~--------------~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (350)
.+|+++|+||++||+ +|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~------------------ 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------ 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSC------------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------
Confidence 578999999999999 9999999999999888754 89999998854
Q ss_pred CchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 262 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++++|+|.++|+++++ ++|+++.+..|
T Consensus 79 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G 107 (123)
T 1oaz_A 79 -----PGTAPKYGIRGIPTLLLF-KNGEVAATKVG 107 (123)
T ss_dssp -----TTTGGGGTCCBSSEEEEE-ESSSEEEEEES
T ss_pred -----HHHHHHcCCCccCEEEEE-ECCEEEEEEeC
Confidence 347889999999999999 99999988777
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-13 Score=101.38 Aligned_cols=70 Identities=21% Similarity=0.473 Sum_probs=61.6
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+++ ++|+||++||++|+.+.|.|.++++++++ +.++.|+++... .+++.|+
T Consensus 29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~vd~d~~~------------------------~l~~~~~ 81 (116)
T 3qfa_C 29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQ------------------------DVASECE 81 (116)
T ss_dssp HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT---SEEEEEETTTTH------------------------HHHHHTT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCH------------------------HHHHHcC
Confidence 3788 99999999999999999999999998853 889999887654 6899999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+++.+
T Consensus 82 v~~~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 82 VKSMPTFQFF-KKGQKVGE 99 (116)
T ss_dssp CCSSSEEEEE-SSSSEEEE
T ss_pred CccccEEEEE-eCCeEEEE
Confidence 9999999999 78988764
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=99.26 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=64.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.++.++++ + +.++.|++|.. .++.++|++
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~-----------------------~~~~~~~~v 79 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--G--AIFLKVDVDEL-----------------------KDVAEAYNV 79 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--cEEEEEEcccC-----------------------HHHHHHcCC
Confidence 47899999999999999999999999999886 3 88999988743 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 80 ~~~Pt~~~~-~~g~~~~~~~g 99 (118)
T 2vm1_A 80 EAMPTFLFI-KDGEKVDSVVG 99 (118)
T ss_dssp CSBSEEEEE-ETTEEEEEEES
T ss_pred CcCcEEEEE-eCCeEEEEecC
Confidence 999999888 89999988766
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=98.76 Aligned_cols=82 Identities=22% Similarity=0.426 Sum_probs=68.0
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
..+++.++..-.+++ ++|+||++||++|+.+.|.|.++.+++++ ++.++.++++...
T Consensus 8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~-------------------- 65 (109)
T 3tco_A 8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQ-------------------- 65 (109)
T ss_dssp ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCH--------------------
T ss_pred EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCH--------------------
Confidence 344454443334578 99999999999999999999999999975 4889999887664
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 66 ----~~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (109)
T 3tco_A 66 ----KIADKYSVLNIPTTLIF-VNGQLVDS 90 (109)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHhcCcccCCEEEEE-cCCcEEEe
Confidence 68899999999999999 89988764
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=98.31 Aligned_cols=70 Identities=29% Similarity=0.635 Sum_probs=62.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|++
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQ------------------------ETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCC------------------------SHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCH------------------------HHHHHcCC
Confidence 678 99999999999999999999999999975 4899999987653 58889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVET 86 (112)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCEEEEE
Confidence 999999999 89998764
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=97.27 Aligned_cols=70 Identities=27% Similarity=0.612 Sum_probs=61.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ ++.++.++++... .+++.|++
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~------------------------~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENP------------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCH------------------------HHHHHcCC
Confidence 567 99999999999999999999999999875 4889999987664 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVKQ 86 (105)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred ccccEEEEE-eCCeEEEE
Confidence 999999999 89998764
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=102.55 Aligned_cols=92 Identities=29% Similarity=0.511 Sum_probs=69.5
Q ss_pred hcCccCCceeccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 15 LSSSARDFLIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 15 ~g~~~p~f~~~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
.+..+++-....+++.+....+ .++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 16 ~~~~m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~--------- 84 (128)
T 2o8v_B 16 PRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNP--------- 84 (128)
T ss_dssp -----CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCC---------
T ss_pred cccccccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCH---------
Confidence 3444444334445555553323 567 99999999999999999999999999875 4999999987653
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 85 ---------------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 109 (128)
T 2o8v_B 85 ---------------GTAPKYGIRGIPTLLLF-KNGEVAAT 109 (128)
T ss_dssp ---------------TTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred ---------------HHHHHcCCCccCEEEEE-eCCEEEEE
Confidence 57788999999999999 89998764
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-11 Score=111.27 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=105.5
Q ss_pred CCc-EEEEEecCCChhhhhhh------HHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 37 KGK-IGLYFSASWCGPCQRFT------PILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
.++ ++|+||++||++|.... |.+..+.+.++.. .+.++.|+++... .+
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~-~v~~~~Vd~~~~~------------------------~l 83 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDA------------------------AV 83 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTTH------------------------HH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC-CceEEEEeCcccH------------------------HH
Confidence 456 99999999999973322 5788888888754 4999999988664 79
Q ss_pred HhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCC-c
Q 018808 110 DELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDG-R 188 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g-~ 188 (350)
|+.|+|+++||++++ ++|+.+... | +.+...+..++.... .... ..... .
T Consensus 84 ~~~~~V~~~PTl~~f-~~G~~~~y~--------G----~~~~~~i~~~i~~~~----~~~v------------~~i~~~~ 134 (367)
T 3us3_A 84 AKKLGLTEEDSIYVF-KEDEVIEYD--------G----EFSADTLVEFLLDVL----EDPV------------ELIEGER 134 (367)
T ss_dssp HHHHTCCSTTEEEEE-ETTEEEECC--------S----CCSHHHHHHHHHHHH----SCSE------------EECCSHH
T ss_pred HHHcCCCcCceEEEE-ECCcEEEeC--------C----CCCHHHHHHHHHHhc----CCCc------------EEcCCHH
Confidence 999999999999999 578765321 1 245555555554321 0000 00100 0
Q ss_pred eee-ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 189 KIS-VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 189 ~v~-l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
.+. +-....++++|.|+.+||. ...+.+.+++..+++. +.+..++ + .
T Consensus 135 ~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~---~~F~~~~-~-------------------------~ 182 (367)
T 3us3_A 135 ELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY---IPFFATF-D-------------------------S 182 (367)
T ss_dssp HHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT---SCEEEEC-C-------------------------H
T ss_pred HHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC---cEEEEEC-C-------------------------H
Confidence 000 0011236788889998875 4556677888888754 5555442 1 3
Q ss_pred HHHHHcCCCCccEEEEECC
Q 018808 268 KLARYFELSTLPTLVIIGP 286 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~ 286 (350)
++++.|++.. |+++++-+
T Consensus 183 ~~~~~~~v~~-p~i~lf~~ 200 (367)
T 3us3_A 183 KVAKKLTLKL-NEIDFYEA 200 (367)
T ss_dssp HHHHHHTCCT-TCEEEECT
T ss_pred HHHHHcCCCC-CeEEEEcC
Confidence 5778888874 88888854
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=99.23 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=65.3
Q ss_pred eeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 23 ~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
...++++.+. +...+ ++|+||++||++|+.+.|.|.++++++++. ++.++.|+++...
T Consensus 9 v~~l~~~~f~--~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~v~~~~vd~~~~~------------------ 67 (126)
T 1x5e_A 9 VRVITDENWR--ELLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQP------------------ 67 (126)
T ss_dssp EEECCTTTHH--HHTSSEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEETTTCH------------------
T ss_pred cEEecHHHHH--HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECcCCH------------------
Confidence 3344555544 23334 999999999999999999999999998754 4889999887654
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.+++.|++.++|+++++ ++|++.
T Consensus 68 ------~~~~~~~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 68 ------GLSGRFIINALPTIYHC-KDGEFR 90 (126)
T ss_dssp ------HHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred ------HHHHHcCCcccCEEEEE-eCCeEE
Confidence 68899999999999999 899864
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-12 Score=120.85 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=66.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+|||+||++|+.+.|.+.++++++++.+..+.++.|+++.+ ...+++++|+|.
T Consensus 30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d---------------------~~~~l~~~~~V~ 88 (519)
T 3t58_A 30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEE---------------------TNSAVCREFNIA 88 (519)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSG---------------------GGHHHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcc---------------------ccHHHHHHcCCc
Confidence 58999999999999999999999999999987333499999998742 226799999999
Q ss_pred CccEEEEECC---CCCEEeccch
Q 018808 277 TLPTLVIIGP---DGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~---~G~i~~~~~~ 296 (350)
++|+++++++ +|+.+....|
T Consensus 89 ~~PTl~~f~~g~~~G~~~~~~~g 111 (519)
T 3t58_A 89 GFPTVRFFQAFTKNGSGATLPGA 111 (519)
T ss_dssp SBSEEEEECTTCCSCCCEEECCS
T ss_pred ccCEEEEEcCcccCCCceeEecC
Confidence 9999999987 7776665554
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=106.28 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=61.0
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHh--HHhcCCCcccccCChhhH
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKG--YFSKMPWLAVPFSDSETR 106 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~ 106 (350)
++..+|| ++|+||++||++|+.+.+.+ .++.+.+++ ++.++.|+++...+.... .........+... .+..
T Consensus 42 ~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 118 (172)
T 3f9u_A 42 YARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTERTLRTV-GDKW 118 (172)
T ss_dssp HHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEH-HHHH
T ss_pred HHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchhhhhhhh-hhhh
Confidence 3345799 99999999999999973333 444444443 488999998765421000 0000111111111 1122
Q ss_pred HHH-HhhcCCCCcceEEEECCCCeEEec
Q 018808 107 DKL-DELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 107 ~~l-~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+ .+.|++.++|+++++|++|+++.+
T Consensus 119 ~~~~~~~~~v~~~Pt~~lid~~G~~~~~ 146 (172)
T 3f9u_A 119 SYLQRVKFGANAQPFYVLIDNEGNPLNK 146 (172)
T ss_dssp HHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred hHHHHHHcCCCCcceEEEECCCCCEEee
Confidence 233 588999999999999999998774
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=96.62 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=53.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... .+++.|++
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~------------------------~l~~~~~v 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQ------------------------EIAGRYAV 69 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCH------------------------HHHHhcCC
Confidence 567 9999999999999999999999999884 4999999988664 58889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T 4euy_A 70 FTGPTVLLF-YNGKEILR 86 (105)
T ss_dssp CCCCEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-eCCeEEEE
Confidence 999999999 59988764
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=101.61 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=66.2
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
.++++.+......++ ++|+||++||++|+.+.|.|.++++++++++ ++.++.|+++...
T Consensus 21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------- 81 (140)
T 2dj1_A 21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS------------------- 81 (140)
T ss_dssp ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH-------------------
T ss_pred EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH-------------------
Confidence 345555554334678 9999999999999999999999999998653 4888888776553
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.+++.|++.++|+++++ ++|++.
T Consensus 82 -----~~~~~~~v~~~Pt~~~~-~~G~~~ 104 (140)
T 2dj1_A 82 -----MLASKFDVSGYPTIKIL-KKGQAV 104 (140)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred -----HHHHHCCCCccCeEEEE-ECCcEE
Confidence 68899999999999999 788843
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=103.33 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=60.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|++|... .+++.|++
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTA------------------------VYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCC------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCH------------------------HHHHHcCC
Confidence 477 99999999999999999999999999865 4899999987664 68899999
Q ss_pred CCcceEEEECCCCeEE
Q 018808 116 MGIPHLVILDENGKVL 131 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~ 131 (350)
.++|+++++ ++|+++
T Consensus 76 ~~~Pt~~~~-~~G~~v 90 (149)
T 3gix_A 76 SYIPSTVFF-FNGQHM 90 (149)
T ss_dssp CSSSEEEEE-ETTEEE
T ss_pred CccCeEEEE-ECCeEE
Confidence 999999955 789887
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-13 Score=101.54 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=62.2
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|+||++||++|+.+.|.|.++++++.+ +.++.|++|.. +++|+|.
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~----v~f~kvd~d~~--------------------------~~~~~v~ 72 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKAIVNSC--------------------------IQHYHDN 72 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT----SEEEEEEGGGT--------------------------STTCCGG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----CEEEEEEhHHh--------------------------HHHCCCC
Confidence 45999999999999999999999999999853 88999987731 3689999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++||++++ ++|+.+.+..|..
T Consensus 73 ~~PT~~~f-k~G~~v~~~~G~~ 93 (118)
T 3evi_A 73 CLPTIFVY-KNGQIEAKFIGII 93 (118)
T ss_dssp GCSEEEEE-ETTEEEEEEESTT
T ss_pred CCCEEEEE-ECCEEEEEEeChh
Confidence 99999999 9999999988854
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=95.54 Aligned_cols=70 Identities=24% Similarity=0.545 Sum_probs=62.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|+||++||++|+.+.|.+.++++++++ ++.++.|+++... .+++.|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENP------------------------STAAKYEV 71 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCH------------------------HHHHhCCC
Confidence 778 99999999999999999999999999976 3889999987664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~G~~~~~ 88 (106)
T 3die_A 72 MSIPTLIVF-KDGQPVDK 88 (106)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred cccCEEEEE-eCCeEEEE
Confidence 999999999 59988764
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=105.67 Aligned_cols=115 Identities=12% Similarity=0.282 Sum_probs=87.8
Q ss_pred hcCccCCceecc------------CC----ceeecCC-CCCc-EEEEEe-cCCChhhh-hhhHHHHHHHHHh-ccCCCE-
Q 018808 15 LSSSARDFLIRS------------NG----DQVKLDS-LKGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNEL-SRQGDF- 72 (350)
Q Consensus 15 ~g~~~p~f~~~~------------~g----~~~~l~~-~~gk-~~v~F~-~~~C~~C~-~~~~~l~~l~~~~-~~~~~~- 72 (350)
+|+++|+|++.. +| +.+++++ ++|| ++|+|| ..|||.|. .+++.|.+.+.+| ++.+ +
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g-~~ 81 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN-FD 81 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC-CS
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC-Cc
Confidence 599999998843 67 7999998 6998 777664 57999999 9999999999999 8876 7
Q ss_pred EEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 73 EVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 73 ~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
.+++|+.|+ ....++|.+..+...++.. .|...++++.||+. ....++||| +|+|++.
T Consensus 82 ~V~gvS~D~-~~~~~~~~~~~~~~~f~lL-sD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~ 150 (182)
T 1xiy_A 82 DIYCITNND-IYVLKSWFKSMDIKKIKYI-SDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM 150 (182)
T ss_dssp EEEEEESSC-HHHHHHHHHHTTCCSSEEE-ECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred EEEEEeCCC-HHHHHHHHHHcCCCCceEE-EeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEE
Confidence 499999874 4455667776664335533 33456899999973 246788898 9999885
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=104.09 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=53.2
Q ss_pred CEEEEEEeccC--CccChhhHHHHHHHHHHHhcCCCcEE--EEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 198 KTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFE--IVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 198 k~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~~~--vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
+.++|+||++| |++|+.+.|.|.++++++ ++ +. ++.|++|. ..+++++|
T Consensus 35 ~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~-----------------------~~~la~~~ 87 (142)
T 2es7_A 35 GDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQ-----------------------SEAIGDRF 87 (142)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHH-----------------------HHHHHHTT
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCC-----------------------CHHHHHhc
Confidence 45778899887 999999999999999998 43 77 88887652 25689999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+|.++||++++ ++|+++.+..|
T Consensus 88 ~V~~iPT~~~f-k~G~~v~~~~G 109 (142)
T 2es7_A 88 NVRRFPATLVF-TDGKLRGALSG 109 (142)
T ss_dssp TCCSSSEEEEE-SCC----CEES
T ss_pred CCCcCCeEEEE-eCCEEEEEEeC
Confidence 99999999999 99999998887
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=110.93 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=60.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+||++||++|+.+.|.+.++++++++.+..+.++.|+++.+. ..+++++|+|
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~~~l~~~~~v 87 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET---------------------NSAVCRDFNI 87 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT---------------------THHHHHHTTC
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh---------------------hHHHHHHcCC
Confidence 3589999999999999999999999999999873234999999986321 2668999999
Q ss_pred CCccEEEEECC
Q 018808 276 STLPTLVIIGP 286 (350)
Q Consensus 276 ~~~P~~~lid~ 286 (350)
.++|+++++++
T Consensus 88 ~~~Pt~~~~~~ 98 (244)
T 3q6o_A 88 PGFPTVRFFXA 98 (244)
T ss_dssp CSSSEEEEECT
T ss_pred CccCEEEEEeC
Confidence 99999999976
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=96.47 Aligned_cols=72 Identities=18% Similarity=0.411 Sum_probs=60.0
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
+..|+ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... ..+++.|
T Consensus 21 ~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~-----------------------~~~~~~~ 74 (111)
T 2pu9_C 21 AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQEN-----------------------KTLAKEL 74 (111)
T ss_dssp TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTT-----------------------HHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcch-----------------------HHHHHHc
Confidence 34688 9999999999999999999999999886 3889999887321 2788999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
++.++|++++ +++|+++.+
T Consensus 75 ~v~~~Pt~~~-~~~G~~~~~ 93 (111)
T 2pu9_C 75 GIRVVPTFKI-LKENSVVGE 93 (111)
T ss_dssp CCSBSSEEEE-ESSSSEEEE
T ss_pred CCCeeeEEEE-EeCCcEEEE
Confidence 9999999555 489998764
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=100.64 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=62.0
Q ss_pred Cc-EEEEEecCCC--hhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 38 GK-IGLYFSASWC--GPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 38 gk-~~v~F~~~~C--~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
++ ++|+||++|| ++|+.+.|.|.++.++|.. ++.++.|++|..+ .++..|+
T Consensus 33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~------------------------~la~~yg 86 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAER------------------------GLMARFG 86 (137)
T ss_dssp SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHH------------------------HHHHHHT
T ss_pred CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCH------------------------HHHHHcC
Confidence 35 9999999999 9999999999999999965 5999999876553 7999999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|+++||++++ ++|+++.+
T Consensus 87 V~siPTlilF-kdG~~v~~ 104 (137)
T 2qsi_A 87 VAVCPSLAVV-QPERTLGV 104 (137)
T ss_dssp CCSSSEEEEE-ECCEEEEE
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 89999875
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=92.10 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=55.5
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
.++++.||++|||+|+.+.|.+.+++++++++ +.++.|++|++ .++.++||+.+
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~ 56 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN-----------------------PQKAMEYGIMA 56 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS-----------------------CCTTTSTTTCC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCC-----------------------HHHHHHCCCcc
Confidence 57899999999999999999999999998743 99999998754 23678899999
Q ss_pred ccEEEEECCCCCE
Q 018808 278 LPTLVIIGPDGKT 290 (350)
Q Consensus 278 ~P~~~lid~~G~i 290 (350)
+|++++ +|++
T Consensus 57 ~Pt~~~---~G~~ 66 (85)
T 1fo5_A 57 VPTIVI---NGDV 66 (85)
T ss_dssp SSEEEE---TTEE
T ss_pred cCEEEE---CCEE
Confidence 999998 8887
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=96.16 Aligned_cols=71 Identities=30% Similarity=0.716 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++... ++.++.|+++... .+++.|++
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~------------------------~~~~~~~v 74 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENS------------------------EISELFEI 74 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT-TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC-CEEEEEEecccCH------------------------HHHHHcCC
Confidence 477 999999999999999999999999987544 4899999987654 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 75 ~~~Pt~~~~-~~G~~~~~ 91 (112)
T 3d6i_A 75 SAVPYFIII-HKGTILKE 91 (112)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCEEEEE
Confidence 999999998 79998764
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=101.49 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=61.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|+++||+||++||++|+.+.|.|.++++++. . +.++.|+++.. .++|+|
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~--v~~~~vd~~~~--------------------------~~~~~i 78 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--E--TKFVKAIVNSC--------------------------IEHYHD 78 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--S--EEEEEECCSSS--------------------------CSSCCS
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--C--cEEEEEEhhcC--------------------------cccCCC
Confidence 35799999999999999999999999999884 2 88998887742 158999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|.
T Consensus 79 ~~~Pt~~~~-~~G~~v~~~~G~ 99 (135)
T 2dbc_A 79 NCLPTIFVY-KNGQIEGKFIGI 99 (135)
T ss_dssp SCCSEEEEE-SSSSCSEEEEST
T ss_pred CCCCEEEEE-ECCEEEEEEEeE
Confidence 999999999 599999888774
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=103.89 Aligned_cols=116 Identities=9% Similarity=0.207 Sum_probs=89.4
Q ss_pred hhcCccCCceeccCC--ceeecCC-CCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEE-EEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIRSNG--DQVKLDS-LKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFE-VIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~~~g--~~~~l~~-~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~-~v~i~~d~~~~~~~ 87 (350)
-+|+++|+|++..+| +.++|++ ++|| ++|+||- .|||.|..+.+.|.+.+.+|++.+ +. +++|++|+. ...+
T Consensus 15 ~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g-v~~VigIS~D~~-~~~~ 92 (171)
T 2xhf_A 15 KVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG-YHTIACIAVNDP-FVMA 92 (171)
T ss_dssp CTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT-CCEEEEEESSCH-HHHH
T ss_pred cCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHH
Confidence 469999999886555 8999999 5999 8777765 699999999999999999999886 75 999998854 4555
Q ss_pred hHHhcCCC-cccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMPW-LAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
+|.+..+. ..++.. .|.+.++++.||+. ....++||| +|+|++.
T Consensus 93 ~w~~~~~~~~~f~lL-SD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~ 148 (171)
T 2xhf_A 93 AWGKTVDPEHKIRML-ADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSV 148 (171)
T ss_dssp HHHHHHCTTCCSEEE-ECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred HHHHhcCCCCCeEEE-EeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEE
Confidence 66665543 134433 33556999999974 235778888 9999874
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-12 Score=99.22 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred ccCCceee-cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVK-LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~-l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
..+++.+. ...-.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 10 ~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------- 68 (140)
T 3hz4_A 10 EFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNP------------------- 68 (140)
T ss_dssp EECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCH-------------------
T ss_pred EcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCH-------------------
Confidence 34444444 2222467 99999999999999999999999999976 4899999987664
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 69 -----~l~~~~~v~~~Pt~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 69 -----WTAEKYGVQGTPTFKFF-CHGRPVWE 93 (140)
T ss_dssp -----HHHHHHTCCEESEEEEE-ETTEEEEE
T ss_pred -----hHHHHCCCCcCCEEEEE-eCCcEEEE
Confidence 68899999999999999 78988753
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=94.63 Aligned_cols=81 Identities=30% Similarity=0.568 Sum_probs=66.1
Q ss_pred cCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 26 SNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 26 ~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.+++.+...- -.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 7 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~-------------------- 64 (108)
T 2trx_A 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP-------------------- 64 (108)
T ss_dssp CCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCT--------------------
T ss_pred cchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCH--------------------
Confidence 3444444222 2567 99999999999999999999999999875 4999999987654
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 65 ----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (108)
T 2trx_A 65 ----GTAPKYGIRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp ----THHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHHcCCcccCEEEEE-eCCEEEEE
Confidence 57889999999999999 89998764
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=92.91 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=54.6
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
++++.||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .++.++||+.++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 56 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD-----------------------REKAIEYGLMAV 56 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC-----------------------GGGGGGTCSSCS
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHhCCceee
Confidence 4688999999999999999999999998754 88999988754 246789999999
Q ss_pred cEEEEECCCCCE
Q 018808 279 PTLVIIGPDGKT 290 (350)
Q Consensus 279 P~~~lid~~G~i 290 (350)
|++++ +|++
T Consensus 57 Pt~~~---~G~~ 65 (85)
T 1nho_A 57 PAIAI---NGVV 65 (85)
T ss_dssp SEEEE---TTTE
T ss_pred CEEEE---CCEE
Confidence 99998 8887
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-12 Score=96.50 Aligned_cols=70 Identities=24% Similarity=0.540 Sum_probs=61.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|++
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~v 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHT------------------------DLAIEYEV 83 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCH------------------------HHHHHcCC
Confidence 567 99999999999999999999999999865 4899999987653 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 84 ~~~Pt~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 84 SAVPTVLAM-KNGDVVDK 100 (119)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCcEEEE
Confidence 999999999 89998764
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-12 Score=94.91 Aligned_cols=82 Identities=29% Similarity=0.583 Sum_probs=65.9
Q ss_pred ccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
..+++.+...-. .++ ++|+||++||++|+.+.|.|.++++++++ ++.++.++++...
T Consensus 9 ~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------- 67 (112)
T 1t00_A 9 HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENP------------------- 67 (112)
T ss_dssp EECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH-------------------
T ss_pred ecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCH-------------------
Confidence 334444432222 467 99999999999999999999999999865 4899999987664
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 68 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 92 (112)
T 1t00_A 68 -----GTAAKYGVMSIPTLNVY-QGGEVAKT 92 (112)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHhCCCCcccEEEEE-eCCEEEEE
Confidence 68889999999999888 79988763
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=105.45 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=61.2
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHH---HHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhH
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPR---LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~---l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
+..+..+||+|+|+||++||++|+.+.+. ..++.+.+++. +.++.|+.|..++-...+..
T Consensus 32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~~-------------- 94 (173)
T 3ira_A 32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYMT-------------- 94 (173)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHHH--------------
T ss_pred HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHHH--------------
Confidence 34444568999999999999999998883 24556666543 77888877754432222211
Q ss_pred HHHHHHcCCCCccEEEEECCCCCEEec
Q 018808 267 EKLARYFELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 267 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 293 (350)
.+...+|+.++|++++++++|+++..
T Consensus 95 -~~q~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 95 -VCQIILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp -HHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred -HHHHHcCCCCCcceeeECCCCCceee
Confidence 12223599999999999999999986
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-12 Score=99.29 Aligned_cols=69 Identities=10% Similarity=0.280 Sum_probs=60.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|++
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~------------------------~~~~~~~i 75 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVP------------------------DFNKMYEL 75 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCC------------------------TTTTSSCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCH------------------------HHHHHcCC
Confidence 478 99999999999999999999999999965 4999999988654 47788999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|+++++ .+|+.+.
T Consensus 76 ~~~Pt~~~~-~~G~~v~ 91 (142)
T 1qgv_A 76 YDPCTVMFF-FRNKHIM 91 (142)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred CCCCEEEEE-ECCcEEE
Confidence 999999999 6888775
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-12 Score=94.11 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=60.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.+++++++ ++.++.++++... .+++.|++
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~------------------------~~~~~~~v 72 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQ------------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCH------------------------HHHHhcCC
Confidence 577 9999999999999999999999999983 4889999987664 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 73 ~~~Pt~~~~-~~G~~~~~ 89 (107)
T 1gh2_A 73 SATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCeEEEE
Confidence 999999999 78987763
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-12 Score=94.50 Aligned_cols=71 Identities=23% Similarity=0.476 Sum_probs=61.4
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++ ++|+||++||++|+.+.|.+.++.+++... ..+.++.++++... .+++.|++
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~l~~~~~v 76 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER------------------------NICSKYSV 76 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH------------------------hHHHhcCC
Confidence 67 999999999999999999999999987654 35899999887664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 77 ~~~Pt~~~~-~~g~~~~~ 93 (111)
T 3uvt_A 77 RGYPTLLLF-RGGKKVSE 93 (111)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCcEEEe
Confidence 999999999 78887653
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-12 Score=96.51 Aligned_cols=70 Identities=27% Similarity=0.619 Sum_probs=61.7
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+++ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.|+
T Consensus 36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~------------------------~l~~~~~ 88 (124)
T 1xfl_A 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELK------------------------SVASDWA 88 (124)
T ss_dssp HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSH------------------------HHHHHTT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCH------------------------HHHHHcC
Confidence 3688 9999999999999999999999999985 4899999887653 6889999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+++.+
T Consensus 89 v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999998888 89998764
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.7e-12 Score=93.40 Aligned_cols=70 Identities=23% Similarity=0.589 Sum_probs=61.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESP------------------------NVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 467 99999999999999999999999999875 4889999887654 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~G~~~~~ 88 (107)
T 1dby_A 72 RSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp CSSCEEEEE-SSSSEEEE
T ss_pred CcCCEEEEE-eCCEEEEE
Confidence 999999888 79988763
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=100.55 Aligned_cols=88 Identities=22% Similarity=0.357 Sum_probs=68.6
Q ss_pred CCceeccCCceee--cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCc
Q 018808 20 RDFLIRSNGDQVK--LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (350)
Q Consensus 20 p~f~~~~~g~~~~--l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~ 96 (350)
|+.....+.+.+. +..-+++ ++|+||++||++|+.+.|.|.++++++++. ++.++.|+++...
T Consensus 6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------- 71 (137)
T 2dj0_A 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYT------------- 71 (137)
T ss_dssp CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS-SCEEEECCTTTCH-------------
T ss_pred CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCccCH-------------
Confidence 4444444555443 3344667 999999999999999999999999999754 4888888876654
Q ss_pred ccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 97 AVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++. ++|+++++ ++|+++.+
T Consensus 72 -----------~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~ 102 (137)
T 2dj0_A 72 -----------DVSTRYKVSTSPLTKQLPTLILF-QGGKEAMR 102 (137)
T ss_dssp -----------HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred -----------HHHHHccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence 578889998 99999999 78988764
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-12 Score=94.03 Aligned_cols=70 Identities=27% Similarity=0.562 Sum_probs=61.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++++ ++.++.|+++... .+++.|++
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v 74 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEK------------------------TLFQRFSL 74 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcCh------------------------hHHHhcCC
Confidence 467 99999999999999999999999999875 4899999987664 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 75 ~~~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 75 KGVPQILYF-KDGEYKGK 91 (111)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999999 78987753
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=92.52 Aligned_cols=81 Identities=27% Similarity=0.548 Sum_probs=66.4
Q ss_pred cCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 26 SNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 26 ~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.+++.+...- -.++ ++|.||++||++|+.+.|.|.++.+++++ ++.++.|+++...
T Consensus 7 l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~-------------------- 64 (107)
T 2i4a_A 7 VSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNP-------------------- 64 (107)
T ss_dssp CCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCC--------------------
T ss_pred cchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCH--------------------
Confidence 3444443222 3567 99999999999999999999999999975 4999999987653
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 65 ----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 2i4a_A 65 ----ETPNAYQVRSIPTLMLV-RDGKVIDK 89 (107)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHhcCCCccCEEEEE-eCCEEEEE
Confidence 68889999999999999 89998764
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=94.13 Aligned_cols=82 Identities=26% Similarity=0.536 Sum_probs=67.6
Q ss_pred ccCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
..+++.+.... -.++ ++|+||++||++|+.+.|.|.++.+++++ ++.++.|+++...
T Consensus 11 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~------------------- 69 (115)
T 1thx_A 11 TITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNP------------------- 69 (115)
T ss_dssp ECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCH-------------------
T ss_pred EeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCH-------------------
Confidence 34555554332 3567 99999999999999999999999999875 4899999988664
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 70 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 94 (115)
T 1thx_A 70 -----TTVKKYKVEGVPALRLV-KGEQILDS 94 (115)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHHcCCCceeEEEEE-cCCEEEEE
Confidence 68899999999999999 89998764
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-12 Score=93.56 Aligned_cols=70 Identities=23% Similarity=0.518 Sum_probs=61.6
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+++ ++|+||++||++|+.+.|.+.++.+++++ +.++.++++... .+++.|+
T Consensus 18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~vd~~~~~------------------------~~~~~~~ 70 (105)
T 3m9j_A 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQ------------------------DVASESE 70 (105)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---SEEEEEETTTCH------------------------HHHHHTT
T ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC---eEEEEEEhhhhH------------------------HHHHHcC
Confidence 4678 99999999999999999999999998853 889999887664 6889999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+.+.+
T Consensus 71 v~~~Pt~~~~-~~g~~~~~ 88 (105)
T 3m9j_A 71 VKSMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp CCBSSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-ECCeEEEE
Confidence 9999999999 78887764
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=95.08 Aligned_cols=83 Identities=20% Similarity=0.426 Sum_probs=65.4
Q ss_pred ccCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhcc--CCCEEEEEEECCCCHHHHHhHHhcCCCccccc
Q 018808 25 RSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSR--QGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 25 ~~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~ 100 (350)
.++++.+...- -.++ ++|+||++||++|+.+.|.|.++++++++ .+++.++.|+++...
T Consensus 11 ~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----------------- 73 (133)
T 1x5d_A 11 ELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ----------------- 73 (133)
T ss_dssp ECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC-----------------
T ss_pred EcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH-----------------
Confidence 44455444322 2467 99999999999999999999999999972 125999999887653
Q ss_pred CChhhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.|++.++|+++++++ |+.+.
T Consensus 74 -------~l~~~~~v~~~Pt~~~~~~-g~~~~ 97 (133)
T 1x5d_A 74 -------VLASRYGIRGFPTIKIFQK-GESPV 97 (133)
T ss_dssp -------HHHHHHTCCSSSEEEEEET-TEEEE
T ss_pred -------HHHHhCCCCeeCeEEEEeC-CCceE
Confidence 6889999999999999976 77654
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-12 Score=102.10 Aligned_cols=80 Identities=21% Similarity=0.505 Sum_probs=63.7
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhh
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
.+++++.+|+ ++|+||++||++|+.+.|.+ .++.+.+.. ++.++.|+++.+.
T Consensus 19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~---------------------- 74 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGE---------------------- 74 (130)
T ss_dssp HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTT----------------------
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcc----------------------
Confidence 4555556789 99999999999999999998 666666544 3677777766421
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
...+++.|++.++|+++++|++|+++.+
T Consensus 75 ~~~~~~~~~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 75 GVELRKKYGVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp HHHHHHHTTCCSSCEEEEECTTSCEEEE
T ss_pred hHHHHHHcCCCCCCEEEEECCCCcEEEE
Confidence 2478999999999999999999998864
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9.9e-12 Score=100.07 Aligned_cols=69 Identities=16% Similarity=0.444 Sum_probs=61.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.|++
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~------------------------~l~~~~~v 83 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVP------------------------EVSEKYEI 83 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCH------------------------HHHHHcCC
Confidence 488 9999999999999999999999999873 4899999987654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|++++++ +|+++.+
T Consensus 84 ~~~Pt~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 84 SSVPTFLFFK-NSQKIDR 100 (153)
T ss_dssp CSSSEEEEEE-TTEEEEE
T ss_pred CCCCEEEEEE-CCEEEEE
Confidence 9999999997 9998764
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=99.93 Aligned_cols=74 Identities=19% Similarity=0.431 Sum_probs=59.2
Q ss_pred ecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 32 ~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.+++.+|+ ++|+||++||++|+.+.|.|.++.+++ ++.++.|+++... .++
T Consensus 34 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~------------------------~l~ 85 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHP------------------------KLN 85 (133)
T ss_dssp HHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCH------------------------HHH
T ss_pred HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchH------------------------HHH
Confidence 34566789 999999999999999999998877765 3778888876553 688
Q ss_pred hhcCCCCcceEEEE-CCCCe--EEec
Q 018808 111 ELFKVMGIPHLVIL-DENGK--VLSD 133 (350)
Q Consensus 111 ~~~~v~~~P~~~li-d~~G~--v~~~ 133 (350)
+.|++.++|+++++ +++|+ ++.+
T Consensus 86 ~~~~v~~~Pt~~~~~~~~g~g~~~~~ 111 (133)
T 3cxg_A 86 DQHNIKALPTFEFYFNLNNEWVLVHT 111 (133)
T ss_dssp HHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred HhcCCCCCCEEEEEEecCCCeEEEEE
Confidence 99999999999998 44665 6653
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=96.72 Aligned_cols=67 Identities=30% Similarity=0.511 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ .+.++.|+++... .+++.|++
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~v 87 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQ------------------------SLGGQYGV 87 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCH------------------------HHHHHcCC
Confidence 467 99999999999999999999999999875 4889999887654 68899999
Q ss_pred CCcceEEEECCCCe
Q 018808 116 MGIPHLVILDENGK 129 (350)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (350)
.++|++++++++|+
T Consensus 88 ~~~Pt~~~~~~~~~ 101 (130)
T 2dml_A 88 QGFPTIKIFGANKN 101 (130)
T ss_dssp CSSSEEEEESSCTT
T ss_pred CccCEEEEEeCCCC
Confidence 99999999988886
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=100.01 Aligned_cols=70 Identities=20% Similarity=0.543 Sum_probs=62.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.+++++++. ++.++.|+++... .+++.|++
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~i 116 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHP------------------------AVAGRHRI 116 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTST------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccH------------------------HHHHHcCC
Confidence 567 99999999999999999999999999975 4899999987654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 117 ~~~Pt~~~~-~~G~~~~~ 133 (155)
T 2ppt_A 117 QGIPAFILF-HKGRELAR 133 (155)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-eCCeEEEE
Confidence 999999999 79998764
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=94.29 Aligned_cols=69 Identities=22% Similarity=0.572 Sum_probs=60.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|+ ++|+||++||++|+.+.|.|.++++++++ +.++.|+++... .+++.|++
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~~~vd~~~~~------------------------~l~~~~~v 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESP------------------------DIAKECEV 81 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT---SEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCH------------------------HHHHHCCC
Confidence 578 99999999999999999999999998853 889999887654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 82 ~~~Pt~~~~-~~G~~~~~ 98 (114)
T 2oe3_A 82 TAMPTFVLG-KDGQLIGK 98 (114)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCeEEEE
Confidence 999999887 89998763
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-12 Score=97.28 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=60.6
Q ss_pred CCCEEEEEEecc-------CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 196 EGKTIGLYFSMS-------SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 196 ~gk~vlv~f~~~-------~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
.+++++|+||++ ||++|+.+.|.|.++++++++. +.++.|++++.. .+ . +...+
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~-~~---~------------d~~~~ 83 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKP-YW---K------------DPNND 83 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHH-HH---H------------CTTCH
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCch-hh---h------------chhHH
Confidence 488999999999 9999999999999998888643 999999986321 11 0 12245
Q ss_pred HHHHcCCCCccEEEEECCCCCEE
Q 018808 269 LARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 269 ~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
++++|+|.++|++++++..+++.
T Consensus 84 ~~~~~~i~~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 84 FRKNLKVTAVPTLLKYGTPQKLV 106 (123)
T ss_dssp HHHHHCCCSSSEEEETTSSCEEE
T ss_pred HHHHCCCCeeCEEEEEcCCceEe
Confidence 78889999999999997744443
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=93.35 Aligned_cols=69 Identities=25% Similarity=0.540 Sum_probs=60.9
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.+++++ ++.++.|+++... .+++.|++.
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVA------------------------AVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTH------------------------HHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchH------------------------HHHHHcCCC
Confidence 78 99999999999999999999999999875 4889999887653 688999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 78 ~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADD 93 (112)
T ss_dssp BSSEEEEE-ETTEEEEE
T ss_pred cccEEEEE-ECCeEEEE
Confidence 99998887 89998764
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=95.40 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=65.2
Q ss_pred cCCceeecC-CC--CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 26 SNGDQVKLD-SL--KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 26 ~~g~~~~l~-~~--~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
.+|+..++. .+ .++ ++|+||++||++|+.+.|.|.++++++ . ++.++.|+++...
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~--~v~~~~vd~~~~~------------------ 66 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K--DVTFIKVDVDKNG------------------ 66 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T--TSEEEEEETTTCH------------------
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C--CeEEEEEECCCCH------------------
Confidence 344444444 22 478 999999999999999999999999998 2 5899999987664
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECC---CCeEEec
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDE---NGKVLSD 133 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~---~G~v~~~ 133 (350)
.+++.|++.++|+++++++ +|+++.+
T Consensus 67 ------~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 67 ------NAADAYGVSSIPALFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp ------HHHHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred ------HHHHhcCCCCCCEEEEEeCCCCcceEEEe
Confidence 6889999999999999965 3877763
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-12 Score=111.58 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+|||+||++|+.+.|.+.++++++.+. +.++.|++|.+. ..+++++|+|
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~---------------------~~~l~~~~~I 89 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNK---------------------NKALCAKYDV 89 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTT---------------------THHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCcc---------------------CHHHHHhCCC
Confidence 4689999999999999999999999999999765 889999988432 2668999999
Q ss_pred CCccEEEEECCCCCEE
Q 018808 276 STLPTLVIIGPDGKTL 291 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~ 291 (350)
.++|++++++ +|+++
T Consensus 90 ~~~Pt~~~~~-~g~~v 104 (298)
T 3ed3_A 90 NGFPTLMVFR-PPKID 104 (298)
T ss_dssp CBSSEEEEEE-CCCC-
T ss_pred CccceEEEEE-CCcee
Confidence 9999999995 56643
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-12 Score=97.33 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=59.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|++
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v 73 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYP------------------------QTCQKAGI 73 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCH------------------------HHHHHcCC
Confidence 467 99999999999999999999999999975 4899999987664 68889999
Q ss_pred CCcceEEEECCCCe
Q 018808 116 MGIPHLVILDENGK 129 (350)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (350)
.++|++++++++|.
T Consensus 74 ~~~Pt~~~~~~~~~ 87 (122)
T 3aps_A 74 KAYPSVKLYQYERA 87 (122)
T ss_dssp CSSSEEEEEEEEGG
T ss_pred CccceEEEEeCCCc
Confidence 99999999976665
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-12 Score=93.20 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+|+++|||+|+...|.++++.++ .+ +.++.|.+|..+. ...+++.+|||.
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~---v~~~~vdVde~r~-------------------~Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--RD---MDGYYLIVQQERD-------------------LSDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HT---CCEEEEEGGGGHH-------------------HHHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CC---ceEEEEEeecCch-------------------hhHHHHHHhCCc
Confidence 68999999999999999999999999874 22 8888888874322 235689999999
Q ss_pred C-ccEEEEECCCCCEEeccch
Q 018808 277 T-LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~-~P~~~lid~~G~i~~~~~~ 296 (350)
+ .|+++++ ++|+++.+..-
T Consensus 80 h~sPq~il~-k~G~~v~~~SH 99 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNRDH 99 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEEEG
T ss_pred cCCCeEEEE-ECCEEEEEeec
Confidence 5 9999999 99999988544
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=94.66 Aligned_cols=74 Identities=16% Similarity=0.400 Sum_probs=58.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|+||++||++|+.+.|.|.+++++++. .+..++++...+ .+....+++.|++
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~----~v~~~~~~~~~~------------------~~~~~~~~~~~~i 85 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA----HIYFINSEEPSQ------------------LNDLQAFRSRYGI 85 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC----CCEEEETTCGGG------------------HHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC----eEEEEECCCcCc------------------HHHHHHHHHHcCC
Confidence 567 99999999999999999999999998853 355666654321 2334578899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 86 ~~~Pt~~~~-~~G~~~~~ 102 (118)
T 1zma_A 86 PTVPGFVHI-TDGQINVR 102 (118)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred CCCCeEEEE-ECCEEEEE
Confidence 999999999 58987754
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=97.49 Aligned_cols=71 Identities=24% Similarity=0.548 Sum_probs=62.4
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
..+|+ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.|
T Consensus 43 ~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~------------------------~~~~~~ 95 (139)
T 3d22_A 43 SRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELS------------------------DFSASW 95 (139)
T ss_dssp HHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHT
T ss_pred hhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccH------------------------HHHHHc
Confidence 34688 9999999999999999999999999884 4889999987653 688999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 96 EIKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp TCCEESEEEEE-ETTEEEEE
T ss_pred CCCcccEEEEE-cCCeEEEE
Confidence 99999999998 89998864
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=95.11 Aligned_cols=90 Identities=21% Similarity=0.426 Sum_probs=69.6
Q ss_pred cCccCCcee-ccCC-ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 16 SSSARDFLI-RSNG-DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 16 g~~~p~f~~-~~~g-~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
+.++|.-.+ ..+. +.+.-.--.++ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++...
T Consensus 13 ~~~~~~~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~--------- 80 (125)
T 1r26_A 13 RMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNS--------- 80 (125)
T ss_dssp CCSSCCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCH---------
T ss_pred eeeccccceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCH---------
Confidence 445554433 4444 44333224677 9999999999999999999999999984 4899999987654
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 81 ---------------~l~~~~~v~~~Pt~~i~-~~G~~~~~ 105 (125)
T 1r26_A 81 ---------------EIVSKCRVLQLPTFIIA-RSGKMLGH 105 (125)
T ss_dssp ---------------HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ---------------HHHHHcCCCcccEEEEE-eCCeEEEE
Confidence 68899999999998888 89988763
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-13 Score=108.99 Aligned_cols=90 Identities=27% Similarity=0.456 Sum_probs=65.0
Q ss_pred cCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcc
Q 018808 19 ARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 97 (350)
Q Consensus 19 ~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~ 97 (350)
.+++....-.+.++....+|| ++|+||++||++|+.+.|.|.++.+.+.. ++.++.|+++...+
T Consensus 27 ~~~i~w~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~------------- 91 (164)
T 1sen_A 27 GDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEE------------- 91 (164)
T ss_dssp CTTSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGS-------------
T ss_pred cccccccCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCch-------------
Confidence 444444221256666677899 99999999999999999999987766543 25577777664432
Q ss_pred cccCChhhHHHHHhhcCC--CCcceEEEECCCCeEEec
Q 018808 98 VPFSDSETRDKLDELFKV--MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v--~~~P~~~lid~~G~v~~~ 133 (350)
.++..|++ .++|+++++|++|+++.+
T Consensus 92 ----------~~~~~~~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 92 ----------PKDEDFSPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp ----------CSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred ----------HHHHHhcccCCcCCeEEEECCCCCEEEE
Confidence 13445666 679999999999998764
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=90.42 Aligned_cols=71 Identities=31% Similarity=0.660 Sum_probs=61.8
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+++ ++|+||++||++|+.+.|.|.++.++++. ++.++.++++... .+++.|+
T Consensus 18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~ 71 (106)
T 1xwb_A 18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECE------------------------DIAMEYN 71 (106)
T ss_dssp HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCH------------------------HHHHHTT
T ss_pred cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchH------------------------HHHHHcC
Confidence 4678 99999999999999999999999999863 5999999987653 6889999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+++.+
T Consensus 72 v~~~Pt~~~~-~~G~~~~~ 89 (106)
T 1xwb_A 72 ISSMPTFVFL-KNGVKVEE 89 (106)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-cCCcEEEE
Confidence 9999998887 78988764
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=91.14 Aligned_cols=70 Identities=29% Similarity=0.595 Sum_probs=62.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ ++.++.++++... .+++.|++
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 70 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENP------------------------KTAMRYRV 70 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCH------------------------hHHHhCCC
Confidence 467 99999999999999999999999999975 4899999987664 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 71 ~~~Pt~~~~-~~g~~~~~ 87 (109)
T 2yzu_A 71 MSIPTVILF-KDGQPVEV 87 (109)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-eCCcEeee
Confidence 999999999 89998763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=110.01 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=62.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|+ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++... .+++.|+|
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v 78 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQ------------------------MIAAQFGL 78 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCH------------------------HHHHTTTC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCH------------------------HHHHHcCC
Confidence 478 99999999999999999999999999975 4899999988664 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 79 ~~~Pt~~~~-~~G~~~~~ 95 (287)
T 3qou_A 79 RAIPTVYLF-QNGQPVDG 95 (287)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CCCCeEEEE-ECCEEEEE
Confidence 999999999 79988764
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=94.08 Aligned_cols=69 Identities=29% Similarity=0.634 Sum_probs=60.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ +.++.|+++... .+++.|++
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~------------------------~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELK------------------------PIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---cEEEEEECCCCH------------------------HHHHHcCC
Confidence 578 99999999999999999999999998863 889999887654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 86 ~~~Pt~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKDR 102 (122)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCEEEEE
Confidence 999998888 89998763
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=84.88 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=53.1
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCcc
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 279 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 279 (350)
+.|.||++||++|+.+.|.+.++.+++..+ +.++.|+ + .++.++|++.++|
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~-~-------------------------~~~~~~~~v~~~P 52 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK-E-------------------------MDQILEAGLTALP 52 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC-S-------------------------HHHHHHHTCSSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec-C-------------------------HHHHHHCCCCcCC
Confidence 458999999999999999999999988753 8888775 1 5578899999999
Q ss_pred EEEEECCCCCEEec
Q 018808 280 TLVIIGPDGKTLHS 293 (350)
Q Consensus 280 ~~~lid~~G~i~~~ 293 (350)
++++ +|+++.+
T Consensus 53 t~~~---~G~~~~~ 63 (77)
T 1ilo_A 53 GLAV---DGELKIM 63 (77)
T ss_dssp CEEE---TTEEEEC
T ss_pred EEEE---CCEEEEc
Confidence 9988 8998877
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=94.68 Aligned_cols=72 Identities=21% Similarity=0.501 Sum_probs=60.3
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
+.+|+ ++|+||++||++|+.+.|.+.+++++++ ++.++.++++... ..+++.|
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~ 87 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQEN-----------------------KTLAKEL 87 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTT-----------------------HHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcch-----------------------HHHHHHc
Confidence 34788 9999999999999999999999999886 3788989886321 2688999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
++.++|+++++ ++|+++.+
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1faa_A 88 GIRVVPTFKIL-KENSVVGE 106 (124)
T ss_dssp CCSSSSEEEEE-ETTEEEEE
T ss_pred CCCeeeEEEEE-eCCcEEEE
Confidence 99999997666 89998764
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-12 Score=100.21 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=61.3
Q ss_pred CCc-EEEEEecCC--ChhhhhhhHHHHHHHHHhccCCC-EEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGD-FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~--C~~C~~~~~~l~~l~~~~~~~~~-~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
.++ ++|+||++| |++|+.+.|.|.++.++|.. + +.++.|++|.. ..++..
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~------------------------~~lA~~ 86 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQS------------------------EAIGDR 86 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHH------------------------HHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCC------------------------HHHHHH
Confidence 456 999999999 99999999999999999965 4 88888876544 479999
Q ss_pred cCCCCcceEEEECCCCeEEec
Q 018808 113 FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~ 133 (350)
|+|+++||++++ ++|+++.+
T Consensus 87 ygV~sIPTlilF-k~G~~v~~ 106 (140)
T 2qgv_A 87 FGAFRFPATLVF-TGGNYRGV 106 (140)
T ss_dssp HTCCSSSEEEEE-ETTEEEEE
T ss_pred cCCccCCEEEEE-ECCEEEEE
Confidence 999999999999 89999874
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=94.83 Aligned_cols=70 Identities=26% Similarity=0.618 Sum_probs=60.3
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
+.+|+ ++|+||++||++|+.+.|.|.++++++ ++.++.|+++... .+++.|
T Consensus 30 ~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~------------------------~~~~~~ 81 (117)
T 2xc2_A 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLE------------------------ETARKY 81 (117)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSH------------------------HHHHHT
T ss_pred hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccH------------------------HHHHHc
Confidence 34788 999999999999999999999998877 3889999887553 688999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
++.++|+++++ ++|+++.+
T Consensus 82 ~v~~~Pt~~~~-~~G~~~~~ 100 (117)
T 2xc2_A 82 NISAMPTFIAI-KNGEKVGD 100 (117)
T ss_dssp TCCSSSEEEEE-ETTEEEEE
T ss_pred CCCccceEEEE-eCCcEEEE
Confidence 99999998888 79988764
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=90.17 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=64.9
Q ss_pred CCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChh
Q 018808 27 NGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (350)
Q Consensus 27 ~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (350)
+++.+..... .++ ++|+||++||++|+.+.|.+.++++++++ ++.++.++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~--------------------- 62 (105)
T 1fb6_A 6 NDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAP--------------------- 62 (105)
T ss_dssp CTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH---------------------
T ss_pred hhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchH---------------------
Confidence 4444443222 467 99999999999999999999999999875 4889999887654
Q ss_pred hHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 105 TRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 63 ---~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (105)
T 1fb6_A 63 ---GIATQYNIRSIPTVLFF-KNGERKES 87 (105)
T ss_dssp ---HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ---HHHHhCCCCcccEEEEE-eCCeEEEE
Confidence 68899999999999888 79988763
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-13 Score=99.71 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=64.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|.||++||++|+.+.|.+.++.++++++ +.++.|++|.+ .++.++|++
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 71 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDEN-----------------------PNTAAQYGI 71 (106)
Confidence 4689999999999999999999999999888753 88888877642 457889999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 72 ~~~Pt~~~~-~~g~~~~~~~g~ 92 (106)
T 2yj7_A 72 RSIPTLLLF-KNGQVVDRLVGA 92 (106)
Confidence 999999999 899998877763
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=105.08 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=67.7
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
+++++.+......|+ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 101 ~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~-------------------- 158 (210)
T 3apq_A 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDR-------------------- 158 (210)
T ss_dssp ECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCH--------------------
T ss_pred EecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccH--------------------
Confidence 345555544445778 99999999999999999999999999975 4899999987664
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.|++.++|+++++ ++|+++.
T Consensus 159 ----~l~~~~~v~~~Pt~~~~-~~G~~~~ 182 (210)
T 3apq_A 159 ----MLCRMKGVNSYPSLFIF-RSGMAAV 182 (210)
T ss_dssp ----HHHHHTTCCSSSEEEEE-CTTSCCE
T ss_pred ----HHHHHcCCCcCCeEEEE-ECCCcee
Confidence 68899999999999999 8998654
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=111.25 Aligned_cols=160 Identities=15% Similarity=0.243 Sum_probs=105.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.++++.++++ +.++.|+++... .+++.|+|.
T Consensus 21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~--v~~~~vd~~~~~------------------------~l~~~~~v~ 74 (481)
T 3f8u_A 21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKVDCTANT------------------------NTCNKYGVS 74 (481)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--CCEEEEETTTCH------------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc--eEEEEEECCCCH------------------------HHHHhcCCC
Confidence 37 999999999999999999999999999764 889999988764 799999999
Q ss_pred CcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCceeecccc-
Q 018808 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDL- 195 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v~l~~~- 195 (350)
++|+++++ ++|+.+.++ .| +.+...+...+... ++. .. ...... -.+..+
T Consensus 75 ~~Ptl~~~-~~g~~~~~~-------~G----~~~~~~l~~~~~~~------------~~~---~~-~~i~~~-~~~~~~~ 125 (481)
T 3f8u_A 75 GYPTLKIF-RDGEEAGAY-------DG----PRTADGIVSHLKKQ------------AGP---AS-VPLRTE-EEFKKFI 125 (481)
T ss_dssp EESEEEEE-ETTEEEEEC-------CS----CSSHHHHHHHHHHH------------TSC---SE-EEECSH-HHHHHHT
T ss_pred CCCEEEEE-eCCceeeee-------cC----ccCHHHHHHHHHhh------------ccc---Cc-eecCCH-HHHHHHH
Confidence 99999999 788655431 11 24555555444321 110 01 000000 011111
Q ss_pred -CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 196 -EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 196 -~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+.++|.|+.++|..| ...+.+++..+++. +.+..+ .+ .+++++|+
T Consensus 126 ~~~~~~vv~~~~~~~~~~---~~~f~~~a~~~~~~---~~F~~~-~~-------------------------~~~~~~~~ 173 (481)
T 3f8u_A 126 SDKDASIVGFFDDSFSEA---HSEFLKAASNLRDN---YRFAHT-NV-------------------------ESLVNEYD 173 (481)
T ss_dssp TSSSCEEEEEESCTTCHH---HHHHHHHHHHHTTT---SCEEEE-CC-------------------------HHHHHHHC
T ss_pred hcCCcEEEEEECCCccch---HHHHHHHHHHhccC---ceEEEE-CC-------------------------HHHHHHhC
Confidence 23567777888877654 45677777888655 555433 22 45778888
Q ss_pred CCCccEEEEEC
Q 018808 275 LSTLPTLVIIG 285 (350)
Q Consensus 275 v~~~P~~~lid 285 (350)
+...| ++++-
T Consensus 174 v~~~~-i~~~~ 183 (481)
T 3f8u_A 174 DNGEG-IILFR 183 (481)
T ss_dssp SSSEE-EEEEC
T ss_pred CCCCc-EEEEe
Confidence 87665 55553
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=92.44 Aligned_cols=69 Identities=22% Similarity=0.570 Sum_probs=60.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++++ +.++.++++... .+++.|++
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------------~~~~~~~v 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENP------------------------DIAARYGV 67 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCH------------------------HHHHhCCc
Confidence 567 99999999999999999999999998863 889999887654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 68 ~~~Pt~~~~-~~g~~~~~ 84 (104)
T 2e0q_A 68 MSLPTVIFF-KDGEPVDE 84 (104)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred cccCEEEEE-ECCeEhhh
Confidence 999999999 89998763
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-11 Score=94.98 Aligned_cols=82 Identities=26% Similarity=0.510 Sum_probs=62.0
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
..+++.+......++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~-------------------- 94 (140)
T 1v98_A 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHP-------------------- 94 (140)
T ss_dssp ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCH--------------------
T ss_pred cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCH--------------------
Confidence 456666655545566 99999999999999999999999999975 4999999987664
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 95 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~ 119 (140)
T 1v98_A 95 ----GLAARYGVRSVPTLVLF-RRGAPVAT 119 (140)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHHCCCCccCEEEEE-eCCcEEEE
Confidence 68899999999999999 79998763
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-13 Score=103.49 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=65.4
Q ss_pred CceeecCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 28 GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 28 g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.+.+++...+|+ ++|+||++||++|+.+.|.+ .++.+.++. ++.++.|+++.+.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~-------------------- 66 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPE-------------------- 66 (130)
Confidence 667888888999 99999999999999999999 888887764 4777777775331
Q ss_pred hhHHHHHhhcCCCCcceEEEECC-CCeE
Q 018808 104 ETRDKLDELFKVMGIPHLVILDE-NGKV 130 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~-~G~v 130 (350)
...+++.|++.++|+++++|+ +|++
T Consensus 67 --~~~~~~~~~v~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 67 --GQELARRYRVPGTPTFVFLVPKAGAW 92 (130)
Confidence 137889999999999999995 5887
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=92.12 Aligned_cols=70 Identities=30% Similarity=0.664 Sum_probs=61.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.++++. ++.++.|+++... .+++.|++
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~i 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNP------------------------ETARNFQV 82 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHhcCC
Confidence 467 99999999999999999999999999865 4889999987654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 83 ~~~Pt~~~~-~~g~~~~~ 99 (121)
T 2i1u_A 83 VSIPTLILF-KDGQPVKR 99 (121)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999998 69988764
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=89.66 Aligned_cols=71 Identities=28% Similarity=0.649 Sum_probs=61.2
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
+..++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++... .+++.|
T Consensus 16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~------------------------~~~~~~ 68 (104)
T 2vim_A 16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNE------------------------EAAAKY 68 (104)
T ss_dssp TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHT
T ss_pred hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCH------------------------HHHHHc
Confidence 34678 9999999999999999999999999885 4889999987653 688899
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
++.++|+++++ ++|+++.+
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~~ 87 (104)
T 2vim_A 69 SVTAMPTFVFI-KDGKEVDR 87 (104)
T ss_dssp TCCSSSEEEEE-ETTEEEEE
T ss_pred CCccccEEEEE-eCCcEEEE
Confidence 99999998888 58988764
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=91.06 Aligned_cols=69 Identities=26% Similarity=0.567 Sum_probs=60.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.|++
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~------------------------~~~~~~~v 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVS------------------------EVTEKENI 77 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTH------------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCH------------------------HHHHHcCC
Confidence 678 9999999999999999999999999885 3889999887654 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 78 ~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 78 TSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCcEEEE
Confidence 999998887 69988763
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=94.32 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=61.9
Q ss_pred ccCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC---CCEEEEEEECCCCHHHHHhHHhcCCCcccc
Q 018808 25 RSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ---GDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99 (350)
Q Consensus 25 ~~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~ 99 (350)
.++++.++... .+++ ++|+||++||++|+.+.|.|.+++++++.. .++.++.|+++...
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 74 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---------------- 74 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence 45666666553 4678 999999999999999999999999999762 24888888876541
Q ss_pred cCChhhHHHHHhhcCCCCcceEEEECCCCe
Q 018808 100 FSDSETRDKLDELFKVMGIPHLVILDENGK 129 (350)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (350)
+++ ++.++|++++++++|+
T Consensus 75 ---------~~~--~v~~~Pt~~~~~~~~~ 93 (121)
T 2djj_A 75 ---------VPD--EIQGFPTIKLYPAGAK 93 (121)
T ss_dssp ---------CSS--CCSSSSEEEEECSSCT
T ss_pred ---------ccc--ccCcCCeEEEEeCcCC
Confidence 222 8999999999987766
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=93.05 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+.++ ++.++.|+++... .+++.|++
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~------------------------~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARP------------------------ELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCH------------------------HHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCH------------------------HHHHHcCC
Confidence 467 9999999999999999999999988875 3778888876543 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 71 ~~~Pt~~~~-~~G~~v~~ 87 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAKV 87 (110)
T ss_dssp CSSCEEEEE-ESSSEEEE
T ss_pred cccCEEEEE-ECCEEEEE
Confidence 999999999 89988764
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=97.68 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=58.7
Q ss_pred CCCEEEEEEec-------cCCccChhhHHHHHHHHHHHhcCC--CcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhH
Q 018808 196 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKG--ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (350)
Q Consensus 196 ~gk~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
++.+|||+||| .||++|+.+.|.++++++++..+. .++.+..|++|.+
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~----------------------- 92 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV----------------------- 92 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC-----------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC-----------------------
Confidence 34689999999 499999999999999999997210 2389999998865
Q ss_pred HHHHHHcCCCCccEEEEECCCCC
Q 018808 267 EKLARYFELSTLPTLVIIGPDGK 289 (350)
Q Consensus 267 ~~~~~~~~v~~~P~~~lid~~G~ 289 (350)
.+++++|||.++||++++ ++|.
T Consensus 93 ~~la~~~~I~siPtl~~F-~~g~ 114 (178)
T 3ga4_A 93 PQLVKDLKLQNVPHLVVY-PPAE 114 (178)
T ss_dssp HHHHHHTTCCSSCEEEEE-CCCC
T ss_pred HHHHHHcCCCCCCEEEEE-cCCC
Confidence 568999999999999999 6663
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-12 Score=109.34 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++|||+||++||++|+.+.|.|.+++.++.. +.|+.|+++. ..+++.|+|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~----v~f~kVd~d~------------------------~~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN------------------------TGAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT----SEEEEEEHHH------------------------HCCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----CEEEEEeCCc------------------------HHHHHHCCC
Confidence 478999999999999999999999999999863 8888887652 125678999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|.
T Consensus 184 ~~~PTll~~-~~G~~v~~~vG~ 204 (245)
T 1a0r_P 184 DVLPTLLVY-KGGELLSNFISV 204 (245)
T ss_dssp TTCSEEEEE-ETTEEEEEETTG
T ss_pred CCCCEEEEE-ECCEEEEEEeCC
Confidence 999999999 699999888774
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-12 Score=100.45 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=63.6
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+|+++|+||++||++|+.+.|.|.++.++++ + +.++.|++|.. .++.++|+
T Consensus 34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~-----------------------~~~~~~~~ 86 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--G--AVFLKVDVDEL-----------------------KEVAEKYN 86 (130)
T ss_dssp TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--T--BCCEECCTTTS-----------------------GGGHHHHT
T ss_pred hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--CEEEEEeccch-----------------------HHHHHHcC
Confidence 357899999999999999999999999999886 3 88888887743 34788999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.++|+++++ ++|+++.+..|
T Consensus 87 v~~~Pt~~~~-~~g~~~~~~~g 107 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADKVVG 107 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBCCCT
T ss_pred CCccceEEEE-eCCeEEEEEeC
Confidence 9999998887 89999887766
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=90.54 Aligned_cols=70 Identities=31% Similarity=0.629 Sum_probs=61.5
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
..|+ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++... .+++.|+
T Consensus 24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~------------------------~~~~~~~ 76 (113)
T 1ti3_A 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELK------------------------AVAEEWN 76 (113)
T ss_dssp TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCH------------------------HHHHHHH
T ss_pred hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccH------------------------HHHHhCC
Confidence 4588 9999999999999999999999999885 4899999987654 6888999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+++.+
T Consensus 77 v~~~Pt~~~~-~~G~~~~~ 94 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCEEEEE
Confidence 9999999999 79998764
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=94.63 Aligned_cols=71 Identities=23% Similarity=0.562 Sum_probs=61.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.+++++++.+ ++.++.|+++... .+++.|++
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~------------------------~~~~~~~v 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQS------------------------QIAQEVGI 86 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCH------------------------HHHHHcCC
Confidence 567 999999999999999999999999888764 3889999987654 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 87 ~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 87 RAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCeEEee
Confidence 999999998 69988764
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=111.84 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC---CcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.+++++|.|||+||++|+.+.|.+.++++++++.+ .++.++.|+++.. .+++++
T Consensus 21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~-----------------------~~l~~~ 77 (382)
T 2r2j_A 21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH-----------------------SDIAQR 77 (382)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC-----------------------HHHHHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc-----------------------HHHHHh
Confidence 47899999999999999999999999999996431 2389999988754 568999
Q ss_pred cCCCCccEEEEECCCCCEEec-cch
Q 018808 273 FELSTLPTLVIIGPDGKTLHS-NVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~-~~~ 296 (350)
|+|.++||++++ ++|+++.+ +.|
T Consensus 78 ~~v~~~Pt~~~f-~~G~~~~~~~~G 101 (382)
T 2r2j_A 78 YRISKYPTLKLF-RNGMMMKREYRG 101 (382)
T ss_dssp TTCCEESEEEEE-ETTEEEEEECCS
T ss_pred cCCCcCCEEEEE-eCCcEeeeeecC
Confidence 999999999998 78988764 555
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=104.37 Aligned_cols=84 Identities=31% Similarity=0.601 Sum_probs=68.4
Q ss_pred eeccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCccccc
Q 018808 23 LIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 23 ~~~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~ 100 (350)
...++.+.+...-+ .++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++...
T Consensus 14 ~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~----------------- 74 (222)
T 3dxb_A 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP----------------- 74 (222)
T ss_dssp CEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCT-----------------
T ss_pred ceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCH-----------------
Confidence 44566666654322 567 99999999999999999999999999976 4889999987664
Q ss_pred CChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 75 -------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 99 (222)
T 3dxb_A 75 -------GTAPKYGIRGIPTLLLF-KNGEVAAT 99 (222)
T ss_dssp -------TTGGGGTCCSBSEEEEE-ETTEEEEE
T ss_pred -------HHHHHcCCCcCCEEEEE-ECCeEEEE
Confidence 57888999999999999 58988763
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-11 Score=90.58 Aligned_cols=69 Identities=29% Similarity=0.657 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++... .+++.|++
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~------------------------~~~~~~~v 79 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELK------------------------DVAEAYNV 79 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCH------------------------HHHHHcCC
Confidence 478 9999999999999999999999999986 3889999887553 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 80 ~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 80 EAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcCcEEEEE-eCCeEEEE
Confidence 999999998 79988764
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-13 Score=100.70 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=52.5
Q ss_pred eeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 189 ~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
.+++++..+|+++|.|||+|||+|+.+.|.+.+++++++ .+.+..|.. .+...+
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~-------------------~~~~~~ 57 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGP-------------------GTPQAQ 57 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCT-------------------TSCCCH
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEecccc-------------------cchhHH
Confidence 455666777888999999999999999999988875442 333332211 011256
Q ss_pred HHHHcCCCCccEEEEECCCCCE
Q 018808 269 LARYFELSTLPTLVIIGPDGKT 290 (350)
Q Consensus 269 ~~~~~~v~~~P~~~lid~~G~i 290 (350)
++++|+|.++||+++ +|+.
T Consensus 58 l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 58 ECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHHTTCCSSSEEEE---TTEE
T ss_pred HHHHcCCeEeCEEEE---CCEE
Confidence 899999999999766 7764
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-12 Score=97.02 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+...+||+||++||++|+.+.+.+...++.... +..+.++.|+++.+.. ..++..|+|
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~---------------------~~la~~~~V 74 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP---------------------PGLELARPV 74 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCC---------------------TTCBCSSCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCc---------------------hhHHHHCCC
Confidence 346899999999999999998765544332110 0115677888775311 235678899
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||+++++ +|+.+.+..|.
T Consensus 75 ~g~PT~i~f~-~G~ev~Ri~G~ 95 (116)
T 3dml_A 75 TFTPTFVLMA-GDVESGRLEGY 95 (116)
T ss_dssp CSSSEEEEEE-TTEEEEEEECC
T ss_pred CCCCEEEEEE-CCEEEeeecCC
Confidence 9999999997 99999998884
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=96.88 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=59.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++|+||++||++|+.+.|.|.+++++++ +.++.|++++..+. ...+....+++.|++.++|
T Consensus 34 vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~---------------~~~d~~~~l~~~~~v~~~P 94 (135)
T 3emx_A 34 AILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGE---------------RELSAARLEMNKAGVEGTP 94 (135)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCH---------------HHHHHHHHHHHHHTCCSSS
T ss_pred EEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhh---------------hhhhhhHHHHHHcCCceeC
Confidence 8999999999999999999999988874 67888887554221 0123456899999999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
++++++ +|+++.+
T Consensus 95 t~~~~~-~G~~v~~ 107 (135)
T 3emx_A 95 TLVFYK-EGRIVDK 107 (135)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred eEEEEc-CCEEEEE
Confidence 988885 9998774
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-11 Score=94.35 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHH--HHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVY--NELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~--~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
...|| ++|+||++||++|+.+.|.+.+.. .++.+ ..++.|++|.+.. .++.
T Consensus 41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~---~~fv~V~vD~e~~-----------------------~~~~ 94 (151)
T 3ph9_A 41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ---NKFIMLNLMHETT-----------------------DKNL 94 (151)
T ss_dssp HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH---HTCEEEEESSCCS-----------------------CGGG
T ss_pred HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh---cCeEEEEecCCch-----------------------hhHh
Confidence 34688 999999999999999999887532 12221 2266666653321 2345
Q ss_pred hcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHH
Q 018808 112 LFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEER 163 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~ 163 (350)
.|++.++|++++++++|+++.+. +-..+...|.+.......+++....
T Consensus 95 ~~~v~~~PT~~f~~~~G~~v~~~----~G~~~~~~~~~~~~~~~~ll~~~~~ 142 (151)
T 3ph9_A 95 SPDGQYVPRIMFVDPSLTVRADI----AGRYSNRLYTYEPRDLPLLIENMKK 142 (151)
T ss_dssp CTTCCCSSEEEEECTTSCBCTTC----CCSCTTSTTCCCGGGHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCCCEEEEE----eCCcCCcccccchhhHHHHHHHHHH
Confidence 68899999999999999988752 0111122244555666666665443
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=91.95 Aligned_cols=65 Identities=9% Similarity=0.126 Sum_probs=56.2
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.++++ ++.|+.|++|.. +..|++.
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~---------------------------~~~~~v~ 72 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC---------------------------IQHYHDN 72 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT---------------------------STTCCGG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---------------------------HHHCCCC
Confidence 45 9999999999999999999999999986 388998887532 2569999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+.+.+
T Consensus 73 ~~PT~~~f-k~G~~v~~ 88 (118)
T 3evi_A 73 CLPTIFVY-KNGQIEAK 88 (118)
T ss_dssp GCSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 89998875
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=91.36 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=56.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.+|+|+|+|+++||++|+.+.... .++.+.+++. +.++.++.++ +....+.+.
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~---------------------~~~~~l~~~ 96 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDS---------------------EEGQRYIQF 96 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSS---------------------HHHHHHHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCC---------------------HhHHHHHHH
Confidence 489999999999999999986543 3344444333 7777776653 123568899
Q ss_pred cCCCCccEEEEECCC-CCEEecc
Q 018808 273 FELSTLPTLVIIGPD-GKTLHSN 294 (350)
Q Consensus 273 ~~v~~~P~~~lid~~-G~i~~~~ 294 (350)
|++.++|++++||++ |+.+.+.
T Consensus 97 y~v~~~P~~~fld~~~G~~l~~~ 119 (153)
T 2dlx_A 97 YKLGDFPYVSILDPRTGQKLVEW 119 (153)
T ss_dssp HTCCSSSEEEEECTTTCCCCEEE
T ss_pred cCCCCCCEEEEEeCCCCcEeeec
Confidence 999999999999999 8776654
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=104.53 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=62.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|++|||.||++||++|+.+.|.|.+++.++. . +.++.|+++ + ..+++.|+|
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~--v~f~~vd~~-~-----------------------~~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--M--VKFCKIRAS-N-----------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--T--SEEEEEEHH-H-----------------------HTCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--C--eEEEEEECC-c-----------------------HHHHHHCCC
Confidence 46899999999999999999999999998885 2 888888765 1 235678999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|.
T Consensus 171 ~~~PTl~~~-~~G~~v~~~~G~ 191 (217)
T 2trc_P 171 DVLPTLLVY-KGGELISNFISV 191 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEETTG
T ss_pred CCCCEEEEE-ECCEEEEEEeCC
Confidence 999999999 699999888774
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=94.73 Aligned_cols=82 Identities=29% Similarity=0.564 Sum_probs=61.0
Q ss_pred ccCCceeecCC-CCCc-EEEEEecCCCh--------------hhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 25 RSNGDQVKLDS-LKGK-IGLYFSASWCG--------------PCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 25 ~~~g~~~~l~~-~~gk-~~v~F~~~~C~--------------~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
.++++.+...- -.|+ ++|+||++||+ +|+.+.|.+.++++++++ ++.++.|+++...
T Consensus 7 ~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~----- 79 (123)
T 1oaz_A 7 HLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP----- 79 (123)
T ss_dssp ECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCT-----
T ss_pred ecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCH-----
Confidence 34445443222 3567 99999999999 999999999999998865 4889999987653
Q ss_pred HHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 80 -------------------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 80 -------------------GTAPKYGIRGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp -------------------TTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred -------------------HHHHHcCCCccCEEEEE-ECCEEEEE
Confidence 57888999999999999 89998763
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=90.40 Aligned_cols=78 Identities=24% Similarity=0.507 Sum_probs=61.1
Q ss_pred CCCc-EEEEEecC-------CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 36 LKGK-IGLYFSAS-------WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 36 ~~gk-~~v~F~~~-------~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
..|+ ++|+||++ ||++|+.+.|.|.++++++++ ++.++.|+++... .+ .+.+.
T Consensus 22 ~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~-~~----------------~d~~~ 82 (123)
T 1wou_A 22 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKP-YW----------------KDPNN 82 (123)
T ss_dssp TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHH-HH----------------HCTTC
T ss_pred hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCch-hh----------------hchhH
Confidence 3588 99999999 999999999999999998865 4899999886422 11 01223
Q ss_pred HHHhhcCCCCcceEEEECCCCeEEe
Q 018808 108 KLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.|++.++|+++++++.+++..
T Consensus 83 ~~~~~~~i~~~Pt~~~~~~~~~~~g 107 (123)
T 1wou_A 83 DFRKNLKVTAVPTLLKYGTPQKLVE 107 (123)
T ss_dssp HHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred HHHHHCCCCeeCEEEEEcCCceEec
Confidence 7888899999999999977555543
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=94.09 Aligned_cols=81 Identities=23% Similarity=0.473 Sum_probs=63.1
Q ss_pred cCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 26 SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 26 ~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.+++.+....-.++ ++|.||++||++|+.+.|.|.++++++++.+ ++.++.++++...
T Consensus 12 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------- 71 (120)
T 1mek_A 12 LRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-------------------- 71 (120)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC--------------------
T ss_pred echhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH--------------------
Confidence 34444432223577 9999999999999999999999999997642 5788888876543
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.+++.|++.++|+++++ ++|+.+
T Consensus 72 ----~~~~~~~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 72 ----DLAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp ----SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred ----HHHHHCCCCcccEEEEE-eCCCcC
Confidence 57888999999999999 677643
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=111.53 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.++++++++.+ +.++.|+++.. .+++++|+|
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~~~-----------------------~~l~~~~~v 84 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN-----------------------QDLCMEHNI 84 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECCCC-----------------------HHHHHhcCC
Confidence 57899999999999999999999999999998755 99999998854 558999999
Q ss_pred CCccEEEEECCCCCE--Eeccch
Q 018808 276 STLPTLVIIGPDGKT--LHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i--~~~~~~ 296 (350)
.++||++++ ++|+. +.++.|
T Consensus 85 ~~~Pt~~~~-~~g~~~~~~~~~G 106 (504)
T 2b5e_A 85 PGFPSLKIF-KNSDVNNSIDYEG 106 (504)
T ss_dssp CSSSEEEEE-ETTCTTCEEECCS
T ss_pred CcCCEEEEE-eCCccccceeecC
Confidence 999999999 66775 555555
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-12 Score=94.65 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=53.7
Q ss_pred ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 29 ~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
..+++++..|+ ++|+||++||++|+.+.|.|.+++++++ .+.+..+.. .+...
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~--------------------~~~~~ 56 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGP--------------------GTPQA 56 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCT--------------------TSCCC
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccc--------------------cchhH
Confidence 34667777888 9999999999999999999988876552 333332211 01123
Q ss_pred HHHhhcCCCCcceEEEECCCCeE
Q 018808 108 KLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~v 130 (350)
.+++.|+|.++|++++ +|+.
T Consensus 57 ~l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 57 QECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHHHTTCCSSSEEEE---TTEE
T ss_pred HHHHHcCCeEeCEEEE---CCEE
Confidence 7999999999999777 7764
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=86.20 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=61.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+|+++||++|+...|.|.++.+. + ++.++.|.++..++ ..+.++..|+|+
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~--~v~~~~vdVde~r~--------------------~Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R--DMDGYYLIVQQERD--------------------LSDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H--TCCEEEEEGGGGHH--------------------HHHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C--CceEEEEEeecCch--------------------hhHHHHHHhCCc
Confidence 56 99999999999999999999999874 2 48899998876643 224699999999
Q ss_pred C-cceEEEECCCCeEEecC
Q 018808 117 G-IPHLVILDENGKVLSDG 134 (350)
Q Consensus 117 ~-~P~~~lid~~G~v~~~~ 134 (350)
+ .|+++++ ++|+++++.
T Consensus 80 h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEE
T ss_pred cCCCeEEEE-ECCEEEEEe
Confidence 5 9999999 999999863
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=104.72 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCEEEEEEeccCCccChhhHHH-------HHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPR-------LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~-------l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
.+++++|+|||+||+ |+.+.|. +.++++.+++.+ +.++.|+++.. .+
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~-----------------------~~ 80 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKE-----------------------AK 80 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTT-----------------------HH
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCC-----------------------HH
Confidence 468999999999999 9999998 888888887755 99999998854 45
Q ss_pred HHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 269 LARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 269 ~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++|+|.++||++++ ++|++. .+.|
T Consensus 81 l~~~~~v~~~Pt~~~~-~~g~~~-~~~G 106 (350)
T 1sji_A 81 LAKKLGFDEEGSLYVL-KGDRTI-EFDG 106 (350)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEE-EECS
T ss_pred HHHhcCCCccceEEEE-ECCcEE-EecC
Confidence 8999999999999999 888844 4444
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=93.25 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=70.0
Q ss_pred hhhhcCccCCceeccCCceeecCC--CCCc-EEEEEec-------CCChhhhhhhHHHHHHHHHhccC---CCEEEEEEE
Q 018808 12 QSLLSSSARDFLIRSNGDQVKLDS--LKGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQ---GDFEVIFVS 78 (350)
Q Consensus 12 ~~~~g~~~p~f~~~~~g~~~~l~~--~~gk-~~v~F~~-------~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~i~ 78 (350)
..+..-..++..+.++..+++.-- -++. ++|+||+ .||++|+.+.|.|.++++.+... +++.|+.|+
T Consensus 9 ~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD 88 (178)
T 3ga4_A 9 DDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVD 88 (178)
T ss_dssp HHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEE
Confidence 334444445666666666665321 1234 9999999 49999999999999999999621 368999999
Q ss_pred CCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCC
Q 018808 79 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENG 128 (350)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G 128 (350)
+|... .++.+|+|+++|+++++ ++|
T Consensus 89 ~d~~~------------------------~la~~~~I~siPtl~~F-~~g 113 (178)
T 3ga4_A 89 VNEVP------------------------QLVKDLKLQNVPHLVVY-PPA 113 (178)
T ss_dssp TTTCH------------------------HHHHHTTCCSSCEEEEE-CCC
T ss_pred CccCH------------------------HHHHHcCCCCCCEEEEE-cCC
Confidence 88775 69999999999999999 555
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=94.74 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHH-H--HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
+.+.+..+..+|| ++|+||++||++|+.+.+. + .++.+.+++ ++.++.|+.+...+-...+..
T Consensus 28 ~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~----------- 94 (173)
T 3ira_A 28 GEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMT----------- 94 (173)
T ss_dssp SHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHH-----------
T ss_pred CHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHH-----------
Confidence 3445556666889 9999999999999998883 2 355555544 377777777655432111110
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+...+++.++|++++++++|++++.
T Consensus 95 -----~~q~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 95 -----VCQIILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp -----HHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred -----HHHHHcCCCCCcceeeECCCCCceee
Confidence 12223599999999999999999885
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=89.48 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|+ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++... +.|++
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~---------------------------~~~~i 78 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI---------------------------EHYHD 78 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC---------------------------SSCCS
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc---------------------------ccCCC
Confidence 457 9999999999999999999999999884 4888888776431 46999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|++++++ +|+++.+
T Consensus 79 ~~~Pt~~~~~-~G~~v~~ 95 (135)
T 2dbc_A 79 NCLPTIFVYK-NGQIEGK 95 (135)
T ss_dssp SCCSEEEEES-SSSCSEE
T ss_pred CCCCEEEEEE-CCEEEEE
Confidence 9999999995 8887654
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=9.6e-11 Score=83.90 Aligned_cols=62 Identities=27% Similarity=0.480 Sum_probs=54.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+++.||++||++|+.+.|.|.++++++++ ++.++.++++.+. .+++.|++.++|
T Consensus 5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~~P 58 (85)
T 1fo5_A 5 KIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENP------------------------QKAMEYGIMAVP 58 (85)
T ss_dssp EEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSC------------------------CTTTSTTTCCSS
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCH------------------------HHHHHCCCcccC
Confidence 78999999999999999999999999874 5999999987653 467789999999
Q ss_pred eEEEECCCCeE
Q 018808 120 HLVILDENGKV 130 (350)
Q Consensus 120 ~~~lid~~G~v 130 (350)
++++ +|++
T Consensus 59 t~~~---~G~~ 66 (85)
T 1fo5_A 59 TIVI---NGDV 66 (85)
T ss_dssp EEEE---TTEE
T ss_pred EEEE---CCEE
Confidence 9999 7876
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.1e-11 Score=84.29 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=54.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+++.||++||++|+.+.|.|.++.+++++ ++.++.++++.+. .+++.|++.++|
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~~P 57 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDR------------------------EKAIEYGLMAVP 57 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCG------------------------GGGGGTCSSCSS
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHhCCceeeC
Confidence 58999999999999999999999999975 4889999887654 577889999999
Q ss_pred eEEEECCCCeE
Q 018808 120 HLVILDENGKV 130 (350)
Q Consensus 120 ~~~lid~~G~v 130 (350)
++++ +|++
T Consensus 58 t~~~---~G~~ 65 (85)
T 1nho_A 58 AIAI---NGVV 65 (85)
T ss_dssp EEEE---TTTE
T ss_pred EEEE---CCEE
Confidence 9999 7776
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=109.40 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCC-----cEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE-----SFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~-----~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
+|++||+|||+||++|+.+.|.+.++++++..... ++.++.|++|.. .++++
T Consensus 42 ~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~-----------------------~~la~ 98 (470)
T 3qcp_A 42 LCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE-----------------------VDLCR 98 (470)
T ss_dssp GSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-----------------------HHHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-----------------------HHHHH
Confidence 47999999999999999999999999999974421 489999998854 45899
Q ss_pred HcCCCCccEEEEECCCCC
Q 018808 272 YFELSTLPTLVIIGPDGK 289 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~ 289 (350)
+|+|.++||++++++.|.
T Consensus 99 ~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 99 KYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HTTCCSSCEEEEEEESSC
T ss_pred HcCCCccCeEEEEECCCc
Confidence 999999999999976553
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=78.20 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+.|+||++||++|+.+.|.+.++.++++. ++.++.|+ + ..+++.|++.++|
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~---~------------------------~~~~~~~~v~~~P 52 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK---E------------------------MDQILEAGLTALP 52 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC---S------------------------HHHHHHHTCSSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec---C------------------------HHHHHHCCCCcCC
Confidence 35899999999999999999999998864 47777775 2 2678899999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
++++ +|+++.+
T Consensus 53 t~~~---~G~~~~~ 63 (77)
T 1ilo_A 53 GLAV---DGELKIM 63 (77)
T ss_dssp CEEE---TTEEEEC
T ss_pred EEEE---CCEEEEc
Confidence 9998 8988764
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-10 Score=94.84 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=57.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccC--CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQ--GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (350)
++|.||++||++|+.+.|.+.+++++++++ +++.++.|+++... .+++.|++.+
T Consensus 137 ~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~v~~ 192 (226)
T 1a8l_A 137 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP------------------------EWADQYNVMA 192 (226)
T ss_dssp EEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH------------------------HHHHHTTCCS
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCH------------------------HHHHhCCCcc
Confidence 499999999999999999999999999732 25899999877543 6889999999
Q ss_pred cceEEEECCCCeEEe
Q 018808 118 IPHLVILDENGKVLS 132 (350)
Q Consensus 118 ~P~~~lid~~G~v~~ 132 (350)
+|+++++ ++|+.+.
T Consensus 193 ~Pt~~~~-~~G~~~~ 206 (226)
T 1a8l_A 193 VPKIVIQ-VNGEDRV 206 (226)
T ss_dssp SCEEEEE-ETTEEEE
T ss_pred cCeEEEE-eCCceeE
Confidence 9998888 6887765
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.5e-10 Score=95.71 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=59.1
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhcc--CCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSR--QGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++.|+ +++.||++||++|+.+.|.|.+++.+++. +.++.+..|+++... .+++
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~------------------------~~~~ 190 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP------------------------DIAD 190 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH------------------------HHHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH------------------------HHHH
Confidence 46788 89999999999999999999999999842 125888888877553 6788
Q ss_pred hcCCCCcceEEEECCCCeEEe
Q 018808 112 LFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~ 132 (350)
.|++.++|++++ +|++++
T Consensus 191 ~~~V~~vPt~~i---~G~~~~ 208 (243)
T 2hls_A 191 KYGVMSVPSIAI---NGYLVF 208 (243)
T ss_dssp HTTCCSSSEEEE---TTEEEE
T ss_pred HcCCeeeCeEEE---CCEEEE
Confidence 899999999988 788764
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-10 Score=99.98 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ +||+||++||++|+.+.|.|.+++++|+ .+.|+.|+++. . .++..|++
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~---~v~f~kVd~d~-~------------------------~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASN-T------------------------GAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT---TSEEEEEEHHH-H------------------------CCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CCEEEEEeCCc-H------------------------HHHHHCCC
Confidence 477 9999999999999999999999999986 38888887643 1 35667999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 184 ~~~PTll~~-~~G~~v~~ 200 (245)
T 1a0r_P 184 DVLPTLLVY-KGGELLSN 200 (245)
T ss_dssp TTCSEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 59998764
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-11 Score=89.77 Aligned_cols=81 Identities=27% Similarity=0.591 Sum_probs=63.2
Q ss_pred cCCceeecCC-CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 26 SNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 26 ~~g~~~~l~~-~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.+++.+.... -.++ ++|.||++||++|+.+.|.+.++.++++. ++.++.++++...
T Consensus 6 l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~-------------------- 63 (106)
T 2yj7_A 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENP-------------------- 63 (106)
Confidence 3444443222 2467 99999999999999999999999998865 4778888776443
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++.|++.++|+++++ ++|+++.+
T Consensus 64 ----~~~~~~~v~~~Pt~~~~-~~g~~~~~ 88 (106)
T 2yj7_A 64 ----NTAAQYGIRSIPTLLLF-KNGQVVDR 88 (106)
Confidence 68888999999999999 88987653
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=90.33 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=50.4
Q ss_pred CCc-EEEEEecCC--ChhhhhhhHHHHHHHHHhccCCCEE--EEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFE--VIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 37 ~gk-~~v~F~~~~--C~~C~~~~~~l~~l~~~~~~~~~~~--~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
.++ ++|+||++| |++|+.+.|.|.++++++ + ++. ++.|++|.. ..+++
T Consensus 33 ~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~------------------------~~la~ 85 (142)
T 2es7_A 33 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQS------------------------EAIGD 85 (142)
T ss_dssp -CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHH------------------------HHHHH
T ss_pred hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCC------------------------HHHHH
Confidence 344 888999887 999999999999999998 4 466 888876533 37899
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.|+|.++|+++++ ++|+++.+
T Consensus 86 ~~~V~~iPT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 86 RFNVRRFPATLVF-TDGKLRGA 106 (142)
T ss_dssp TTTCCSSSEEEEE-SCC----C
T ss_pred hcCCCcCCeEEEE-eCCEEEEE
Confidence 9999999999999 89998764
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=102.57 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=63.9
Q ss_pred ccCCceeecCC--CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC------CEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 25 RSNGDQVKLDS--LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 25 ~~~g~~~~l~~--~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~------~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
.++++.+...- -.++ ++|+||++||++|+.+.|.+.+++++++++. ++.++.|+++...
T Consensus 27 ~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~------------ 94 (470)
T 3qcp_A 27 DLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV------------ 94 (470)
T ss_dssp ECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH------------
T ss_pred ECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH------------
Confidence 44555554222 2337 9999999999999999999999999997432 4899999988664
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCC
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENG 128 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G 128 (350)
.+++.|+|.++|+++++++.|
T Consensus 95 ------------~la~~y~V~~~PTlilf~~gg 115 (470)
T 3qcp_A 95 ------------DLCRKYDINFVPRLFFFYPRD 115 (470)
T ss_dssp ------------HHHHHTTCCSSCEEEEEEESS
T ss_pred ------------HHHHHcCCCccCeEEEEECCC
Confidence 689999999999999997555
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-11 Score=92.25 Aligned_cols=70 Identities=29% Similarity=0.606 Sum_probs=59.5
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
..++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++... .+++.|+
T Consensus 34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~------------------------~~~~~~~ 86 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELK------------------------EVAEKYN 86 (130)
T ss_dssp TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSG------------------------GGHHHHT
T ss_pred hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchH------------------------HHHHHcC
Confidence 4688 9999999999999999999999999985 3778888776543 5788899
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+++.+
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 9999998888 78887654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.5e-11 Score=89.69 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=51.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++|+||++||++|+.+.+.+...++.......+.++.|+++.+.. ..++..|++.++|
T Consensus 21 ~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~----------------------~~la~~~~V~g~P 78 (116)
T 3dml_A 21 RLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP----------------------PGLELARPVTFTP 78 (116)
T ss_dssp EEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC----------------------TTCBCSSCCCSSS
T ss_pred EEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc----------------------hhHHHHCCCCCCC
Confidence 999999999999999987665443321100025678888776521 1466779999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
|+++++ +|+.+.+
T Consensus 79 T~i~f~-~G~ev~R 91 (116)
T 3dml_A 79 TFVLMA-GDVESGR 91 (116)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEEE-CCEEEee
Confidence 999997 9998874
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=97.59 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccChhhH------HHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFT------PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
.+++++|.|||+||++|...- |.+.++.+.+++.+ +.++.|+++.. .++
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~--v~~~~Vd~~~~-----------------------~~l 83 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD-----------------------AAV 83 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEETTTT-----------------------HHH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC--ceEEEEeCccc-----------------------HHH
Confidence 368999999999999973322 57888888887655 99999998854 568
Q ss_pred HHHcCCCCccEEEEECCCCCEEeccch
Q 018808 270 ARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+++|+|.++||++++ ++|+++ .+.|
T Consensus 84 ~~~~~V~~~PTl~~f-~~G~~~-~y~G 108 (367)
T 3us3_A 84 AKKLGLTEEDSIYVF-KEDEVI-EYDG 108 (367)
T ss_dssp HHHHTCCSTTEEEEE-ETTEEE-ECCS
T ss_pred HHHcCCCcCceEEEE-ECCcEE-EeCC
Confidence 999999999999999 678875 4444
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=98.80 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=58.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++.++.||++|||+|+.+.|.++++..++. . +.+..|+.+.. .+++++|+
T Consensus 115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~--v~~~~vd~~~~-----------------------~~~~~~~~ 167 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--R--IKHTAIDGGTF-----------------------QNEITERN 167 (521)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--T--EEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--c--eEEEEEechhh-----------------------HHHHHHhC
Confidence 346788999999999999999999999988765 2 88888887744 56899999
Q ss_pred CCCccEEEEECCCCCEEec
Q 018808 275 LSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~ 293 (350)
+.++|++++ +|+.+..
T Consensus 168 i~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 168 VMGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp CCSSSEEEE---TTEEEEE
T ss_pred CCccCEEEE---CCEEEec
Confidence 999999977 8888755
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-10 Score=96.39 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=58.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|+||++||++|+.+.|.|.+++++++ ++.|+.|+++ . ..++..|++
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~---~v~f~~vd~~-~------------------------~~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS-N------------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHH-H------------------------HTCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEEECC-c------------------------HHHHHHCCC
Confidence 458 9999999999999999999999999885 4889999875 2 146678999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 171 ~~~PTl~~~-~~G~~v~~ 187 (217)
T 2trc_P 171 DVLPTLLVY-KGGELISN 187 (217)
T ss_dssp GGCSEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 69988764
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-08 Score=83.94 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=61.0
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC----CCH---------------HHHHHh
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD----DEE---------------ESFKRD 250 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d----~~~---------------~~~~~~ 250 (350)
+.+....+|++|+.||++|||+|+.+.+.|.++.+. + +.++.+.+. .+. ..+.++
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~--v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~ 152 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 152 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----C--cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHH
Confidence 344445688999999999999999999999887542 3 777766542 111 123333
Q ss_pred hcCCCC--ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 251 LGSMPW--LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 251 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
+..... ..+....+...+++++|||.++|++++. +|+.+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~~ 193 (216)
T 1eej_A 153 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTLV 193 (216)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeEe
Confidence 322211 0123345566789999999999998553 56543
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-09 Score=75.72 Aligned_cols=64 Identities=19% Similarity=0.343 Sum_probs=46.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.||++|||+|+.+.+.|.++.+++. +.+..+.+|.+. ...++.++||+.++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~~v~~~~--------------------~~~~~~~~~gv~~vPt 58 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSK-----YTVEIVHLGTDK--------------------ARIAEAEKAGVKSVPA 58 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTT-----EEEEEEETTTCS--------------------STHHHHHHHTCCEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcC-----CeEEEEEecCCh--------------------hhHHHHHHcCCCcCCE
Confidence 567999999999999999988765543 444444444210 1145678899999999
Q ss_pred EEEECCCCCEEe
Q 018808 281 LVIIGPDGKTLH 292 (350)
Q Consensus 281 ~~lid~~G~i~~ 292 (350)
+++ +|+++.
T Consensus 59 ~~i---~g~~~~ 67 (80)
T 2k8s_A 59 LVI---DGAAFH 67 (80)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEE
Confidence 877 788765
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-08 Score=80.69 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=38.6
Q ss_pred ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 188 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 188 ~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
....+....+|++|+.||..|||+|+.+.|.|.++.+++++ +.++.+.+
T Consensus 13 ~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~~ 61 (175)
T 3gyk_A 13 NAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYREW 61 (175)
T ss_dssp TSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEEC
T ss_pred CCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEeC
Confidence 34455666789999999999999999999999999887653 55555443
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=80.07 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=57.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+++||++ |++|+.+.|.|.+++++++++ +.++.|+.|.. .++++.||+.
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~-----------------------~~~a~~~gi~ 75 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAF-----------------------GAHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT-----------------------GGGTTTTTCC
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHh-----------------------HHHHHHcCCC
Confidence 46899999999 899999999999999999866 88999988744 3367899999
Q ss_pred C--ccEEEEECC-CCCE
Q 018808 277 T--LPTLVIIGP-DGKT 290 (350)
Q Consensus 277 ~--~P~~~lid~-~G~i 290 (350)
+ +|++++++. +|+.
T Consensus 76 ~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 76 TDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp SSSSSEEEEECTTTCCB
T ss_pred cccCCEEEEEecCcCcc
Confidence 9 999999964 5766
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.78 E-value=9e-09 Score=76.77 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=52.4
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.+|+.||++||++|....+.|.++.+++. +.+..|++|++ .+++.+||+. +
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-----i~~~~vDId~d-----------------------~~l~~~ygv~-V 80 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-----FELEVINIDGN-----------------------EHLTRLYNDR-V 80 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-----CCCEEEETTTC-----------------------HHHHHHSTTS-C
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-----CeEEEEECCCC-----------------------HHHHHHhCCC-C
Confidence 56889999999999999999999987763 66777777754 3477889997 9
Q ss_pred cEEEEECCCCCEEe
Q 018808 279 PTLVIIGPDGKTLH 292 (350)
Q Consensus 279 P~~~lid~~G~i~~ 292 (350)
|+++++ .+|+++.
T Consensus 81 P~l~~~-~dG~~v~ 93 (107)
T 2fgx_A 81 PVLFAV-NEDKELC 93 (107)
T ss_dssp SEEEET-TTTEEEE
T ss_pred ceEEEE-ECCEEEE
Confidence 999888 6788773
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-08 Score=85.65 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCCEEEEEE----eccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 196 EGKTIGLYF----SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 196 ~gk~vlv~f----~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
.+.+++++| |++||++|+.++|.+.++++++.+. +++.++.|+++.. .++++
T Consensus 20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~-----------------------~~l~~ 75 (229)
T 2ywm_A 20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ-DKIKLDIYSPFTH-----------------------KEETE 75 (229)
T ss_dssp CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT-TTEEEEEECTTTC-----------------------HHHHH
T ss_pred cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC-CceEEEEecCccc-----------------------HHHHH
Confidence 445666666 6899999999999999998888532 2399999987754 56899
Q ss_pred HcCCCCccEEEEECCCCCEEeccch
Q 018808 272 YFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+|+|.++||+++++ +|+...++.|
T Consensus 76 ~~~v~~~Ptl~~~~-~~~~~~~~~G 99 (229)
T 2ywm_A 76 KYGVDRVPTIVIEG-DKDYGIRYIG 99 (229)
T ss_dssp HTTCCBSSEEEEES-SSCCCEEEES
T ss_pred HcCCCcCcEEEEEC-CCcccceecC
Confidence 99999999999995 5655555555
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=76.49 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=48.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++.+++ ||++|||+|+.+.|.|.++. .. +.++.|+.+....+ ...++.+.|++.
T Consensus 19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~----~~---~~~v~v~~~~~~~~------------------~~~~l~~~~~v~ 72 (116)
T 2e7p_A 19 SAPVVV-FSKTYCGYCNRVKQLLTQVG----AS---YKVVELDELSDGSQ------------------LQSALAHWTGRG 72 (116)
T ss_dssp SSSEEE-EECTTCHHHHHHHHHHHHHT----CC---CEEEEGGGSTTHHH------------------HHHHHHHHHSCC
T ss_pred CCCEEE-EECCCChhHHHHHHHHHHcC----CC---eEEEEccCCCChHH------------------HHHHHHHHhCCC
Confidence 345555 99999999999999887763 22 55555544432111 124688899999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++ ++ +|+++....+
T Consensus 73 ~~Pt~-~~--~g~~v~~~~~ 89 (116)
T 2e7p_A 73 TVPNV-FI--GGKQIGGCDT 89 (116)
T ss_dssp SSCEE-EE--TTEEEECHHH
T ss_pred CcCEE-EE--CCEEECChHH
Confidence 99999 44 6888876655
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=72.66 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=44.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.||++||++|+...|.|.++..++ +..|++|++ .+++++||+. +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~-----------------------~~l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDD-----------------------AALESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTC-----------------------HHHHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCC-----------------------HHHHHHhCCC-cCe
Confidence 67899999999999999886653221 455676654 4478889998 999
Q ss_pred EEEECCCCCEEe
Q 018808 281 LVIIGPDGKTLH 292 (350)
Q Consensus 281 ~~lid~~G~i~~ 292 (350)
+++ .+|+.+.
T Consensus 51 l~~--~~G~~v~ 60 (87)
T 1ttz_A 51 LRD--PMGRELD 60 (87)
T ss_dssp EEC--TTCCEEE
T ss_pred EEE--ECCEEEe
Confidence 888 7798874
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-06 Score=80.16 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=84.4
Q ss_pred HHHhhcCCCCcceEEEECC--CCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecC
Q 018808 108 KLDELFKVMGIPHLVILDE--NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISS 185 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~--~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~ 185 (350)
.+++.|++.. |.++++-+ ++.+.+.+ +.+...+..++.... .|.+ ...
T Consensus 73 ~v~~~~~v~~-~~i~lfk~f~~~~~~~~g-------------~~~~~~i~~fi~~~~---------------~p~v-~~~ 122 (361)
T 3uem_A 73 DVFSKYQLDK-DGVVLFKKFDEGRNNFEG-------------EVTKENLLDFIKHNQ---------------LPLV-IEF 122 (361)
T ss_dssp HHHHHTTCSS-SEEEEEESSTTSEEECCS-------------CCCHHHHHHHHHHHS---------------SCSE-EEC
T ss_pred HHHHHhCCCC-CeEEEEEecCCCccccCC-------------cCCHHHHHHHHHHcC---------------CCcc-eec
Confidence 6888899987 88888854 45555421 245566655554311 1111 111
Q ss_pred CCcee-eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCch
Q 018808 186 DGRKI-SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDK 264 (350)
Q Consensus 186 ~g~~v-~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (350)
+.... ..-....+.+++.|+++||++|..+.+.+.+++++++++ +.++.|+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~--------------------- 178 (361)
T 3uem_A 123 TEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHT--------------------- 178 (361)
T ss_dssp STTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSG---------------------
T ss_pred CcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChH---------------------
Confidence 11111 111112357899999999999999999999999999876 88888877621
Q ss_pred hHHHHHHHcCCCC--ccEEEEECCCC
Q 018808 265 SREKLARYFELST--LPTLVIIGPDG 288 (350)
Q Consensus 265 ~~~~~~~~~~v~~--~P~~~lid~~G 288 (350)
....+++.||+.+ +|++++++..+
T Consensus 179 ~~~~~~~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 179 DNQRILEFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp GGHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred HHHHHHHHcCCCccCCccEEEEEcCC
Confidence 1256889999988 99999997644
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.2e-08 Score=82.62 Aligned_cols=70 Identities=9% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCCEEEEEEe--ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 196 EGKTIGLYFS--MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 196 ~gk~vlv~f~--~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+++|||.|| |+||+ +.|.+.++++++.+...++.|+.|++|+.. .....+++++|
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g------------------~~~n~~la~~~ 89 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYG------------------ELENKALGDRY 89 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSST------------------TCTTHHHHHHT
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccc------------------ccccHHHHHHh
Confidence 4579999999 99998 899999999999651123999999987500 00015689999
Q ss_pred CCC--CccEEEEECCCCC
Q 018808 274 ELS--TLPTLVIIGPDGK 289 (350)
Q Consensus 274 ~v~--~~P~~~lid~~G~ 289 (350)
+|. ++||++++ + |+
T Consensus 90 ~V~~~~~PTl~~F-~-G~ 105 (248)
T 2c0g_A 90 KVDDKNFPSIFLF-K-GN 105 (248)
T ss_dssp TCCTTSCCEEEEE-S-SS
T ss_pred CCCcCCCCeEEEE-e-CC
Confidence 999 99999999 5 87
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=79.17 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
.++++|+.||..|||+|+.+.|.+.++.+++.++ +.+..++++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEecc
Confidence 5789999999999999999999999999888763 888888886
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-08 Score=77.74 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=53.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
.+| ++|+|+++||..|+.+.... .++.+.+++ ++.++.++.++. ....+.+.
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~----------------------~~~~l~~~ 96 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSE----------------------EGQRYIQF 96 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSH----------------------HHHHHHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCH----------------------hHHHHHHH
Confidence 578 99999999999999886543 344444433 377777766432 12368889
Q ss_pred cCCCCcceEEEECCC-CeEEe
Q 018808 113 FKVMGIPHLVILDEN-GKVLS 132 (350)
Q Consensus 113 ~~v~~~P~~~lid~~-G~v~~ 132 (350)
|++.++|+++++|++ |+.+.
T Consensus 97 y~v~~~P~~~fld~~~G~~l~ 117 (153)
T 2dlx_A 97 YKLGDFPYVSILDPRTGQKLV 117 (153)
T ss_dssp HTCCSSSEEEEECTTTCCCCE
T ss_pred cCCCCCCEEEEEeCCCCcEee
Confidence 999999999999998 76543
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.1e-08 Score=72.66 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=52.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++.||++||++|....+.|.++.+++. +.+..|+++.+. .++..|+++ +|
T Consensus 31 ~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~------------------------~l~~~ygv~-VP 81 (107)
T 2fgx_A 31 KLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNE------------------------HLTRLYNDR-VP 81 (107)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCH------------------------HHHHHSTTS-CS
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCH------------------------HHHHHhCCC-Cc
Confidence 7999999999999999999999988763 678888888765 467789987 99
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
+++++ .+|+.+.
T Consensus 82 ~l~~~-~dG~~v~ 93 (107)
T 2fgx_A 82 VLFAV-NEDKELC 93 (107)
T ss_dssp EEEET-TTTEEEE
T ss_pred eEEEE-ECCEEEE
Confidence 99877 6788764
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-08 Score=70.15 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=46.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++.||++|||+|+.+.+.|.++.+++ .+.+..+.++.+.+ ...+.+.||++++|
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~----~~~~~~~~v~~~~~---------------------~~~~~~~~gv~~vP 57 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDPS----KYTVEIVHLGTDKA---------------------RIAEAEKAGVKSVP 57 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCTT----TEEEEEEETTTCSS---------------------THHHHHHHTCCEEE
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHhc----CCeEEEEEecCChh---------------------hHHHHHHcCCCcCC
Confidence 367799999999999999988776554 25555556553210 12567889999999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
++++ +|+++.
T Consensus 58 t~~i---~g~~~~ 67 (80)
T 2k8s_A 58 ALVI---DGAAFH 67 (80)
T ss_dssp EEEE---TTEEEE
T ss_pred EEEE---CCEEEE
Confidence 9887 787654
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=77.47 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=37.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
.++++|+.||..|||+|..+.|.|.++.+++.++ +.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence 5789999999999999999999999998888763 888777764
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-07 Score=76.32 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=37.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
.++++|+.||..|||+|..+.+.|.++.++++.+ +.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSD---AYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCc---eEEEEeccc
Confidence 4789999999999999999999999999888653 888877763
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-07 Score=75.36 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=40.5
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
++....+....++ +++.||.+|||+|..+.|.|.++.+++++ +.++...+
T Consensus 11 ~~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---v~~~~~~~ 61 (175)
T 3gyk_A 11 DPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN---VRLVYREW 61 (175)
T ss_dssp CTTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---EEEEEEEC
T ss_pred CCCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC---EEEEEEeC
Confidence 4556677778899 99999999999999999999999888653 55655543
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.8e-08 Score=69.07 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=45.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.||++||++|+...|.|.++...+ +..|+++.++ .++..|+++ +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~------------------------~l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDA------------------------ALESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCH------------------------HHHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCH------------------------HHHHHhCCC-cCe
Confidence 78899999999999999887653321 5667887665 577789998 999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ .+|+.+.
T Consensus 51 l~~--~~G~~v~ 60 (87)
T 1ttz_A 51 LRD--PMGRELD 60 (87)
T ss_dssp EEC--TTCCEEE
T ss_pred EEE--ECCEEEe
Confidence 888 6787763
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=74.48 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=58.4
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC--C-CH----------------HHHHhHH
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--E-DD----------------EAFKGYF 90 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d--~-~~----------------~~~~~~~ 90 (350)
+.+....|+ +++.||.+|||+|+.+.|.|.++.+. ++.++.+... . .. ..+.++.
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~ 153 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVM 153 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHH
Confidence 444455678 99999999999999999999887652 3666666432 1 11 1122222
Q ss_pred hcCCCcc-cccCChhhHHHHHhhcCCCCcceEEEECCCCeE
Q 018808 91 SKMPWLA-VPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 91 ~~~~~~~-~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
...+... ......+.+..+++.||++++|++++ .+|..
T Consensus 154 ~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~--~dG~~ 192 (216)
T 1eej_A 154 AGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTL 192 (216)
T ss_dssp TTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCE
T ss_pred hCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEE--cCCeE
Confidence 2222110 01123456678999999999999965 35643
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=81.66 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=93.8
Q ss_pred hcCccCCceeccCCceeecCCCCCc-EEEEEe--cCCChhhhhhhHHHHHHHHHhcc-CCCEEEEEEECCCCHHHHHhHH
Q 018808 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFS--ASWCGPCQRFTPILAEVYNELSR-QGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 15 ~g~~~p~f~~~~~g~~~~l~~~~gk-~~v~F~--~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.|...+.....++..++.----.++ ++|+|| ++||+ +.|.|.++.+.++. ..++.|+.|+++...+
T Consensus 10 ~~~~~~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~------ 79 (248)
T 2c0g_A 10 HGSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE------ 79 (248)
T ss_dssp -----CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT------
T ss_pred CCCCCCCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc------
Confidence 3555666666666665544112456 999999 99998 99999999999965 3369999999876100
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC--CcceEEEECCCCeE---EecCCccceecccCcCCCCChHHHHHHHHHHHHHH
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM--GIPHLVILDENGKV---LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAK 165 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~v---~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~ 165 (350)
..+..++..|+|. ++||++++ + |+. ... +..| ..+...+..++....
T Consensus 80 -------------~~n~~la~~~~V~~~~~PTl~~F-~-G~~~~~~~y------~~~G----~~~~~~L~~fi~~~~--- 131 (248)
T 2c0g_A 80 -------------LENKALGDRYKVDDKNFPSIFLF-K-GNADEYVQL------PSHV----DVTLDNLKAFVSANT--- 131 (248)
T ss_dssp -------------CTTHHHHHHTTCCTTSCCEEEEE-S-SSSSSEEEC------CTTS----CCCHHHHHHHHHHHS---
T ss_pred -------------cccHHHHHHhCCCcCCCCeEEEE-e-CCcCcceee------cccC----CCCHHHHHHHHHHhh---
Confidence 0013799999999 99999999 4 762 211 0011 235555555554311
Q ss_pred HhhchhhhcccccCCceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHH
Q 018808 166 REQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKL 226 (350)
Q Consensus 166 ~~~~~~~~~~~~~p~f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~ 226 (350)
+.. ....|..-.++.+ +..|.+.||..|...+..+++...++
T Consensus 132 ---------~~~-----~~~~g~i~~~d~l-----~~~f~~~~~~~~~~~~~~~~~~~~~l 173 (248)
T 2c0g_A 132 ---------PLY-----IGRDGCIKEFNEV-----LKNYANIPDAEQLKLIEKLQAKQEQL 173 (248)
T ss_dssp ---------SCC-----CCCTTCCHHHHHH-----HTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred ---------ccc-----cCCCCchHHHHHH-----HHHHhcccchhHHHHHHHHHHHHHHc
Confidence 100 0122222122222 12388889998988888888877766
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=71.67 Aligned_cols=67 Identities=21% Similarity=0.465 Sum_probs=46.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ +++ ||++||++|+.+.|.|.++.. .+.++.|+.+.... +....+++.|++
T Consensus 18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~------~~~~v~v~~~~~~~-------------------~~~~~l~~~~~v 71 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGA------SYKVVELDELSDGS-------------------QLQSALAHWTGR 71 (116)
T ss_dssp TSSSEEE-EECTTCHHHHHHHHHHHHHTC------CCEEEEGGGSTTHH-------------------HHHHHHHHHHSC
T ss_pred cCCCEEE-EECCCChhHHHHHHHHHHcCC------CeEEEEccCCCChH-------------------HHHHHHHHHhCC
Confidence 455 666 999999999999998877633 24455554443321 112368889999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|++ ++ +|+++.
T Consensus 72 ~~~Pt~-~~--~g~~v~ 85 (116)
T 2e7p_A 72 GTVPNV-FI--GGKQIG 85 (116)
T ss_dssp CSSCEE-EE--TTEEEE
T ss_pred CCcCEE-EE--CCEEEC
Confidence 999999 44 688775
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.5e-07 Score=74.20 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d 80 (350)
..++ +++.||.+|||+|+.+.|.+.++.+++++ ++.+..++++
T Consensus 23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~ 66 (195)
T 3hd5_A 23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA 66 (195)
T ss_dssp STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence 3578 99999999999999999999999999876 4888888775
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-07 Score=78.07 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=55.3
Q ss_pred CCCEEEEEEec--cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 196 EGKTIGLYFSM--SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 196 ~gk~vlv~f~~--~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+++|||.||+ +||+ +.|.+.++++.+.+. .++.|+.|++|+.- .+...+++++|
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g------------------~~~~~~l~~~~ 77 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYG------------------DKLNMELSEKY 77 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSS------------------SCCSHHHHHHT
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCccc------------------chhhHHHHHHc
Confidence 35799999999 9998 899999999999752 24999999876300 00115689999
Q ss_pred CCC--CccEEEEECCCCC
Q 018808 274 ELS--TLPTLVIIGPDGK 289 (350)
Q Consensus 274 ~v~--~~P~~~lid~~G~ 289 (350)
+|. ++||++++ ++|+
T Consensus 78 ~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 78 KLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp TCCGGGCSEEEEE-ETTC
T ss_pred CCCCCCCCEEEEE-eCCC
Confidence 999 99999999 7787
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-07 Score=79.34 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=61.2
Q ss_pred eeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC----CC------------HHHHHHhhc
Q 018808 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD----DE------------EESFKRDLG 252 (350)
Q Consensus 189 ~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d----~~------------~~~~~~~~~ 252 (350)
.+.+..-.+|++|+.|+.+|||+|+++.+.+.++.++ + ++.+..+.+. .+ +..+..+..
T Consensus 89 ~i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g---~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~ 163 (241)
T 1v58_A 89 WLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS--G---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE 163 (241)
T ss_dssp CEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHH
T ss_pred CceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC--C---cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHH
Confidence 3444445678999999999999999999998887654 1 2766665552 11 111111111
Q ss_pred -CCC--Ccc--------ccCCchhHHHHHHHcCCCCccEEEEECCCCCE
Q 018808 253 -SMP--WLA--------LPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290 (350)
Q Consensus 253 -~~~--~~~--------~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i 290 (350)
.+. .+. .....+...++.+++||.++|++++.|.+|++
T Consensus 164 ~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 164 ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp HTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 110 000 00112344678899999999999999888975
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-07 Score=76.95 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC----CCH---------------HHHHHhhcCCCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD----DEE---------------ESFKRDLGSMPW 256 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d----~~~---------------~~~~~~~~~~~~ 256 (350)
.+|++|+.||.+|||+|+.+.+.|.++.+ .+ +.+..+.+. .+. ..+..++.....
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 56899999999999999999999988543 23 666554332 111 112222211110
Q ss_pred --ccccCCchhHHHHHHHcCCCCccEEEEECCCCC
Q 018808 257 --LALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289 (350)
Q Consensus 257 --~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~ 289 (350)
-......+...++++.+||.++|++++ .+|+
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 011222345678899999999999887 5676
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=67.18 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=48.7
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--CCCc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE--LSTL 278 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~ 278 (350)
++.|+++|||+|+...+.|.++..+++ + +.+..|+++.+.. ...++.+.+| +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD--D--FQYQYVDIRAEGI-------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS--S--CEEEEECHHHHTC-------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC--C--ceEEEEecccChH-------------------HHHHHHHHhCCCCcee
Confidence 677999999999999999999887764 3 7777776642110 0145788898 8999
Q ss_pred cEEEEECCCCCEEe
Q 018808 279 PTLVIIGPDGKTLH 292 (350)
Q Consensus 279 P~~~lid~~G~i~~ 292 (350)
|+++ + +|+.+.
T Consensus 60 P~i~-~--~g~~i~ 70 (85)
T 1ego_A 60 PQIF-V--DQQHIG 70 (85)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CeEE-E--CCEEEE
Confidence 9984 4 577653
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=72.16 Aligned_cols=66 Identities=8% Similarity=0.107 Sum_probs=55.6
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
+. ++|+||++ |++|+.+.|.|.+++++|+. ++.|+.++.|... .++..||++
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g--k~~f~~vd~d~~~------------------------~~a~~~gi~ 75 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFG------------------------AHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTG------------------------GGTTTTTCC
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC--eEEEEEEchHHhH------------------------HHHHHcCCC
Confidence 45 99999999 88999999999999999865 4889999877554 578889999
Q ss_pred C--cceEEEECC-CCeE
Q 018808 117 G--IPHLVILDE-NGKV 130 (350)
Q Consensus 117 ~--~P~~~lid~-~G~v 130 (350)
+ +|++++++. +|+.
T Consensus 76 ~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 76 TDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp SSSSSEEEEECTTTCCB
T ss_pred cccCCEEEEEecCcCcc
Confidence 9 999999964 4654
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=78.75 Aligned_cols=44 Identities=18% Similarity=0.087 Sum_probs=37.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDD 242 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~ 242 (350)
.++++||.||+.|||+|+.+.|.| .++.++++++ +.+..+.++.
T Consensus 112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSS
T ss_pred CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCc
Confidence 468999999999999999999988 8888887653 7888888864
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.7e-07 Score=63.99 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=49.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC--CCCc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK--VMGI 118 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 118 (350)
++.|+++|||+|+...+.|.++.++++ .+.+..++++.+.+ ....+.+.++ +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~--------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGI--------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTC--------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChH--------------------HHHHHHHHhCCCCcee
Confidence 678999999999999999999888764 37787777643210 0126788888 8999
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
|++++ +|+.+.
T Consensus 60 P~i~~---~g~~i~ 70 (85)
T 1ego_A 60 PQIFV---DQQHIG 70 (85)
T ss_dssp CEEEE---TTEEEE
T ss_pred CeEEE---CCEEEE
Confidence 99854 577664
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-08 Score=86.53 Aligned_cols=62 Identities=10% Similarity=0.199 Sum_probs=43.2
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc-hhHHHHHHHcCCCC
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYFELST 277 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~ 277 (350)
..++.|||+|||+|+++.|.++++.+++ . .|.+|.. .. +...+++++|++++
T Consensus 199 ~~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~------------------d~~~~~~~la~~~gI~~ 251 (291)
T 3kp9_A 199 IGGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPN------------------GPGTPQAQECTEAGITS 251 (291)
T ss_dssp TTCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSS------------------CSSSCCCHHHHTTTCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeec------------------CchhhHHHHHHHcCCcc
Confidence 3468999999999999999998876443 2 2333310 00 11256899999999
Q ss_pred ccEEEEECCCCCE
Q 018808 278 LPTLVIIGPDGKT 290 (350)
Q Consensus 278 ~P~~~lid~~G~i 290 (350)
+||+++ +|+.
T Consensus 252 vPT~~i---~G~~ 261 (291)
T 3kp9_A 252 YPTWII---NGRT 261 (291)
T ss_dssp TTEEEE---TTEE
T ss_pred cCeEEE---CCEE
Confidence 999655 6763
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=74.86 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=54.3
Q ss_pred CCc-EEEEEec--CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC--CHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 37 KGK-IGLYFSA--SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--DDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 37 ~gk-~~v~F~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
.++ ++|.||+ +||+ +.|.|.++.+.+....++.|+.|++++ .. .+..++.
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~---------------------~~~~l~~ 75 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDK---------------------LNMELSE 75 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSC---------------------CSHHHHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccch---------------------hhHHHHH
Confidence 346 9999999 9999 899999999999754469999998764 11 1137999
Q ss_pred hcCCC--CcceEEEECCCCe
Q 018808 112 LFKVM--GIPHLVILDENGK 129 (350)
Q Consensus 112 ~~~v~--~~P~~~lid~~G~ 129 (350)
.|+|. ++||++++ ++|+
T Consensus 76 ~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 76 KYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp HTTCCGGGCSEEEEE-ETTC
T ss_pred HcCCCCCCCCEEEEE-eCCC
Confidence 99999 99999999 6665
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-06 Score=70.06 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=36.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.++++|+.||..|||+|..+.+.|.++.+++..+ +.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKD---VRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---EEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCc---eEEEEeCc
Confidence 5788999999999999999999999998887643 88877776
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=71.10 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=36.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d 80 (350)
.++ +++.||..|||+|..+.|.|.++.+++.+ ++.+..+++.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehh
Confidence 678 99999999999999999999999999876 4777776653
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=83.63 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=57.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ .++.||++||++|+.+.|.|.++...++ ++.+..++.+..+ +++..|++
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~---~v~~~~vd~~~~~------------------------~~~~~~~i 168 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQ------------------------NEITERNV 168 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC---ceEEEEEechhhH------------------------HHHHHhCC
Confidence 456 8999999999999999999999988764 4888888877654 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|++++ +|+.+..
T Consensus 169 ~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 169 MGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp CSSSEEEE---TTEEEEE
T ss_pred CccCEEEE---CCEEEec
Confidence 99999987 7887764
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=63.83 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
.+++++.|+++|||+|+...+.|.++. .+ +.+..|++|+.. ..++.++|| .
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~-----~~--i~~~~vdi~~~~---------------------~~el~~~~g-~ 65 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYK-----DR--FILQEVDITLPE---------------------NSTWYERYK-F 65 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTS-----SS--SEEEEEETTSST---------------------THHHHHHSS-S
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhh-----hC--CeEEEEECCCcc---------------------hHHHHHHHC-C
Confidence 456788899999999999988876542 22 677777776211 156788999 9
Q ss_pred CccEEEEECCCCCEE
Q 018808 277 TLPTLVIIGPDGKTL 291 (350)
Q Consensus 277 ~~P~~~lid~~G~i~ 291 (350)
.+|+++ + +|+.+
T Consensus 66 ~vP~l~-~--~g~~~ 77 (100)
T 1wjk_A 66 DIPVFH-L--NGQFL 77 (100)
T ss_dssp SCSEEE-E--SSSEE
T ss_pred CCCEEE-E--CCEEE
Confidence 999764 4 56664
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.27 E-value=7.2e-06 Score=66.87 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=40.6
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
+.+....++++|+.|+..+||+|..+.+.+.++.+++.+.+ ++.++...+.
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCC
Confidence 45555678999999999999999999999999988883322 3888877664
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.4e-06 Score=70.61 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=60.5
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC---CCHHH-------------HHhHHh-
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---EDDEA-------------FKGYFS- 91 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d---~~~~~-------------~~~~~~- 91 (350)
.+.+..-.++ +++.|+.+|||+|+++.+.+.++.+. +++.+..+.+. ..... +-.+..
T Consensus 89 ~i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 89 WLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp CEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred CceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 4445555677 99999999999999999998876664 24777666542 22111 111111
Q ss_pred cCC---Ccccc------cCChhhHHHHHhhcCCCCcceEEEECCCCeE
Q 018808 92 KMP---WLAVP------FSDSETRDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 92 ~~~---~~~~~------~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
.+. ..... ....+.+..+++.+|++++|++++.|.+|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 110 00000 0012345578899999999999999878874
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.7e-06 Score=69.23 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=35.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
.++ +++.||..|||+|..+.+.|.++.++++. ++.+..+.+
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEEC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEecc
Confidence 567 99999999999999999999999999865 477777765
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=5.6e-06 Score=58.16 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=40.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+++|||+|+...+.|.+. + +.+..++++.+++. .+..+++|+.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~~--------------------~~~~~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------C--CCeEEEECCCCHHH--------------------HHHHHHhCCCccCE
Confidence 5679999999999988877652 3 55666777754321 12233589999999
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
++ + +|+.+
T Consensus 54 ~~-~--~g~~~ 61 (81)
T 1h75_A 54 VI-A--GDLSW 61 (81)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 84 4 45543
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-07 Score=78.70 Aligned_cols=73 Identities=18% Similarity=0.384 Sum_probs=50.5
Q ss_pred ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 29 ~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
..+++++..++ .+++||++||++|+++.|.+.++.+++ . .++++.... .+.+.
T Consensus 188 ~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l------~--~Vd~d~~d~------------------~~~~~ 241 (291)
T 3kp9_A 188 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV------P--YVECSPNGP------------------GTPQA 241 (291)
T ss_dssp THHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS------C--EEESCSSCS------------------SSCCC
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc------C--EEEEeecCc------------------hhhHH
Confidence 34555555555 789999999999999999998876554 2 344442110 01124
Q ss_pred HHHhhcCCCCcceEEEECCCCeE
Q 018808 108 KLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~v 130 (350)
+++++|+++++||+++ +|+.
T Consensus 242 ~la~~~gI~~vPT~~i---~G~~ 261 (291)
T 3kp9_A 242 QECTEAGITSYPTWII---NGRT 261 (291)
T ss_dssp HHHHTTTCCSTTEEEE---TTEE
T ss_pred HHHHHcCCcccCeEEE---CCEE
Confidence 7999999999999655 6764
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8.8e-06 Score=67.63 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=37.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
.++++|+.|+..|||+|+.+.|.+.++.+++.++ +.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence 4789999999999999999999999998888763 888888875
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=62.98 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=44.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+++.|+++||++|+...+.|.++.+ ++.+..+++++.. ..++.+.|+ .++|
T Consensus 18 ~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~----------------------~~el~~~~g-~~vP 68 (100)
T 1wjk_A 18 VLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPE----------------------NSTWYERYK-FDIP 68 (100)
T ss_dssp EEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSST----------------------THHHHHHSS-SSCS
T ss_pred EEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcc----------------------hHHHHHHHC-CCCC
Confidence 8889999999999999988865432 3778888887221 126888899 9999
Q ss_pred eEEEECCCCeE
Q 018808 120 HLVILDENGKV 130 (350)
Q Consensus 120 ~~~lid~~G~v 130 (350)
+++ + +|+.
T Consensus 69 ~l~-~--~g~~ 76 (100)
T 1wjk_A 69 VFH-L--NGQF 76 (100)
T ss_dssp EEE-E--SSSE
T ss_pred EEE-E--CCEE
Confidence 764 3 5654
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=63.06 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=41.6
Q ss_pred ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 29 ~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
..+.+....++ +++.|+..+||+|..+.+.+.++.++|.+.++++++...+
T Consensus 18 ~~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 18 TGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CCcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 34666677888 9999999999999999999999999884444578877665
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=67.15 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC--C-CHH----------------HHHhHHhcCCCc
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--E-DDE----------------AFKGYFSKMPWL 96 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d--~-~~~----------------~~~~~~~~~~~~ 96 (350)
.++ +++.||.+|||+|+++.|.|.++.+ .+ +.+..+... . .+. .+..++......
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~ 159 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK 159 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence 466 9999999999999999999988544 22 566554332 1 111 111111111100
Q ss_pred c-cccCChhhHHHHHhhcCCCCcceEEEECCCCe
Q 018808 97 A-VPFSDSETRDKLDELFKVMGIPHLVILDENGK 129 (350)
Q Consensus 97 ~-~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (350)
. -.-...+.+..+++.+|++++|++++ .+|+
T Consensus 160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 160 EVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp SCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred hHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 0 00112345668899999999999998 4675
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.9e-05 Score=64.20 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=35.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
.++ +++.||..+||+|..+.+.+.++.++++. ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCc
Confidence 678 99999999999999999999999988864 477777665
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=62.55 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=102.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++|-|+++|| ....+.+.++++.+. ++.+.... + ..+++.|++.. |
T Consensus 30 ~vVgff~~~~---~~~~~~f~~~A~~l~---~~~F~~t~---~------------------------~~v~~~~~v~~-p 75 (227)
T 4f9z_D 30 AVIGFFQDLE---IPAVPILHSMVQKFP---GVSFGIST---D------------------------SEVLTHYNITG-N 75 (227)
T ss_dssp EEEEECSCSC---STHHHHHHHHTTTCT---TSEEEEEC---C------------------------HHHHHHTTCCS-S
T ss_pred EEEEEecCCC---chhHHHHHHHHHhCC---CceEEEEC---C------------------------HHHHHHcCCCC-C
Confidence 8888999885 567777888887773 35554431 2 26788899987 9
Q ss_pred eEEEECCC--CeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCceee-ccccC
Q 018808 120 HLVILDEN--GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS-VSDLE 196 (350)
Q Consensus 120 ~~~lid~~--G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v~-l~~~~ 196 (350)
+++++.+. +...+. +....+.+...+..++... ..|-+ ...+..... +-.-.
T Consensus 76 ~i~lfk~~~~~~~~~~---------~~~~g~~~~~~l~~fi~~~---------------~~plv-~e~t~~n~~~~~~~~ 130 (227)
T 4f9z_D 76 TICLFRLVDNEQLNLE---------DEDIESIDATKLSRFIEIN---------------SLHMV-TEYNPVTVIGLFNSV 130 (227)
T ss_dssp EEEEEETTTTEEEEEC---------HHHHHTCCHHHHHHHHHHH---------------CCCSE-EECCHHHHHHHHHSS
T ss_pred eEEEEEecCccccccc---------ccccCCCCHHHHHHHHHHh---------------CCCce-eecCcccHHHHhccC
Confidence 99888542 222221 0000013445555444321 11211 111211110 00111
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
-+.+++.|...||+.|....+.+.+++++++++ +.++.+..+... ...+.+.||+.
T Consensus 131 ~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~---i~F~~vd~~~~~---------------------~~~~l~~fgl~ 186 (227)
T 4f9z_D 131 IQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK---ILFILVDSGMKE---------------------NGKVISFFKLK 186 (227)
T ss_dssp CCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT---CEEEEEETTSGG---------------------GHHHHHHTTCC
T ss_pred CceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC---EEEEEeCCccHh---------------------HHHHHHHcCCC
Confidence 245667777889999999999999999999876 888888776311 13467889998
Q ss_pred --CccEEEEECCCCC
Q 018808 277 --TLPTLVIIGPDGK 289 (350)
Q Consensus 277 --~~P~~~lid~~G~ 289 (350)
.+|++.+++..+.
T Consensus 187 ~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 187 ESQLPALAIYQTLDD 201 (227)
T ss_dssp GGGCSEEEEEESSSC
T ss_pred cccCCEEEEEECCCC
Confidence 7999999986554
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=54.46 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=39.7
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+++|||+|+...+.|.++ + +.+..++++.+.+. .+..+.+++..+|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~~--------------------~~~~~~~~~~~vP~ 53 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDEA--------------------RDYVMALGYVQAPV 53 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHH--------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHHH--------------------HHHHHHcCCCccCE
Confidence 5679999999999988887653 3 55566666644321 12225689999999
Q ss_pred EEEECCCCCE
Q 018808 281 LVIIGPDGKT 290 (350)
Q Consensus 281 ~~lid~~G~i 290 (350)
+++ +|+.
T Consensus 54 l~~---~g~~ 60 (75)
T 1r7h_A 54 VEV---DGEH 60 (75)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCeE
Confidence 873 5654
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=60.15 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=42.5
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEE---EEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE---IVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~---vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
.++.|+++|||+|+...+.|.++ + +. +..|++|.+.. ......++.+.+|+.
T Consensus 20 ~vv~f~~~~Cp~C~~~~~~L~~~-------~--~~~~~~~~vdi~~~~~----------------~~~~~~~l~~~~g~~ 74 (114)
T 2hze_A 20 KVTIFVKYTCPFCRNALDILNKF-------S--FKRGAYEIVDIKEFKP----------------ENELRDYFEQITGGK 74 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHTTS-------C--BCTTSEEEEEGGGSSS----------------HHHHHHHHHHHHSCC
T ss_pred CEEEEEeCCChhHHHHHHHHHHc-------C--CCcCceEEEEccCCCC----------------hHHHHHHHHHHhCCC
Confidence 46679999999999888876543 3 33 55555553310 001124678889999
Q ss_pred CccEEEEECCCCCEEe
Q 018808 277 TLPTLVIIGPDGKTLH 292 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~ 292 (350)
++|++++ +|+.+.
T Consensus 75 ~vP~v~i---~g~~ig 87 (114)
T 2hze_A 75 TVPRIFF---GKTSIG 87 (114)
T ss_dssp SSCEEEE---TTEEEE
T ss_pred CcCEEEE---CCEEEe
Confidence 9998754 577764
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=59.86 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=41.7
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+++|||+|+...+.|.++..++. ++.+ ++++.+... .....++.+.+|+.++|+
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~~----~~~~--vdi~~~~~~----------------~~~~~~l~~~~g~~~vP~ 71 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKEG----LLEF--VDITATSDT----------------NEIQDYLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTT----SEEE--EEGGGSTTH----------------HHHHHHHHHHHSCCCSCE
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCCC----ccEE--EEccCCCCH----------------HHHHHHHHHHhCCCCcCe
Confidence 566999999999999888866532221 1444 444432100 001145778899999999
Q ss_pred EEEECCCCCEEe
Q 018808 281 LVIIGPDGKTLH 292 (350)
Q Consensus 281 ~~lid~~G~i~~ 292 (350)
++ + +|+.+.
T Consensus 72 i~-~--~g~~i~ 80 (105)
T 1kte_A 72 VF-I--GKECIG 80 (105)
T ss_dssp EE-E--TTEEEE
T ss_pred EE-E--CCEEEe
Confidence 75 3 577664
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=58.54 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=43.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++.|+++|||+|+...+.|.++...++ ++. .++++.+.+. ......+.+.+++.++|
T Consensus 13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~~--~vdi~~~~~~-----------------~~~~~~l~~~~g~~~vP 70 (105)
T 1kte_A 13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---LLE--FVDITATSDT-----------------NEIQDYLQQLTGARTVP 70 (105)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHSCBCTT---SEE--EEEGGGSTTH-----------------HHHHHHHHHHHSCCCSC
T ss_pred CEEEEEcCCCHhHHHHHHHHHHcCCCCC---ccE--EEEccCCCCH-----------------HHHHHHHHHHhCCCCcC
Confidence 5677999999999999988876433221 144 4455433100 11123677889999999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
++++ +|+.+.
T Consensus 71 ~i~~---~g~~i~ 80 (105)
T 1kte_A 71 RVFI---GKECIG 80 (105)
T ss_dssp EEEE---TTEEEE
T ss_pred eEEE---CCEEEe
Confidence 9754 677664
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=61.04 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=36.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d 80 (350)
.++ +++.||..|||+|..+.|.+.++.+++.+ ++.+..++++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCC
Confidence 478 99999999999999999999999998876 4788877765
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.85 E-value=1.7e-05 Score=59.90 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=45.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEE---EEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFE---VIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~---~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
...+ .++.|+++|||+|+...+.|.++. +. +..++++.+.+. ......+.+
T Consensus 15 ~i~~~~vv~f~~~~Cp~C~~~~~~L~~~~--------~~~~~~~~vdi~~~~~~-----------------~~~~~~l~~ 69 (114)
T 2hze_A 15 RLANNKVTIFVKYTCPFCRNALDILNKFS--------FKRGAYEIVDIKEFKPE-----------------NELRDYFEQ 69 (114)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHHTTSC--------BCTTSEEEEEGGGSSSH-----------------HHHHHHHHH
T ss_pred HhccCCEEEEEeCCChhHHHHHHHHHHcC--------CCcCceEEEEccCCCCh-----------------HHHHHHHHH
Confidence 3344 778899999999999888775431 33 555666544210 112236888
Q ss_pred hcCCCCcceEEEECCCCeEEe
Q 018808 112 LFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.++|++++ +|+.+.
T Consensus 70 ~~g~~~vP~v~i---~g~~ig 87 (114)
T 2hze_A 70 ITGGKTVPRIFF---GKTSIG 87 (114)
T ss_dssp HHSCCSSCEEEE---TTEEEE
T ss_pred HhCCCCcCEEEE---CCEEEe
Confidence 899999998754 677664
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=7.3e-05 Score=52.24 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++|||+|+...+.|.++ .+.+..++++.+.+. ...+ +.+++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~--------------------~~~~-~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEA--------------------AEAL-RAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHH--------------------HHHH-HHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHH--------------------HHHH-HHhCCCccCE
Confidence 6779999999999988887642 256777887765431 1122 2489999999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
++ + +|+.+
T Consensus 54 ~~-~--~g~~~ 61 (81)
T 1h75_A 54 VI-A--GDLSW 61 (81)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 84 3 56544
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.9e-05 Score=59.30 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=41.0
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEE
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 282 (350)
.|+++|||+|+...+.|.++ . +.+..|.+|.+.+. .....++.+.+++..+|+++
T Consensus 31 vf~~~~Cp~C~~~~~~L~~~----~-----i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~l~ 85 (130)
T 2cq9_A 31 IFSKTSCSYCTMAKKLFHDM----N-----VNYKVVELDLLEYG----------------NQFQDALYKMTGERTVPRIF 85 (130)
T ss_dssp EEECSSCSHHHHHHHHHHHH----T-----CCCEEEETTTSTTH----------------HHHHHHHHHHHSSCCSSEEE
T ss_pred EEEcCCChHHHHHHHHHHHc----C-----CCcEEEECcCCcCc----------------HHHHHHHHHHhCCCCcCEEE
Confidence 39999999999998888765 2 33444555532100 00124578889999999985
Q ss_pred EECCCCCEEec
Q 018808 283 IIGPDGKTLHS 293 (350)
Q Consensus 283 lid~~G~i~~~ 293 (350)
+ +|+.+..
T Consensus 86 i---~G~~igg 93 (130)
T 2cq9_A 86 V---NGTFIGG 93 (130)
T ss_dssp E---TTEEEEE
T ss_pred E---CCEEEcC
Confidence 4 6776643
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=57.84 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=56.5
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEE--eCC---C-CH-------------HHHHHh
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI--SLD---D-EE-------------ESFKRD 250 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v--~~d---~-~~-------------~~~~~~ 250 (350)
+.+..-.++++|+.|...+||+|+++.+.|.++ . ++.++.+ .+. . +. ..|...
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~----~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~ 78 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM----T----DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW 78 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC----C----SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc----C----ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence 333344578999999999999999999987654 2 2555554 331 1 11 112221
Q ss_pred hcC--CC--CccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 251 LGS--MP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 251 ~~~--~~--~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
+.. .+ ........+.+.++++++||.++|++++ .+|+++
T Consensus 79 ~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i 121 (147)
T 3gv1_A 79 MRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ 121 (147)
T ss_dssp HHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred HhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence 111 11 0112223455678999999999999998 578753
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.4e-05 Score=57.71 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=42.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++|||+|+...+.|.++. +.+..++++.+.+. .+....+.+.+++..+|+
T Consensus 29 vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~-----------------~~~~~~l~~~~g~~~vP~ 83 (130)
T 2cq9_A 29 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYG-----------------NQFQDALYKMTGERTVPR 83 (130)
T ss_dssp EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTH-----------------HHHHHHHHHHHSSCCSSE
T ss_pred EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCc-----------------HHHHHHHHHHhCCCCcCE
Confidence 44499999999999998887641 33455666544110 112236888899999999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 84 l~i---~G~~ig 92 (130)
T 2cq9_A 84 IFV---NGTFIG 92 (130)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEc
Confidence 854 677664
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.5e-05 Score=60.21 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=40.0
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEE
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 282 (350)
.|+++|||+|+...+.|.++ . +.+..+.+|.+.+. .....++.+.+|+.++|+++
T Consensus 53 vf~~~~Cp~C~~~k~~L~~~----~-----i~~~~vdId~~~~~----------------~~~~~~L~~~~g~~tvP~if 107 (146)
T 2ht9_A 53 IFSKTSCSYCTMAKKLFHDM----N-----VNYKVVELDLLEYG----------------NQFQDALYKMTGERTVPRIF 107 (146)
T ss_dssp EEECTTCHHHHHHHHHHHHH----T-----CCCEEEEGGGCTTH----------------HHHHHHHHHHHSCCCSCEEE
T ss_pred EEECCCChhHHHHHHHHHHc----C-----CCeEEEECccCcCC----------------HHHHHHHHHHhCCCCcCeEE
Confidence 39999999999998888765 2 22334444422000 01124578889999999985
Q ss_pred EECCCCCEEe
Q 018808 283 IIGPDGKTLH 292 (350)
Q Consensus 283 lid~~G~i~~ 292 (350)
+ +|+.+.
T Consensus 108 i---~G~~ig 114 (146)
T 2ht9_A 108 V---NGTFIG 114 (146)
T ss_dssp E---TTEEEE
T ss_pred E---CCEEEe
Confidence 3 677664
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=57.34 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=56.3
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEE--C---CCCHH--------------HHHhHH
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS--G---DEDDE--------------AFKGYF 90 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~--~---d~~~~--------------~~~~~~ 90 (350)
+.+..-.++ +++.|..++||+|+++.+.+.++ ++++++.+. + ..... .|..+.
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~ 79 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM-------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWM 79 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC-------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc-------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHH
Confidence 344445677 99999999999999999987643 246666553 3 22211 122222
Q ss_pred hcCCCcc-c--ccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 91 SKMPWLA-V--PFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 91 ~~~~~~~-~--~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
....... . .-...+.+..+++.+||+++|++++ .+|+++
T Consensus 80 ~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i 121 (147)
T 3gv1_A 80 RKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ 121 (147)
T ss_dssp HHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred hCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence 1111000 0 1223456778999999999999998 567644
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.68 E-value=7.6e-05 Score=53.32 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=39.7
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc-CCCCcc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF-ELSTLP 279 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~P 279 (350)
++.|+++|||+|+...+.|.+. + +.+..++++ .+ ...++.+.+ ++..+|
T Consensus 8 v~~y~~~~C~~C~~~~~~L~~~-------~--i~~~~vdv~--~~-------------------~~~~l~~~~~~~~~vP 57 (89)
T 2klx_A 8 IILYTRPNCPYCKRARDLLDKK-------G--VKYTDIDAS--TS-------------------LRQEMVQRANGRNTFP 57 (89)
T ss_dssp EEEESCSCCTTTHHHHHHHHHH-------T--CCEEEECSC--HH-------------------HHHHHHHHHHSSCCSC
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECC--HH-------------------HHHHHHHHhCCCCCcC
Confidence 5679999999999988877654 2 334444444 11 124577788 999999
Q ss_pred EEEEECCCCCEE
Q 018808 280 TLVIIGPDGKTL 291 (350)
Q Consensus 280 ~~~lid~~G~i~ 291 (350)
++++ +|+.+
T Consensus 58 ~l~~---~g~~i 66 (89)
T 2klx_A 58 QIFI---GDYHV 66 (89)
T ss_dssp EEEE---TTEEC
T ss_pred EEEE---CCEEE
Confidence 9854 56654
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=97.68 E-value=7.8e-05 Score=61.22 Aligned_cols=105 Identities=11% Similarity=0.142 Sum_probs=74.9
Q ss_pred ceeecccc--CCCEEEEEE-eccCCccChh-hHHHHHHHHHHH-hcCCCcE-EEEEEeCCCCHHHHHHhhcC---CCCcc
Q 018808 188 RKISVSDL--EGKTIGLYF-SMSSYKASAE-FTPRLVEVYEKL-KGKGESF-EIVLISLDDEEESFKRDLGS---MPWLA 258 (350)
Q Consensus 188 ~~v~l~~~--~gk~vlv~f-~~~~C~~C~~-~~~~l~~~~~~~-~~~~~~~-~vv~v~~d~~~~~~~~~~~~---~~~~~ 258 (350)
+.+++++. +||.|||++ -+.+.|.|.. .+|.+.+.++++ +.+| + +|+.|++++ .--+.+|.+. .....
T Consensus 58 ~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kG--vd~I~ciSVND-~FVm~AW~k~~~~~~~~~ 134 (199)
T 4h86_A 58 QTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKE--VDQVIVVTVDN-PFANQAWAKSLGVKDTTH 134 (199)
T ss_dssp EEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSC--CCEEEEEESSC-HHHHHHHHHHTTCCCCSS
T ss_pred eeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcC--CcEEEEEEcCC-HHHHHHHHHHhccccccc
Confidence 46777664 688766665 4678999976 689998888765 6666 4 788899984 4444555443 33356
Q ss_pred ccCCchhHHHHHHHcCCC---------CccEEEEECCCCCEEeccch
Q 018808 259 LPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 296 (350)
++++.|...++.+.+|+. ..-..+||| ||+|.+...-
T Consensus 135 i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE 180 (199)
T 4h86_A 135 IKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKE 180 (199)
T ss_dssp EEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEEC
T ss_pred ccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEe
Confidence 788899999999999972 234568886 8998877653
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=58.21 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=42.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++.|+++|||+|+...+.|.++. +.+..++++.+.+. .+....+.+.+++.++|
T Consensus 50 ~Vvvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~-----------------~~~~~~L~~~~g~~tvP 104 (146)
T 2ht9_A 50 CVVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYG-----------------NQFQDALYKMTGERTVP 104 (146)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTH-----------------HHHHHHHHHHHSCCCSC
T ss_pred CEEEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCC-----------------HHHHHHHHHHhCCCCcC
Confidence 344499999999999998887652 23444555433100 11223688889999999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
++++ +|+.+.
T Consensus 105 ~ifi---~G~~ig 114 (146)
T 2ht9_A 105 RIFV---NGTFIG 114 (146)
T ss_dssp EEEE---TTEEEE
T ss_pred eEEE---CCEEEe
Confidence 9854 677665
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.7e-05 Score=51.66 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=40.5
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+++|||+|+...+.|.+. + +.+..++++.+.+ ...++.+.+++..+|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~~i~~~~~-------------------~~~~~~~~~~~~~vP~ 54 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-------G--VSFQELPIDGNAA-------------------KREEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEECTTCSH-------------------HHHHHHHHHSSCCSCE
T ss_pred EEEEECCCChhHHHHHHHHHHC-------C--CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence 4568999999999988877653 2 3344455553211 1245677889999999
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ +|+.+
T Consensus 55 l~~---~g~~i 62 (82)
T 1fov_A 55 IFI---DAQHI 62 (82)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 853 56655
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00017 Score=49.35 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=40.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++||++|+...+.|.++ .+.+..++++.+.+ ....+ +.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~--------------------~~~~~-~~~~~~~vP~ 53 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDE--------------------ARDYV-MALGYVQAPV 53 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHH--------------------HHHHH-HHTTCBCCCE
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHH--------------------HHHHH-HHcCCCccCE
Confidence 5679999999999988887653 25566677776542 11123 4589999999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
+++ +|+.+
T Consensus 54 l~~---~g~~~ 61 (75)
T 1r7h_A 54 VEV---DGEHW 61 (75)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCeEE
Confidence 874 56543
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=49.38 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=42.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++|||+|+...+.|.+. .+.+..++++.+.+ ....+.+.+++..+|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~~i~~~~~--------------------~~~~~~~~~~~~~vP~ 54 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAA--------------------KREEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSH--------------------HHHHHHHHHSSCCSCE
T ss_pred EEEEECCCChhHHHHHHHHHHC--------CCCcEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 5668999999999988877653 14455566664422 2235777789999999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 55 l~~---~g~~i~ 63 (82)
T 1fov_A 55 IFI---DAQHIG 63 (82)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEe
Confidence 854 676654
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=52.19 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=41.0
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc-CCCC
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF-ELST 277 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 277 (350)
.-++.|+++|||+|++....|.+. + +.+..+.++.+++. ..++.+.. |...
T Consensus 16 ~~v~vy~~~~Cp~C~~ak~~L~~~-------~--i~y~~idI~~~~~~-------------------~~~l~~~~~g~~~ 67 (99)
T 3qmx_A 16 AKIEIYTWSTCPFCMRALALLKRK-------G--VEFQEYCIDGDNEA-------------------REAMAARANGKRS 67 (99)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHH-------T--CCCEEEECTTCHHH-------------------HHHHHHHTTTCCC
T ss_pred CCEEEEEcCCChhHHHHHHHHHHC-------C--CCCEEEEcCCCHHH-------------------HHHHHHHhCCCCC
Confidence 345569999999999998887654 2 44455566644321 13455666 8999
Q ss_pred ccEEEEECCCCCEE
Q 018808 278 LPTLVIIGPDGKTL 291 (350)
Q Consensus 278 ~P~~~lid~~G~i~ 291 (350)
+|+++ + +|+.+
T Consensus 68 vP~if-i--~g~~i 78 (99)
T 3qmx_A 68 LPQIF-I--DDQHI 78 (99)
T ss_dssp SCEEE-E--TTEEE
T ss_pred CCEEE-E--CCEEE
Confidence 99875 4 46655
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0016 Score=53.03 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=69.1
Q ss_pred hhcccccCCceecCCCceeecc----ccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 172 SVLTSHSRDFVISSDGRKISVS----DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 172 ~~~~~~~p~f~~~~~g~~v~l~----~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
...|..-|.|....-.+.+..+ .-.+|+++|++.++||+.|..+...+ .++.+-+++. +-+.+.+++.++
T Consensus 26 ~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~n---fV~w~~dv~~~e 102 (178)
T 2ec4_A 26 SRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQN---FITWAWDLTKDS 102 (178)
T ss_dssp HHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHT---EEEEEEECCSHH
T ss_pred HHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcC---EEEEEEeCCCch
Confidence 3456677888654444455555 55789999999999999888776322 1233333332 777777776432
Q ss_pred HHHHHhhcCCCCccccCCchhHHHH---HHHcCCCCccEEEEECCCC---CEEeccch
Q 018808 245 ESFKRDLGSMPWLALPFKDKSREKL---ARYFELSTLPTLVIIGPDG---KTLHSNVA 296 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~P~~~lid~~G---~i~~~~~~ 296 (350)
....++.... -.. ...+ .+.|++.++|++.+|++.| +++.+..|
T Consensus 103 -~~~~~~~~~~---~~~----g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G 152 (178)
T 2ec4_A 103 -NRARFLTMCN---RHF----GSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQG 152 (178)
T ss_dssp -HHHHHHHHHH---HHT----CHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECS
T ss_pred -hhhhhhhhhh---hhh----HHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeC
Confidence 2222221000 000 0223 3558999999999998774 67777766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 350 | ||||
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-31 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 9e-21 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 2e-23 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 1e-13 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 3e-16 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 7e-08 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 8e-14 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 4e-12 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-07 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 5e-08 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 2e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 8e-08 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 2e-04 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 5e-07 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 8e-06 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 0.004 | |
| d2es7a1 | 119 | c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H | 1e-05 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 4e-05 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 0.003 | |
| d1nhoa_ | 85 | c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik | 1e-04 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 2e-04 | |
| d1wp0a1 | 160 | c.47.1.10 (A:138-297) Thioredoxin-like protein Sco | 2e-04 | |
| d1wjka_ | 100 | c.47.1.1 (A:) Thioredoxin-like structure containin | 0.001 | |
| d1z5ye1 | 136 | c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG | 0.001 | |
| d1xzoa1 | 172 | c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 | 0.002 | |
| d1zmaa1 | 115 | c.47.1.1 (A:1-115) Bacterocin transport accessory | 0.004 | |
| d1qgva_ | 137 | c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human | 0.004 |
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 114 bits (286), Expect = 1e-31
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC P + FTP L + Y + + +FEV+ +S DE
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV ++ ++G +++ ++
Sbjct: 73 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 133 KDPEAKDFPW 142
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 85.2 bits (210), Expect = 9e-21
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S S FTP+L++ Y+ K ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSN-VAEA 298
+ E FK MPWLALPF+D K E L F++ ++PTLV + D G + +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Query: 299 IEEHGVGAFPF 309
+++ FP+
Sbjct: 132 VKDPEAKDFPW 142
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 92.3 bits (228), Expect = 2e-23
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+ S +V L SL GK + LYFSASWC PC+ FTP+LAE Y + +FEV+ +S DE
Sbjct: 13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVL-SDGGVEII 139
++ F Y+ KMPWLA+PF T +L + F V IP L+ ++ + G ++ + +I
Sbjct: 73 NESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVI 132
Query: 140 REYGVEGYPFT 150
+ +P+
Sbjct: 133 EDPDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 65.0 bits (157), Expect = 1e-13
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWDENE 74
Query: 245 ESFKRDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPD-GKTLHSNV-AEAIEE 301
F G MPWLALPF + + +L + F + ++PTL+ I D G + + IE+
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 302 HGVGAFPFT 310
FP+
Sbjct: 135 PDGANFPWP 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 72.8 bits (177), Expect = 3e-16
Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 3/131 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+R +V++ SL GK + YFSASWC P + FTP L E Y++ +FEV+F + DE
Sbjct: 11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE 70
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEII 139
+++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++ ++
Sbjct: 71 EEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 130
Query: 140 REYGVEGYPFT 150
++ E +P+
Sbjct: 131 KDPEGEQFPWK 141
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 48.9 bits (115), Expect = 7e-08
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
+ ++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D
Sbjct: 11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWD 69
Query: 242 DEEESFKRDLGSMPWLALPFKDK-SREKLARYFELSTLPTLVIIGPD-GKTLHSN-VAEA 298
+EE+ F MPWLA+PF + +KL+++F + ++PTL+ + D G + + A
Sbjct: 70 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129
Query: 299 IEEHGVGAFPFTP 311
+++ FP+
Sbjct: 130 VKDPEGEQFPWKD 142
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 65.7 bits (159), Expect = 8e-14
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
NG+ + + K ++F + C C+ P + E ++ Q + + + EDD
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLD 77
Query: 86 FKGYFSKMPWLAVPFSDSETRDK-LDELFKVMGIPHLVILDENGKV 130
+ D L + F+ +P + D+ G++
Sbjct: 78 PGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQL 123
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 61.1 bits (147), Expect = 4e-12
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 4/113 (3%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
L ++ + K K + F ASWC C + + + S
Sbjct: 8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGF 67
Query: 82 DDEAFKGYFSKMP---WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
E G F K ++ + + + P ++ ++G V
Sbjct: 68 LHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQ 120
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 184 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 243
++D R SV + K + F S + + + K + V
Sbjct: 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69
Query: 244 ---EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+ F++ + + LP + +A+ +S P+ +IG DG E
Sbjct: 70 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINE 129
Query: 301 EH 302
Sbjct: 130 AQ 131
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.2 bits (116), Expect = 5e-08
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 10/140 (7%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77
F +G SL+GK + + W C + + + +
Sbjct: 4 RLQFTATTLSGAPFDGASLQGKPAVLWF--WTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
Query: 78 SGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137
+ D A + + SK +D++ + + V P V +G
Sbjct: 62 ATRADVGAMQSFVSKYNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRADGTS-----TF 114
Query: 138 IIREYGVEGYPFTVERIKEM 157
+ R+ +
Sbjct: 115 VNNPTAAMSQDELSGRVAAL 134
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.8 bits (89), Expect = 2e-04
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 6/111 (5%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
F + G + L+GK + + F ++ + V I
Sbjct: 6 QFTATTLSGAPFDGASLQGK----PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ + + + + D + + + P V DG
Sbjct: 62 ATRADVGAMQSFVSKYNLNFTNLNDADGV-IWARYNVPWQPAFVFYRADGT 111
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 49.3 bits (116), Expect = 8e-08
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D ++G KL +GK L A+WC PC++ P L E+ +LS V
Sbjct: 38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINI 97
Query: 79 GDEDDEAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVL 131
D E K + + + + ++ L + + +G+P V++D G +
Sbjct: 98 DTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 153
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMS---SYKASAEFTPRLVEVYEKLKGKGESFEI 235
D +DG+ +SD GKT+ + + + L + + I
Sbjct: 38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINI 97
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
+ + K + K K + L +PT V++ P G
Sbjct: 98 DTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC------ 151
Query: 296 AEAIEEHGVGAFPFTPEKFAEL 317
G + E +L
Sbjct: 152 ---EIATIAGPAEWASEDALKL 170
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 5e-07
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 26 SNGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
+ +L ++ + L WC CQ L Q + E+ +S ++
Sbjct: 42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRL---QPNIELAIISKGRAED 98
Query: 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ + + ++ + L + + P V+ +
Sbjct: 99 DLRQRLALERIAIPLVLVLD--EEFNLLGRFVERPQAVLDGGPQAL 142
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.7 bits (99), Expect = 8e-06
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 6/112 (5%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
F +G +SL GK + F A WC CQ P++ +V V +
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
Query: 79 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ F + + + +D F V P +D +G V
Sbjct: 67 QVPAMQEFVNKYPVKTFTQLADTDGSVWAN----FGVTQQPAYAFVDPHGNV 114
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 34.7 bits (78), Expect = 0.004
Identities = 16/111 (14%), Positives = 27/111 (24%), Gaps = 5/111 (4%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
F + DG L GK L+F P + +V L
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ +E + + F ++ P + P G
Sbjct: 67 QVPAMQEFVNKYPVKTFTQLADTDGS----VWANFGVTQQPAYAFVDPHGN 113
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Score = 41.9 bits (98), Expect = 1e-05
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 29 DQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
D G I L ++AE+ E Q D++V ++ +
Sbjct: 22 DDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEA 76
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 4e-05
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99
+ + SWCG C+ P AE +F ++ + +E+ + +
Sbjct: 28 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 87
Query: 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGY 147
F D E+ G P + + + G E + +
Sbjct: 88 FLDPS-GKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.003
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF--KRDLGS 253
G + + S A P+ E E + V+++L+DEEE
Sbjct: 24 SGLPLMVIIHKSWCGACKALKPKFAESTEISELSH---NFVMVNLEDEEEPKDEDFSPDG 80
Query: 254 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 307
+ F D S + + P+ + + + EA E AF
Sbjct: 81 GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 38.1 bits (88), Expect = 1e-04
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 27/101 (26%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
F++ C C ++ E + V
Sbjct: 6 EVFTSPTCPYCPMAIEVVDEA--------------------------KKEFGDKIDVEKI 39
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREY 142
D + + +M +P + I + + + E + E
Sbjct: 40 DIMVDREKAIEYGLMAVPAIAI-NGVVRFVGAPSREELFEA 79
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
L ++ E+ E ++V ++ +
Sbjct: 41 LSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEA 82
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 14/150 (9%)
Query: 21 DF-LIRSNGDQVKLDSLKGKI-GLYFSASWC-GPCQRFTPILAEVYNELSRQGD------ 71
F L G++ G+ +YF + C C + +V +E+
Sbjct: 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 61
Query: 72 -FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
F I D + P L E D++ ++V P DE+ V
Sbjct: 62 LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIV 121
Query: 131 LSDGGVEIIREYG----VEGYPFTVERIKE 156
+ +I G G I
Sbjct: 122 DHTIIMYLIGPDGEFLDYFGQNKRKGEIAA 151
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.9 bits (82), Expect = 0.001
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP------- 94
F+ + C C +L + + + ++ E+ ++ Y +P
Sbjct: 20 TLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFDIPVFHLNGQ 75
Query: 95 -WLAVPFSDSETRDKLDEL 112
+ + S+ +L +L
Sbjct: 76 FLMMHRVNTSKLEKQLRKL 94
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.001
Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 15/137 (10%)
Query: 26 SNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ G + D L +GK + L A+WC + Y V+ ++ +D
Sbjct: 7 NPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQ-----YLNQLSAQGIRVVGMNYKDDR 61
Query: 84 EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYG 143
+ + ++ S + L V G P ++D NG + R G
Sbjct: 62 QKAISWLKELGNP-YALSLFDGDGMLGLDLGVYGAPETFLIDGNGII-------RYRHAG 113
Query: 144 VEGYPFTVERIKEMKEQ 160
E IK + E+
Sbjct: 114 DLNPRVWEEEIKPLWEK 130
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Score = 36.1 bits (82), Expect = 0.002
Identities = 24/173 (13%), Positives = 49/173 (28%), Gaps = 29/173 (16%)
Query: 10 DIQSLLSSSARDF-LIRSNGDQVKLDSLKGKIGL--YFSASWCGPCQRFTPILAEVYNEL 66
I+ L+ F +G V L+SLKG++ L + + C T + ++ +L
Sbjct: 2 QIKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKL 61
Query: 67 SRQGDFEVIFVSG-----------DEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115
+ I + + F +L L +
Sbjct: 62 KAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAI 121
Query: 116 MGIP----------HLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMK 158
+ P ++ +GKV ++ Y + +K
Sbjct: 122 VKKPEGEDQVIHQSSFYLVGPDGKV-----LKDYNGVENTPYDDIISDVKSAS 169
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Score = 34.5 bits (78), Expect = 0.004
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA--VP 99
+ C C++F L+ V E F +D +P + V
Sbjct: 31 FFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVH 90
Query: 100 FSDSETRDKLD 110
+D + + D
Sbjct: 91 ITDGQINVRCD 101
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.7 bits (79), Expect = 0.004
Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 34/128 (26%)
Query: 8 SHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELS 67
S+ + L + D I S D+V + + F W C + +L + ++
Sbjct: 1 SYMLPHLHNGWQVDQAILSEEDRVVV--------IRFGHDWDPTCMKMDEVLYSIAEKVK 52
Query: 68 RQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127
+ +++P +++++ ++ N
Sbjct: 53 NFAVI-------------YLVDITEVPDFN-------------KMYELYDPCTVMFFFRN 86
Query: 128 GKVLSDGG 135
++ D G
Sbjct: 87 KHIMIDLG 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.94 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.93 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.93 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.93 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.92 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.92 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.92 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.91 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.91 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.9 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.89 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.89 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.89 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.88 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.88 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.88 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.87 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.87 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.87 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.86 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.85 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.85 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.84 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.83 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.83 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.83 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.83 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.82 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.82 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.8 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.8 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.8 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.79 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.79 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.79 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.78 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.78 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.77 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.76 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.75 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.75 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.74 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.74 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.74 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.73 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.73 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.73 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.72 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.71 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.68 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.68 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.67 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.66 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.66 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.66 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.65 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.64 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.64 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.63 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.63 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.63 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.62 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.6 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.59 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.58 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.58 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.58 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.56 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.56 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.55 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.54 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.54 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.53 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.52 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.52 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.52 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.52 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.52 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.52 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.49 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.49 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.48 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.48 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.46 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.46 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.46 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.45 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.45 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.42 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.42 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.41 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.41 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.4 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.4 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.39 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.39 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.38 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.38 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.38 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.38 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.36 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.36 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.34 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.33 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.33 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.33 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.32 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.32 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.31 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.31 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.29 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.28 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.27 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.27 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.24 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.24 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.23 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.22 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.22 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.19 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.17 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.17 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.16 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.14 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.11 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.08 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.06 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.0 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.99 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.99 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.97 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.97 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.96 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.93 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.89 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.88 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.86 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.8 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.64 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.55 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.54 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.54 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.36 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.29 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.25 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 98.03 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.94 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.91 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.9 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.86 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.83 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.71 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.42 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.4 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.37 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.26 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.16 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 97.01 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.75 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 96.32 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.3 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.28 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 96.17 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.14 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.09 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 96.07 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 95.85 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 95.84 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.81 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 95.75 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.6 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 95.52 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.33 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 94.71 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 93.99 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 93.52 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 91.59 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 91.52 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 90.67 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 90.1 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 89.66 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 88.26 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 84.88 |
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.94 E-value=1e-26 Score=184.85 Aligned_cols=137 Identities=36% Similarity=0.613 Sum_probs=118.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
-++..+|++ ....+|..+++++++||+|+|+|||+||++|+.++|.|+++++++... .++++++|+.|.+.+.+.+++
T Consensus 3 ~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~ 81 (144)
T d1o73a_ 3 GLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYY 81 (144)
T ss_dssp GGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHH
T ss_pred CcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHH
Confidence 356788999 567778889999999999999999999999999999999999999643 239999999999999999999
Q ss_pred cCCCCccccCCch-hHHHHHHHcCCCCccEEEEECCC-CCEEeccch-hhhhhcCCccCCCC
Q 018808 252 GSMPWLALPFKDK-SREKLARYFELSTLPTLVIIGPD-GKTLHSNVA-EAIEEHGVGAFPFT 310 (350)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~-~~~~~~~~~~~p~~ 310 (350)
.+..|..+++..+ ...++.+.|++.++|+++|||++ |+|+.+..+ ...+++....|||-
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 82 GKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp TTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 9988888887554 45679999999999999999998 999998764 56677777889984
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.93 E-value=1.3e-25 Score=178.02 Aligned_cols=128 Identities=36% Similarity=0.671 Sum_probs=111.0
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccC
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (350)
+++.+|..+++++++||+|+|+|||+||++|+.++|.|++++++++++ .+++|++|+.|.+.+++++++++++|..+++
T Consensus 13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~ 91 (144)
T d1i5ga_ 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPF 91 (144)
T ss_dssp EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCCceee
Confidence 567788999999999999999999999999999999999999999875 2499999999999999999999999877776
Q ss_pred Cchh-HHHHHHHcCCCCccEEEEECCC-CCEEeccchhhh-hhcCCccCCCC
Q 018808 262 KDKS-REKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAI-EEHGVGAFPFT 310 (350)
Q Consensus 262 ~~~~-~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~-~~~~~~~~p~~ 310 (350)
.... ...+.+.|+|.++|+++|||++ |+|+.+...... +++....|||-
T Consensus 92 ~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~ 143 (144)
T d1i5ga_ 92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred EChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence 5444 3468899999999999999996 999988765544 55666789984
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=3.5e-26 Score=189.22 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=108.9
Q ss_pred hhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CC
Q 018808 172 SVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DE 243 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~ 243 (350)
-.+|.++|+| +.+.+|+.++|++++||+|||+||++|||+|+.++|.|++++++|+++ +.+++|++. ++
T Consensus 6 l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~ 82 (187)
T d2cvba1 6 LPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDA 82 (187)
T ss_dssp CCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGS
T ss_pred CCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccc
Confidence 3578999999 899999999999999999999999999999999999999999999864 899999863 35
Q ss_pred HHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 244 EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+.++++.++++ +++|++.|.++++++.|++.++|++||||++|+|+++...
T Consensus 83 ~e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~i 134 (187)
T d2cvba1 83 PEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRV 134 (187)
T ss_dssp HHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECS
T ss_pred hHHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeee
Confidence 677888888776 7899999999999999999999999999999999987543
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.93 E-value=1.5e-25 Score=178.01 Aligned_cols=136 Identities=38% Similarity=0.740 Sum_probs=119.1
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
+|..+|+|+. ..+|..+++++++|| ++|+||++||++|+.++|.|.++++++.++.++.+++|+.|...+.+++++..
T Consensus 4 ~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 83 (144)
T d1o73a_ 4 LAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGK 83 (144)
T ss_dssp GGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTT
T ss_pred cccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHh
Confidence 4789999966 677888999999999 99999999999999999999999999976546999999999999999999999
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCC-CeEEecCCc-cceecccCcCCCCC
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGV-EIIREYGVEGYPFT 150 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~~~-~~~~~~~~~~~p~~ 150 (350)
.+|..+++.+.+....+.+.|+++++|+++|||++ |+++..++. +...+.....|||.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp CSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred ccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 99988888777777789999999999999999997 899987653 44556667777763
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.92 E-value=4e-25 Score=175.66 Aligned_cols=138 Identities=29% Similarity=0.590 Sum_probs=120.2
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhc
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG 252 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 252 (350)
++..+|+| +.+.+|+++++++++||+|+|+||++||++|+.++|.|.++++++.... .+.+++|+.|++.+++..+..
T Consensus 2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~~~~~~~~~ 80 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFA 80 (144)
T ss_dssp GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHT
T ss_pred CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccHHHHHHHHh
Confidence 35678999 7899999999999999999999999999999999999999999997652 499999999999999999998
Q ss_pred CCCCccccCCc-hhHHHHHHHcCCCCccEEEEECCC-CCEEeccch-hhhhhcCCccCCCCcc
Q 018808 253 SMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSNVA-EAIEEHGVGAFPFTPE 312 (350)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~-~~~~~~~~~~~p~~~~ 312 (350)
...+..+++.. +...++.+.|++.++|+++|||++ |+|+..... ...++.....|||...
T Consensus 81 ~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~~ 143 (144)
T d1o8xa_ 81 KMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDA 143 (144)
T ss_dssp TCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred hccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCCC
Confidence 88888887754 456789999999999999999998 899988754 4556677778898754
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.2e-25 Score=177.07 Aligned_cols=120 Identities=23% Similarity=0.431 Sum_probs=112.5
Q ss_pred ccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 175 TSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
|.++|+| +.+.+|+.+++++++||+++|+||++||++|+.+++.++++++++.+.+ +.+++|+++++.++++++.++
T Consensus 2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~ 79 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKS 79 (137)
T ss_dssp CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHH
T ss_pred cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHH
Confidence 6789999 8899999999999999999999999999999999999999999999887 999999999999999999987
Q ss_pred CCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 254 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+. +++|+..|...++.+.|++.++|+++|||++|++++++.|.
T Consensus 80 ~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~ 122 (137)
T d1st9a_ 80 YG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGT 122 (137)
T ss_dssp TT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESC
T ss_pred cC-CCccccccccchhhhhhhccccceEEEECCCCEEEEEEECC
Confidence 76 67888888888999999999999999999999999998884
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=4.6e-25 Score=172.99 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=104.3
Q ss_pred ccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 175 TSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
|...++| +.+.+|+.+++++++||++||+||++|||+|+.++|.|++++++++ + +.+++|+.+++.+.+++|.++
T Consensus 1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~--v~~v~v~~~~~~~~~~~~~~~ 76 (134)
T d1lu4a_ 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSK 76 (134)
T ss_dssp CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--c--ccccccccccchhhhhhhhhh
Confidence 3567899 7899999999999999999999999999999999999999988764 3 889999999999999999988
Q ss_pred CCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 254 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
++ +.+|...|...++.+.||+.++|+++|||++|+++...
T Consensus 77 ~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~ 116 (134)
T d1lu4a_ 77 YN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVN 116 (134)
T ss_dssp HT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEEC
T ss_pred hc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEe
Confidence 76 78888888888999999999999999999999987643
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.91 E-value=1.5e-24 Score=171.85 Aligned_cols=127 Identities=36% Similarity=0.759 Sum_probs=112.8
Q ss_pred eeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 23 ~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
.++.+|..+++++++|| ++|+||++||++|+.++|.|.+++++++++.++.+++|+.|.+.++++++++..+|..+++.
T Consensus 13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1i5ga_ 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE 92 (144)
T ss_dssp EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence 34568889999999999 99999999999999999999999999988667999999999999999999999999988888
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECCC-CeEEecCCcccee-cccCcCCCC
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGVEIIR-EYGVEGYPF 149 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~~~~~~~-~~~~~~~p~ 149 (350)
+.+....+.+.|++.++|+++|||++ |+|+...+...+. +.....|||
T Consensus 93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw 142 (144)
T d1i5ga_ 93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142 (144)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred ChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCC
Confidence 88777789999999999999999996 9999887765543 456667776
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.91 E-value=3.9e-24 Score=169.84 Aligned_cols=137 Identities=39% Similarity=0.769 Sum_probs=120.7
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
+|..+|+|++ +.+|+++++++++|| ++|+||++||++|+.++|.|.+++++++.+..+.++.|+.+.+.+.++.++..
T Consensus 2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~ 81 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAK 81 (144)
T ss_dssp GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTT
T ss_pred CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhh
Confidence 3778999977 789999999999999 99999999999999999999999999987667999999999999999999998
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCC-CeEEecCCc-cceecccCcCCCCCh
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGV-EIIREYGVEGYPFTV 151 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~~~-~~~~~~~~~~~p~~~ 151 (350)
..+..+++...+...++.+.|+++++|+++|+|++ |+|+...+. ....+.....|||..
T Consensus 82 ~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~ 142 (144)
T d1o8xa_ 82 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD 142 (144)
T ss_dssp CSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred ccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence 88888888777777799999999999999999987 899987764 334556677777753
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=4.3e-24 Score=167.46 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=102.4
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCc
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWL 257 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 257 (350)
.+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|.++++++++ ..+++|+.+++....++++..+.+.
T Consensus 6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~~ 81 (134)
T d1zzoa1 6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVK 81 (134)
T ss_dssp GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTCT
T ss_pred cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCCc
Confidence 468 78999999999999999999999999999999999999999998864 6688889888999999999988877
Q ss_pred cccCCchhHHHHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 258 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
.++.+.|.+.++.+.||+.++|+++|||++|+|....
T Consensus 82 ~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~ 118 (134)
T d1zzoa1 82 TFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR 118 (134)
T ss_dssp TSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred ceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence 8898888888999999999999999999999987643
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.89 E-value=6.7e-24 Score=168.25 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=104.2
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-----CHHHHHHhhcCCCC
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-----EEESFKRDLGSMPW 256 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~ 256 (350)
+.+.+|+.+++++++||+++|+|||+|||+|+.++|.|++++++++..+ +.+++|+.+. ...+..++.....+
T Consensus 8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (143)
T d2fy6a1 8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLNY 85 (143)
T ss_dssp CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcCC
Confidence 6789999999999999999999999999999999999999999999887 9999999852 45566777777778
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
..+|+..|..+++++.|++.++|+++|||++|+|+++..|.+
T Consensus 86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~ 127 (143)
T d2fy6a1 86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI 127 (143)
T ss_dssp TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCC
T ss_pred cccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCC
Confidence 889999999999999999999999999999999999988843
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=3e-23 Score=171.36 Aligned_cols=119 Identities=13% Similarity=0.246 Sum_probs=101.6
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~ 85 (350)
+|+++|+|++ +.+|+.++|++++|| ++|+||++|||+|+.++|.|.+++++|++ ++.+++|+.+ ...+.
T Consensus 8 vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~ 85 (187)
T d2cvba1 8 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEK 85 (187)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHH
T ss_pred CCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHH
Confidence 5999999988 789999999999999 99999999999999999999999999976 4889998753 24567
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCcc
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~ 137 (350)
++++.+..++......|.+ ..+++.|++..+|+++|+|++|+++|++.+.
T Consensus 86 ~~~~~~~~~~~~p~l~D~~--~~~~~~~~v~~~P~~~liD~~G~i~y~G~id 135 (187)
T d2cvba1 86 MAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDERRLLRYHGRVN 135 (187)
T ss_dssp HHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECTTCBEEEEECSS
T ss_pred HHHHHHHhCCcceeeechh--hhhcccccccceeeEEEEcCCCeEEEEeeec
Confidence 8888888775443344433 4899999999999999999999999986544
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.8e-23 Score=165.69 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=105.7
Q ss_pred cccccCCc-eec--CCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-----CHH
Q 018808 174 LTSHSRDF-VIS--SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-----EEE 245 (350)
Q Consensus 174 ~~~~~p~f-~~~--~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~ 245 (350)
+|.++|+| ..+ .+|+.++++.++||+++|+||++|||+|+.++|.|+++++++++. +.+++|+++. +.+
T Consensus 3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~ 79 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG 79 (143)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchh
Confidence 57889999 343 589999999999999999999999999999999999999999864 8899998853 456
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++++.++++ +++|+..|.+.++.+.|++.++|++++||++|+|++++.|.
T Consensus 80 ~~~~~~~~~~-~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~ 130 (143)
T d2b5xa1 80 KIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGG 130 (143)
T ss_dssp HHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESC
T ss_pred hhhhHHHhhc-cCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEECC
Confidence 6788888777 57888888888999999999999999999999999998884
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.88 E-value=6.7e-23 Score=168.16 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=104.1
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDL 251 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~ 251 (350)
.+.++|+| +.+.+|+.+++++++||++||+||++||++|+.+++.++++++++...+ +.+++|+.| ++.+++++|+
T Consensus 32 ~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~ 109 (176)
T d1jfua_ 32 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFL 109 (176)
T ss_dssp SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHH
T ss_pred CCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhH
Confidence 34569999 8999999999999999999999999999999999999999999999887 999999998 4678889998
Q ss_pred cCCCCccccCCchhH----HHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 252 GSMPWLALPFKDKSR----EKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~----~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++.+...++..+.. ..+...|++.++|+++|||++|+|+.++.|.
T Consensus 110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~ 159 (176)
T d1jfua_ 110 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGP 159 (176)
T ss_dssp HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESC
T ss_pred hhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECC
Confidence 877654444544433 3455567788999999999999999998874
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.88 E-value=3.3e-23 Score=164.37 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=98.0
Q ss_pred ccCCc-eecCCC--------ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 177 HSRDF-VISSDG--------RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 177 ~~p~f-~~~~~g--------~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
+||+| ++..+| ..+++++++||++||+||++||++|+.++|.+.++++.+ + +++++|+.+.+..+.
T Consensus 2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~--~~~~~i~~~~~~~~~ 76 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---R--FQLVGINYKDAADNA 76 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---T--SEEEEEEESCCHHHH
T ss_pred CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc---C--ceeEEEEeeechHHH
Confidence 56666 444444 678889999999999999999999999999998886554 2 789999999898889
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++..++.+...+...|...++.+.|++.++|+++|||++|+|++++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~ 126 (144)
T d1knga_ 77 RRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGP 126 (144)
T ss_dssp HHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEESC
T ss_pred HHHHHHcCCccccccccccchhhhhcCccccceEEEEcCCCeEEEEEeCC
Confidence 98888776555556777788899999999999999999999999998874
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=4.4e-22 Score=156.43 Aligned_cols=115 Identities=28% Similarity=0.572 Sum_probs=102.1
Q ss_pred cCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 16 SSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
|+++|+|++ +.+|+++++++++|| ++|+||++||++|..+++.+.++++++.+++ +.+++|+++++.+.++++...+
T Consensus 2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~v~i~~~~~~~~~~~~~~~~ 80 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHNFMKSY 80 (137)
T ss_dssp CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCCHHHHHHHHHHT
T ss_pred cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc-cccccccccchhhhHHHHHHHc
Confidence 789999988 679999999999999 9999999999999999999999999998874 9999999998999999999987
Q ss_pred CCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++. +++. .+....+++.|++.++|+++|+|++|+++++
T Consensus 81 ~~~-~~~~-~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 118 (137)
T d1st9a_ 81 GVN-FPVV-LDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 118 (137)
T ss_dssp TCC-SCEE-EETTSHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred CCC-cccc-ccccchhhhhhhccccceEEEECCCCEEEEE
Confidence 654 3322 2233589999999999999999999999885
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=9.2e-22 Score=153.87 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=97.7
Q ss_pred cCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 16 SSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
|+.+|+|++ +.+|+++++++++|| ++|+||++|||+|+.++|.|.+++++++ ++.++.|+.+++.+.++++.+.+
T Consensus 1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~ 77 (134)
T d1lu4a_ 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKY 77 (134)
T ss_dssp CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHH
T ss_pred CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhh
Confidence 678999988 789999999999999 9999999999999999999999998764 48899999999999999999887
Q ss_pred CCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 94 PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
+.....+.+ ....+++.|++.++|+++++|++|++++
T Consensus 78 ~~~~p~~~d--~~~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (134)
T d1lu4a_ 78 NLNFTNLND--ADGVIWARYNVPWQPAFVFYRADGTSTF 114 (134)
T ss_dssp TCCSEEEEC--TTSHHHHHTTCCSSSEEEEECTTSCEEE
T ss_pred ccccceeeC--chHHHHHHcCCCcCCEEEEEeCCCeEEE
Confidence 653332333 3357999999999999999999999875
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.5e-23 Score=161.95 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=95.2
Q ss_pred ecCCCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccC
Q 018808 183 ISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 183 ~~~~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (350)
.|..|+.++.+++ +||+|||+|||+||++|+.++|.|+++++ ++ +.+++++.+.+......++.+..+..++.
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYALS 78 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCcccee
Confidence 3567999999998 89999999999999999999999988753 34 88999999988888888888766566666
Q ss_pred CchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 262 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
..|.++.+.+.|++.++|+++|||++|+|+.++.|.
T Consensus 79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~ 114 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGD 114 (136)
T ss_dssp EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEESC
T ss_pred ecccchhHHHhcccCCcceEEEEcCCCEEEEEEEcC
Confidence 667778899999999999999999999999998884
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.87 E-value=3.9e-22 Score=161.36 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=104.8
Q ss_pred hcccccCCc-eec----CCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 173 VLTSHSRDF-VIS----SDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~~----~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
++|.++|+| +.+ .+++++++++++||++||+||.. |||+|..+++.+++.++++.+.| +++++||.| +.+.
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D-~~~~ 78 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTD-THFV 78 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccc-cHHH
Confidence 689999999 543 45678999999999999999966 99999999999999999999998 999999998 5655
Q ss_pred HHHhhcCC---CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 247 FKRDLGSM---PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 247 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
.+++.+++ ..++||++.|.+++++++||+. ..|++||||++|+|++...+
T Consensus 79 ~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~ 137 (166)
T d1we0a1 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEIN 137 (166)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred HHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEc
Confidence 56666554 2378999999999999999983 57889999999999988765
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.86 E-value=1.1e-21 Score=159.64 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=103.5
Q ss_pred hcccccCCc-eecCCC---------------ceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEE
Q 018808 173 VLTSHSRDF-VISSDG---------------RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEI 235 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g---------------~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 235 (350)
.+|.++|+| +.+..| +.+++++++||++||+|| ++|||+|..+++.+.+.++++++.| +++
T Consensus 4 ~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~v 81 (169)
T d2bmxa1 4 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQI 81 (169)
T ss_dssp CTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEE
T ss_pred CCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--cce
Confidence 368899999 666655 689999999999999998 9999999999999999999999998 999
Q ss_pred EEEeCCCCHHHHHHhhc---CCCCccccCCchhHHHHHHHcCC-----CCccEEEEECCCCCEEeccch
Q 018808 236 VLISLDDEEESFKRDLG---SMPWLALPFKDKSREKLARYFEL-----STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 236 v~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v-----~~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+.|+ .....++.. ....++||++.|.+.+++++||+ ...|++||||++|+|++.+.+
T Consensus 82 v~is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~ 149 (169)
T d2bmxa1 82 LGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSAT 149 (169)
T ss_dssp EEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEE
T ss_pred eeccccc-hhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEEc
Confidence 9999994 333344433 33357899999999999999998 678999999999999988765
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.85 E-value=1.2e-21 Score=159.13 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=102.8
Q ss_pred hhcccccCCc-----eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH
Q 018808 172 SVLTSHSRDF-----VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 172 ~~~~~~~p~f-----~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 245 (350)
..+|.+||+| +.|.+|+.++|++++||+|||+|| ++||++|..+++.|++.++++.+.+ +++++|+.|. ..
T Consensus 3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~-~~ 79 (167)
T d1e2ya_ 3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDS-EY 79 (167)
T ss_dssp CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSC-HH
T ss_pred ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCc-HH
Confidence 3578999999 347899999999999999999999 9999999999999999999999988 9999999984 33
Q ss_pred HHHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 246 SFKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 246 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
...++.... ..+.++.+.|....+.+.|++. ..|++||||++|+|++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~ 142 (167)
T d1e2ya_ 80 SHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIIN 142 (167)
T ss_dssp HHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred hHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEc
Confidence 333443322 2367888899999999999982 47899999999999988765
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=5.7e-21 Score=149.35 Aligned_cols=111 Identities=24% Similarity=0.387 Sum_probs=96.7
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
...+|++ +.+|+++++++++|| ++|+||++|||+|+.++|.|.++++++++ ..++.|+.++..+..+++...+++
T Consensus 4 ~~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~ 80 (134)
T d1zzoa1 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPV 80 (134)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTC
T ss_pred CCcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCC
Confidence 3457988 789999999999999 99999999999999999999999999864 668888888888999999999887
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
..++.. .|....+.+.|++.++|+++++|++|++.+
T Consensus 81 ~~~~~l-~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~ 116 (134)
T d1zzoa1 81 KTFTQL-ADTDGSVWANFGVTQQPAYAFVDPHGNVDV 116 (134)
T ss_dssp TTSEEE-ECTTCHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred cceeEE-eeccchHHHhcCCCccCeEEEECCCCeEEE
Confidence 766643 233458999999999999999999999866
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.84 E-value=4.1e-22 Score=160.87 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=105.2
Q ss_pred cccccCCc-eecCCCceeecccc--CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDL--EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~--~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
+|.++|+| +.+.+|+.++++++ +||+++|+|| ++|||+|..+++.++++++++.+.+ +.+++|+.| +.+..++
T Consensus 4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~ 80 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKK 80 (160)
T ss_dssp TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESS-CHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--ccccccccc-chhhhhh
Confidence 68899999 88999999999997 7898888888 8999999999999999999999888 999999998 6666777
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCC----------CCccEEEEECCCCCEEeccchh
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFEL----------STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v----------~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+..+.. +.++++.|.+..+.+.||+ .+.|++||||++|+|++++.+.
T Consensus 81 ~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~ 137 (160)
T d2cx4a1 81 FKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD 137 (160)
T ss_dssp HHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS
T ss_pred hcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeC
Confidence 766554 6778888888999999998 3478999999999999998763
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=4.3e-21 Score=153.55 Aligned_cols=119 Identities=8% Similarity=0.165 Sum_probs=99.3
Q ss_pred cccccCCc-eecCCCceeeccccCCC--EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGK--TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk--~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
+|.++|+| +.+.+|+.+++++++|| +|+++||++|||+|..+++.|+++++++...+ +++++|+.| +.+..++|
T Consensus 4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d-~~~~~~~~ 80 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG-PPPTHKIW 80 (153)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC-CHHHHHHH
T ss_pred CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccch-hhhHHHHH
Confidence 68999999 88999999999999995 45555679999999999999999999999888 999999997 67777888
Q ss_pred hcCCCCccccCCch--hHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDK--SREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~--~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
..+.+ +.++.+.+ ...++.+.||+. ..|++||||++|+|++.+..
T Consensus 81 ~~~~~-~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~ 133 (153)
T d1xvwa1 81 ATQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMK 133 (153)
T ss_dssp HHHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEEC
T ss_pred hhhhc-cceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEe
Confidence 87665 45555433 467899999973 35689999999999987654
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.83 E-value=1.3e-20 Score=152.97 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=102.4
Q ss_pred hcccccCCc-eecCCC-----ceeeccccCCC-EEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 173 VLTSHSRDF-VISSDG-----RKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g-----~~v~l~~~~gk-~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
++|.+||+| +.+.+| +.++|+++.|| ++|++|| +.|||.|..+++.+++.++++++.+ +++++|+.|. .
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~-~ 78 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-E 78 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-H
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccc-h
Confidence 578999999 776666 57999999986 8999999 8999999999999999999999998 9999999984 4
Q ss_pred HHHHHhhcCC------CCccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccch
Q 018808 245 ESFKRDLGSM------PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 245 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~ 296 (350)
....+|.+.. ..++++++.|...++.+.||+. ..|++||||++|+|++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~ 141 (170)
T d1zofa1 79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVIN 141 (170)
T ss_dssp HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEE
T ss_pred hhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEe
Confidence 4444444332 3578899999999999999983 57899999999999987754
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.83 E-value=1e-20 Score=156.25 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=104.0
Q ss_pred hcccccCCce-----ecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 173 VLTSHSRDFV-----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 173 ~~~~~~p~f~-----~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
..+.+||+|. .+.+|+.++|++++||++||+|| +.||+.|..+++.++++++++...| ++|++||.|. ...
T Consensus 4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds-~~s 80 (194)
T d1uula_ 4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDS-EYS 80 (194)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHH
T ss_pred ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCc-hhh
Confidence 3467899993 36788999999999999999999 9999999999999999999999988 9999999994 434
Q ss_pred HHHhhcCC------CCccccCCchhHHHHHHHcCC------CCccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSM------PWLALPFKDKSREKLARYFEL------STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+++.+.+ ..++||++.|.++++++.||+ ...|++||||++|+|++.+...
T Consensus 81 ~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~ 143 (194)
T d1uula_ 81 HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVND 143 (194)
T ss_dssp HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred hhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEec
Confidence 44444432 357899999999999999998 3478999999999999987553
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.83 E-value=9.4e-20 Score=149.13 Aligned_cols=118 Identities=25% Similarity=0.483 Sum_probs=99.0
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-CHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-~~~~~~~~~~ 91 (350)
.+.++|+|++ +.+|++++|++++|| ++|+||++||++|..+.+.+.++++++.+++ +.++.|+++. +.+.+++|.+
T Consensus 32 ~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~-~~vv~vs~d~~~~~~~~~~~~ 110 (176)
T d1jfua_ 32 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN-FEVVAINIDTRDPEKPKTFLK 110 (176)
T ss_dssp SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT-EEEEEEECCCSCTTHHHHHHH
T ss_pred CCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc-cccccccccccchhhhhhhHh
Confidence 3557999988 689999999999999 9999999999999999999999999998874 8999999874 5778899999
Q ss_pred cCCCcccccCC---hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSD---SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~---~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++..+.+.. ....+.+...|++.++|+++|||++|+|+++
T Consensus 111 ~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~ 155 (176)
T d1jfua_ 111 EANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155 (176)
T ss_dssp HTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence 88765443322 2333456677889999999999999999875
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=1.8e-20 Score=148.14 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=96.7
Q ss_pred hcCccCCcee-c--cCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-----CHHH
Q 018808 15 LSSSARDFLI-R--SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-----DDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~-~--~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-----~~~~ 85 (350)
+|+++|+|++ + .+|+.++++.+.|| ++|+||++||++|..++|.|.++++++++ ++.+++|+.+. +.+.
T Consensus 3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~ 80 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGK 80 (143)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHH
T ss_pred CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhh
Confidence 5899999986 3 48999999999999 99999999999999999999999999986 37888888643 4556
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++++.+.+++...-+.|. ...+.+.|++.++|+++++|++|++++.
T Consensus 81 ~~~~~~~~~~~~p~~~D~--~~~~~~~~~v~~~P~~~~id~~G~i~~~ 126 (143)
T d2b5xa1 81 IKETAAEHDITQPIFVDS--DHALTDAFENEYVPAYYVFDKTGQLRHF 126 (143)
T ss_dssp HHHHHHHTTCCSCEEECS--SCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred hhhHHHhhccCccccccC--ccchHHHcCCCcCCEEEEECCCCEEEEE
Confidence 788888887643333333 3489999999999999999999999875
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=3.9e-20 Score=148.31 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=102.2
Q ss_pred ccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 177 HSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 177 ~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
.||+| ++ +.+|+.++|++++||+|||+|| +.|||.|..+++.+++.++++.+.| +++++||.| +....++|.
T Consensus 2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d-~~~~~~~~~ 78 (158)
T d1zyea1 2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVD-SHFSHLAWI 78 (158)
T ss_dssp BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHHHHHHH
T ss_pred CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCc-CHHHHHHHH
Confidence 68999 43 5577899999999999999999 8899999999999999999999998 999999999 556666676
Q ss_pred cCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 252 GSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 252 ~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
+.. ..++||++.|...++.+.||+. +.|++||||++|+|++....
T Consensus 79 ~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~ 135 (158)
T d1zyea1 79 NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVN 135 (158)
T ss_dssp TSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred hhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEe
Confidence 643 4588999999999999999984 47799999999999988765
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.80 E-value=3e-20 Score=147.05 Aligned_cols=111 Identities=17% Similarity=0.362 Sum_probs=91.4
Q ss_pred ccCCcee-ccCC--------ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 18 SARDFLI-RSNG--------DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 18 ~~p~f~~-~~~g--------~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
+||+|++ +.+| ..+++++++|| ++|+||++||++|+.++|.+.++++++ ++.+++|+.+....+.+
T Consensus 2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~----~~~~~~i~~~~~~~~~~ 77 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK----RFQLVGINYKDAADNAR 77 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT----TSEEEEEEESCCHHHHH
T ss_pred CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc----CceeEEEEeeechHHHH
Confidence 6777766 3333 67899999999 999999999999999999998876654 47899999999988999
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++...+++..+.+. .+....+.+.|++.++|+++++|++|+++++
T Consensus 78 ~~~~~~~~~~~~~~-~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 122 (144)
T d1knga_ 78 RFLGRYGNPFGRVG-VDANGRASIEWGVYGVPETFVVGREGTIVYK 122 (144)
T ss_dssp HHHHHHCCCCSEEE-EETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred HHHHHcCCcccccc-ccccchhhhhcCccccceEEEEcCCCeEEEE
Confidence 99888766555432 2334589999999999999999999999985
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.7e-20 Score=149.06 Aligned_cols=119 Identities=17% Similarity=0.211 Sum_probs=102.1
Q ss_pred hcccccCCc-eecCCCceeecccc--CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDL--EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~--~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
.+|.++|+| +.+.+|+.++++++ ++++|+++|| ++|||+|..+++.+++.+.++++. +.+++|+.| +.+..+
T Consensus 6 ~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~ 81 (156)
T d2a4va1 6 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQK 81 (156)
T ss_dssp CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHH
T ss_pred CCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHH
Confidence 379999999 89999999999998 5678888888 889999999999999999999754 678999988 778888
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCCCCcc-----EEEEECCCCCEEeccch
Q 018808 249 RDLGSMPWLALPFKDKSREKLARYFELSTLP-----TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P-----~~~lid~~G~i~~~~~~ 296 (350)
+|.+++. ++||++.|.+.++++.||+...| ..++|+.+|+++.++.+
T Consensus 82 ~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~ 133 (156)
T d2a4va1 82 KFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVK 133 (156)
T ss_dssp HHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEES
T ss_pred hhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEE
Confidence 8888776 78999999999999999986555 24455589999998765
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.1e-19 Score=146.64 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=98.6
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.+||+| +.+.+|+.++|++++||++||+|| +.|||+|..+++.|++++.++. + +++++|+.| ++...+++
T Consensus 19 ~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d-~~~~~~~~ 93 (164)
T d1qxha_ 19 QAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--N--TVVLCISAD-LPFAQSRF 93 (164)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--T--EEEEEEESS-CHHHHTTC
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--c--ceeeeEEcC-CHHHHHHH
Confidence 478999999 889999999999999999999888 6699999999999999887664 3 999999998 66677777
Q ss_pred hcCCCCccccC--CchhHHHHHHHcCCC---------CccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPF--KDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~--~~~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~ 297 (350)
...+. +.++. ..+.+.++.+.||+. ..|++||||++|+|++++...
T Consensus 94 ~~~~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~ 150 (164)
T d1qxha_ 94 CGAEG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVD 150 (164)
T ss_dssp CSSTT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred HHHhC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence 76654 44443 356678899999973 247899999999999987654
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.79 E-value=7.3e-20 Score=144.58 Aligned_cols=109 Identities=15% Similarity=0.286 Sum_probs=92.7
Q ss_pred ee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-----CHHHHHhHHhcCCC
Q 018808 23 LI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-----DDEAFKGYFSKMPW 95 (350)
Q Consensus 23 ~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-----~~~~~~~~~~~~~~ 95 (350)
++ +.+|+.+++.+++|| ++|+||++||++|+.++|.|.+++++++..+ +.+++|+.+. ......++....++
T Consensus 7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (143)
T d2fy6a1 7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS-ANLITVASPGFLHEKKDGDFQKWYAGLNY 85 (143)
T ss_dssp TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT-SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC-cEEEEEeeeecccccchhhhhhhhhhcCC
Confidence 55 579999999999999 9999999999999999999999999998774 8899998642 34566777777777
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+++. .|....+++.|++.++|+++++|++|+++++
T Consensus 86 ~~~~~~-~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 122 (143)
T d2fy6a1 86 PKLPVV-TDNGGTIAQSLNISVYPSWALIGKDGDVQRI 122 (143)
T ss_dssp TTSCEE-ECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred cccccc-cccchHHHHHcCCCccCEEEEECCCCEEEEE
Confidence 777654 2344589999999999999999999999875
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=1.7e-19 Score=147.53 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=103.2
Q ss_pred hcccccCCc-eec-CCC--ceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDF-VIS-SDG--RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~-~~g--~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
++|.++|+| +.. .+| +.+++++++||++||+|| +.|||.|..+++.+++.++++.+.+ +++++||.| +.+..
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~D-s~~sh 78 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTD-THFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEecccc-CHHHH
Confidence 689999999 443 344 578999999999999999 7789999999999999999999988 999999998 55555
Q ss_pred HHhhcCC---CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSM---PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|.+.. ..++||++.|.++++++.||+. ..|++||||++|+|++.....
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~ 137 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTA 137 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecC
Confidence 5555543 3588999999999999999983 478999999999999887553
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.5e-19 Score=147.13 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=106.6
Q ss_pred hhcccccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 172 SVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 172 ~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
..+|.+||+| +. +.+|+.++|++++||++||+|| +.||+.|..++..+++.+++|.+.| ++|++||.| +...
T Consensus 5 ~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D-~~~~ 81 (197)
T d1qmva_ 5 ARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVD-SQFT 81 (197)
T ss_dssp BCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESS-CHHH
T ss_pred CcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecC-CHHH
Confidence 4689999999 43 6688899999999999999999 8899999999999999999999998 999999999 4445
Q ss_pred HHHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
..++.... ..++||++.|..+++++.||+. ..|++|+||++|+|++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~ 144 (197)
T d1qmva_ 82 HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVND 144 (197)
T ss_dssp HHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecC
Confidence 56665543 3588999999999999999984 478999999999999876553
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=6.3e-19 Score=143.54 Aligned_cols=127 Identities=21% Similarity=0.366 Sum_probs=100.0
Q ss_pred hhhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCCCcEEEEEEeCC---CCH
Q 018808 170 LRSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DEE 244 (350)
Q Consensus 170 ~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d---~~~ 244 (350)
++..++.++|+| +.+.+|+.+++++++||++||+||++||| .|..+++.|.++++++.+.+.++.+++|++| +++
T Consensus 3 ~~~p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp 82 (172)
T d1xzoa1 3 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP 82 (172)
T ss_dssp CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred ccCCCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchH
Confidence 455677889999 89999999999999999999999999997 7999999999999999877777999999997 578
Q ss_pred HHHHHhhcCCCC--ccccCCchh-----HHHHHHHcCC-----------CCccEEEEECCCCCEEeccch
Q 018808 245 ESFKRDLGSMPW--LALPFKDKS-----REKLARYFEL-----------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 245 ~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.+++|...++. ..+.++.+. .....+.|++ ...|.++|||++|+|+..+.|
T Consensus 83 ~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g 152 (172)
T d1xzoa1 83 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNG 152 (172)
T ss_dssp HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEES
T ss_pred HHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcC
Confidence 888999886641 122222221 1223344543 234789999999999987766
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.78 E-value=6.2e-19 Score=149.07 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=101.7
Q ss_pred hcccccCCc-eecCCCceeecccc---CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--CHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDL---EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--EEE 245 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~---~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~--~~~ 245 (350)
++|.++|+| +.+.+|+ +++.++ +||++||+|| +.|||.|..+++.+++.+++|+++| +++++||+|+ +..
T Consensus 2 lIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~sh~ 78 (237)
T d2zcta1 2 LIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHI 78 (237)
T ss_dssp CTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHH
T ss_pred CCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHHHH
Confidence 479999999 7788885 666654 7999888888 9999999999999999999999998 9999999995 334
Q ss_pred HHHHhhcC--CCCccccCCchhHHHHHHHcCC-------CCccEEEEECCCCCEEeccch
Q 018808 246 SFKRDLGS--MPWLALPFKDKSREKLARYFEL-------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v-------~~~P~~~lid~~G~i~~~~~~ 296 (350)
.|.+.... ..+++||++.|.+.++++.||+ ...|++||||++|+|++....
T Consensus 79 ~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~ 138 (237)
T d2zcta1 79 KWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYY 138 (237)
T ss_dssp HHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEEC
T ss_pred HHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEe
Confidence 45444432 2458899999999999999998 468999999999999887654
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=5.2e-19 Score=138.35 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=87.2
Q ss_pred eccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 24 IRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 24 ~~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
++.+|+.++++++ +|| ++|+||++||++|+.++|.|.+++++ .+.+++++.+.+......+....++..+.+.
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSL 79 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEE
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh-----hhhhcccccccchhhhHHHHHHcCCccceee
Confidence 3567999999998 899 99999999999999999999887653 3789999999888888888887766555432
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+.+..+.+.|++.++|+++++|++|+++++
T Consensus 80 -~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 110 (136)
T d1z5ye1 80 -FDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 110 (136)
T ss_dssp -EESSCHHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred -cccchhHHHhcccCCcceEEEEcCCCEEEEE
Confidence 2334578999999999999999999999875
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=1.9e-18 Score=137.85 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=95.2
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc--EEE-EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK--IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
+|+++|+|++ +.+|++++|++++|+ +++ +||++|||.|..+++.|.++++++..++ +++++|+.| +.+..++|.
T Consensus 4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~-~~vi~vs~d-~~~~~~~~~ 81 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD-SAALAISVG-PPPTHKIWA 81 (153)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS-EEEEEEESC-CHHHHHHHH
T ss_pred CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc-cccccccch-hhhHHHHHh
Confidence 5999999988 689999999999996 444 4568999999999999999999998875 999999986 466778888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+..+.......+.+....+++.|++. ..|+++|||++|+|++.
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~ 130 (153)
T d1xvwa1 82 TQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA 130 (153)
T ss_dssp HHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred hhhccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEE
Confidence 87765544444444456899999974 34579999999999874
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=1.2e-18 Score=140.90 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=89.4
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.++|++++||++||+||. .|||.|..+++.|++.+ .+.| +++++|+.| +....+++
T Consensus 18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~---~~~g--~~vv~Is~d-~~~~~~~~ 91 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERA---AASG--ATVLCVSKD-LPFAQKRF 91 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHH---HHTT--CEEEEEESS-CHHHHTTC
T ss_pred CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhc---cccc--ccccccccc-hHHHHHHH
Confidence 578999999 8899999999999999999999994 58889999988776554 4455 889999998 55666677
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCC---------CccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~ 297 (350)
...+.........+....+.+.||+. ..|++||||++|+|++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~ 147 (166)
T d1xvqa_ 92 CGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVP 147 (166)
T ss_dssp C------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECS
T ss_pred HHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcC
Confidence 66554322233344556678888763 257899999999999887653
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.75 E-value=5.2e-18 Score=137.30 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=99.7
Q ss_pred ccCCc-ee----cCCCceeeccccCC-CEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 177 HSRDF-VI----SSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 177 ~~p~f-~~----~~~g~~v~l~~~~g-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
+||+| +. +.+++.++|++++| |++||+|| +.|||.|..++..+++.++++.+.| +++++||.| +....++
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D-~~~~~~~ 77 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVD-SKFTHLA 77 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESS-CHHHHHH
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCC-cHHHHHh
Confidence 48999 65 45667899999998 78999998 8899999999999999999999998 999999999 4444455
Q ss_pred hhcCC------CCccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccchh
Q 018808 250 DLGSM------PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 250 ~~~~~------~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.++. ..+.||++.|.+.++.+.||+. ..+++||||++|+|++.....
T Consensus 78 ~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~ 136 (170)
T d2h01a1 78 WKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNN 136 (170)
T ss_dssp HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGG
T ss_pred HhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEec
Confidence 55432 3478899999999999999983 468999999999999887654
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.74 E-value=2.2e-18 Score=138.58 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=93.9
Q ss_pred hcCccCCcee-ccCCceeecCCC--CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSL--KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~--~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
+|++||+|++ +.+|+.++|+++ +|| ++|.|| ++|||+|..+++.+.++++++.+.+ +.+++++.+ +.+..+++
T Consensus 4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d-~~~~~~~~ 81 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN-AEVLAISVD-SPWCLKKF 81 (160)
T ss_dssp TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC-CEEEEEESS-CHHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc-ccccccccc-chhhhhhh
Confidence 5999999988 689999999997 799 888888 8899999999999999999998885 899999876 55666777
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCC----------CCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKV----------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v----------~~~P~~~lid~~G~v~~~ 133 (350)
....+....-..| .+..+++.||+ ...|+++|||++|+|++.
T Consensus 82 ~~~~~~~~~~l~D--~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~ 133 (160)
T d2cx4a1 82 KDENRLAFNLLSD--YNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK 133 (160)
T ss_dssp HHHHTCSSEEEEC--TTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred cccceeeEEEeec--CCcchHHHcCccccccccccccceeeEEEEcCCCEEEEE
Confidence 6665433322333 33489999998 346889999999999985
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3e-18 Score=138.15 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=92.8
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|++||+|++ +.+|+.++|++++|| ++|.|| +.|||.|..+++.|.+++.++. ++.+++|+.| +.+..+++.
T Consensus 19 ~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d-~~~~~~~~~ 94 (164)
T d1qxha_ 19 QAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISAD-LPFAQSRFC 94 (164)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESS-CHHHHTTCC
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcC-CHHHHHHHH
Confidence 36999999988 689999999999999 888887 6799999999999999888764 4899999987 455566776
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC---------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 133 (350)
..++.......+.+...++++.||+. ..|+++|||++|+|++.
T Consensus 95 ~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~ 146 (164)
T d1qxha_ 95 GAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFS 146 (164)
T ss_dssp SSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEE
Confidence 66654433333344556899999973 34789999999999985
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=9.7e-18 Score=135.96 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=92.9
Q ss_pred hcCccCCceec-cCC---------------ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEE
Q 018808 15 LSSSARDFLIR-SNG---------------DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76 (350)
Q Consensus 15 ~g~~~p~f~~~-~~g---------------~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~ 76 (350)
+|+++|+|++. ..| +.+++++++|| ++|+|| ++|||.|..+++.|.+++++|++++ +++++
T Consensus 5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g-~~vv~ 83 (169)
T d2bmxa1 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD-AQILG 83 (169)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT-EEEEE
T ss_pred CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC-cceee
Confidence 49999999884 444 68999999999 999998 8999999999999999999999986 99999
Q ss_pred EECCCCHHHHHhHHhcCC---CcccccCChhhHHHHHhhcCC-----CCcceEEEECCCCeEEec
Q 018808 77 VSGDEDDEAFKGYFSKMP---WLAVPFSDSETRDKLDELFKV-----MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 77 i~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~~ 133 (350)
|+.++.. ..+++.+.+. ...++.. .|.+.++++.||+ ...|+++|||++|+|++.
T Consensus 84 is~d~~~-~~~~~~~~~~~~~~~~f~ll-~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~ 146 (169)
T d2bmxa1 84 VSIDSEF-AHFQWRAQHNDLKTLPFPML-SDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFV 146 (169)
T ss_dssp EESSCHH-HHHHHHHHCTTGGGCCSCEE-ECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred ccccchh-hhhhhcccccccccceEEEE-eccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEE
Confidence 9988643 3334444332 2334433 3455689999998 678999999999999874
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.5e-18 Score=143.28 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=102.4
Q ss_pred hcccccCCc-eecCCCceeeccccCC-CEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--CHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--EEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~g-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~--~~~~~ 247 (350)
.+|.+||+| +.+.+|+ ++|+++.| |++||+|| +.|||.|..++..+++.++++.+.| +++++||+|. +...|
T Consensus 2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~sh~~~ 78 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAW 78 (220)
T ss_dssp CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccchhhh
Confidence 478999999 7788886 99999987 78988888 6799999999999999999999998 9999999995 33444
Q ss_pred HHhhcC------CCCccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGS------MPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+..+. ...++||++.|.+.++++.||+. ..+++||||++|+|++.....
T Consensus 79 ~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~ 146 (220)
T d1prxa_ 79 SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP 146 (220)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECC
T ss_pred hhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEec
Confidence 443321 13488999999999999999984 568999999999999887653
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.73 E-value=3.4e-17 Score=131.92 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=91.6
Q ss_pred hhcCccCCceec-c----CCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLIR-S----NGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~~-~----~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
++|+++|+|++. . ++.+++|++++|| +||+||.. |||.|..+++.|.+++++|.+++ +++++|+.|+ .+..
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g-~~vv~IS~D~-~~~~ 79 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG-VEVYSVSTDT-HFVH 79 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT-EEEEEEESSC-HHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc-eEEEeccccc-HHHH
Confidence 689999999884 2 3457999999999 99999976 99999999999999999999985 9999999985 3444
Q ss_pred HhHHhcCC---CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KGYFSKMP---WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
++|.+... ...++.. .|...++++.||+. ..|+++|||++|+|.+.
T Consensus 80 ~~~~~~~~~~~~~~fpll-~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~ 134 (166)
T d1we0a1 80 KAWHENSPAVGSIEYIMI-GDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (166)
T ss_dssp HHHHHSCHHHHTCCSEEE-ECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhhhhhhhcccccccc-cCcccHHHHHhCCCccccCcccceEEEECCCCcEEEE
Confidence 45544431 1234432 23345899999984 56789999999999874
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.73 E-value=5.1e-18 Score=136.64 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=92.3
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.+++++++||++||.|| +.|||.|..+++.+.+.+.++. + +.+++|+.| +.....++
T Consensus 17 ~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d-~~~~~~~~ 91 (163)
T d1psqa_ 17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--N--TVVLTVSMD-LPFAQKRW 91 (163)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--T--EEEEEEESS-CHHHHHHH
T ss_pred CCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--c--cceEEEEec-cHHHHHHH
Confidence 478999999 899999999999999999999888 6799999999999988877774 3 899999988 44444555
Q ss_pred hcCCCCccccC-CchhHHHHHHHcCCCC------ccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPF-KDKSREKLARYFELST------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~ 297 (350)
.........+. ..+....+.+.||+.. .+++||||++|+|++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~ 145 (163)
T d1psqa_ 92 CGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVD 145 (163)
T ss_dssp HHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECS
T ss_pred HHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcC
Confidence 44332222222 2334567899999742 34789999999999887653
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.72 E-value=1.3e-17 Score=134.29 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=97.2
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+|+.++|++++||+++|+||.. |||.|..+++.|++.+++++ + +.+++||.| +.+..+++
T Consensus 17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~--~~vi~iS~d-~~~~~~~~ 91 (164)
T d1q98a_ 17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--N--TIVLCISAD-LPFAQARF 91 (164)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--T--EEEEEEESS-CHHHHTTC
T ss_pred CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--c--ceEEeecCC-cHHHHHHH
Confidence 579999999 88999999999999999999999944 88889999999999999995 3 899999998 66667777
Q ss_pred hcCCCCccccCCc-hhHHHHHHHcCCC---------CccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKD-KSREKLARYFELS---------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~ 297 (350)
...+....++.+. +....+.+.|++. ..|++||||++|+|++++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~ 148 (164)
T d1q98a_ 92 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVE 148 (164)
T ss_dssp TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred HHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECC
Confidence 7766533333333 3356788889862 248999999999999987653
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.71 E-value=3e-17 Score=132.69 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=90.6
Q ss_pred hhcCccCCcee-----ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLI-----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~-----~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
-+|++||+|++ +.+|++++|++++|| +||+|| ++||+.|..+++.|.+++++|.+++ +.+++|+.|+.. ..
T Consensus 4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~-~~v~~is~d~~~-~~ 81 (167)
T d1e2ya_ 4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN-TEVISCSCDSEY-SH 81 (167)
T ss_dssp CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT-EEEEEEESSCHH-HH
T ss_pred cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc-eEEEeecCCcHH-hH
Confidence 36999999973 458999999999999 999998 9999999999999999999999886 999999987543 33
Q ss_pred HhHHhcCC-----C-cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KGYFSKMP-----W-LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~-----~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
.++..... + ..++.. .+....+.+.|++. ..|+++|||++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l-~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~ 139 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPML-ADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQI 139 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEE-ECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHhhHHHhccccccccccc-ccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEE
Confidence 33333221 1 122211 33445889999883 46789999999999774
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.68 E-value=1.6e-16 Score=128.51 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=90.8
Q ss_pred hhcCccCCceec-cCC-----ceeecCCCCCc--EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH
Q 018808 14 LLSSSARDFLIR-SNG-----DQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g-----~~~~l~~~~gk--~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~ 84 (350)
.+|++||+|+++ .+| +.++|+++.|| ++|+|| +.|||.|..+++.|++.++++++.+ +++++|+.|+...
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g-~~Vvgis~d~~~~ 80 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG-FNVIGVSIDSEQV 80 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT-EEEEEEESSCHHH
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC-eeEecccccchhh
Confidence 479999999984 555 47999999997 888999 8999999999999999999999886 9999999876532
Q ss_pred HHHhHHhcC------CCcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKM------PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
-++|.+.. ....++.. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~l-~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~ 138 (170)
T d1zofa1 81 -HFAWKNTPVEKGGIGQVSFPMV-ADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA 138 (170)
T ss_dssp -HHHHHTSCGGGTCCCCCSSCEE-ECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred -HHHHHhhhhhcccccCcccccc-cccccHHHHHcCCCccccceeEEEEEEcCCCeEEEE
Confidence 23333322 12333322 33445899999984 57889999999999874
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.68 E-value=7.3e-17 Score=132.81 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=92.7
Q ss_pred hhcCccCCcee-----ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLI-----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~-----~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
-.|++||+|++ +.+|++++|++++|| +||+|| ++||+.|..+++.|.+++++|.+.+ +++++|+.|+.. .-
T Consensus 4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g-~~VlgIS~Ds~~-s~ 81 (194)
T d1uula_ 4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG-CEVLACSMDSEY-SH 81 (194)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT-EEEEEEESSCHH-HH
T ss_pred ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc-eEEEEEecCchh-hh
Confidence 35789999984 358889999999999 999999 8999999999999999999999885 999999988543 23
Q ss_pred HhHHhcC------CCcccccCChhhHHHHHhhcCC------CCcceEEEECCCCeEEec
Q 018808 87 KGYFSKM------PWLAVPFSDSETRDKLDELFKV------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~v~~~ 133 (350)
++|.+.+ ....+++. .|...++++.||+ ...|.++|||++|+|.+.
T Consensus 82 ~~~~~~~~~~~~~~~l~fpll-sD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~ 139 (194)
T d1uula_ 82 LAWTSIERKRGGLGQMNIPIL-ADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI 139 (194)
T ss_dssp HHHHHSCGGGTCCCSCSSCEE-ECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hhhhhhhhhhccccCCCccee-eCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEE
Confidence 3444332 22344433 4455689999998 346789999999999874
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.1e-16 Score=127.58 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=87.6
Q ss_pred CCc-eecCC-CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHH
Q 018808 179 RDF-VISSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 249 (350)
Q Consensus 179 p~f-~~~~~-g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~ 249 (350)
-|| +.+.+ |+.++|++++||+|||.+||+||++|.+..+.|++++++|+++| ++|+++++++ +.++..+
T Consensus 4 ydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei~~ 81 (184)
T d2f8aa1 4 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEILN 81 (184)
T ss_dssp GGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHHH
T ss_pred eeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhhhh
Confidence 467 56775 78899999999999999999999999999999999999999999 9999999974 5677777
Q ss_pred hhcC-----CCCccccCCc------hhH----HHHHHHc--------CCCCcc-----------------EEEEECCCCC
Q 018808 250 DLGS-----MPWLALPFKD------KSR----EKLARYF--------ELSTLP-----------------TLVIIGPDGK 289 (350)
Q Consensus 250 ~~~~-----~~~~~~~~~~------~~~----~~~~~~~--------~v~~~P-----------------~~~lid~~G~ 289 (350)
+++. ....+||+.. +.. .-+.+.. ++.+.| +-||||++|+
T Consensus 82 f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~ 161 (184)
T d2f8aa1 82 SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV 161 (184)
T ss_dssp HHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred hhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCC
Confidence 7642 1123444322 111 2223332 223333 7799999999
Q ss_pred EEeccchh
Q 018808 290 TLHSNVAE 297 (350)
Q Consensus 290 i~~~~~~~ 297 (350)
++.++.+.
T Consensus 162 vv~rf~~~ 169 (184)
T d2f8aa1 162 PLRRYSRR 169 (184)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 99988763
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.66 E-value=2.6e-16 Score=126.52 Aligned_cols=123 Identities=16% Similarity=0.110 Sum_probs=91.0
Q ss_pred CCCcCchhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC
Q 018808 6 ANSHDIQSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 6 ~~~~~~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
..++..-. +|++||+|++ +.+|+.++|++++|| ++|.|| +.|||.|..+++.|.+.+.++. ++.+++|+.+..
T Consensus 10 ~l~g~~l~-vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~~ 85 (163)
T d1psqa_ 10 SFTGKQLQ-VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMDLP 85 (163)
T ss_dssp CCSSCCCC-TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESSCH
T ss_pred ecCCCCCC-CCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEeccH
Confidence 33444333 5999999988 789999999999999 888887 6799999999999988777774 488999997744
Q ss_pred HHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
...+++....+...+...+.+....+.+.||+.. .++++|||++|+|++.
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~ 141 (163)
T d1psqa_ 86 -FAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV 141 (163)
T ss_dssp -HHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred -HHHHHHHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEE
Confidence 4445555554433333333333347888898742 2368999999999875
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.66 E-value=8.8e-17 Score=134.09 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=98.4
Q ss_pred hcccccCCc-eecCCC-ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 173 VLTSHSRDF-VISSDG-RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g-~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
.+|.++|+| +.+.++ ..++++++ +||++||+|| +.|||.|..++..+++.++++.+.| +++++||.|. .....
T Consensus 3 ~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds-~~sh~ 79 (219)
T d1xcca_ 3 HLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNS-KESHD 79 (219)
T ss_dssp CTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHH
T ss_pred cCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCcc-HhHHh
Confidence 478999999 554432 36899885 7899999999 7899999999999999999999998 9999999994 33333
Q ss_pred HhhcC------CCCccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccch
Q 018808 249 RDLGS------MPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~~------~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~ 296 (350)
+|.+. ...++||++.|.+.++++.||+. ...++||||++|+|++....
T Consensus 80 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~ 145 (219)
T d1xcca_ 80 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLY 145 (219)
T ss_dssp HHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEE
T ss_pred HHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEe
Confidence 33332 23488999999999999999982 24699999999999877643
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=5.8e-16 Score=125.67 Aligned_cols=119 Identities=23% Similarity=0.362 Sum_probs=90.5
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC-CEEEEEEECC---CCHHHHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d---~~~~~~~ 87 (350)
++.++|+|++ +.+|+++++++++|| ++|+||.+||+ .|...++.|.++++++.+.+ ++.+++|++| ++.+..+
T Consensus 7 ~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~ 86 (172)
T d1xzoa1 7 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLK 86 (172)
T ss_dssp CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH
T ss_pred CCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHH
Confidence 5778999988 789999999999999 99999999997 79999999999999997654 7999999987 4566778
Q ss_pred hHHhcCCCc-----ccccCChhh-HHHHHhhcCC-----------CCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWL-----AVPFSDSET-RDKLDELFKV-----------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~ 133 (350)
+|.+.++.. .+.-.+... .+...+.|++ .+.|.++|||++|+++..
T Consensus 87 ~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (172)
T d1xzoa1 87 KFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 149 (172)
T ss_dssp HHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence 888766432 221112222 2223344543 234689999999999864
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.65 E-value=1.7e-16 Score=127.68 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=92.1
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|++||+|++ +.+|+.++|++++|| ++|+||. .|||.|..+++.|++.+.+++ +..+++|+.|.. +..++|..
T Consensus 18 vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d~~-~~~~~~~~ 93 (164)
T d1q98a_ 18 VGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISADLP-FAQARFCG 93 (164)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESSCH-HHHTTCTT
T ss_pred CCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCCcH-HHHHHHHH
Confidence 6999999988 689999999999999 9998885 588999999999999999995 388999998744 45667777
Q ss_pred cCCCcccccCChhhHHHHHhhcCCC---------CcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 133 (350)
..+...+...+.+....+.+.|++. ..|.++|||++|+|++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~ 144 (164)
T d1q98a_ 94 AEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS 144 (164)
T ss_dssp TTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence 6665444444343345788888862 24789999999999985
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=2.4e-16 Score=125.71 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=89.7
Q ss_pred hcCccCCcee-ccCCceeecCCCCC--c-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKG--K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~g--k-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
+|++||+|++ +.+|+.++|+++.| + ++++|| ++|||.|..+++.|.+.+.+|++. ..+++|+.| +.+..++|
T Consensus 7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~--~~~~~is~d-~~~~~~~f 83 (156)
T d2a4va1 7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY--AAVFGLSAD-SVTSQKKF 83 (156)
T ss_dssp TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT--CEEEEEESC-CHHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc--cceeeeccc-hhhhHHhh
Confidence 6999999988 68999999999954 4 666666 789999999999999999999763 678899976 66778888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCCCcce-----EEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPH-----LVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~-----~~lid~~G~v~~~ 133 (350)
.+.++.. +++. .|...++++.||+...|. .++|+.+|+++++
T Consensus 84 ~~~~~l~-f~~L-~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~ 130 (156)
T d2a4va1 84 QSKQNLP-YHLL-SDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFK 130 (156)
T ss_dssp HHHHTCS-SEEE-ECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEE
T ss_pred hcccCcc-ceec-cchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEE
Confidence 8887754 4443 233458999999866653 4445578998875
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.5e-15 Score=120.05 Aligned_cols=117 Identities=19% Similarity=0.346 Sum_probs=91.4
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCC--CcEEEEEEeCC---CCHHHHHHhhc
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKG--ESFEIVLISLD---DEEESFKRDLG 252 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~--~~~~vv~v~~d---~~~~~~~~~~~ 252 (350)
|| +.|.+|+.+++++++||++||+||++||| .|...++.+.++++++...+ ..+.++.++.+ +..+....+..
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 58 78999999999999999999999999997 79999999999999887654 34666777765 35555555555
Q ss_pred CC--CCccccCCchhHHHHHHHcCCCC---------------ccEEEEECCCCCEEeccch
Q 018808 253 SM--PWLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 253 ~~--~~~~~~~~~~~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~~~ 296 (350)
.. .|..++........+.+.|++.. .++++|||++|+|+..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~ 142 (160)
T d1wp0a1 82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ 142 (160)
T ss_dssp TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEET
T ss_pred hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECC
Confidence 33 45556666666667888888642 3688999999999988744
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.63 E-value=6.4e-16 Score=123.38 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=89.8
Q ss_pred CccCCceec----cCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 17 SSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 17 ~~~p~f~~~----~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
++||+|+++ .+|++++|++++|| +||+|| +.|||.|..+++.|.+++.++.+.+ ..+++|+.|+. ...++|.
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~-~~vigIS~d~~-~~~~~~~ 78 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN-CEVVAVSVDSH-FSHLAWI 78 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT-EEEEEEESSCH-HHHHHHH
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC-ceEEeccCcCH-HHHHHHH
Confidence 479999874 36679999999999 999999 8899999999999999999999885 99999998855 3445555
Q ss_pred hcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 91 SKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+.. ....++.. .|....+++.||+. ..+.++|||++|+|++.
T Consensus 79 ~~~~~~~~~~~~~f~ll-sD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~ 132 (158)
T d1zyea1 79 NTPRKNGGLGHMNIALL-SDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL 132 (158)
T ss_dssp TSCGGGTCCCSCSSEEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hhhHhhccccccccccc-cccccHHHHHHHhccccCCccccEEEEECCCCEEEEE
Confidence 543 23344432 23335899999985 35589999999999874
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=5.1e-16 Score=125.12 Aligned_cols=114 Identities=21% Similarity=0.176 Sum_probs=82.0
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|++||+|++ +.+|+.++|++++|| +||+||. .|||.|..+++.|.+.+++ . .+++++|+.|. ....+++.
T Consensus 18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~-g~~vv~Is~d~-~~~~~~~~ 92 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S-GATVLCVSKDL-PFAQKRFC 92 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T-TCEEEEEESSC-HHHHTTCC
T ss_pred CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc---c-cccccccccch-HHHHHHHH
Confidence 46999999988 689999999999999 9999995 5889999988887665554 4 38899999874 45566666
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC---------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 133 (350)
+.+........ .+.+..+.+.|++. ..|+++|||++|+|++.
T Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~ 143 (166)
T d1xvqa_ 93 GAEGTENVMPA-SAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYT 143 (166)
T ss_dssp ------CEEEE-ECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred HHhCCcccccc-cchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEE
Confidence 66554333222 12234667777763 24689999999999975
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.63 E-value=2e-15 Score=123.11 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=93.6
Q ss_pred hhcCccCCceec--cCCc--eeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR--SNGD--QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~--~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+++|+|++. .+|+ .++|++++|| ++|+|| ..|||.|..+++.|++.+++|.+.+ +++++|+.|+ .+.-+
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~-~~v~gIS~Ds-~~sh~ 79 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG-VDVYSVSTDT-HFTHK 79 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT-EEEEEEESSC-HHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc-EEEEeccccC-HHHHH
Confidence 689999999884 3664 6899999999 999999 7889999999999999999999885 9999999875 44445
Q ss_pred hHHhcCC---CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMP---WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.+... ...++.. .|...++++.||+. ..|.++|||++|+|.+.
T Consensus 80 ~f~~~~~~~~~~~fpll-sD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~ 133 (186)
T d1n8ja_ 80 AWHSSSETIAKIKYAMI-GDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHHHHCTTGGGCCSEEE-ECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhcccccccccccccc-ccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence 5555443 3444433 34556999999984 46789999999999774
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=5.9e-16 Score=116.15 Aligned_cols=79 Identities=20% Similarity=0.401 Sum_probs=69.3
Q ss_pred ccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 192 l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
+.+..||++||+||++||++|+.+.|.++++++++++. +.++.|..|+. .++.+
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~-----------------------~~l~~ 73 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC-----------------------EDIAM 73 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecC-----------------------cchhh
Confidence 34456899999999999999999999999999999865 88898988754 45889
Q ss_pred HcCCCCccEEEEECCCCCEEeccchh
Q 018808 272 YFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+|+|.++||++++ ++|+.+.+..|.
T Consensus 74 ~~~V~~~Pt~~~~-~~G~~v~~~~G~ 98 (111)
T d1xwaa_ 74 EYNISSMPTFVFL-KNGVKVEEFAGA 98 (111)
T ss_dssp HTTCCSSSEEEEE-ETTEEEEEEESC
T ss_pred cCCCccccEEEEE-ECCEEEEEEeCC
Confidence 9999999999999 899999998873
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.60 E-value=4.3e-15 Score=125.25 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=91.6
Q ss_pred hhcCccCCceec-cCCceeecCCC---CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HHH
Q 018808 14 LLSSSARDFLIR-SNGDQVKLDSL---KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l~~~---~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~~ 85 (350)
.+|++||+|++. .+| .+++.++ +|| ++|+|| ++|||.|..+++.|.+++++|++++ +++++|++|+. ...
T Consensus 2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g-~~vigiS~Ds~~sh~~ 79 (237)
T d2zcta1 2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG-VDLIGLSVDSVFSHIK 79 (237)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT-EEEEEEESSCHHHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC-cceeeccCCcHHHHHH
Confidence 479999999995 566 5777764 899 888887 8999999999999999999999986 99999999864 334
Q ss_pred HHhHHhcC--CCcccccCChhhHHHHHhhcCC-------CCcceEEEECCCCeEEec
Q 018808 86 FKGYFSKM--PWLAVPFSDSETRDKLDELFKV-------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~v-------~~~P~~~lid~~G~v~~~ 133 (350)
|.+..+.. ....++.. .|...++++.||+ ...|.++|||++|+|...
T Consensus 80 w~~~~~~~~~~~l~fpll-sD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~ 135 (237)
T d2zcta1 80 WKEWIERHIGVRIPFPII-ADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM 135 (237)
T ss_dssp HHHHHHHHHCCCCCSCEE-ECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred Hhhhhhhhcccccccccc-cCcchHHHHHcCCccccccccceeeeEEECCCCEEEEE
Confidence 44444322 23444433 4455699999998 468999999999998763
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.6e-15 Score=123.66 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=93.6
Q ss_pred hhcCccCCceec----cCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~----~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
-+|++||+|+++ .+|+.++|++++|| ++|+|| ..||+.|..++..|++++++|.+.+ +++++|+.|+.. .-+
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g-~~vigIS~D~~~-~~~ 83 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG-CEVLGVSVDSQF-THL 83 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT-EEEEEEESSCHH-HHH
T ss_pred cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC-cEEEEEecCCHH-HHH
Confidence 479999999773 36778999999999 999998 8999999999999999999999885 999999998643 334
Q ss_pred hHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|.... .-..+|+. .|...++++.||+. ..+.+++||++|+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~fpll-~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~ 140 (197)
T d1qmva_ 84 AWINTPRKEGGLGPLNIPLL-ADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp HHHTSCGGGTCCCSCSSCEE-ECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hhhcchhhhcCcCCCccceE-eccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEE
Confidence 454432 22445533 44556899999984 46789999999999774
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.58 E-value=3.8e-15 Score=110.91 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=66.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+|+|+|+|||+||++|+.+.|.+.++..++..+ +.++.|++|.. .+++++|+|.
T Consensus 19 ~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~V~ 72 (107)
T d1dbya_ 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES-----------------------PNVASEYGIR 72 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHHTCC
T ss_pred CCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccc-----------------------hhHHHHhccc
Confidence 579999999999999999999999999888765 88999988854 4589999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++||++++ ++|+.+.+..|.
T Consensus 73 ~~Pt~~~~-~~G~~v~~~~G~ 92 (107)
T d1dbya_ 73 SIPTIMVF-KGGKKCETIIGA 92 (107)
T ss_dssp SSCEEEEE-SSSSEEEEEESC
T ss_pred ceEEEEEE-ECCeEEEEEeCC
Confidence 99999999 689999998873
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.58 E-value=2.3e-15 Score=111.74 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=67.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++..+++++ +.++.|++|.. ..++++|+|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~V 69 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN-----------------------PETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCC-----------------------cccHHHCCc
Confidence 3589999999999999999999999999999865 89999998865 457899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+.+.+..|.
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~~G~ 90 (105)
T d1nw2a_ 70 MSIPTLILF-KGGEPVKQLIGY 90 (105)
T ss_dssp CBSSEEEEE-ETTEEEEEEESC
T ss_pred ceeeEEEEE-ECCEEEEEEECC
Confidence 999999999 789999998873
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.9e-15 Score=111.06 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=65.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|+||++||++|+.+.|.+.+++.++..+ +.++.+++|.+ ..++++|+|.
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~v~ 73 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-----------------------PGTAPKYGIR 73 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------TTHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccch-----------------------hhHHHHhCCC
Confidence 589999999999999999999999999888765 88999988754 3488999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++||++++ ++|+.+.+..|
T Consensus 74 ~~PT~~~~-~~G~~v~~~~G 92 (108)
T d2trxa_ 74 GIPTLLLF-KNGEVAATKVG 92 (108)
T ss_dssp SSSEEEEE-ETTEEEEEEES
T ss_pred cEEEEEEE-ECCEEEEEEeC
Confidence 99999999 79999999887
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.56 E-value=6.2e-15 Score=109.11 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=66.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.|.+.++.+++.++ +.++.|+.|.+ .+++++|+|.
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~-----------------------~~l~~~~~V~ 70 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA-----------------------PGIATQYNIR 70 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTCC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccc-----------------------hhhhhhccee
Confidence 478999999999999999999999999998776 78888888865 4589999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++||++++ ++|+.+.+..|.
T Consensus 71 ~~Pt~~~~-~~G~~v~~~~G~ 90 (104)
T d1fb6a_ 71 SIPTVLFF-KNGERKESIIGA 90 (104)
T ss_dssp SSSEEEEE-ETTEEEEEEEEC
T ss_pred eeeEEEEE-EcCeEEEEEeCC
Confidence 99999999 799999998883
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.56 E-value=8.5e-15 Score=109.13 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++..++.+. +.++.|++|.+ .+++++|+|.
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~I~ 73 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN-----------------------PTTVKKYKVE 73 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC-----------------------HHHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceeccccc-----------------------HHHHHHhccc
Confidence 478999999999999999999999999998865 88999998855 4589999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++||++++ ++|+.+.+..|
T Consensus 74 ~~Pt~~~~-~~g~~v~~~~G 92 (108)
T d1thxa_ 74 GVPALRLV-KGEQILDSTEG 92 (108)
T ss_dssp SSSEEEEE-ETTEEEEEEES
T ss_pred CCCEEEEE-ECCEEEEEEeC
Confidence 99999999 58999998887
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7e-15 Score=113.78 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|+|.||++||++|+.+.|.|.++++++++. +.++.|++|.. .+++++|+|
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~-----------------------~~la~~~~I 74 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV-----------------------PDFNKMYEL 74 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeecccc-----------------------chhhhhcCe
Confidence 4689999999999999999999999999999865 89999999865 347899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ .+|+.+....|.
T Consensus 75 ~~~PT~~~f-~~g~~i~~~~g~ 95 (137)
T d1qgva_ 75 YDPCTVMFF-FRNKHIMIDLGT 95 (137)
T ss_dssp CSSCEEEEE-ETTEEEEEECC-
T ss_pred eeEEEEEEE-eCCcEEEEEecC
Confidence 999999999 889888765553
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.54 E-value=7.2e-15 Score=110.24 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+|||+||++|+.+.|.|.++.+++.+ +.++.|++|+. .++++.|||
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~~~~V 77 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNN-----------------------SEIVSKCRV 77 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCccchhhceecccccccccc----ccccccccccc-----------------------hhhHHHccc
Confidence 357899999999999999999999999998852 89999998854 558999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+.+.+..|.
T Consensus 78 ~~~Pt~~~~-~~G~~v~~~~G~ 98 (113)
T d1r26a_ 78 LQLPTFIIA-RSGKMLGHVIGA 98 (113)
T ss_dssp CSSSEEEEE-ETTEEEEEEESS
T ss_pred cCCCEEEEE-ECCEEEEEEeCC
Confidence 999999999 899999998873
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=7.4e-15 Score=111.14 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=60.4
Q ss_pred ccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 192 VSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 192 l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
+++.+||+++|+|||+||++|+.+.|.+ .++.+.+.+ +.++.+.++.+ .+...+
T Consensus 17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~-------------------~~~~~~ 73 (117)
T d2fwha1 17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD----TVLLQANVTAN-------------------DAQDVA 73 (117)
T ss_dssp HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT----SEEEEEECTTC-------------------CHHHHH
T ss_pred HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc----eEEEecccccc-------------------hhHHHH
Confidence 3455789999999999999999999987 444444432 55666655422 234467
Q ss_pred HHHHcCCCCccEEEEECCCCCEEec
Q 018808 269 LARYFELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 269 ~~~~~~v~~~P~~~lid~~G~i~~~ 293 (350)
++++|+|.++|+++++|++|+++..
T Consensus 74 l~~~~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 74 LLKHLNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp HHHHTTCCSSSEEEEECTTSCBCGG
T ss_pred HHhhhehhhceEEEEEeCCCcEEec
Confidence 8999999999999999999998754
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.53 E-value=1.4e-14 Score=108.64 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=66.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|+|+||++||++|+.+.|.+.++.++++++ +.++.|++|.. .+++++|+|
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~v 76 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV-----------------------AAVAEAAGI 76 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT-----------------------HHHHHHHTC
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeecccc-----------------------ccccccccc
Confidence 4689999999999999999999999999999764 88999998854 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++||++++ ++|+.+.+..|
T Consensus 77 ~~~Pt~~~~-~~G~~v~~~~G 96 (112)
T d1ep7a_ 77 TAMPTFHVY-KDGVKADDLVG 96 (112)
T ss_dssp CBSSEEEEE-ETTEEEEEEES
T ss_pred cCCCEEEEE-ECCEEEEEEeC
Confidence 999999999 89999999887
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.52 E-value=3.8e-14 Score=105.36 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=62.9
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcC-CCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
...+++++++||++|||+|+.+.|.+.+++.+.... +..+.++.|+.+.. .+++++
T Consensus 12 ~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~-----------------------~~l~~~ 68 (107)
T d1a8la2 12 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWADQ 68 (107)
T ss_dssp TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHHH
T ss_pred hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc-----------------------cccccc
Confidence 345667888999999999999999999997664432 23477777776533 458999
Q ss_pred cCCCCccEEEEECCCCCEEeccchh
Q 018808 273 FELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|+|.++||++++ ++|+.+.+..|.
T Consensus 69 ~~V~~vPTi~i~-~~G~~~~~~~G~ 92 (107)
T d1a8la2 69 YNVMAVPKIVIQ-VNGEDRVEFEGA 92 (107)
T ss_dssp TTCCSSCEEEEE-ETTEEEEEEESC
T ss_pred cccccceEEEEE-eCCeEEEEEECC
Confidence 999999987655 899999998883
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1e-14 Score=108.02 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|+|+|||+||++|+.+.|.+.++.+++.+ +.++.|+.|++ .+++++|+|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~-----------------------~~~~~~~~V 71 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVASECEV 71 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccC-----------------------HhHHHHcCc
Confidence 468999999999999999999999999988864 56888888755 457899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++||++++ ++|+.+.+..|
T Consensus 72 ~~~Pt~~~~-~~G~~v~~~~G 91 (105)
T d2ifqa1 72 KCMPTFQFF-KKGQKVGEFSG 91 (105)
T ss_dssp CBSSEEEEE-ETTEEEEEEES
T ss_pred eEEEEEEEE-ECCEEEEEEeC
Confidence 999999999 89999999887
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=1.9e-14 Score=108.24 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=64.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++++||+||++||++|+.+.|.+.++.+.+++ +.++.|+.|+. .+++++|+|
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~~~~-----------------------~~l~~~~~V 79 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDEL-----------------------KSVASDWAI 79 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhcccccc----cceeEEEeeec-----------------------eeeccccce
Confidence 368999999999999999999999999988853 78888888754 458899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++||++++ ++|+++.+..|
T Consensus 80 ~~~Pt~~~~-~~G~~v~~~~G 99 (114)
T d1xfla_ 80 QAMPTFMFL-KEGKILDKVVG 99 (114)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred eeeEEEEEE-ECCEEEEEEeC
Confidence 999999999 89999998877
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-14 Score=106.59 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++.+++++ +.++.|++|.. .+++++|+|
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~-----------------------~~l~~~~~v 72 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQC-----------------------QGTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccc-----------------------hhhhhhcCc
Confidence 468899999999999999999999999998863 77888888754 558899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++||++++ ++|+.+.+..|
T Consensus 73 ~~~Pt~~~~-~~G~~v~~~~G 92 (107)
T d1gh2a_ 73 SATPTFQFF-RNKVRIDQYQG 92 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEEES
T ss_pred eeceEEEEE-ECCEEEEEEeC
Confidence 999999999 99999999888
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=5.5e-14 Score=112.77 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=82.3
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCC---CHHHHHHhhc
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEESFKRDLG 252 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~---~~~~~~~~~~ 252 (350)
+|| +.|.+|+.+++++++||++||+||.+||+ .|..+...+..++..+.... ..+.++.++.+. ..+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 589 89999999999999999999999999997 57677677666665554332 236666666652 3444444444
Q ss_pred CC--CCccccCCchhHHHHHHHc----------------CCCCccEEEEECCCCCEEeccchh
Q 018808 253 SM--PWLALPFKDKSREKLARYF----------------ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 253 ~~--~~~~~~~~~~~~~~~~~~~----------------~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.. .|............+.+.+ .+.+.|++||||++|+++.++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~ 149 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRN 149 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTT
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCC
Confidence 22 3344444444444444444 356789999999999999887653
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.52 E-value=1.9e-14 Score=107.72 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=65.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++.+++.+ +.++.|++|.. ..+++++|+|
T Consensus 24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~----------------------~~~l~~~~~V 77 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE----------------------NKTLAKELGI 77 (112)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST----------------------THHHHHHHCC
T ss_pred CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeeccccccc----------------------chhhHhheee
Confidence 347999999999999999999999999999863 77888887632 1568999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|.
T Consensus 78 ~~~Pt~~~~-k~G~~v~~~~G~ 98 (112)
T d1f9ma_ 78 RVVPTFKIL-KENSVVGEVTGA 98 (112)
T ss_dssp SSSSEEEEE-ETTEEEEEEESS
T ss_pred ccCCEEEEE-ECCEEEEEEeCC
Confidence 999999999 899999999883
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.52 E-value=2.4e-14 Score=107.52 Aligned_cols=73 Identities=21% Similarity=0.386 Sum_probs=64.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|||+||++||++|+.+.|.|.++.+++.+ +.++.|++|.. .+++++|+|
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~-----------------------~~l~~~~~I 77 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVDEL-----------------------KAVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTC-----------------------HHHHHHHHC
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCCC----ceEEeeeeecc-----------------------ccccccCee
Confidence 468999999999999999999999999988743 78888888754 458999999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++||++++ ++|+.+.+..|
T Consensus 78 ~~~Pt~~~~-k~G~~v~~~~G 97 (113)
T d1ti3a_ 78 EAMPTFIFL-KDGKLVDKTVG 97 (113)
T ss_dssp SSTTEEEEE-ETTEEEEEEEC
T ss_pred cccceEEEE-ECCEEEEEEcC
Confidence 999999999 79999999887
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.2e-13 Score=115.24 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=90.6
Q ss_pred hhcCccCCceec-cCCceeecCCCCC-c-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HHHHH
Q 018808 14 LLSSSARDFLIR-SNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l~~~~g-k-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~~~~ 87 (350)
.+|++||+|++. .+| +++|+++.| | +||+|| +.|||.|..++..|++.+++|.+.+ +++++|++|+. ...|.
T Consensus 2 ~VGd~APdF~l~~~~G-~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g-~~v~giS~Ds~~sh~~~~ 79 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN-VKLIALSIDSVEDHLAWS 79 (220)
T ss_dssp CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHH
T ss_pred CCCCCCCCcEeecCCC-CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc-ceeeccccccccchhhhh
Confidence 369999999995 566 599999988 5 888888 5799999999999999999999986 99999999864 33444
Q ss_pred hHHhcC------CCcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM------PWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
+..... .-..+|.. .|...++++.||+. ..+.++|||++|+|.+.
T Consensus 80 ~~~~~~~~~~~~~~l~fpll-sD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~ 142 (220)
T d1prxa_ 80 KDINAYNSEEPTEKLPFPII-DDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS 142 (220)
T ss_dssp HHHHHHTTSCCCSCCSSCEE-ECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred hhhhhccccccccCcccccc-cCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEE
Confidence 443321 12344432 44556999999984 45789999999999774
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-14 Score=110.23 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=63.4
Q ss_pred cccCCCEEEEEEecc-------CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchh
Q 018808 193 SDLEGKTIGLYFSMS-------SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 265 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~-------~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
++.+||+|+|+|||+ ||++|+.+.|.+.++++.++++ +.++.|++++..+ ..|.
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~----------------~~d~ 77 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY----------------WKDP 77 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH----------------HHCT
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc----------------cchh
Confidence 345789999999995 9999999999999998888754 9999999874322 1122
Q ss_pred HHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 266 REKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 266 ~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
...++++|+|.++||+++++..++++
T Consensus 78 ~~~l~~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 78 NNDFRKNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp TCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred hhhHHHhCCeEEEEEEEEEECCeEEe
Confidence 35688999999999999996555554
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=7.4e-15 Score=112.97 Aligned_cols=75 Identities=9% Similarity=0.145 Sum_probs=65.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++|++.||++|||+|+.+.|.|.++.+++.++. +.+..|++|. ..+++++|+|
T Consensus 35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~--~~~a~Vd~d~-----------------------~~~la~~~~V 89 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQ-----------------------SEAIGDRFGV 89 (132)
T ss_dssp SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC--EEEEEECHHH-----------------------HHHHHHHHTC
T ss_pred CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc--ceeEEEEecC-----------------------CHHHHHhhcc
Confidence 34689999999999999999999999999998765 7777776552 3679999999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++||++++ ++|+.+.+..|
T Consensus 90 ~~~PT~~~~-~~G~~v~~~~G 109 (132)
T d2hfda1 90 FRFPATLVF-TGGNYRGVLNG 109 (132)
T ss_dssp CSCCEEEEE-ETTEEEEEECC
T ss_pred CcceeEEEE-EcCcEeeeecC
Confidence 999999999 99999999888
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.5e-13 Score=110.21 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=64.5
Q ss_pred ccCCcee-cc-CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHHHHH
Q 018808 18 SARDFLI-RS-NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEAFK 87 (350)
Q Consensus 18 ~~p~f~~-~~-~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~~~~ 87 (350)
+..+|++ ++ +|++++|++++|| ++|.|||+||+.|.+..+.|++|+++|++++ ++++++++++ +.++++
T Consensus 2 siydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g-~~Il~fP~nqF~~qE~~~~~ei~ 80 (184)
T d2f8aa1 2 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG-LVVLGFPCNQFGHQENAKNEEIL 80 (184)
T ss_dssp CGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTTTCSCHHHHH
T ss_pred ceeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc-eeEEEeeccccccccccchhhhh
Confidence 4678988 55 5789999999999 9999999999999999999999999999986 9999999864 466788
Q ss_pred hHHh
Q 018808 88 GYFS 91 (350)
Q Consensus 88 ~~~~ 91 (350)
++++
T Consensus 81 ~f~~ 84 (184)
T d2f8aa1 81 NSLK 84 (184)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8876
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.46 E-value=7.5e-14 Score=104.39 Aligned_cols=74 Identities=31% Similarity=0.652 Sum_probs=64.8
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
+++..|| ++|+||++||++|+.+.|.+.++++++++ .+.++.|+++... .+++
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~------------------------~l~~ 73 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECE------------------------DIAM 73 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCH------------------------HHHH
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCc------------------------chhh
Confidence 4455789 99999999999999999999999999976 4888889887664 6889
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.|+|.++|+++++ ++|+.+.+
T Consensus 74 ~~~V~~~Pt~~~~-~~G~~v~~ 94 (111)
T d1xwaa_ 74 EYNISSMPTFVFL-KNGVKVEE 94 (111)
T ss_dssp HTTCCSSSEEEEE-ETTEEEEE
T ss_pred cCCCccccEEEEE-ECCEEEEE
Confidence 9999999999999 79988774
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.46 E-value=7.3e-14 Score=102.98 Aligned_cols=72 Identities=10% Similarity=0.229 Sum_probs=63.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++++ ..++.+++|.. .+++++|+|.
T Consensus 18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~-----------------------~~~~~~~~V~ 70 (103)
T d1syra_ 18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEV-----------------------SEVTEKENIT 70 (103)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTT-----------------------HHHHHHTTCC
T ss_pred CCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccC-----------------------cceeeeeeee
Confidence 57899999999999999999999999999864 66888888754 4588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++||++++ ++|+.+.+..|
T Consensus 71 ~~Pt~i~~-k~G~~v~~~~G 89 (103)
T d1syra_ 71 SMPTFKVY-KNGSSVDTLLG 89 (103)
T ss_dssp SSSEEEEE-ETTEEEEEEES
T ss_pred cceEEEEE-ECCEEEEEEeC
Confidence 99999999 89999999887
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.46 E-value=2.7e-14 Score=107.86 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..++|++.||++|||+|+.+.|.|.++.+++.+.. +.++.|+.| ...+++++|||
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~--~~~~~Vd~d-----------------------~~~~l~~~~~V 83 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADLE-----------------------QSEAIGDRFNV 83 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC--CEEEEECHH-----------------------HHHHHHHTTTC
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc--eEEEEEECC-----------------------CCHHHHHhcCc
Confidence 45689999999999999999999999999997644 777777554 23679999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+.+.+..|.
T Consensus 84 ~~~Pt~~~~-~~G~~v~~~~G~ 104 (119)
T d2es7a1 84 RRFPATLVF-TDGKLRGALSGI 104 (119)
T ss_dssp CSSSEEEEE-SCC----CEESC
T ss_pred CcceEEEEE-EcCeEEEEeeCC
Confidence 999999999 899999999883
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.45 E-value=1.5e-13 Score=110.58 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=86.5
Q ss_pred ccCCceec-----cCCceeecCCCCC-c-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 18 SARDFLIR-----SNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 18 ~~p~f~~~-----~~g~~~~l~~~~g-k-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
+||+|.+. .+++.++|++++| | +||+|| +.|||.|..++..|++.+++|.+.+ +.+++|+.|+.. .-++|
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g-~~vigIS~D~~~-~~~~~ 78 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN-VELLGCSVDSKF-THLAW 78 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT-EEEEEEESSCHH-HHHHH
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC-eeEecccCCcHH-HHHhH
Confidence 58999884 3556899999998 5 889898 7999999999999999999999986 999999988543 33444
Q ss_pred HhcC------CCcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 90 FSKM------PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~------~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
.... .-..++.. .|....+++.||+. ..+.++|||++|+|.+.
T Consensus 79 ~~~~~~~~~~~~~~f~ll-sD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~ 132 (170)
T d2h01a1 79 KKTPLSQGGIGNIKHTLI-SDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHL 132 (170)
T ss_dssp HTSCGGGTCCCSCSSEEE-ECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred hhhhhhhccccccCCcee-EcCccHHHHHhCCccccccceeeeEEEcCCCeEEEE
Confidence 4332 11233322 33345899999983 45799999999999874
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.45 E-value=1.2e-13 Score=102.15 Aligned_cols=70 Identities=29% Similarity=0.626 Sum_probs=62.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++++ ++.++.|+++... .+++.|+|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~V 69 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENP------------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCc------------------------ccHHHCCc
Confidence 446 99999999999999999999999999976 4899999988775 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T d1nw2a_ 70 MSIPTLILF-KGGEPVKQ 86 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred ceeeEEEEE-ECCEEEEE
Confidence 999999999 68988764
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.2e-13 Score=99.70 Aligned_cols=69 Identities=32% Similarity=0.648 Sum_probs=60.4
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.++.+++.. ++.++.+++|... .++..|++.
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~v~ 73 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------------GTAPKYGIR 73 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCT------------------------THHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchh------------------------hHHHHhCCC
Confidence 46 99999999999999999999999988865 5888889887664 688999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++||++++ ++|+.+.+
T Consensus 74 ~~PT~~~~-~~G~~v~~ 89 (108)
T d2trxa_ 74 GIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred cEEEEEEE-ECCEEEEE
Confidence 99999999 78988764
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.42 E-value=4.1e-13 Score=99.76 Aligned_cols=69 Identities=30% Similarity=0.645 Sum_probs=61.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++||++|+.+.|.|.++.+++++ .+.++.|++|... .+++.|+|+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~I~ 73 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNP------------------------TTVKKYKVE 73 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCH------------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccH------------------------HHHHHhccc
Confidence 35 99999999999999999999999999876 4889999988765 689999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+.+.+
T Consensus 74 ~~Pt~~~~-~~g~~v~~ 89 (108)
T d1thxa_ 74 GVPALRLV-KGEQILDS 89 (108)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 58987764
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-12 Score=103.81 Aligned_cols=112 Identities=19% Similarity=0.375 Sum_probs=82.2
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC---CEEEEEEECCC---CHHHHHhHHh
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG---DFEVIFVSGDE---DDEAFKGYFS 91 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~---~~~~v~i~~d~---~~~~~~~~~~ 91 (350)
+|++ +.+|+++++++++|| +||+||++||| .|....+.+.++++++...+ .+.++.++.+. ..+....+..
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 5877 789999999999999 99999999997 69999999999999887654 46666666653 3444455544
Q ss_pred cCC--CcccccCChhhHHHHHhhcCCC---------------CcceEEEECCCCeEEec
Q 018808 92 KMP--WLAVPFSDSETRDKLDELFKVM---------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~--~~~~~~~~~~~~~~l~~~~~v~---------------~~P~~~lid~~G~v~~~ 133 (350)
... |..+.. .......+.+.|++. +.++++|||++|+++.+
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~ 139 (160)
T d1wp0a1 82 EFSPKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 139 (160)
T ss_dssp TTCTTCEEEEC-CHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred hcCCCcccccC-chHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence 443 333332 334444677777753 34688999999999875
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=7.8e-14 Score=99.00 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+|+.|++|||+||++|+.+.|.+.++.++++.. +.++.+..|.. .+++++|+|.
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~-----------------------~~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN-----------------------PQKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS-----------------------CCTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---ccccccccccc-----------------------ccccccCCce
Confidence 578999999999999999999999999888755 77888877643 3367899999
Q ss_pred CccEEEEECCCCCEE
Q 018808 277 TLPTLVIIGPDGKTL 291 (350)
Q Consensus 277 ~~P~~~lid~~G~i~ 291 (350)
++||++ ++++|+++
T Consensus 56 ~~Pt~~-i~~~g~~~ 69 (85)
T d1fo5a_ 56 AVPTIV-INGDVEFI 69 (85)
T ss_dssp CSSEEE-ETTEEECC
T ss_pred EeeEEE-EECCcEEE
Confidence 999965 56888643
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.41 E-value=4.9e-13 Score=99.14 Aligned_cols=70 Identities=23% Similarity=0.589 Sum_probs=61.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++.. ++.++.|++|... .+++.|+|
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~V 71 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESP------------------------NVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccch------------------------hHHHHhcc
Confidence 456 99999999999999999999999998876 4788999888664 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
+++|+++++ ++|+.+.+
T Consensus 72 ~~~Pt~~~~-~~G~~v~~ 88 (107)
T d1dbya_ 72 RSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp CSSCEEEEE-SSSSEEEE
T ss_pred cceEEEEEE-ECCeEEEE
Confidence 999999999 58988764
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.40 E-value=4e-13 Score=99.11 Aligned_cols=69 Identities=26% Similarity=0.592 Sum_probs=61.0
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.++.+++..+ +.++.|+++... .++++|+|.
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~--~~~~~v~~d~~~------------------------~l~~~~~V~ 70 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTDEAP------------------------GIATQYNIR 70 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--CEEEEEETTTCH------------------------HHHHHTTCC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc--cceeEEecccch------------------------hhhhhccee
Confidence 45 999999999999999999999999999764 778888888765 689999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++||++++ ++|+.+.+
T Consensus 71 ~~Pt~~~~-~~G~~v~~ 86 (104)
T d1fb6a_ 71 SIPTVLFF-KNGERKES 86 (104)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred eeeEEEEE-EcCeEEEE
Confidence 99999999 78988874
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.40 E-value=4.7e-13 Score=100.04 Aligned_cols=70 Identities=24% Similarity=0.538 Sum_probs=62.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++++ ++.++.|+++... .+++.|++
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~v 76 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVA------------------------AVAEAAGI 76 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTH------------------------HHHHHHTC
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccc------------------------cccccccc
Confidence 567 99999999999999999999999999975 4889999987664 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++||++++ ++|+.+.+
T Consensus 77 ~~~Pt~~~~-~~G~~v~~ 93 (112)
T d1ep7a_ 77 TAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEE
Confidence 999999999 79998874
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.39 E-value=1e-12 Score=109.11 Aligned_cols=117 Identities=13% Similarity=0.223 Sum_probs=89.0
Q ss_pred hcCccCCceec-cC-CceeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH--HHHH
Q 018808 15 LSSSARDFLIR-SN-GDQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD--EAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~~-~~-g~~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~--~~~~ 87 (350)
+|++||+|+++ .+ +..++++++ +|| ++|+|| +.|||.|..++..|++.+.+|.+++ .++++|++|+.. ..|.
T Consensus 4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~-~~vigiS~Ds~~sh~~w~ 82 (219)
T d1xcca_ 4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN-CKLIGFSCNSKESHDKWI 82 (219)
T ss_dssp TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT-EEEEEEESSCHHHHHHHH
T ss_pred CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc-eEEEeecCccHhHHhHHh
Confidence 69999999995 33 347999995 788 999998 6899999999999999999999985 999999998642 2333
Q ss_pred hHHhc---CCCcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 88 GYFSK---MPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
+..+. ..-..||.. .|...++++.||+. ....++|||++|+|.+.
T Consensus 83 ~~~~~~~~~~~l~fpll-sD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~ 142 (219)
T d1xcca_ 83 EDIKYYGKLNKWEIPIV-CDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT 142 (219)
T ss_dssp HHHHHHHTCSCCCCCEE-ECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred hhhHhhcccCCCCcccc-cccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEE
Confidence 33221 123445533 45556999999983 23589999999999763
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.39 E-value=7.4e-13 Score=99.29 Aligned_cols=69 Identities=28% Similarity=0.641 Sum_probs=60.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+.++ ++.++.|+.+... .+++.|+|
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~~~~~------------------------~l~~~~~V 79 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELK------------------------SVASDWAI 79 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSH------------------------HHHHHTTC
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhccccc---ccceeEEEeeece------------------------eeccccce
Confidence 467 9999999999999999999999999886 3788888887664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
+++||++++ .+|+.+.+
T Consensus 80 ~~~Pt~~~~-~~G~~v~~ 96 (114)
T d1xfla_ 80 QAMPTFMFL-KEGKILDK 96 (114)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred eeeEEEEEE-ECCEEEEE
Confidence 999999999 79998874
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.38 E-value=5.7e-13 Score=99.80 Aligned_cols=69 Identities=32% Similarity=0.659 Sum_probs=60.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++. ++.++.++++... .+++.|+|
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~------------------------~l~~~~~I 77 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELK------------------------AVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCH------------------------HHHHHHHC
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCC---CceEEeeeeeccc------------------------cccccCee
Confidence 457 9999999999999999999999999885 4788888887664 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
+++||++++ ++|+.+.+
T Consensus 78 ~~~Pt~~~~-k~G~~v~~ 94 (113)
T d1ti3a_ 78 EAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp SSTTEEEEE-ETTEEEEE
T ss_pred cccceEEEE-ECCEEEEE
Confidence 999999999 69998875
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.38 E-value=3.8e-13 Score=101.10 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=62.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++.++|+||++|||+|+.+.|.|.++..+++.+ +..|.++.... .+....+.++|+|
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~-----------------~~~~~~~~~~~~V 82 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQ-----------------LNDLQAFRSRYGI 82 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGG-----------------HHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeecccc-----------------ccccccccccccc
Confidence 3678999999999999999999999999888643 34455552111 1223568899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|.
T Consensus 83 ~~~PTli~~-~~gk~~~~~~G~ 103 (115)
T d1zmaa1 83 PTVPGFVHI-TDGQINVRCDSS 103 (115)
T ss_dssp CSSCEEEEE-ETTEEEEECCTT
T ss_pred ccccEEEEE-ECCEEEEEEcCC
Confidence 999999999 799999988874
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.38 E-value=7.1e-13 Score=99.13 Aligned_cols=69 Identities=23% Similarity=0.578 Sum_probs=61.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|++|... .+++.|++
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~------------------------~l~~~~~V 77 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNS------------------------EIVSKCRV 77 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccch------------------------hhHHHccc
Confidence 456 9999999999999999999999999985 4889999988764 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 78 ~~~Pt~~~~-~~G~~v~~ 94 (113)
T d1r26a_ 78 LQLPTFIIA-RSGKMLGH 94 (113)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEE
Confidence 999999999 79998874
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.8e-13 Score=103.30 Aligned_cols=79 Identities=25% Similarity=0.467 Sum_probs=60.9
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhH
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 106 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (350)
..+++.+|| ++|+||++||++|+.+.|.+ .++.+.+. ++.++.+.++.+. +..
T Consensus 15 ~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~--------------------~~~ 71 (117)
T d2fwha1 15 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTAND--------------------AQD 71 (117)
T ss_dssp HHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCC--------------------HHH
T ss_pred HHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc---ceEEEecccccch--------------------hHH
Confidence 345566899 99999999999999999987 44444443 3666667665442 234
Q ss_pred HHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 107 DKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
..+++.|++.++|+++++|++|+++.
T Consensus 72 ~~l~~~~~v~~~Pt~~~~~~~G~~~~ 97 (117)
T d2fwha1 72 VALLKHLNVLGLPTILFFDGQGQEHP 97 (117)
T ss_dssp HHHHHHTTCCSSSEEEEECTTSCBCG
T ss_pred HHHHhhhehhhceEEEEEeCCCcEEe
Confidence 57899999999999999999998764
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.6e-13 Score=97.72 Aligned_cols=69 Identities=23% Similarity=0.529 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+.+++ +.++.+++|... .+++.|+|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~d~~~------------------------~~~~~~~V 71 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQ------------------------DVASECEV 71 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhcccccc---ceeeecccccCH------------------------hHHHHcCc
Confidence 457 99999999999999999999999998864 568888887765 68889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
+++||++++ ++|+.+.+
T Consensus 72 ~~~Pt~~~~-~~G~~v~~ 88 (105)
T d2ifqa1 72 KCMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred eEEEEEEEE-ECCEEEEE
Confidence 999999999 79998875
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.5e-13 Score=101.10 Aligned_cols=80 Identities=24% Similarity=0.475 Sum_probs=64.2
Q ss_pred CCCCCc-EEEEEecC-------CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhh
Q 018808 34 DSLKGK-IGLYFSAS-------WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~-------~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
++.+|| ++|+|||+ ||++|+.+.|.+.++++.+++ ++.++.|+++...+. .+.
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~-----------------~d~ 77 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYW-----------------KDP 77 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHH-----------------HCT
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCccc-----------------chh
Confidence 456889 99999996 999999999999999988875 499999998764331 122
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
+..+++.|+|.++||+++++..++++.
T Consensus 78 ~~~l~~~~~V~~iPT~i~~~~g~~l~~ 104 (119)
T d1woua_ 78 NNDFRKNLKVTAVPTLLKYGTPQKLVE 104 (119)
T ss_dssp TCHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred hhhHHHhCCeEEEEEEEEEECCeEEee
Confidence 347889999999999999976556553
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.1e-13 Score=97.51 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=61.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.++++ ++.++.++++..+ .+++.|++
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~------------------------~l~~~~~v 72 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQ------------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccccchhhhccccccc---cccccccccccch------------------------hhhhhcCc
Confidence 467 9999999999999999999999999886 3778888887664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 73 ~~~Pt~~~~-~~G~~v~~ 89 (107)
T d1gh2a_ 73 SATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred eeceEEEEE-ECCEEEEE
Confidence 999999999 89998874
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.9e-12 Score=97.78 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++.++|.||++||++|+.+.|.+.++.+.+.+.. +.++.|++++. .+++++|+|
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~~~-----------------------~~l~~~~~v 80 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN-----------------------QDLCMEHNI 80 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeeccch-----------------------HHHHHHhcc
Confidence 46899999999999999999999999999997655 89999998854 568999999
Q ss_pred CCccEEEEECCCCCEEe
Q 018808 276 STLPTLVIIGPDGKTLH 292 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~ 292 (350)
.++|+++++ ++|+...
T Consensus 81 ~~~Pti~~f-~~g~~~~ 96 (119)
T d2b5ea4 81 PGFPSLKIF-KNSDVNN 96 (119)
T ss_dssp CSSSEEEEE-ETTCTTC
T ss_pred ccCCeEEEE-ECCEEee
Confidence 999999999 7776544
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.33 E-value=1.7e-12 Score=96.93 Aligned_cols=69 Identities=20% Similarity=0.504 Sum_probs=59.7
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
.+ ++|+||++||++|+.+.|.|.++.+++++ +.++.++++... +.+++.|+|.
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---v~~~~vd~~~~~-----------------------~~l~~~~~V~ 78 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQEN-----------------------KTLAKELGIR 78 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTT-----------------------HHHHHHHCCS
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhcccccc---ceeecccccccc-----------------------hhhHhheeec
Confidence 46 99999999999999999999999999863 678888876432 2789999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+.+.+
T Consensus 79 ~~Pt~~~~-k~G~~v~~ 94 (112)
T d1f9ma_ 79 VVPTFKIL-KENSVVGE 94 (112)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 79998874
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.9e-13 Score=101.90 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=60.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|.+||.||++||++|+.+.|.+.++.+.+...+.++.++.|+++.. ..++++|+|
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 79 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-----------------------SDLAQQYGV 79 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC-----------------------CSSHHHHTC
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc-----------------------hhHHHHhCC
Confidence 468999999999999999999999999999987665678888887743 347889999
Q ss_pred CCccEEEEECCCCCEE
Q 018808 276 STLPTLVIIGPDGKTL 291 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~ 291 (350)
.++||++++ ++|+.+
T Consensus 80 ~~~Pt~~~~-~~G~~~ 94 (120)
T d1meka_ 80 RGYPTIKFF-RNGDTA 94 (120)
T ss_dssp CSSSEEEEE-ESSCSS
T ss_pred ccCCeEEEE-ECCeEe
Confidence 999999999 666544
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.33 E-value=4.1e-12 Score=91.95 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=57.5
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+++.+.++.|+++|||+|+.+.|.++++...+. ++.+..|+.+.. .+++++|
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~----~i~~~~vd~~~~-----------------------~~l~~~~ 64 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTF-----------------------QNEITER 64 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTC-----------------------HHHHHHT
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC----ceEEEEEecccc-----------------------hHHHhhc
Confidence 4567788999999999999999999999987653 288998988754 5589999
Q ss_pred CCCCccEEEEECCCCCEEe
Q 018808 274 ELSTLPTLVIIGPDGKTLH 292 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~ 292 (350)
+|.++||+++ +|+.++
T Consensus 65 ~I~~vPt~~~---ng~~~~ 80 (96)
T d1hyua4 65 NVMGVPAVFV---NGKEFG 80 (96)
T ss_dssp TCCSSSEEEE---TTEEEE
T ss_pred ccccccEEEE---CCEEEE
Confidence 9999999765 777764
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.7e-12 Score=100.14 Aligned_cols=69 Identities=10% Similarity=0.280 Sum_probs=61.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.+| ++|+||++||++|+.+.|.|.++.+++++ .+.++.|++|..+ ++++.|+|
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~------------------------~la~~~~I 74 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVP------------------------DFNKMYEL 74 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCC------------------------TTTTSSCS
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccc------------------------hhhhhcCe
Confidence 457 99999999999999999999999999975 4889999998775 58899999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|+++++ .+|+.+.
T Consensus 75 ~~~PT~~~f-~~g~~i~ 90 (137)
T d1qgva_ 75 YDPCTVMFF-FRNKHIM 90 (137)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred eeEEEEEEE-eCCcEEE
Confidence 999999999 7887664
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.32 E-value=5e-13 Score=94.64 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=52.1
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCcc
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 279 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 279 (350)
.+..||++||++|+.+.|.++++.+++.++ +.++.|++|.+ .+++++|||.++|
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~V~~~P 57 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD-----------------------REKAIEYGLMAVP 57 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC-----------------------GGGGGGTCSSCSS
T ss_pred EEEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccc-----------------------hhhHHhcCceEeC
Confidence 355699999999999999999999999765 88998988754 3478999999999
Q ss_pred EEEEECCCCC
Q 018808 280 TLVIIGPDGK 289 (350)
Q Consensus 280 ~~~lid~~G~ 289 (350)
|+++ +.+|+
T Consensus 58 t~~~-~~~~~ 66 (85)
T d1nhoa_ 58 AIAI-NGVVR 66 (85)
T ss_dssp EEEE-TTTEE
T ss_pred EEEE-CCcEE
Confidence 8654 55543
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.31 E-value=3.1e-12 Score=93.99 Aligned_cols=69 Identities=26% Similarity=0.577 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++++ ..++.++++... .+++.|+|
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~---~~~~~vd~d~~~------------------------~~~~~~~V 69 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVS------------------------EVTEKENI 69 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTTH------------------------HHHHHTTC
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhcccc---eEEEeeccccCc------------------------ceeeeeee
Confidence 456 99999999999999999999999999863 668888887664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~i~~-k~G~~v~~ 86 (103)
T d1syra_ 70 TSMPTFKVY-KNGSSVDT 86 (103)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred ecceEEEEE-ECCEEEEE
Confidence 999999999 79998874
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.31 E-value=3.4e-12 Score=94.45 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC--CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ--GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
....++ +++.||++||++|+.+.|.+.+++...... ..+.++.++.+..+ .++
T Consensus 11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~------------------------~l~ 66 (107)
T d1a8la2 11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP------------------------EWA 66 (107)
T ss_dssp TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH------------------------HHH
T ss_pred HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc------------------------ccc
Confidence 445556 777899999999999999999987654322 25777777776543 689
Q ss_pred hhcCCCCcceEEEECCCCeEEec
Q 018808 111 ELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++|+|.++||++++ ++|+.+.+
T Consensus 67 ~~~~V~~vPTi~i~-~~G~~~~~ 88 (107)
T d1a8la2 67 DQYNVMAVPKIVIQ-VNGEDRVE 88 (107)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEEE
T ss_pred cccccccceEEEEE-eCCeEEEE
Confidence 99999999987665 89987764
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=2.8e-11 Score=96.44 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCcee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC--CEEEEEEECCC---CHHHHHhHHh
Q 018808 20 RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFS 91 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~---~~~~~~~~~~ 91 (350)
++|++ +.+|+++++++++|| +||+||.+||+ .|......+..+...+.... .+.++.+..+. ..+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 58988 789999999999999 99999999996 57777767766666654321 45666666543 2333333333
Q ss_pred cCC-CcccccCChhhHHHHHhh----------------cCCCCcceEEEECCCCeEEec
Q 018808 92 KMP-WLAVPFSDSETRDKLDEL----------------FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~l~~~----------------~~v~~~P~~~lid~~G~v~~~ 133 (350)
... .................. |.+.+.|+++|||++|+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~ 145 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 145 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence 322 111112222222233333 345678999999999999975
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.28 E-value=1.8e-12 Score=91.78 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=54.4
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
+| .+++||++||++|+.+.|.+.++.+.++. .+.++.++.+... +++++|+|.
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~------------------------~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENP------------------------QKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSC------------------------CTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccc------------------------cccccCCce
Confidence 46 78899999999999999999999998865 4777888776553 578899999
Q ss_pred CcceEEEECCCCeE
Q 018808 117 GIPHLVILDENGKV 130 (350)
Q Consensus 117 ~~P~~~lid~~G~v 130 (350)
++||+++ +.+|++
T Consensus 56 ~~Pt~~i-~~~g~~ 68 (85)
T d1fo5a_ 56 AVPTIVI-NGDVEF 68 (85)
T ss_dssp CSSEEEE-TTEEEC
T ss_pred EeeEEEE-ECCcEE
Confidence 9999765 567764
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.27 E-value=1.7e-11 Score=91.89 Aligned_cols=74 Identities=16% Similarity=0.404 Sum_probs=58.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.++++.+ +..++++...+ .+..+.+++.|+|
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~----v~~v~~~~~~~------------------~~~~~~~~~~~~V 82 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH----IYFINSEEPSQ------------------LNDLQAFRSRYGI 82 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC----CEEEETTCGGG------------------HHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh----hhhheeecccc------------------ccccccccccccc
Confidence 456 999999999999999999999999988543 44555554322 2333578899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 83 ~~~PTli~~-~~gk~~~~ 99 (115)
T d1zmaa1 83 PTVPGFVHI-TDGQINVR 99 (115)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 68987764
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=7.6e-12 Score=94.42 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=64.1
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.++.+++.----.++ ++|.||++||++|+.+.|.+.++.+.+++. ++.++.|+++...
T Consensus 14 ~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~-~v~~~~vd~~~~~-------------------- 72 (119)
T d2b5ea4 14 KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQ-------------------- 72 (119)
T ss_dssp ECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCH--------------------
T ss_pred EcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhccc-ceeeeeeeccchH--------------------
Confidence 445555432212456 999999999999999999999999999765 4899999988664
Q ss_pred hhHHHHHhhcCCCCcceEEEECCCCeE
Q 018808 104 ETRDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
.++..|+|.++|+++++ ++|+.
T Consensus 73 ----~l~~~~~v~~~Pti~~f-~~g~~ 94 (119)
T d2b5ea4 73 ----DLCMEHNIPGFPSLKIF-KNSDV 94 (119)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTCT
T ss_pred ----HHHHHhccccCCeEEEE-ECCEE
Confidence 79999999999999999 66643
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.24 E-value=1.7e-14 Score=116.10 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=60.7
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
.+.+++++++++.||++|||+|+.++|.|.++++.+++ +.+..|+.|.++ +..
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~----~~~~~i~~d~~~-----------------------~~~ 100 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRAE-----------------------DDL 100 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHHH-----------------------HHT
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC----CcEEEEECccCH-----------------------HHH
Confidence 45677889999999999999999999999999988764 667777665432 234
Q ss_pred HHc---CCCCccEEEEECCCCCEEeccch
Q 018808 271 RYF---ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 271 ~~~---~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.| +...+|.++++|.++....+..+
T Consensus 101 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~ 129 (166)
T d1z6na1 101 RQRLALERIAIPLVLVLDEEFNLLGRFVE 129 (166)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEEEES
T ss_pred HHHHHhccccccceeecCccchhcccccc
Confidence 444 34568888889998888776543
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.24 E-value=1.6e-11 Score=88.73 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
..+.|. .++.|+++|||+|+.+.|.|.++...+. ++.+..++++... +++..
T Consensus 11 k~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~------------------------~l~~~ 63 (96)
T d1hyua4 11 RDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQ------------------------NEITE 63 (96)
T ss_dssp HHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCH------------------------HHHHH
T ss_pred HhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccch------------------------HHHhh
Confidence 346777 8888999999999999999999987653 5899999888775 68899
Q ss_pred cCCCCcceEEEECCCCeEEec
Q 018808 113 FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~ 133 (350)
|+|+++|++++ +|+.++.
T Consensus 64 ~~I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 64 RNVMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp TTCCSSSEEEE---TTEEEEE
T ss_pred cccccccEEEE---CCEEEEe
Confidence 99999999865 7777664
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.23 E-value=8e-12 Score=88.27 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=52.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..||++||++|+.+.|.+.++.+++++ ++.++.++++..+ .++++|+|.++|+
T Consensus 5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~V~~~Pt 58 (85)
T d1nhoa_ 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDR------------------------EKAIEYGLMAVPA 58 (85)
T ss_dssp EEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCG------------------------GGGGGTCSSCSSE
T ss_pred EEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccch------------------------hhHHhcCceEeCE
Confidence 4559999999999999999999999976 4889999887665 5889999999999
Q ss_pred EEEECCCCe
Q 018808 121 LVILDENGK 129 (350)
Q Consensus 121 ~~lid~~G~ 129 (350)
+++ +.+|+
T Consensus 59 ~~~-~~~~~ 66 (85)
T d1nhoa_ 59 IAI-NGVVR 66 (85)
T ss_dssp EEE-TTTEE
T ss_pred EEE-CCcEE
Confidence 765 55554
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.5e-13 Score=102.84 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=54.3
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-H
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-Y 272 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 272 (350)
...||+++|+||++||++|+.+.|.+.+..+..+ ...++.++.|..+...+ ... .
T Consensus 22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~-----------------------~~~~~ 77 (135)
T d1sena_ 22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEEPK-----------------------DEDFS 77 (135)
T ss_dssp HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGSCS-----------------------CGGGC
T ss_pred HHcCCcEEEEEEecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcCHH-----------------------HHHHH
Confidence 3458999999999999999999998876644332 22225555554332110 111 2
Q ss_pred cCCCCccEEEEECCCCCEEeccchh
Q 018808 273 FELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+....+|+++++|++|+++....|.
T Consensus 78 ~~~~~~Pt~~~~d~~G~~~~~~~g~ 102 (135)
T d1sena_ 78 PDGGYIPRILFLDPSGKVHPEIINE 102 (135)
T ss_dssp TTCSCSSEEEEECTTSCBCTTCCCT
T ss_pred hhcccceeEEEECCCCeEEEEecCC
Confidence 2345689999999999999877664
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.22 E-value=1.5e-12 Score=98.14 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=50.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++|.||++|||+|+.+.|.|.++.++|++. ++.++.|++|.. ..+++.|+|+++|
T Consensus 33 vll~f~a~wCp~C~~~~pvl~eL~~~~~~~-~~~~~~Vd~d~~------------------------~~l~~~~~V~~~P 87 (119)
T d2es7a1 33 ILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADLEQS------------------------EAIGDRFNVRRFP 87 (119)
T ss_dssp EEECCCSCC----CCHHHHHHHHHHTCTTS-CCEEEEECHHHH------------------------HHHHHTTTCCSSS
T ss_pred EEEeecCCCCccHHHHHHHHHHHHHhcCCC-ceEEEEEECCCC------------------------HHHHHhcCcCcce
Confidence 888999999999999999999999999764 366777755432 4799999999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|+.+.+
T Consensus 88 t~~~~-~~G~~v~~ 100 (119)
T d2es7a1 88 ATLVF-TDGKLRGA 100 (119)
T ss_dssp EEEEE-SCC----C
T ss_pred EEEEE-EcCeEEEE
Confidence 99999 79988774
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.2e-12 Score=95.06 Aligned_cols=68 Identities=28% Similarity=0.610 Sum_probs=57.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.++ ++|.||++||++|+.+.|.+.++.+.+...+ ++.++.|+++... .++..|+
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~ 78 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES------------------------DLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC------------------------SSHHHHT
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch------------------------hHHHHhC
Confidence 457 9999999999999999999999999997653 5778888877553 5788899
Q ss_pred CCCcceEEEECCCCe
Q 018808 115 VMGIPHLVILDENGK 129 (350)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (350)
+.++|+++++ ++|+
T Consensus 79 i~~~Pt~~~~-~~G~ 92 (120)
T d1meka_ 79 VRGYPTIKFF-RNGD 92 (120)
T ss_dssp CCSSSEEEEE-ESSC
T ss_pred CccCCeEEEE-ECCe
Confidence 9999999988 5554
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2e-11 Score=97.15 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=90.3
Q ss_pred hcccccCCc-ee-cCCCceeecccc-CCCEEEEEEe-ccCCccCh-hhHHHHHHHHHHHhcCCCcEE-EEEEeCCCCHHH
Q 018808 173 VLTSHSRDF-VI-SSDGRKISVSDL-EGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESFE-IVLISLDDEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~-~~~g~~v~l~~~-~gk~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~~~~~-vv~v~~d~~~~~ 246 (350)
.+|..+|+| +. +.+|+.++++++ +||.|||+|| +.|||.|. .+++.+.+.++.+.+.| .. ++.++.| +...
T Consensus 4 kVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g--~~~i~~~s~~-~~~~ 80 (161)
T d1hd2a_ 4 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVN-DAFV 80 (161)
T ss_dssp CTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-CHHH
T ss_pred CCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC--CeEEEEEecC-chhh
Confidence 368999999 65 466899999985 8998888888 67999995 58888999999998887 54 5556666 4444
Q ss_pred HHHhhcCC-CCccccCCchhHHHHHHHcCCCC------------ccEEEEECCCCCEEeccch
Q 018808 247 FKRDLGSM-PWLALPFKDKSREKLARYFELST------------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 247 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~ 296 (350)
..++.... ....++++.|...++++.||+.. .-.+++|+.+|+|++.+.-
T Consensus 81 ~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve 143 (161)
T d1hd2a_ 81 TGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVE 143 (161)
T ss_dssp HHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEEC
T ss_pred hhhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEe
Confidence 45554433 23578889999999999999731 2345666679999887653
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3e-12 Score=98.06 Aligned_cols=70 Identities=11% Similarity=0.212 Sum_probs=59.2
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++|||+|+.+.|.|.++.+++.++. +.++.|++|.+ ..+++.|+|.
T Consensus 36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~-~~~a~Vd~d~~------------------------~~la~~~~V~ 90 (132)
T d2hfda1 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT-WQVAIADLEQS------------------------EAIGDRFGVF 90 (132)
T ss_dssp EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC-EEEEEECHHHH------------------------HHHHHHHTCC
T ss_pred CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc-ceeEEEEecCC------------------------HHHHHhhccC
Confidence 35 8889999999999999999999999998763 66667765433 4899999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+.+.+
T Consensus 91 ~~PT~~~~-~~G~~v~~ 106 (132)
T d2hfda1 91 RFPATLVF-TGGNYRGV 106 (132)
T ss_dssp SCCEEEEE-ETTEEEEE
T ss_pred cceeEEEE-EcCcEeee
Confidence 99999999 89998874
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=8.5e-11 Score=91.64 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=57.5
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
.-++|++||+|+++||++|+.+.... .++.+-+.+. +.++.|+.++. ....++
T Consensus 39 k~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~---------------------e~~~~~ 94 (147)
T d2dlxa1 39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSE---------------------EGQRYI 94 (147)
T ss_dssp HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSH---------------------HHHHHH
T ss_pred HHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccch---------------------hhhhhh
Confidence 34589999999999999999886533 3343334333 77777776632 236688
Q ss_pred HHcCCCCccEEEEECC-CCCEEeccch
Q 018808 271 RYFELSTLPTLVIIGP-DGKTLHSNVA 296 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~-~G~i~~~~~~ 296 (350)
++|++.++|++++||| .|+++....+
T Consensus 95 ~~y~v~~~Pti~~idp~~ge~v~~~~~ 121 (147)
T d2dlxa1 95 QFYKLGDFPYVSILDPRTGQKLVEWHQ 121 (147)
T ss_dssp HHHTCCSSSEEEEECTTTCCCCEEESS
T ss_pred hheecCceeEEEEEeCCCCeEecccCC
Confidence 9999999999999998 4777755433
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=1.6e-11 Score=95.44 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++.|+|.||++||++|+.+.|.+.++++.+++.+..+.++.+..+ ..+++.|+|.
T Consensus 30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~-------------------------~~~~~~~~v~ 84 (140)
T d2b5ea1 30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT-------------------------ENDVRGVVIE 84 (140)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG-------------------------GCCCSSCCCS
T ss_pred CCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc-------------------------chhccccccc
Confidence 578999999999999999999999999999866533444444332 2246789999
Q ss_pred CccEEEEECCCCCEEe
Q 018808 277 TLPTLVIIGPDGKTLH 292 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~ 292 (350)
++|+++++ ++|+...
T Consensus 85 ~~Ptl~~f-~~g~~~~ 99 (140)
T d2b5ea1 85 GYPTIVLY-PGGKKSE 99 (140)
T ss_dssp SSSEEEEE-CCTTSCC
T ss_pred cCCeEEEE-ECCEEcc
Confidence 99999999 6776553
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.11 E-value=2.3e-10 Score=86.46 Aligned_cols=73 Identities=8% Similarity=0.160 Sum_probs=57.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+.|.+||.||++||++|+. |.+.++++++.....++.+..|.+++. ....+.+++++|++
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~------------------~~~~n~~l~~~~~i 77 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDY------------------GELENKALGDRYKV 77 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSS------------------TTCTTHHHHHHTTC
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccc------------------ccccCHHHHHHhhc
Confidence 4689999999999999994 899999998876555688888887631 11123679999998
Q ss_pred --CCccEEEEECCCC
Q 018808 276 --STLPTLVIIGPDG 288 (350)
Q Consensus 276 --~~~P~~~lid~~G 288 (350)
.++||++++..++
T Consensus 78 ~~~~~PTi~~f~~g~ 92 (122)
T d2c0ga2 78 DDKNFPSIFLFKGNA 92 (122)
T ss_dssp CTTSCCEEEEESSSS
T ss_pred ccCCCCcEEEEeCCc
Confidence 5799999995443
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=2.8e-11 Score=93.95 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=57.9
Q ss_pred ccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 25 RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 25 ~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
.++++++.-.-. .++ ++|.||++||++|+.+.|.|.++.+.+++.. .+.++.++. ..
T Consensus 16 ~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--~~------------------ 75 (140)
T d2b5ea1 16 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--TE------------------ 75 (140)
T ss_dssp EECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--GG------------------
T ss_pred EecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--cc------------------
Confidence 456666553222 356 9999999999999999999999999987543 344444433 32
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECCCCeE
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
.++..|+|.++|+++++ ++|+.
T Consensus 76 ------~~~~~~~v~~~Ptl~~f-~~g~~ 97 (140)
T d2b5ea1 76 ------NDVRGVVIEGYPTIVLY-PGGKK 97 (140)
T ss_dssp ------CCCSSCCCSSSSEEEEE-CCTTS
T ss_pred ------hhccccccccCCeEEEE-ECCEE
Confidence 35677999999999999 46653
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.6e-10 Score=90.51 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=81.3
Q ss_pred hcCccCCcee-c-cCCceeecCCC-CCc-EEEEEe-cCCChhh-hhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHh
Q 018808 15 LSSSARDFLI-R-SNGDQVKLDSL-KGK-IGLYFS-ASWCGPC-QRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (350)
Q Consensus 15 ~g~~~p~f~~-~-~~g~~~~l~~~-~gk-~~v~F~-~~~C~~C-~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~ 88 (350)
+|+.+|+|++ + .+|+.++++++ +|| +||+|| ..|||.| ..+.+.+.+.+..+.+++...++.++.++.. ....
T Consensus 5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~-~~~~ 83 (161)
T d1hd2a_ 5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF-VTGE 83 (161)
T ss_dssp TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH-HHHH
T ss_pred CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchh-hhhh
Confidence 6999999988 4 56899999995 788 888887 5799999 4688889998999988864456667766443 3344
Q ss_pred HHhcCCC-cccccCChhhHHHHHhhcCCCC------------cceEEEECCCCeEEec
Q 018808 89 YFSKMPW-LAVPFSDSETRDKLDELFKVMG------------IPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~ 133 (350)
+.+.... ..++.. .|.+.++++.||+.. .-..++|+.+|+|.+.
T Consensus 84 ~~~~~~~~~~~~ll-sD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~ 140 (161)
T d1hd2a_ 84 WGRAHKAEGKVRLL-ADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 140 (161)
T ss_dssp HHHHTTCTTTCEEE-ECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred hhhhcccccccccc-cCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence 4444332 223322 345568999998631 2334555579998774
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=6e-10 Score=84.06 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=59.3
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
.++..+++----+.+ ++|.||++||++|+. |.+.++++.+.+. .++.+..|++++..
T Consensus 6 ~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~------------------- 64 (122)
T d2c0ga2 6 DLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG------------------- 64 (122)
T ss_dssp ECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST-------------------
T ss_pred EcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc-------------------
Confidence 344444432223457 999999999999994 8999999888643 36888888875431
Q ss_pred hhhHHHHHhhcCC--CCcceEEEECCCC
Q 018808 103 SETRDKLDELFKV--MGIPHLVILDENG 128 (350)
Q Consensus 103 ~~~~~~l~~~~~v--~~~P~~~lid~~G 128 (350)
...+..+++.|++ .++||++++.+.+
T Consensus 65 ~~~n~~l~~~~~i~~~~~PTi~~f~~g~ 92 (122)
T d2c0ga2 65 ELENKALGDRYKVDDKNFPSIFLFKGNA 92 (122)
T ss_dssp TCTTHHHHHHTTCCTTSCCEEEEESSSS
T ss_pred cccCHHHHHHhhcccCCCCcEEEEeCCc
Confidence 1233589999988 5799999996443
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.6e-10 Score=86.98 Aligned_cols=76 Identities=25% Similarity=0.469 Sum_probs=50.9
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh-
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE- 111 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 111 (350)
+.-.|| ++|+||++||++|+.+.|.+.+..+..+...++..+.|+.+... .+..
T Consensus 21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~------------------------~~~~~ 76 (135)
T d1sena_ 21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP------------------------KDEDF 76 (135)
T ss_dssp HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC------------------------SCGGG
T ss_pred HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCH------------------------HHHHH
Confidence 345789 99999999999999999998665543332224555555443221 1111
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+....+|+++++|++|+++..
T Consensus 77 ~~~~~~~Pt~~~~d~~G~~~~~ 98 (135)
T d1sena_ 77 SPDGGYIPRILFLDPSGKVHPE 98 (135)
T ss_dssp CTTCSCSSEEEEECTTSCBCTT
T ss_pred HhhcccceeEEEECCCCeEEEE
Confidence 2334568999999999998764
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.99 E-value=6e-11 Score=88.87 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=47.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCC---EEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD---FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~---~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
.++ ++|.||++||++|+++.|.+.++.+.+..... +.+.....+ .++..
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~ 71 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT---------------------------ANDVP 71 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT---------------------------TSCCS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc---------------------------hhhhc
Confidence 456 99999999999999999999999999976531 222222221 23446
Q ss_pred cCCCCcceEEEECCCC
Q 018808 113 FKVMGIPHLVILDENG 128 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G 128 (350)
++|.++|+++++ ++|
T Consensus 72 ~~v~~~Pti~~f-~~g 86 (116)
T d2djja1 72 DEIQGFPTIKLY-PAG 86 (116)
T ss_dssp SCCSSSSEEEEE-CSS
T ss_pred ccccCCCEEEEE-ECC
Confidence 899999999998 444
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.97 E-value=1.1e-09 Score=82.91 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCEEEEEEeccCCcc------ChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 196 EGKTIGLYFSMSSYKA------SAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~------C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
+++.++|.||++||+. |..+.+.+..+++.+...+ +.+..|+++.. .++
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~--v~~a~Vd~~~~-----------------------~~l 81 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD-----------------------AAV 81 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEETTTS-----------------------HHH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC--eEEEEEEeecc-----------------------cch
Confidence 4578999999999984 3344445555555665655 99999998755 558
Q ss_pred HHHcCCCCccEEEEECCCCCEEeccch
Q 018808 270 ARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+++|+|.++||++++ ++|+.+. +.|
T Consensus 82 ~~~~~I~~yPTi~~f-~~g~~~~-y~G 106 (124)
T d1a8ya1 82 AKKLGLTEEDSIYVF-KEDEVIE-YDG 106 (124)
T ss_dssp HHTTTCCSTTCEEEE-ESSSEEE-CCS
T ss_pred hhccccccCCcEEEe-ccCccEE-eeC
Confidence 999999999999999 6788764 444
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.97 E-value=5.5e-10 Score=84.53 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCc-EEEEEecCCChhh------hhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 37 KGK-IGLYFSASWCGPC------QRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C------~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+.+ ++|.||++||++| ..+.+.+..+++.+... .+.+..|+++... .+
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~-~v~~a~Vd~~~~~------------------------~l 81 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDA------------------------AV 81 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGG-TEEEEEEETTTSH------------------------HH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccC-CeEEEEEEeeccc------------------------ch
Confidence 446 9999999999865 33444445555555444 4899999987775 79
Q ss_pred HhhcCCCCcceEEEECCCCeEEec
Q 018808 110 DELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++.|+|.++||++++ .+|+.+..
T Consensus 82 ~~~~~I~~yPTi~~f-~~g~~~~y 104 (124)
T d1a8ya1 82 AKKLGLTEEDSIYVF-KEDEVIEY 104 (124)
T ss_dssp HHTTTCCSTTCEEEE-ESSSEEEC
T ss_pred hhccccccCCcEEEe-ccCccEEe
Confidence 999999999999999 56776643
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.96 E-value=5.6e-10 Score=83.42 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCC--cEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE--SFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+|++||.||++||++|+.+.|.+.++.+.+..... .+.+.....+ .....+
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 72 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT--------------------------ANDVPD 72 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------------TSCCSS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------------hhhhcc
Confidence 357999999999999999999999999999987531 1222222211 123468
Q ss_pred CCCCccEEEEECCCCC
Q 018808 274 ELSTLPTLVIIGPDGK 289 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~ 289 (350)
+|.++||++++ ++|+
T Consensus 73 ~v~~~Pti~~f-~~g~ 87 (116)
T d2djja1 73 EIQGFPTIKLY-PAGA 87 (116)
T ss_dssp CCSSSSEEEEE-CSSC
T ss_pred cccCCCEEEEE-ECCc
Confidence 99999999999 5554
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.93 E-value=8.7e-10 Score=87.50 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=91.1
Q ss_pred hcccccCCc-ee----cCCCceeeccc-cCCCEEEEEEe-ccCCccCh-hhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 173 VLTSHSRDF-VI----SSDGRKISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~----~~~g~~v~l~~-~~gk~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
.+|.++|+| +. +.+++.+++++ ++||.|||+|+ +.|+|.|. ++.+......+.+...| ..+++.|++| +.
T Consensus 5 ~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g-~~~v~~isvd-~~ 82 (162)
T d1tp9a1 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVN-DP 82 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESS-CH
T ss_pred CCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcC-Ccceeeeecc-ch
Confidence 578999999 43 34557899987 58998888887 77999995 56777778778777765 2468888887 56
Q ss_pred HHHHHhhcCCC-CccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccc
Q 018808 245 ESFKRDLGSMP-WLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 295 (350)
....++..... ...++++.|...++.+.||+. ..-.++||| +|+|++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~v 144 (162)
T d1tp9a1 83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANI 144 (162)
T ss_dssp HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEE
T ss_pred hhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEE
Confidence 66666666553 356888899999999999963 134689999 899988764
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.89 E-value=6.8e-10 Score=88.52 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=57.9
Q ss_pred ecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 32 ~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.+++++++ +++.||++|||+|++.+|.|.++++.++ ++.+..|+.|.+. ...
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~---~~~~~~i~~d~~~------------------------~~~ 100 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAE------------------------DDL 100 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHH------------------------HHT
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC---CCcEEEEECccCH------------------------HHH
Confidence 45678899 9999999999999999999999999875 3677777665443 333
Q ss_pred hhc---CCCCcceEEEECCCCeEEec
Q 018808 111 ELF---KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 111 ~~~---~v~~~P~~~lid~~G~v~~~ 133 (350)
+.| +...+|.+++.|.++...+.
T Consensus 101 ~~~~~~~~~~~p~~~~~d~~~~~~~~ 126 (166)
T d1z6na1 101 RQRLALERIAIPLVLVLDEEFNLLGR 126 (166)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred HHHHHhccccccceeecCccchhccc
Confidence 344 44677889999888877654
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.88 E-value=3.5e-09 Score=83.89 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=83.0
Q ss_pred hhcCccCCceec-----cCCceeecCCC-CCc-EEEEEe-cCCChhhh-hhhHHHHHHHHHhccCCCEEEEEEECCCCHH
Q 018808 14 LLSSSARDFLIR-----SNGDQVKLDSL-KGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (350)
Q Consensus 14 ~~g~~~p~f~~~-----~~g~~~~l~~~-~gk-~~v~F~-~~~C~~C~-~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~ 84 (350)
-+|+++|+|++. .++.+++++++ +|| ++|+|| ..++|.|. +..+...+..+.+.+++..+++.|++|+ ..
T Consensus 5 ~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~-~~ 83 (162)
T d1tp9a1 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND-PF 83 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC-HH
T ss_pred CCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccc-hh
Confidence 479999999873 24567999884 899 888877 57999995 6788888888888777656788888864 44
Q ss_pred HHHhHHhcCCCc-ccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWL-AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
..++|....+.. .++.. .|....+++.|++. +.-.++|+| +|+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l-sD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~ 142 (162)
T d1tp9a1 84 VMKAWAKSYPENKHVKFL-ADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA 142 (162)
T ss_dssp HHHHHHHTCTTCSSEEEE-ECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred hhhhhhhhcccccccccc-cchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence 556666655432 23322 34445889999863 224678888 8998874
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.86 E-value=1.9e-09 Score=85.54 Aligned_cols=121 Identities=9% Similarity=0.083 Sum_probs=84.8
Q ss_pred hcccccCCc-eecCCC---ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHH-HHhcCCCcEEEEEEeCCCCHH
Q 018808 173 VLTSHSRDF-VISSDG---RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYE-KLKGKGESFEIVLISLDDEEE 245 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g---~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~-~~~~~~~~~~vv~v~~d~~~~ 245 (350)
+.|..+|+| +....| +.++++++ +||.|||+|+ +.+.|.|..+...+...+. .+...+. -.++.++++ +..
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~-~~vv~~~s~-d~~ 79 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV-DDILVVSVN-DTF 79 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTC-CEEEEEESS-CHH
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcc-cceeeeecC-CHH
Confidence 568899999 554444 57899995 8988777776 7799999998766555433 3333331 245555555 444
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCC-----------CCccEEEEECCCCCEEeccch
Q 018808 246 SFKRDLGSMPWLALPFKDKSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~~ 296 (350)
...++...+....++++.|....+.+.||+ .....++||| +|+|++.+..
T Consensus 80 ~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~ 140 (163)
T d1nm3a2 80 VMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIE 140 (163)
T ss_dssp HHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred HHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEe
Confidence 445555555456788999999999999986 2455789998 9999887764
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=1.1e-09 Score=90.93 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++.+|||.||++||++|+.+.+.|..++.+|+. +.|+.|+.+. ..+...|++
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~----vkF~ki~~~~------------------------~~~~~~~~i 170 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRASN------------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHHH------------------------HTCSTTSCG
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc----ceEEEEcccc------------------------chhHHhCCC
Confidence 356899999999999999999999999988864 8888886642 113457899
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+++.+..|-
T Consensus 171 ~~lPtl~~y-k~G~~v~~~vg~ 191 (217)
T d2trcp_ 171 DVLPTLLVY-KGGELISNFISV 191 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEETTG
T ss_pred CCCCeEEEE-ECCEEEEEEECc
Confidence 999999999 999999998873
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=3.2e-08 Score=76.68 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+.-++| ++|+|+++||+.|+.+.+.. .++.+.+.+ ++.++.++.++.. ...+
T Consensus 38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e----------------------~~~~ 93 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEE----------------------GQRY 93 (147)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHH----------------------HHHH
T ss_pred HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchh----------------------hhhh
Confidence 345678 99999999999999886643 344444443 3677777665432 2478
Q ss_pred HhhcCCCCcceEEEECCC-CeEEe
Q 018808 110 DELFKVMGIPHLVILDEN-GKVLS 132 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~-G~v~~ 132 (350)
++.|++.++|+++++|+. |+++.
T Consensus 94 ~~~y~v~~~Pti~~idp~~ge~v~ 117 (147)
T d2dlxa1 94 IQFYKLGDFPYVSILDPRTGQKLV 117 (147)
T ss_dssp HHHHTCCSSSEEEEECTTTCCCCE
T ss_pred hhheecCceeEEEEEeCCCCeEec
Confidence 899999999999999974 66543
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.55 E-value=7.1e-08 Score=76.18 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=73.3
Q ss_pred hhcCccCCceec-cCC---ceeecCCC-CCc-EEEEEec-CCChhhhhhhHHHH-HHHHHhccCCCEEEEEEECCCCHHH
Q 018808 14 LLSSSARDFLIR-SNG---DQVKLDSL-KGK-IGLYFSA-SWCGPCQRFTPILA-EVYNELSRQGDFEVIFVSGDEDDEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g---~~~~l~~~-~gk-~~v~F~~-~~C~~C~~~~~~l~-~l~~~~~~~~~~~~v~i~~d~~~~~ 85 (350)
+.|+.+|+|++. ..| +.++++++ +|| +||+||- .+.|.|..+...+. +..+.+..++.-.++.+..+ +...
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~-d~~~ 80 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN-DTFV 80 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS-CHHH
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecC-CHHH
Confidence 569999999885 334 47999995 888 7776654 78999987655443 33333333332344555554 3344
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCC-----------CCcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKV-----------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~ 133 (350)
..++.+......++.. .|....+++.|++ .+...++|+| +|+|.+.
T Consensus 81 ~~a~~~~~~~~~~~ll-sD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~ 137 (163)
T d1nm3a2 81 MNAWKEDEKSENISFI-PDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM 137 (163)
T ss_dssp HHHHHHHTTCTTSEEE-ECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred HHHHhhhhccCceeee-ccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence 4555555444444432 3344578888876 2445788997 9998764
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=2.5e-08 Score=71.89 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=45.1
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
-++|+.||++||++|....+.|.++..++. ++++.++.+.+ .++.++|++.
T Consensus 16 ~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-----~~~v~vd~~~~-----------------------~~l~~~y~~~- 66 (100)
T d1wjka_ 16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-----LQEVDITLPEN-----------------------STWYERYKFD- 66 (100)
T ss_dssp CCEEEEEECSSCHHHHHHHHHTSTTSSSSE-----EEEEETTSSTT-----------------------HHHHHHSSSS-
T ss_pred CCEEEEEECCCCCChHHHHHHHHHhhhhcc-----eEEEecccccC-----------------------HHHHHHhccc-
Confidence 468888999999999999988877754443 44444433322 5689999987
Q ss_pred ccEEEEECCCCCEEe
Q 018808 278 LPTLVIIGPDGKTLH 292 (350)
Q Consensus 278 ~P~~~lid~~G~i~~ 292 (350)
+|++++ +|+.+.
T Consensus 67 VPvl~i---dg~~~~ 78 (100)
T d1wjka_ 67 IPVFHL---NGQFLM 78 (100)
T ss_dssp CSEEEE---SSSEEE
T ss_pred CCceee---cCceEE
Confidence 997654 566653
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=1.2e-08 Score=84.61 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=56.0
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
+. |+|.||++||+.|..+.+.|.+|+.+|+ ++.|+.|+.+.. .+...|++.
T Consensus 120 ~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~---~vkF~ki~~~~~-------------------------~~~~~~~i~ 171 (217)
T d2trcp_ 120 VTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNT-------------------------GAGDRFSSD 171 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHHHH-------------------------TCSTTSCGG
T ss_pred CCeEEEEEEcCCCCChhhhhhhHHHHhhhcc---cceEEEEccccc-------------------------hhHHhCCCC
Confidence 44 8999999999999999999999999986 488999875421 133568999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|.++.+
T Consensus 172 ~lPtl~~y-k~G~~v~~ 187 (217)
T d2trcp_ 172 VLPTLLVY-KGGELISN 187 (217)
T ss_dssp GCSEEEEE-ETTEEEEE
T ss_pred CCCeEEEE-ECCEEEEE
Confidence 99999999 89998875
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.36 E-value=2.7e-07 Score=69.03 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=53.7
Q ss_pred cCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChh
Q 018808 26 SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (350)
Q Consensus 26 ~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (350)
++.++++----+++ ++|.|+++||..|.. |.+.++++.+.+..+.-...|.+..- +.+
T Consensus 9 L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~v-------------------d~~ 67 (122)
T d1g7ea_ 9 LDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY-------------------GDK 67 (122)
T ss_dssp CSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCT-------------------TSC
T ss_pred CCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeec-------------------ccc
Confidence 44444432223557 999999999987753 78888888887764444434544221 122
Q ss_pred hHHHHHhhcC--CCCcceEEEECCCCe
Q 018808 105 TRDKLDELFK--VMGIPHLVILDENGK 129 (350)
Q Consensus 105 ~~~~l~~~~~--v~~~P~~~lid~~G~ 129 (350)
.+..++..|+ |.++||++++ ++|.
T Consensus 68 ~n~~l~~~~~~~I~~yPTi~~f-~~G~ 93 (122)
T d1g7ea_ 68 LNMELSEKYKLDKESYPVFYLF-RDGD 93 (122)
T ss_dssp HHHHHHHHHTCSSSSCEEEEEE-ESSC
T ss_pred ccHHHHHhhcccccCCCeEEEE-ecCc
Confidence 3457887765 7799999998 5653
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=2.7e-07 Score=66.30 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=42.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+++.||++||++|....+.|.++...|. .+++.++.+.+ .++.+.|+++ +|
T Consensus 18 ~i~lft~~~C~~C~~a~~~L~~~~~~~~----~~~v~vd~~~~------------------------~~l~~~y~~~-VP 68 (100)
T d1wjka_ 18 VLTLFTKAPCPLCDEAKEVLQPYKDRFI----LQEVDITLPEN------------------------STWYERYKFD-IP 68 (100)
T ss_dssp EEEEEECSSCHHHHHHHHHTSTTSSSSE----EEEEETTSSTT------------------------HHHHHHSSSS-CS
T ss_pred EEEEEECCCCCChHHHHHHHHHhhhhcc----eEEEecccccC------------------------HHHHHHhccc-CC
Confidence 8888999999999999998877755542 44444433333 3788899987 99
Q ss_pred eEEEECCCCeEE
Q 018808 120 HLVILDENGKVL 131 (350)
Q Consensus 120 ~~~lid~~G~v~ 131 (350)
++++ +|+.+
T Consensus 69 vl~i---dg~~~ 77 (100)
T d1wjka_ 69 VFHL---NGQFL 77 (100)
T ss_dssp EEEE---SSSEE
T ss_pred ceee---cCceE
Confidence 7654 45544
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.25 E-value=4.1e-06 Score=62.29 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=50.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC-
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE- 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (350)
+++.+||.|+++||..|.. |.+.++++++.+.. +..+-.|.+.. +..+.+.+++.+|+
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~-~~~~~~V~~~~------------------vd~~~n~~l~~~~~~ 78 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSD-DLLVAEVGISD------------------YGDKLNMELSEKYKL 78 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCS-SEEEEEEESCC------------------TTSCHHHHHHHHHTC
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHH-HHhhhccceee------------------ccccccHHHHHhhcc
Confidence 4689999999999988764 78889999988763 23332343321 11223466887765
Q ss_pred -CCCccEEEEECCCCCE
Q 018808 275 -LSTLPTLVIIGPDGKT 290 (350)
Q Consensus 275 -v~~~P~~~lid~~G~i 290 (350)
|.++||++++ ++|+.
T Consensus 79 ~I~~yPTi~~f-~~G~~ 94 (122)
T d1g7ea_ 79 DKESYPVFYLF-RDGDF 94 (122)
T ss_dssp SSSSCEEEEEE-ESSCC
T ss_pred cccCCCeEEEE-ecCcc
Confidence 6799999999 67743
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=2.3e-05 Score=60.76 Aligned_cols=92 Identities=10% Similarity=0.170 Sum_probs=56.8
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC--CC--CH---------------HHHHHhhcC
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL--DD--EE---------------ESFKRDLGS 253 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~--d~--~~---------------~~~~~~~~~ 253 (350)
..-.+|.+++.|....||+|+++.+.+.++.+ .+ +.++.+.. .. +. ..+......
T Consensus 22 g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (156)
T d1eeja1 22 KAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAG 95 (156)
T ss_dssp CCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred cCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhc
Confidence 33356889999999999999999999888743 23 55554443 11 11 111111111
Q ss_pred C--CCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEe
Q 018808 254 M--PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLH 292 (350)
Q Consensus 254 ~--~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~ 292 (350)
. ...........+.++++.+||+++|++|+ .||+++.
T Consensus 96 ~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v~ 134 (156)
T d1eeja1 96 KSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLVP 134 (156)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEEE
T ss_pred cccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEec
Confidence 1 11222233455678999999999999665 5687763
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=8.5e-05 Score=58.23 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=64.2
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC---CCHHH-------------HHhH
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---EDDEA-------------FKGY 89 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d---~~~~~-------------~~~~ 89 (350)
.+..+....-..+ +++.|+.+.||+|+++.+.+.++.++ +++.++.+.+. .+... +.++
T Consensus 25 ~~~~i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~----~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~ 100 (169)
T d1v58a1 25 QSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQ 100 (169)
T ss_dssp TSCCEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHH
T ss_pred cCCCceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc----cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHH
Confidence 4455555556667 89999999999999999998877654 35777777542 22111 1111
Q ss_pred HhcC----CCcccccCC------hhhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 90 FSKM----PWLAVPFSD------SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 90 ~~~~----~~~~~~~~~------~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.... +.......+ .+.+..+++.+|++++|++++.|.+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~ 153 (169)
T d1v58a1 101 YEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQ 153 (169)
T ss_dssp HHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEE
T ss_pred HHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEE
Confidence 1111 111111122 223457788999999999999999987643
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.91 E-value=1.1e-05 Score=63.55 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=77.8
Q ss_pred ceeeccc-cCCCEEEEE-EeccCCccChh-hHHHHHHHHHHH-hcCCCcE-EEEEEeCCCCHHHHHHhhcCCCCccccCC
Q 018808 188 RKISVSD-LEGKTIGLY-FSMSSYKASAE-FTPRLVEVYEKL-KGKGESF-EIVLISLDDEEESFKRDLGSMPWLALPFK 262 (350)
Q Consensus 188 ~~v~l~~-~~gk~vlv~-f~~~~C~~C~~-~~~~l~~~~~~~-~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 262 (350)
+.+++++ ++||.|+|+ +-+...|.|.. .+|.+.+.++++ ++.| + +|+.|++| +.-.+++|.+.+..-.+.++
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~g--vd~I~~iSvn-D~fv~~aW~~~~~~~~I~~l 108 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--FDDIYCITNN-DIYVLKSWFKSMDIKKIKYI 108 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--CSEEEEEESS-CHHHHHHHHHHTTCCSSEEE
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcC--CceEEEEecC-CHHHHHHHHhhcCcceEEEe
Confidence 4566766 488765555 45779999955 699999999998 5666 4 78999998 56666666665544456789
Q ss_pred chhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccch
Q 018808 263 DKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 263 ~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~ 296 (350)
.|...++.+.||+. ..-..++|| ||+|.+...-
T Consensus 109 sD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE 152 (179)
T d1xiya1 109 SDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQE 152 (179)
T ss_dssp ECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred eCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEe
Confidence 99999999999962 234578897 8998877653
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=4.7e-05 Score=59.77 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=62.0
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC----C------------CHHHHHHhhc-
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD----D------------EEESFKRDLG- 252 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d----~------------~~~~~~~~~~- 252 (350)
+..-.-..+.+|+.|....||+|+.+.+.+.++.++.+ +.++.+.+. + ++..+.++..
T Consensus 29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~~-----v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~ 103 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSGK-----VQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 103 (169)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTTS-----EEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhccc-----eeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHH
Confidence 33333445788999999999999999999988765432 777777663 1 1112222211
Q ss_pred CC--CCcccc-CC-------chhHHHHHHHcCCCCccEEEEECCCCCEEe
Q 018808 253 SM--PWLALP-FK-------DKSREKLARYFELSTLPTLVIIGPDGKTLH 292 (350)
Q Consensus 253 ~~--~~~~~~-~~-------~~~~~~~~~~~~v~~~P~~~lid~~G~i~~ 292 (350)
.. .....+ .. .+.+.++++.+|+.++|++++.|++|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~ 153 (169)
T d1v58a1 104 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQ 153 (169)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEE
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEE
Confidence 11 001111 11 233457888999999999999999997643
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.86 E-value=0.00016 Score=56.53 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
.+..+.+.+-.++ .++.|+...||+|..+.+.+.++.+++.+.+.+.++.+..
T Consensus 13 ~~~~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (172)
T d1z6ma1 13 TETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 66 (172)
T ss_dssp SSSSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CCCCCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccc
Confidence 3445567777788 8999999999999999999999999998877777777665
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=0.0002 Score=55.19 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=58.1
Q ss_pred ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEE--CCCC-HH----------------HHHh
Q 018808 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS--GDED-DE----------------AFKG 88 (350)
Q Consensus 29 ~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~--~d~~-~~----------------~~~~ 88 (350)
..+.+..-.+| +++.|.-.-||+|+++.|.+.++.+. ++.++.+. .... .. .+..
T Consensus 17 ~~iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~-----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~ 91 (156)
T d1eeja1 17 EMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDD 91 (156)
T ss_dssp GSEEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHH
T ss_pred cceeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc-----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHH
Confidence 34555555678 99999999999999999999887543 24444443 2211 11 1111
Q ss_pred HHhcCCCcccc-cCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 89 YFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
........... -...+.+..+++.+|++++|++++ .||+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v 133 (156)
T d1eeja1 92 VMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV 133 (156)
T ss_dssp HHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred HHhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence 11111111111 122455678999999999999776 468765
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.71 E-value=4.2e-05 Score=58.81 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC--C--CH--HHHHH-------------hhcC--C
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD--D--EE--ESFKR-------------DLGS--M 254 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d--~--~~--~~~~~-------------~~~~--~ 254 (350)
.+|.+|+.|.-..||+|+++.+.+..+.+. + ..+..+... . .. ..... .... .
T Consensus 25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 98 (150)
T d1t3ba1 25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 98 (150)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccc
Confidence 467889999999999999999999887543 2 444444432 1 11 10111 1110 0
Q ss_pred CCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 255 PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
...........+.++++.+||+++|++|+ .||+++
T Consensus 99 ~~~~~~~~i~~~~~la~~lGv~GTPt~~~--~nG~~i 133 (150)
T d1t3ba1 99 KEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI 133 (150)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred cchhhhhHHHHHHHHHHhcCcCCCCEEEE--cCCcEe
Confidence 11112222345678899999999998776 457654
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.42 E-value=0.00092 Score=51.89 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=40.8
Q ss_pred eeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 189 ~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.+.+-+-..++.|+.|+...||+|.++.+.+.++..++.+.+ .+.++.+..
T Consensus 16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 66 (172)
T d1z6ma1 16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF 66 (172)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccc
Confidence 344556667889999999999999999999999999988764 466666665
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.40 E-value=0.00034 Score=54.87 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=36.4
Q ss_pred ecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 32 KLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 32 ~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
.+..- .++ ++|.|+..-||+|+.+.+.+.++.+++.+.+.+....+..
T Consensus 11 ~~~~p~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~ 60 (181)
T d1beda_ 11 VLKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSF 60 (181)
T ss_dssp ECSSCCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSS
T ss_pred ECCCCCCCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccc
Confidence 33443 567 8899999999999999999999999998764444444443
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.37 E-value=0.00036 Score=53.30 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=56.2
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-CHHHHH---hH------------Hhc
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFK---GY------------FSK 92 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-~~~~~~---~~------------~~~ 92 (350)
.+.+..-.+| +++.|.-.-||+|+++.+.+.++.+... ++.++...... ...... .. ...
T Consensus 18 ~~i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~ 94 (150)
T d1t3ba1 18 MIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI---TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK 94 (150)
T ss_dssp SEEECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHTTE---EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT
T ss_pred ceEECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhccCc---eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhh
Confidence 3445555677 8999999999999999999988865421 23333333321 111111 00 011
Q ss_pred CCCccc-cc-CChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 93 MPWLAV-PF-SDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 93 ~~~~~~-~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.....- .. ...+.+..+++.+|++++|++++ .||+++
T Consensus 95 ~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~--~nG~~i 133 (150)
T d1t3ba1 95 GNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI 133 (150)
T ss_dssp TCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred hccccchhhhhHHHHHHHHHHhcCcCCCCEEEE--cCCcEe
Confidence 111111 11 11344668899999999999887 467654
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.26 E-value=0.00068 Score=52.89 Aligned_cols=102 Identities=14% Similarity=0.281 Sum_probs=68.2
Q ss_pred ceeecCCC-CCc-EEEEE-ecCCChhhh-hhhHHHHHHHHHh-ccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 29 DQVKLDSL-KGK-IGLYF-SASWCGPCQ-RFTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 29 ~~~~l~~~-~gk-~~v~F-~~~~C~~C~-~~~~~l~~l~~~~-~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
.+++++++ +|| ++|.+ -+..-|.|. .++|.+.+.+++| ++++--+++++++|+ .--.+.|.+..+...+... +
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~I~~iSvnD-~fv~~aW~~~~~~~~I~~l-s 109 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNND-IYVLKSWFKSMDIKKIKYI-S 109 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSC-HHHHHHHHHHTTCCSSEEE-E
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCceEEEEecCC-HHHHHHHHhhcCcceEEEe-e
Confidence 35777774 777 55554 456889995 5799999999998 566533788888874 3445555555554333322 3
Q ss_pred hhHHHHHhhcCC-----------CCcceEEEECCCCeEEec
Q 018808 104 ETRDKLDELFKV-----------MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 104 ~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~ 133 (350)
|.+.++++.||. ++.-..++++ +|.|.+.
T Consensus 110 D~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~ 149 (179)
T d1xiya1 110 DGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM 149 (179)
T ss_dssp CTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred CCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEE
Confidence 445688888886 2334577886 8988774
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.16 E-value=0.0014 Score=51.12 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.+++.|+.|..-.||+|+.+.+.+..+.+++.+. +.+..+.+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~ 58 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV 58 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc---cceeEEec
Confidence 4578888899999999999999999999888765 44444433
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=97.01 E-value=0.00069 Score=44.81 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=39.1
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|.+....|.+ .| +.+..+.++.+.+. .+..+.+|...+|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~~--i~~~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------AG--LAYNTVDISLDDEA--------------------RDYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH--------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHHHH-------cC--CceEEEEccCCHHH--------------------HHHHHHhCCCCcCE
Confidence 466889999999877665533 34 55666666655432 34556778999998
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ +|+.+
T Consensus 54 i~i---~g~~i 61 (74)
T d1r7ha_ 54 VEV---DGEHW 61 (74)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 764 45544
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.003 Score=50.21 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=29.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHH---HHHHHHhcCCCcEEEEEEeC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vv~v~~ 240 (350)
.+++.|+.|+.-+||+|..+.|.|. ++.+.+++. +.++.+.+
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~---v~~~~~~~ 156 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHV 156 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEEC
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCC---cEEEEEec
Confidence 4677888888899999999999775 444444433 55655544
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.32 E-value=0.003 Score=44.77 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=43.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-++.|..+|||+|......|.++.-++. .+.+..+..+.+.+.++. .+.+..+.+.+|
T Consensus 13 ~Vviysk~~Cp~C~~ak~ll~~~~~~~~---~~~~~e~d~~~d~~~~~~-------------------~l~~~~g~~tvP 70 (105)
T d1ktea_ 13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQD-------------------YLQQLTGARTVP 70 (105)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHH-------------------HHHHHHSCCCSC
T ss_pred CEEEEECCCCchHHHHHHHHHHhCCccc---eeeeeecccccccHHHHH-------------------HHhhccCCCcCc
Confidence 4678889999999987766654322221 366666666555443322 344556778899
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 71 qIfi---~g~~IG 80 (105)
T d1ktea_ 71 RVFI---GKECIG 80 (105)
T ss_dssp EEEE---TTEEEE
T ss_pred EEEE---CCEEEe
Confidence 8877 677664
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0037 Score=41.31 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=35.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||+|.+....|.+ .| +.+..+.++.+.+. .+..+..|...+|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~~--i~y~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHh-------cC--ceeEEEeecCCHHH--------------------HHHHHhcCCCCCCE
Confidence 456888999999877665533 33 44555666654432 33445678999999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 54 i~i 56 (76)
T d1h75a_ 54 VIA 56 (76)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0025 Score=50.03 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=32.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
..++++|+.|+.-.||+|+.+.+.|..+.+........+.++...+.
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 35677888899999999999998876655544433333666666553
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=96.17 E-value=0.011 Score=39.58 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|..+|||+|.+....|.+. ++.+..++++.+.+ ....+.+..|.+++|.
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~--------------------~~~~~~~~~g~~tvP~ 54 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAA--------------------KREEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSH--------------------HHHHHHHHHSSCCSCE
T ss_pred EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHH--------------------HHHHHHHHhCCCCCCe
Confidence 3457789999999866655432 36667777766543 2235666678889998
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 55 i~i---~~~~IG 63 (82)
T d1fova_ 55 IFI---DAQHIG 63 (82)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEe
Confidence 875 566554
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.14 E-value=0.011 Score=38.68 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..++||+|.+....|.+ . .+.+..++++.+.+. ....+.+|.+++|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~-~i~~~~~~i~~~~~~---------------------~~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------A-GLAYNTVDISLDDEA---------------------RDYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T-TCCCEEEETTTCHHH---------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHHHH-------c-CCceEEEEccCCHHH---------------------HHHHHHhCCCCcCE
Confidence 566888999999987765543 2 367777888776531 13345578889998
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 54 i~i---~g~~ig 62 (74)
T d1r7ha_ 54 VEV---DGEHWS 62 (74)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEe
Confidence 765 566553
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.012 Score=45.81 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=28.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEEC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSG 79 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~ 79 (350)
..++ ++|.|+...||+|+++.+.+..+.+..... ..+.+.....
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 3567 889999999999999988775544433221 1345555544
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.07 E-value=0.047 Score=39.13 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=49.8
Q ss_pred ccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 194 DLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 194 ~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.+++.+.|+.|-. ..|+.|..+...|+++..- .+ .+.+.....+. +...++++.
T Consensus 19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sd---ki~~~~~~~~~---------------------~e~~~~~~~ 73 (119)
T d1a8la1 19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD---KLSYEIVDFDT---------------------PEGKELAKR 73 (119)
T ss_dssp GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT---TEEEEEEETTS---------------------HHHHHHHHH
T ss_pred hCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CC---CeEEEEeccCc---------------------chhhhHHHh
Confidence 4555666666664 5799998877777666432 22 36665555442 223678999
Q ss_pred cCCCCccEEEEECCC--CCEEecc
Q 018808 273 FELSTLPTLVIIGPD--GKTLHSN 294 (350)
Q Consensus 273 ~~v~~~P~~~lid~~--G~i~~~~ 294 (350)
|++...|++.+.+.. ..|++..
T Consensus 74 ~~ver~Ps~~i~~~g~~~gIrF~G 97 (119)
T d1a8la1 74 YRIDRAPATTITQDGKDFGVRYFG 97 (119)
T ss_dssp TTCCSSSEEEEEETTBCCSEEEES
T ss_pred hccccCceEEEecCCcccceEEEe
Confidence 999999999988542 2355554
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.018 Score=37.78 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|..+||++|......|.+ + .+.+..++++.+.+. . ...+..|.+++|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~-~i~y~~~~i~~~~~~--------------------~-~~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------R-GFDFEMINVDRVPEA--------------------A-EALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T-TCCCEEEETTTCHHH--------------------H-HHHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHh-------c-CceeEEEeecCCHHH--------------------H-HHHHhcCCCCCCE
Confidence 456788999999987766543 2 366777788776541 1 2234468889999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
+++ +|+.+
T Consensus 54 i~i---~~~~i 61 (76)
T d1h75a_ 54 VIA---GDLSW 61 (76)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 776 45554
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.84 E-value=0.032 Score=36.53 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=45.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
+..+++.|+.|.......++..+++.- +.++.-+. +.. ++. .||+.++|.+
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv~---d~~-----------------------ei~-~ygVmstPal 54 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK---EMD-----------------------QIL-EAGLTALPGL 54 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC---SHH-----------------------HHH-HHTCSSSSCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEeC---CHH-----------------------HHH-HcCCcCCCEE
Confidence 445689999999999988888877642 45555552 322 565 4999999999
Q ss_pred EEECCCCeEEecC
Q 018808 122 VILDENGKVLSDG 134 (350)
Q Consensus 122 ~lid~~G~v~~~~ 134 (350)
++ ||+++..+
T Consensus 55 vI---dg~vv~~G 64 (77)
T d1iloa_ 55 AV---DGELKIMG 64 (77)
T ss_dssp EE---TTEEEECS
T ss_pred EE---CCEEEEEe
Confidence 98 88888754
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.81 E-value=0.0032 Score=44.56 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=39.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|...-..|.++ .-....+.+.-+..+.+.+++++ .+.+..|...+|.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~----~~~~~~~~~~e~d~~~d~~~~~~------------------~l~~~~g~~tvPq 71 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQL----PFKEGLLEFVDITATSDTNEIQD------------------YLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHS----CBCTTSEEEEEGGGSTTHHHHHH------------------HHHHHHSCCCSCE
T ss_pred EEEEECCCCchHHHHHHHHHHh----CCccceeeeeecccccccHHHHH------------------HHhhccCCCcCcE
Confidence 4568899999998776655443 32222255655554444333222 2345567888998
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+|+ +|+.+
T Consensus 72 Ifi---~g~~I 79 (105)
T d1ktea_ 72 VFI---GKECI 79 (105)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 875 46544
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=95.75 E-value=0.0095 Score=38.96 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=36.1
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..++||+|.+....|.+. + +.+..+.++.+.. ...+.+..+...+|.
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~-------~--i~~~~~~v~~~~~--------------------~~~~~~~~~~~tvP~ 57 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK-------G--LSFEEIILGHDAT--------------------IVSVRAVSGRTTVPQ 57 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEETTTTCC--------------------HHHHHHHTCCSSSCE
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CCeEEEEccCcHH--------------------HHHHHHHhCCccCCE
Confidence 3568899999998877666443 2 3344444443211 134556678889998
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ +|+.+
T Consensus 58 i~i---~g~~I 65 (74)
T d1nm3a1 58 VFI---GGKHI 65 (74)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 754 45544
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0066 Score=41.02 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=28.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d 80 (350)
++.|..++||+|.+....|.++...+. .+.+..++++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEEecC
Confidence 577888999999998888888877775 3667776654
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=95.52 E-value=0.026 Score=36.72 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=39.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-++.|..++||+|.+....|.+. .+.+..++++.+.+ ...+.+..+...+|
T Consensus 6 ~I~iYs~~~C~~C~~ak~lL~~~--------~i~~~~~~v~~~~~---------------------~~~~~~~~~~~tvP 56 (74)
T d1nm3a1 6 SISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDAT---------------------IVSVRAVSGRTTVP 56 (74)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCC---------------------HHHHHHHTCCSSSC
T ss_pred cEEEEECCCCHHHHHHHHHHHHc--------CCCeEEEEccCcHH---------------------HHHHHHHhCCccCC
Confidence 35678899999999877665542 25556666654421 12444556778899
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 57 ~i~i---~g~~IG 66 (74)
T d1nm3a1 57 QVFI---GGKHIG 66 (74)
T ss_dssp EEEE---TTEEEE
T ss_pred EEEE---CCEEEE
Confidence 8765 566553
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=95.33 E-value=0.01 Score=39.66 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=36.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||+|.+....|.+. + +.+..+.++.+... ..++.+..|...+|.
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~-------~--i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP~ 54 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK-------G--VSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCE
T ss_pred EEEEeCCCCHhHHHHHHHHHHc-------C--CCeEEEeccchHHH-------------------HHHHHHHhCCCCCCe
Confidence 3457889999998765555332 3 44445555543221 245666778889998
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ +|+.+
T Consensus 55 i~i---~~~~I 62 (82)
T d1fova_ 55 IFI---DAQHI 62 (82)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 764 45544
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0069 Score=40.91 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=28.2
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
++.|..++||+|.+.-..|.++..++.. +.+.-+..+
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecC
Confidence 4678899999999998888888777754 666655543
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.99 E-value=0.089 Score=34.28 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=43.2
Q ss_pred EeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEE
Q 018808 204 FSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVI 283 (350)
Q Consensus 204 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 283 (350)
..++.|+.|.+.....++...++.-. .++..|. +. .++. +|||.++|.+++
T Consensus 6 Vlg~gC~~C~~~~~~v~~a~~e~gi~---a~v~kv~---d~----------------------~ei~-~ygVmstPalvI 56 (77)
T d1iloa_ 6 IYGTGCANCQMLEKNAREAVKELGID---AEFEKIK---EM----------------------DQIL-EAGLTALPGLAV 56 (77)
T ss_dssp EECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC---SH----------------------HHHH-HHTCSSSSCEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHHcCCc---eEEEEeC---CH----------------------HHHH-HcCCcCCCEEEE
Confidence 44889999999999988888776533 7776662 11 3455 599999999875
Q ss_pred ECCCCCEEecc
Q 018808 284 IGPDGKTLHSN 294 (350)
Q Consensus 284 id~~G~i~~~~ 294 (350)
||+++...
T Consensus 57 ---dg~vv~~G 64 (77)
T d1iloa_ 57 ---DGELKIMG 64 (77)
T ss_dssp ---TTEEEECS
T ss_pred ---CCEEEEEe
Confidence 57777654
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.52 E-value=0.3 Score=34.64 Aligned_cols=70 Identities=19% Similarity=0.384 Sum_probs=46.6
Q ss_pred CCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 34 DSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 34 ~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
+.++.. .++.|-. ..|+.|..+...+.++ ..+.+ .+.+.....+... .+.+++
T Consensus 18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~el-a~lSd--ki~~~~~~~~~~e----------------------~~~~~~ 72 (119)
T d1a8la1 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQEL-SELTD--KLSYEIVDFDTPE----------------------GKELAK 72 (119)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHH-HTTCT--TEEEEEEETTSHH----------------------HHHHHH
T ss_pred HhCCCCEEEEEEecCCCchhHHHHHHHHHHH-HhhCC--CeEEEEeccCcch----------------------hhhHHH
Confidence 345555 5555554 4699999888777766 34444 3666555554332 247899
Q ss_pred hcCCCCcceEEEECCCCe
Q 018808 112 LFKVMGIPHLVILDENGK 129 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~ 129 (350)
.|++...|++.|.+ +|+
T Consensus 73 ~~~ver~Ps~~i~~-~g~ 89 (119)
T d1a8la1 73 RYRIDRAPATTITQ-DGK 89 (119)
T ss_dssp HTTCCSSSEEEEEE-TTB
T ss_pred hhccccCceEEEec-CCc
Confidence 99999999999885 443
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=91.59 E-value=1 Score=28.86 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=43.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+.-|..++|+.|......|. +. . .+.+..++++++. .+...|+.+ +|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~---~~---~-~~~~~~vdI~~d~------------------------~l~~~y~~~-IPV 49 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALA---QA---R-AGAFFSVFIDDDA------------------------ALESAYGLR-VPV 49 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHH---HT---T-CCCEEEEECTTCH------------------------HHHHHHTTT-CSE
T ss_pred EEEECCCCccHHHHHHHHHH---hc---c-CCcEEEEEccCCH------------------------HHHHHhCCe-eeE
Confidence 34567789999976543332 21 1 2557777777665 577778855 785
Q ss_pred EEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHH
Q 018808 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159 (350)
Q Consensus 121 ~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~ 159 (350)
+. + .++.... +|+..+.+.+++.
T Consensus 50 l~-~-~~~~~l~--------------w~fd~~~l~~~L~ 72 (75)
T d1ttza_ 50 LR-D-PMGRELD--------------WPFDAPRLRAWLD 72 (75)
T ss_dssp EE-C-TTCCEEE--------------SCCCHHHHHHHHH
T ss_pred EE-E-CCeeEEc--------------CccCHHHHHHHHh
Confidence 43 3 3454443 3567777776654
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=91.52 E-value=0.61 Score=29.97 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=34.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
|..|..++|+.|......|. +. .+ +.+.-|+++++ .++..+|+.. +|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~----~~--~~--~~~~~vdI~~d-----------------------~~l~~~y~~~-IPV 49 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALA----QA--RA--GAFFSVFIDDD-----------------------AALESAYGLR-VPV 49 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHH----HT--TC--CCEEEEECTTC-----------------------HHHHHHHTTT-CSE
T ss_pred EEEECCCCccHHHHHHHHHH----hc--cC--CcEEEEEccCC-----------------------HHHHHHhCCe-eeE
Confidence 34578889999976543332 21 23 45556666644 4578899875 895
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+ ++| +|...
T Consensus 50 l-~~~-~~~~l 58 (75)
T d1ttza_ 50 L-RDP-MGREL 58 (75)
T ss_dssp E-ECT-TCCEE
T ss_pred E-EEC-CeeEE
Confidence 4 343 34443
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.36 Score=33.66 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECC
Q 018808 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (350)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (350)
+.||+|......|. .+ .+.+..+.++.+.+ ....+.+..+-+.+|.+++
T Consensus 28 p~Cp~c~~ak~lL~----~~----~i~~~~~~v~~~~~--------------------~~~~l~~~t~~~TvPqIFi--- 76 (109)
T d1wika_ 28 AKCGFSKQILEILN----ST----GVEYETFDILEDEE--------------------VRQGLKTFSNWPTYPQLYV--- 76 (109)
T ss_dssp CCSSTHHHHHHHHH----HT----CSCEEEEESSSCHH--------------------HHHHHHHHHSCCSSCEEEC---
T ss_pred CCChHHHHHHHHHH----hc----CCCceEEEecccHH--------------------HHHHHHHhcCCCCCCeEEE---
Confidence 78999998766554 32 25566677776643 2234555567788999886
Q ss_pred CCeEEe
Q 018808 127 NGKVLS 132 (350)
Q Consensus 127 ~G~v~~ 132 (350)
+|+.+.
T Consensus 77 ~g~~IG 82 (109)
T d1wika_ 77 RGDLVG 82 (109)
T ss_dssp SSSEEE
T ss_pred CCEEEc
Confidence 666654
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.043 Score=43.19 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHH---HHHHHhccCCCEEEEEEEC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~~v~i~~ 79 (350)
.++ .++.|+.-+||+|..+.|.|. ++.+.+++. +.++...+
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~--v~~~~~~~ 156 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG--VKMTKYHV 156 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT--CCEEEEEC
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCC--cEEEEEec
Confidence 467 888999999999999998764 566666653 55555443
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.66 E-value=0.49 Score=37.62 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=31.5
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
+.||=.|-+.||..|..-...|.++.+. . ++-.+++.+|
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~--~---~Vi~La~HVd 44 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK--G---DVVGLSYHVD 44 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH--T---SSEEEEEECS
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC--C---CEEEEEeccc
Confidence 4577778899999999999999888653 2 3888888887
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.26 E-value=0.48 Score=32.97 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=33.1
Q ss_pred cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECC
Q 018808 207 SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGP 286 (350)
Q Consensus 207 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~ 286 (350)
+.||+|.+....|. .+ + +.+..+.++++.+. ...+.+..+...+|.+|+
T Consensus 28 p~Cp~c~~ak~lL~----~~---~--i~~~~~~v~~~~~~-------------------~~~l~~~t~~~TvPqIFi--- 76 (109)
T d1wika_ 28 AKCGFSKQILEILN----ST---G--VEYETFDILEDEEV-------------------RQGLKTFSNWPTYPQLYV--- 76 (109)
T ss_dssp CCSSTHHHHHHHHH----HT---C--SCEEEEESSSCHHH-------------------HHHHHHHHSCCSSCEEEC---
T ss_pred CCChHHHHHHHHHH----hc---C--CCceEEEecccHHH-------------------HHHHHHhcCCCCCCeEEE---
Confidence 67999988766553 22 2 34445556644331 234555667788999885
Q ss_pred CCCEE
Q 018808 287 DGKTL 291 (350)
Q Consensus 287 ~G~i~ 291 (350)
+|+.+
T Consensus 77 ~g~~I 81 (109)
T d1wika_ 77 RGDLV 81 (109)
T ss_dssp SSSEE
T ss_pred CCEEE
Confidence 46654
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=84.88 E-value=0.58 Score=33.63 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC-
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL- 275 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 275 (350)
++++++.|+... .........+.+++++++++ +.++.+..++. ....+.||+
T Consensus 23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k---i~Fv~vd~~~~-----------------------~~~l~~~gl~ 75 (133)
T d2djka1 23 GIPLAYIFAETA-EERKELSDKLKPIAEAQRGV---INFGTIDAKAF-----------------------GAHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT-----------------------GGGTTTTTCC
T ss_pred CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc---eEEEEEeHHHh-----------------------HHHHHHhcCC
Confidence 567777777653 34567778888999988866 77777754422 224566777
Q ss_pred -CCccEEEEECCCCCEEecc
Q 018808 276 -STLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 276 -~~~P~~~lid~~G~i~~~~ 294 (350)
...|.+++++.+++..+..
T Consensus 76 ~~~~P~~~i~~~~~~~~~~~ 95 (133)
T d2djka1 76 TDKFPAFAIQEVAKNQKFPF 95 (133)
T ss_dssp SSSSSEEEEECTTTCCBCCC
T ss_pred cccCCcEEEEEcCCCceecC
Confidence 4589999998887655443
|