Citrus Sinensis ID: 018825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Secondary Structure (PSIPRED)
cccccccEEEcccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEccccccHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEcccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccc
Coil and Loop (DISEMBL)
MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIIllmfsptgkpslcngkrSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRywtnpdkinsvEHLGQMENSLRDSLNHLRMHKenlgkqelmslecttqfqngicipfrmgseeqlqtlswipnndnrhmvlpedpnllshrdvecsgsssfgsysgyfgpgksseisnsgqdssllselsgTQSLrlqlggqcsyipynvsllndkfqpvsemniqenpvdyhvsgslevprpgfdttpgswastsgpcevtlfdERLYSQQLN
Flexible Loop (DISEMBL)
mgrvklkikklentngrqatyakrkhgimkKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKfaqltpqeraKRKLESLEALKKTfkkldhdvnvQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDttpgswastsgpcevtLFDERLYSQQLN
Low Complexity Region (SEG)
MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANElsilcdidiillMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECsgsssfgsysgyfgpgkssEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Disordered region (IsUnstruct)
*************************HGIMKKANELSILCDIDIILLMFSPTGKPSLCN*****IEEVIAKFA*********************FKKLDHDVNVQEFLG***********************HRRLRYWTNP*********************************ELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPN*************************************************************LRLQLGGQCSYIPYNVSLLNDKFQPVSEMNI****VDYHV************************CEVTLFD*********
Disordered Region (DISOPRED)
MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERA********************************************************Y*TNPDKINSVEHLG*MENSLRDSLNHLRMHKEN**************************************************************************************************QSLRLQLGGQCSYIPYNVSL*******************YHV*********************SGPCEVTLFD**L******
Disordered Region (DISEMBL)
MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPG*****************LSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Disordered Region (DISPRO)
****KLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQL**L*****************NLLSHRDVECSGSSSFGSYSGYFGP**SS*********SLL**LSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPxxxxxxxxxxxxxxxxxxxxxDHDVNVQEFLGTSSQTxxxxxxxxxxxxxxxxxxxxxLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q84NC5	227	MADS-box transcription fa	no	no	0.342	0.528	0.376	6e-14
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.442	0.654	0.329	8e-14
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.225	0.308	0.415	3e-13
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.502	0.679	0.265	4e-13
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.42	0.644	0.320	1e-12
O82794	220	MADS-box protein AGL24 OS	no	no	0.151	0.240	0.566	1e-12
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.391	0.516	0.339	1e-12
Q944S9	224	MADS-box transcription fa	no	no	0.208	0.325	0.452	1e-12
Q38847	268	Agamous-like MADS-box pro	no	no	0.465	0.608	0.294	2e-12
Q6H711	260	MADS-box transcription fa	no	no	0.428	0.576	0.277	3e-12

>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 18/138 (13%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGR K+ IK+++NT  RQ T++KR+ G+MKKA EL+ILCD D+ L++FS TG+  L +  
Sbjct: 1   MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGR--LYDFS 58

Query: 61  RSSIEEVIAKFAQ--------LTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLG--TS 110
            SS++ +I ++ +        L P   AK     +  L++  + L H  N ++ LG   S
Sbjct: 59  SSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHH--NNRQLLGEEIS 116

Query: 111 SQTIEDLTNQARLLQSQL 128
           + T+ DL    +LLQ+Q+
Sbjct: 117 NFTVRDL----QLLQNQV 130

Probable transcription factor.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 18/173 (10%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGR K++IK++ENT  RQ T++KR+ G++KKA+ELS+LCD ++ L++FS +GK    +  
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  RSSIEEVIAKF-----AQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIE 115
            SS++++I ++     A++T  +      E +  +K   +KL    N++  +G      E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCE-MTRMKNENEKL--QTNIRRMMG------E 111

Query: 116 DLTN----QARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHL 164
           DLT+    +   L  QL     R+R   N   +  +E+L + E  L D  +HL
Sbjct: 112 DLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHL 164

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 61/89 (68%), Gaps = 10/89 (11%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK----PSL 56
          MGR +++IKK+EN N RQ T++KR++G++KKA ELSILCD ++ L++FS TGK     S+
Sbjct: 1  MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query: 57 CNGKRSSIEEVIAKFAQLTPQERAKRKLE 85
          C      +E++++++   T     K++ E
Sbjct: 61 C------MEQILSRYGYTTASTEHKQQRE 83

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 31/207 (14%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGR K++IK++EN+  RQ T++KR+ G++KKANEL++LCD  + +++FS TGK       
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
             S+ E+I ++   T                  F++++HD           Q + ++T  
Sbjct: 61  ACSLRELIEQYQHAT---------------NSHFEEINHD----------QQILLEMTR- 94

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKIN-SVEHLGQMENSLRDSLNHLRMHKENLGKQELMSL 179
              +++++ ++   +R +T  D  + +++ +  +E  L  S++ +R  K  L  Q+L +L
Sbjct: 95  ---MKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNL 151

Query: 180 ECTTQ-FQNGICIPFRMGSEEQLQTLS 205
               Q  ++     +RM +E Q   L+
Sbjct: 152 RRKEQILEDQNTFLYRMINENQQAALT 178

Probable transcription factor.

Zea mays (taxid: 4577)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 37/184 (20%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGR K+ I++++++  RQ T++KR+ G++KKA EL+ILCD ++ L++FS TGK  L +  
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGK--LYDFA 58

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            SS++ VI ++         K K+E                  Q+ L  +S+ ++    +
Sbjct: 59  SSSMKSVIDRY--------NKSKIEQ-----------------QQLLNPASE-VKFWQRE 92

Query: 121 ARLLQSQ---LSEMHRRLRYWTNPDKIN--SVEHLGQMENSLRDSLNHLRMHKENLGKQE 175
           A +L+ +   L E HR++      +++N  SV  L  +EN +  SL  +RM KE L  QE
Sbjct: 93  AAVLRQELHALQENHRQMM----GEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQE 148

Query: 176 LMSL 179
           +  L
Sbjct: 149 IQEL 152

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
          M R K++IKK++N   RQ T++KR+ GI KKA+ELS+LCD D+ L++FS TGK
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGK 53

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 28/165 (16%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           M R K++IKK++N+  RQ T++KR+ G+ KKA ELS+LCD D+ L++FS TGK  L +  
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGK--LFDYS 58

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            SS+++++            +R L S     K  +KLD             Q +E+ +N 
Sbjct: 59  SSSMKQIL-----------ERRDLHS-----KNLEKLDQP-------SLELQLVEN-SNY 94

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKIN-SVEHLGQMENSLRDSLNHL 164
           +R L  ++SE   RLR     +    ++E L Q+E SL   L+ +
Sbjct: 95  SR-LSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRV 138

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
          MGR K++IK++EN   RQ TY+KR+ GIMKKA EL++LCD  + ++MFS TGK       
Sbjct: 1  MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61 RSSIEEVIAKFAQ 73
           + I+ +  ++ Q
Sbjct: 61 STDIKGIFDRYQQ 73

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 96/170 (56%), Gaps = 7/170 (4%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGR K++IK++EN N RQ T++KR+ G++KKA ELS+LCD ++ +++FS +GK  L    
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGK--LFEYS 58

Query: 61  RSSIEEVIAKFA--QLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLT 118
            + +++ ++++   Q +   +A+     ++ LK    KL       +  G +  T ++L 
Sbjct: 59  STGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQ 118

Query: 119 N-QARLLQSQLSEMHRRLRYWTNP-DKINSVEHLGQMEN-SLRDSLNHLR 165
           + + +L  + ++   R+ R  TN  ++    E   ++EN +LR  +  LR
Sbjct: 119 SLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELR 168

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 92/180 (51%), Gaps = 30/180 (16%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGR K++IK++EN   RQ T++KR+ G++KKANEL++LCD  + +++FS TGK       
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
             S+ E+I  +  +T                  F++++HD           Q   ++T  
Sbjct: 61  TCSLRELIEHYQTVT---------------NTHFEEINHD----------QQIFVEMTR- 94

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKIN-SVEHLGQMENSLRDSLNHLRMHKENLGKQELMSL 179
              +++++ ++   +R +T  D  N ++  +  +E  L  S+  +R  K  L  Q+L +L
Sbjct: 95  ---MRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNL 151

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224098892	363	predicted protein [Populus trichocarpa]	0.994	0.958	0.737	1e-154
255562902	360	mads box protein, putative [Ricinus comm	0.988	0.961	0.774	1e-151
224112247	336	predicted protein [Populus trichocarpa]	0.94	0.979	0.707	1e-140
356519846	360	PREDICTED: MADS-box transcription factor	0.988	0.961	0.68	1e-135
359491700	375	PREDICTED: myocyte-specific enhancer fac	0.991	0.925	0.628	1e-129
388513361	360	unknown [Lotus japonicus]	0.988	0.961	0.654	1e-126
449435336	339	PREDICTED: agamous-like MADS-box protein	0.954	0.985	0.641	1e-122
449478658	339	PREDICTED: LOW QUALITY PROTEIN: agamous-	0.954	0.985	0.641	1e-122
343160541	361	MADS1 protein [Eschscholzia californica]	0.971	0.941	0.641	1e-120
356577225	372	PREDICTED: agamous-like MADS-box protein	0.985	0.927	0.628	1e-120

>gi|224098892|ref|XP_002311308.1| predicted protein [Populus trichocarpa] gi|222851128|gb|EEE88675.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/354 (73%), Positives = 309/354 (87%), Gaps = 6/354 (1%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLC G 
Sbjct: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCKGA 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            SSIEEVI KFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+ EFLGTSSQTIEDLT+Q
Sbjct: 61  SSSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           +RLLQ+QLS++H++L YWTNPD+I+S+EHLGQ+E+SLR+SLN +R HKE+LGKQ LMSLE
Sbjct: 121 SRLLQNQLSDVHKKLSYWTNPDEISSLEHLGQLESSLRESLNRIRSHKEHLGKQHLMSLE 180

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C +QFQN + +PFRMG E+QL  +SWIPN D++H++LPEDPNLL HRD ECS ++SFGSY
Sbjct: 181 CHSQFQNAMHVPFRMGVEQQLPPISWIPNTDSQHIMLPEDPNLLPHRDAECSATTSFGSY 240

Query: 241 SGYFGPGKSSEISNSGQDSSL---LSELSGTQSLRLQLGGQCSYIP--YNVSLLND-KFQ 294
           SGYFG GK+SE+S+SGQ+S +   L E +GT SLRLQ+ GQ  Y+P  YN++LLND KFQ
Sbjct: 241 SGYFGAGKNSELSSSGQESGMNGILDEFNGTASLRLQMAGQYPYLPGSYNLNLLNDSKFQ 300

Query: 295 PVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQQ 348
           P +EM  Q++P D+HV+GS E P+PG+D+TP  WAST G C VT+FD+ LYSQ+
Sbjct: 301 PAAEMKTQKSPEDFHVNGSFEAPKPGYDSTPCGWASTPGSCAVTMFDDHLYSQE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562902|ref|XP_002522456.1| mads box protein, putative [Ricinus communis] gi|223538341|gb|EEF39948.1| mads box protein, putative [Ricinus communis]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/351 (77%), Positives = 315/351 (89%), Gaps = 5/351 (1%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIKKLENTNGRQATY KRKHGI+KKA ELSILCDIDIILLMFSPTGKPS+C GK
Sbjct: 1   MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGKPSICKGK 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+ EFLGTSSQTIE+LTNQ
Sbjct: 61  RS-IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEELTNQ 119

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
            RLLQS LSE H+RL YWT PDKINS++HLGQ+ENSLR+SLN ++ HKE + KQ+LMSLE
Sbjct: 120 LRLLQSHLSEAHKRLSYWTCPDKINSIDHLGQLENSLRESLNQIQAHKEYIEKQQLMSLE 179

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C +QFQNG+ +PFRMG+E+QL  + WIPNND++ +VLPEDPNLL HRDVECS SSSFGSY
Sbjct: 180 CNSQFQNGMHLPFRMGAEQQLPPMQWIPNNDSQQIVLPEDPNLLPHRDVECSASSSFGSY 239

Query: 241 SGYFGPGKSSEISNSGQDSSL---LSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPV 296
           SGYFG GKSSE+SNS Q++ L   L+EL+GT SLRLQL GQ  ++PYN+++LND KFQP 
Sbjct: 240 SGYFGTGKSSELSNSSQENGLNGILNELNGTASLRLQLAGQYPHLPYNLNMLNDTKFQPA 299

Query: 297 SEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQ 347
           ++MNIQE+PVD+HV+GS EVP+PG+DTTPGSWAS+SGPC VT+FDE+LYS+
Sbjct: 300 ADMNIQESPVDFHVNGSFEVPKPGYDTTPGSWASSSGPCAVTMFDEQLYSR 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112247|ref|XP_002316130.1| predicted protein [Populus trichocarpa] gi|222865170|gb|EEF02301.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/352 (70%), Positives = 294/352 (83%), Gaps = 23/352 (6%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIKKLENTNGRQAT+AKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLC G 
Sbjct: 1   MGRVKLKIKKLENTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCKGA 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            SSIEEVI KFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+ EFLGTSSQTIEDLT+Q
Sbjct: 61  -SSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQ 119

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           +RLLQ+QLS++H+RL YWTNPDKINS+EHLGQ+ENSLR+SLN +R               
Sbjct: 120 SRLLQNQLSDVHKRLSYWTNPDKINSIEHLGQLENSLRESLNQIR--------------- 164

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
            + +FQN + +PFRMG+E+QL  L WIPNND++H++LPE+ NLL HRD EC+ S+SFGSY
Sbjct: 165 -SCKFQNEMHVPFRMGAEQQLSPLLWIPNNDSQHIMLPEEQNLLPHRDAECTASTSFGSY 223

Query: 241 SGYFGPGKSSEISNSGQDSSL---LSELSGTQSLRLQLGGQCSYI--PYNVSLLND-KFQ 294
           SGYFG GK+SE+S+SGQ+S +   L EL+GT SLRL+L GQ  Y+  PYN++LLND KFQ
Sbjct: 224 SGYFGAGKNSELSSSGQESGMNGILDELNGTASLRLRLAGQYPYLPGPYNLNLLNDTKFQ 283

Query: 295 PVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYS 346
           P +EMNIQ+ P D++VSGS E P+P +D+ P  WASTSG C VT+FD+ LY+
Sbjct: 284 PAAEMNIQKGPGDFNVSGSFEAPKPEYDSGPHGWASTSGSCAVTMFDDHLYA 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519846|ref|XP_003528580.1| PREDICTED: MADS-box transcription factor 3-like [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/350 (68%), Positives = 287/350 (82%), Gaps = 4/350 (1%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LENTNGRQATYAKRK+GIMKKA E+SILCDIDIILLMF+P GKPSLC G+
Sbjct: 1   MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAEISILCDIDIILLMFAPNGKPSLCRGR 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            S+ EEVIAKF QLTPQERAKRKLE+LEALKKTFKKLDHDVNVQEF+GTSSQTIEDL+NQ
Sbjct: 61  HSNFEEVIAKFGQLTPQERAKRKLETLEALKKTFKKLDHDVNVQEFMGTSSQTIEDLSNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK-QELMSL 179
           ARLLQ+Q+SE H+RL +WT  DKI++V+ LGQMENSLR+SLN +R  KEN+ K Q+LMSL
Sbjct: 121 ARLLQTQISETHKRLSHWTEFDKISNVDQLGQMENSLRESLNQIRTRKENIKKQQQLMSL 180

Query: 180 ECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGS 239
           +C  QF N + IPFRM  E+QLQ LSWI N+DN ++VLPED N+  H+DVE S SSSFGS
Sbjct: 181 QCNNQF-NEMNIPFRMSVEQQLQPLSWIANDDNHNIVLPEDSNMFLHKDVEGSTSSSFGS 239

Query: 240 YSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPVSE 298
           +  Y G    +++SNS Q++ +LS++S T  +RLQL G   Y+PYN +L N+ KFQP +E
Sbjct: 240 HVSYLGSSIKNDMSNSAQENGVLSDMSNTAPMRLQLNGHFPYLPYNFNLPNNLKFQPTAE 299

Query: 299 MNIQENPVDYHVSGSLEVPRPGFDT-TPGSWASTSGPCEVTLFDERLYSQ 347
           +N  ENPVDYHV+G  E PR G+D+     WASTSGPC VT+FDE+LY+Q
Sbjct: 300 INPYENPVDYHVNGGFEAPRSGYDSNNHHDWASTSGPCGVTMFDEQLYAQ 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491700|ref|XP_002281961.2| PREDICTED: myocyte-specific enhancer factor 2A homolog [Vitis vinifera] gi|297733964|emb|CBI15211.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 285/355 (80%), Gaps = 8/355 (2%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LE+T+ RQ TY+KR++GI+KKA ELSILCDI+IILLMFSPTG+P+L +G 
Sbjct: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGRPTLFHGA 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+Q+FLG S+QTIE+LTNQ
Sbjct: 61  RSDIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNLQDFLGASTQTIEELTNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           ARLLQ+QL+E+H+RL YW+NPDK++S EHL QME+SLR+SLN +R+HKEN GK +LMSLE
Sbjct: 121 ARLLQAQLTEVHKRLSYWSNPDKVDSTEHLRQMEDSLRESLNRIRVHKENFGKHQLMSLE 180

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C +QFQNG+ +P  M   ++ Q LSW+PNN+N+H++LPE+P+ L  RD+ECS  +S   Y
Sbjct: 181 CASQFQNGMHLPLIMDGVQEAQPLSWLPNNENQHLILPEEPSYLPQRDMECSADASIPGY 240

Query: 241 SGYFGPGKSSEISNS------GQDSSLLSELSGTQSLRLQLGGQCSYIPY-NVSLLND-K 292
           SGY+  GK +EI NS      GQ+ S L++LSG  +LRLQL  Q  Y P+ N++L ++ K
Sbjct: 241 SGYYSTGKQTEIGNSGQVDEQGQEGSALNQLSGNSNLRLQLSEQYLYSPFGNLNLPDEKK 300

Query: 293 FQPVSEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQ 347
            +P  EMN+Q NPVDY V+G+ E+P P +D    +W S SGPC + +FDE  +SQ
Sbjct: 301 LKPEMEMNLQGNPVDYQVNGNFEIPAPIYDNRQHTWVSASGPCSIAMFDENSFSQ 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513361|gb|AFK44742.1| unknown [Lotus japonicus]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/350 (65%), Positives = 280/350 (80%), Gaps = 4/350 (1%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LENTNGRQATYAKRK+GI+KKA+ELSILCDIDIILLMFSP+GKPS+C G+
Sbjct: 1   MGRVKLKIKRLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPSGKPSICRGR 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            S++EEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN+QEF+GTSSQ IED++N 
Sbjct: 61  HSNLEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFMGTSSQRIEDVSNH 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK-QELMSL 179
           A LLQ+Q+SE+ +RL  WT  DKI+SV  LGQMENS+R+SL  ++ HKEN+ K Q+L++L
Sbjct: 121 AGLLQNQISEIQKRLSNWTEIDKISSVYQLGQMENSVRESLKQIQTHKENIKKQQQLVTL 180

Query: 180 ECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGS 239
           +C +QF N +  PFRM  ++ LQ LSWI N D++++VLPED NL  ++DVE S SSSFGS
Sbjct: 181 QCNSQF-NEMSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGS 239

Query: 240 YSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPY-NVSLLNDKFQP-VS 297
           Y+ Y G     EIS SGQ++ +L ++S T  LRLQL GQ  Y+PY    L N K QP  +
Sbjct: 240 YASYLGSSSKLEISTSGQENCVLIDMSSTAPLRLQLSGQIPYLPYNFNLLNNLKLQPTAA 299

Query: 298 EMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLYSQ 347
           E+N  +NPVDYHV GS E PRPG+D+    WASTSGP  VT+FDE LY+Q
Sbjct: 300 EINPHKNPVDYHVDGSFEDPRPGYDSNQHGWASTSGPRAVTMFDEHLYAQ 349

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435336|ref|XP_004135451.1| PREDICTED: agamous-like MADS-box protein AGL9 homolog [Cucumis sativus]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/349 (64%), Positives = 281/349 (80%), Gaps = 15/349 (4%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LENTNGRQ+TY+KRK+GIMKKA ELSILCD+DIILLMFSPTGKP+L   K
Sbjct: 1   MGRVKLKIKRLENTNGRQSTYSKRKNGIMKKAKELSILCDVDIILLMFSPTGKPNLSCEK 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS  EEVIA+FAQ TPQER KRK+ES+++L+KTFKKLDHDVN+ + LGTSSQTIEDLT Q
Sbjct: 61  RS-FEEVIARFAQQTPQERTKRKMESIDSLRKTFKKLDHDVNIDDLLGTSSQTIEDLTGQ 119

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           A+LL++QLSE+H+RL  W NPDKIN+V+HL QME+S+R++LN +R+HK+NL K   + LE
Sbjct: 120 AKLLRTQLSEVHQRLSCWRNPDKINNVDHLSQMEDSMRETLNQVRLHKDNLQKHPPVPLE 179

Query: 181 CTTQFQNGICIPFRMGSEEQLQTL---SWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSF 237
            T   Q+G+ + F M  E+Q+Q L   SWIP ND++++VL +DPN + HRD ECS SSSF
Sbjct: 180 FTN--QDGMHLTFDMSVEQQIQQLQHFSWIP-NDSQNIVLHDDPNFVLHRDAECSASSSF 236

Query: 238 GSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPV 296
            SY GYFG G+S EISNSGQ++ +L ELS T++LR QLGGQ SY+ YNV+  ND  FQP 
Sbjct: 237 TSYPGYFGTGRSPEISNSGQENGVLPELSRTEALRPQLGGQNSYMSYNVNFFNDPTFQPA 296

Query: 297 SEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLY 345
           +EMN+  NPVDYHV+G+L       DTT  +WAS+SGPC V+L D+RL+
Sbjct: 297 AEMNLPINPVDYHVNGNL-------DTTQHNWASSSGPCAVSLLDDRLF 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478658|ref|XP_004155383.1| PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL9 homolog [Cucumis sativus]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/349 (64%), Positives = 281/349 (80%), Gaps = 15/349 (4%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LENTNGRQ+TY+KRK+GIMKKA ELSILCD+DIILLMFSPTGKP+L   K
Sbjct: 1   MGRVKLKIKRLENTNGRQSTYSKRKNGIMKKAKELSILCDVDIILLMFSPTGKPNLSCEK 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS  EEVIA+FAQ TPQER KRK+ES+++L+KTFKKLDHDVN+ + LGTSSQTIEDLT Q
Sbjct: 61  RS-FEEVIARFAQQTPQERTKRKMESIDSLRKTFKKLDHDVNIDDLLGTSSQTIEDLTGQ 119

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
           A+LL++QLSE+H+RL  W NPDKIN+V+HL QME+S+R++LN +R+HK+NL K   + LE
Sbjct: 120 AKLLRTQLSEVHQRLSCWRNPDKINNVDHLSQMEDSMRETLNQVRLHKDNLQKHPPVPLE 179

Query: 181 CTTQFQNGICIPFRMGSEEQLQTL---SWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSF 237
            T   Q+G+ + F M  E+Q+Q L   SWIP ND++++VL +DPN + HRD ECS SSSF
Sbjct: 180 FTN--QDGMHLTFDMSVEQQIQQLQHFSWIP-NDSQNIVLHDDPNFVLHRDAECSASSSF 236

Query: 238 GSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQPV 296
            SY GYFG G+S EISNSGQ++ +L ELS T++LR QLGGQ SY+ YNV+  ND  FQP 
Sbjct: 237 TSYPGYFGTGRSPEISNSGQENGVLPELSRTEALRPQLGGQNSYMSYNVNXFNDPTFQPA 296

Query: 297 SEMNIQENPVDYHVSGSLEVPRPGFDTTPGSWASTSGPCEVTLFDERLY 345
           +EMN+  NPVDYHV+G+L       DTT  +WAS+SGPC V+L D+RL+
Sbjct: 297 AEMNLPINPVDYHVNGNL-------DTTQHNWASSSGPCAVSLLDDRLF 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160541|emb|CAX16990.1| MADS1 protein [Eschscholzia californica] gi|343160543|emb|CAX16991.1| MADS1 protein [Eschscholzia californica]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 269/346 (77%), Gaps = 6/346 (1%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LENT+GRQ TY+KR+ GI+KKA ELSILCDIDI LLMFSPTGKP+LC G 
Sbjct: 1   MGRVKLKIKRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPTLCLGD 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           RS+IE+VIAKFAQLTPQERAKRKLESLEALKKTFKKL+HDVN+Q+FLGTS+QT+EDLTNQ
Sbjct: 61  RSNIEDVIAKFAQLTPQERAKRKLESLEALKKTFKKLEHDVNIQDFLGTSTQTVEDLTNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
             LLQ QLSEM  RLR WT+P+KIN+V+HL  ME S+++SLN +  HKENLGKQ+LMSLE
Sbjct: 121 RNLLQRQLSEMVERLRCWTDPEKINNVDHLNAMEQSIKESLNRIHTHKENLGKQQLMSLE 180

Query: 181 CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSY 240
           C  QFQNG+ IP  MG E+Q Q+LSWIPN+D++H++L ED +LL  RD+ECS   S  +Y
Sbjct: 181 C-AQFQNGMQIPLGMGGEQQPQSLSWIPNHDSQHLMLSEDTSLLPQRDIECSTDPSLQNY 239

Query: 241 SGYFGPGKSSEISNSGQD--SSLLSELSGTQSLRLQLGGQCSYIPYNVSLL-NDKFQPVS 297
           S Y G GK  EI NSGQD   S L + S    L LQ+GGQ  Y PY+  L+ N+K++  S
Sbjct: 240 SSYLGMGKQVEIDNSGQDGIGSSLPDFSANACLSLQIGGQFPYQPYDFDLVNNNKYKNDS 299

Query: 298 EMNIQENPVDYHVS--GSLEVPRPGFDTTPGSWASTSGPCEVTLFD 341
           EM++QE  +DY V    S   PR  +D +  +WASTSG C V +FD
Sbjct: 300 EMSLQEPRLDYQVGNINSFGPPRHRYDASDQAWASTSGQCSVPMFD 345

Source: Eschscholzia californica

Species: Eschscholzia californica

Genus: Eschscholzia

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577225|ref|XP_003556728.1| PREDICTED: agamous-like MADS-box protein AGL15-like [Glycine max]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 277/353 (78%), Gaps = 8/353 (2%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           MGRVKLKIK+LENTNGR ATYAKR++GIMKKA ELSILCDIDIILLMF+P GKPSLC G+
Sbjct: 1   MGRVKLKIKRLENTNGRPATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGR 60

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
            S+ EEVI KF QLTPQER KRKLE+LEALKKTFKKLDHDVNVQEF GTSSQTIEDL+NQ
Sbjct: 61  CSNFEEVITKFGQLTPQERTKRKLETLEALKKTFKKLDHDVNVQEFFGTSSQTIEDLSNQ 120

Query: 121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHK---ENLGK-QEL 176
           A+LLQ+Q+   H+RL +WT  DKINSV+ LG+MENSLR+SL+ +R HK   EN+ K Q+L
Sbjct: 121 AKLLQTQIFGTHKRLSHWTEFDKINSVDQLGRMENSLRESLDQIRTHKVYIENVKKQQQL 180

Query: 177 MSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSS 236
           +SL+C  Q  N + IPFRM + +QLQ LSWI N++++++VLPED N+  H+DVE S SSS
Sbjct: 181 VSLQCNNQL-NEMNIPFRM-TAQQLQPLSWIVNDNDQNIVLPEDSNMFLHKDVEGSVSSS 238

Query: 237 FGSYSGYFGPGKSSEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND-KFQP 295
           FGSY  YFG    +++S+S Q++ +LS++S    +RLQL GQ   + YN +LLN+ KFQP
Sbjct: 239 FGSYDNYFGSSIKTDMSSSTQENGVLSDMSNIAPMRLQLNGQFPCLQYNFNLLNNLKFQP 298

Query: 296 VSEMNIQENPVDYHVSGSLEVPRPGFDT-TPGSWASTSGPCEVTLFDERLYSQ 347
             E+N  EN VDYHV+   E PR  +D+     WASTSG C +T+F+E+LY+Q
Sbjct: 299 SVEINPHENHVDYHVNEGFEAPRSSYDSNNHHGWASTSGSCGITMFEEQLYAQ 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2056760	386	AGL30 "AGAMOUS-like 30" [Arabi	0.817	0.740	0.508	3.6e-78
TAIR|locus:2034949	389	AGL65 "AGAMOUS-like 65" [Arabi	0.817	0.735	0.493	4e-67
TAIR|locus:2007186	344	AGL94 "AGAMOUS-like 94" [Arabi	0.942	0.959	0.436	2.7e-61
TAIR|locus:2029386	332	AGL66 "AGAMOUS-like 66" [Arabi	0.548	0.578	0.330	3.9e-24
TAIR|locus:2030621	335	AGL104 "AGAMOUS-like 104" [Ara	0.58	0.605	0.321	1.3e-23
TAIR|locus:2029411	252	AGL67 "AGAMOUS-like 67" [Arabi	0.54	0.75	0.294	1.3e-16
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.517	0.800	0.310	1.5e-12
TAIR|locus:2057741	109	AGL33 "AGAMOUS-like 33" [Arabi	0.234	0.752	0.365	5.4e-10
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.465	0.608	0.264	7.2e-10
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.294	0.522	0.314	1e-08

TAIR|locus:2056760 AGL30 "AGAMOUS-like 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
 Identities = 155/305 (50%), Positives = 204/305 (66%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGRVKLKIKKLENTNGRQ+T+AKRK+GI+KKANE            MFSPTGK ++C G 
Sbjct:     1 MGRVKLKIKKLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAAICCGT 60

Query:    61 RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
             RSS+EEVIAKF+Q+TPQER KRK ESLE LKKTF+KLDHDVN++EF+ +S+ T+EDL+ Q
Sbjct:    61 RSSMEEVIAKFSQVTPQERTKRKFESLENLKKTFQKLDHDVNIREFIASSNSTVEDLSTQ 120

Query:   121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQE-LMSL 179
             AR+LQ+++SE+H RL YWT PDKIN+VEHLGQ+E S+R SL+ LR HKE+ G+Q+  M +
Sbjct:   121 ARILQARISEIHGRLSYWTEPDKINNVEHLGQLEISIRQSLDQLRAHKEHFGQQQQAMQI 180

Query:   180 E--------CTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVEC 231
             E         T   Q+GI IP     E+QLQ++SWI N++  ++V  E+ N +  R+VEC
Sbjct:   181 ENANFVKDWSTCSMQDGIQIPL----EQQLQSMSWILNSNTTNIVT-EEHNSIPQREVEC 235

Query:   232 XXXXXXXXXXXXXXXXXXXEISNSGQDSSLLSELSGTQ-----SLRLQLGGQCSYIPYNV 286
                                E++  GQ++S L EL+  Q     S + Q     +   YN 
Sbjct:   236 SASSSFGSYPGYFGTGKSPEMTIPGQETSFLDELNTGQLKQDTSSQQQFTNNNNITAYNP 295

Query:   287 SLLND 291
             +L ND
Sbjct:   296 NLHND 300

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2034949 AGL65 "AGAMOUS-like 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 145/294 (49%), Positives = 189/294 (64%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGRVKLKIK+LE+T+ RQ TY KRK+GI+KKA E            MFSPTG+ +  +G+
Sbjct:     1 MGRVKLKIKRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRATAFHGE 60

Query:    61 RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
              S IEEVI+KFAQLTPQER KRKLESLEALKKTFKKLDHDVN+ +FLG  +QTIE L+NQ
Sbjct:    61 HSCIEEVISKFAQLTPQERTKRKLESLEALKKTFKKLDHDVNIHDFLGARNQTIEGLSNQ 120

Query:   121 ARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLE 180
               + Q+QL E HRRL  WTN D+I + EHL  +E SLR S+  +++HKE+  K +L+ +E
Sbjct:   121 VAIYQAQLMECHRRLSCWTNIDRIENTEHLDLLEESLRKSIERIQIHKEHYRKNQLLPIE 180

Query:   181 C-TTQFQNGICIPFRMGSEEQLQ---TLSWIPNNDNRHMVLPEDPNLLSHRDVECXXXXX 236
             C TTQF +GI +P  MG    +Q   ++SW+P+ND++  +LP D + L HR+++      
Sbjct:   181 CATTQFHSGIQLPMAMGGNSSMQEAHSMSWLPDNDHQQTILPGDSSFLPHREMDGSIPVY 240

Query:   237 XXXXXXXXXXXXXXEISNSGQDSSLLSELSGTQSLRLQ-LGGQCSY-IPYNVSL 288
                             SN GQ    L E  G   L LQ LG + SY  P+  +L
Sbjct:   241 SSCFFESTKPEDQI-CSNPGQQFEQL-EQQGNGCLGLQQLGEEYSYPTPFGTTL 292

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

TAIR|locus:2007186 AGL94 "AGAMOUS-like 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 155/355 (43%), Positives = 210/355 (59%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGRVKLKIKKL+N NGRQ TY KR+HGIMKKA E            MFSP GK S+C GK
Sbjct:     1 MGRVKLKIKKLQNMNGRQCTYTKRRHGIMKKAKELSILCDIDVVLLMFSPMGKASICIGK 60

Query:    61 RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGT-SSQTIEDLTN 119
              S I EVIAKFAQL+PQERAKRKLE+LEAL+KTF K +HD+++ +FL   S+ T+E L+ 
Sbjct:    61 HS-IGEVIAKFAQLSPQERAKRKLENLEALRKTFMKANHDIDISKFLDRISTPTVEVLSE 119

Query:   120 QARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK---QEL 176
             + R LQ+QLS++H RL YWT+ D I+SV+ L Q+E+SLR SL  +   K ++ +   Q+L
Sbjct:   120 KIRFLQTQLSDIHTRLSYWTDVDNIDSVDVLQQLEHSLRQSLAQIYGRKASMPQRQQQQL 179

Query:   177 MSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPE-DPNLLSH---RDVECX 232
             MS +C  Q Q  I I F M  E+QL+  SW+  ++N ++ + E DPNL  H   +D+ C 
Sbjct:   180 MSSQCKNQLQTEIDIDFGMEMEQQLENFSWVRTDENMNVPIEEEDPNLQLHHMYKDITCS 239

Query:   233 XXXXXXXXXXXXXXXXXXEISNSGQDSSLLSELSGTQSLRLQLGGQCSYIPYNVSLLND- 291
                               +I    +  S+     GT +   Q   Q S    N+S LND 
Sbjct:   240 ASSALGNYSGLFSKSS--DILQKLETGSI----PGTSADPNQ---QFS----NLSFLNDQ 286

Query:   292 KFQPVSEMNIQENPVDYHVSGSLEVP-RPGFDTTPGSWASTSGPCEVTLFDERLY 345
             K + ++E N+  +P DY+VS  LE   +P         +S + P  V +FD+ LY
Sbjct:   287 KLKQLAEWNLLGSPADYYVSQILEASYKPQIGGKNNGASSETLPY-VAVFDDPLY 340

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2029386 AGL66 "AGAMOUS-like 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 69/209 (33%), Positives = 115/209 (55%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGRVKL+IK++ENT  RQ T++KR++G++KKA E            MFSP+ + SL +GK
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query:    61 RSSIEEVIAKFAQLTPQER---------AKRK-LESLEALKKTFKKL--DHDVNVQEFLG 108
              + IE+V +++  L+ QER         ++R   +S E L +T ++L  ++D+ +Q    
Sbjct:    61 -TRIEDVFSRYINLSDQERENALVFPDQSRRPDFQSKEYLLRTLQQLKAENDIALQLTNP 119

Query:   109 TS-SQTIEDLTNQARLLQSQLSEMHRRLR-YWTNPDKINSVEHLGQMENSLRDSLNHLRM 166
             T+ +  +E+L ++   LQ QL      LR Y  +P +  ++E     E  L D+L  +  
Sbjct:   120 TAINSDVEELEHEVYKLQQQLLMAEEELRKYEPDPIRFTTMEEYETCEKQLMDTLTRVNQ 179

Query:   167 HKEN-LGKQELMSLECTT-QFQNGICIPF 193
              +E+ L + +L S E +  Q Q  +  PF
Sbjct:   180 RREHILSQDQLSSYEASALQQQQSMGGPF 208

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2030621 AGL104 "AGAMOUS-like 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 72/224 (32%), Positives = 116/224 (51%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGRVKL+IK++ENT  RQ T++KR++G++KKA E            MFSP+ + SL +GK
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query:    61 RSSIEEVIAKFAQLTPQERAK--------RK--LESLEALKKTFKKL--DHDVNVQEFLG 108
              + IE+V ++F  L  QER          R+  +++ E L +  ++L  ++D+ +Q    
Sbjct:    61 -TRIEDVFSRFINLPKQERESALYFPDQNRRPDIQNKECLLRILQQLKTENDIALQVTNP 119

Query:   109 TS-SQTIEDLTNQARLLQSQLSEMHRRLR-YWTNPDKINSVEHLGQMENSLRDSLNHLRM 166
              + +  +E+L ++   LQ QL      LR Y  +P +  ++E     E  L D+L H+  
Sbjct:   120 AAINSDVEELEHEVCRLQQQLQMAEEELRRYEPDPIRFTTMEEYEVSEKQLLDTLTHVVQ 179

Query:   167 HKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNN 210
              +++L    L S E +T  Q  I  PF     E      W+P N
Sbjct:   180 RRDHLMSNHLSSYEASTM-QPNIGGPFVNDVVE-----GWLPEN 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009555 "pollen development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029411 AGL67 "AGAMOUS-like 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 61/207 (29%), Positives = 112/207 (54%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGRVKL++K++E +  RQ T++KRK G++KKA E            MFSP+ +  L +G+
Sbjct:     1 MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query:    61 RSSIEEVIAKFAQLTPQER---------AKRK-LESLEALKKTFKKL--DHDVNVQ---E 105
              + IE+V+A++  L  QER         +KR+ +++ E L +T +KL  + D+ +Q    
Sbjct:    61 -TRIEDVLARYINLPDQERENAIVFPDQSKRQGIQNKEYLLRTLEKLKIEDDMALQINEP 119

Query:   106 FLGTSSQTIEDLTNQARLLQSQLSEMHRRLR-YWTNPDKINSVEHLGQMENSLRDSLNHL 164
                 ++  +E+L  +   LQ QL      LR +  +P ++ S+E +   E +L ++L  +
Sbjct:   120 RPEATNSNVEELEQEVCRLQQQLQISEEELRKFEPDPMRLTSMEEIEACEANLINTLTRV 179

Query:   165 RMHKENLGKQELMSLECTTQFQNGICI 191
                +E+L ++   + +   Q  +GI +
Sbjct:   180 VQRREHLLRKSCEA-QSNQQSMDGILL 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 171 (65.3 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 64/206 (31%), Positives = 96/206 (46%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGK------P 54
             MGR K++IKK+EN   RQ TY+KR++GI KKA+E            MFS TGK      P
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    55 SLCNGKR-SSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQT 113
             S    K     +  +      +  ER K   E+++ LK T  KL  ++  Q  LG     
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMK---ETMKKLKDTNNKLRREIR-QRVLGEDFDG 116

Query:   114 IE--DLTNQARLLQSQLSEMHRRLRYW---TNPDKINS-VEHLGQMENSLRDSLNHLRMH 167
             ++  DLT+  + +Q  L+ +  R +Y    T  D     V +L Q   +LR  L++  +H
Sbjct:   117 LDMNDLTSLEQHMQDSLTLVRER-KYHVIKTQTDTCRKRVRNLEQRNGNLR--LDYETIH 173

Query:   168 ----KENLGKQELMSLECTTQFQNGI 189
                 K + G+ E    E    + NG+
Sbjct:   174 QLDKKYDTGENE-GDYESVVAYSNGV 198

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2057741 AGL33 "AGAMOUS-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGR KLK+K++E+   R + ++KRK G+ KKA E            + SPT KP++ N +
Sbjct:    17 MGRKKLKLKRIESLKERSSKFSKRKKGLFKKAEEVALLCDSDIMLIVVSPTEKPTVFNTR 76

Query:    61 RSSIEEVIAKFAQLTPQERAKR 82
               S   ++ +F  L+ QER +R
Sbjct:    77 SRSFHTILERFCMLSLQEREER 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 45/170 (26%), Positives = 86/170 (50%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
             MGR K++IK++EN N RQ T++KR+ G++KKA E            +FS +GK  L    
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGK--LFEYS 58

Query:    61 RSSIEEVIAKFA--QLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLT 118
              + +++ ++++   Q +   +A+     ++ LK    KL       +  G +  T ++L 
Sbjct:    59 STGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQ 118

Query:   119 N-QARLLQSQLSEMHRRLRYWTNP-DKINSVEHLGQMEN-SLRDSLNHLR 165
             + + +L  + ++   R+ R  TN  ++    E   ++EN +LR  +  LR
Sbjct:   119 SLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELR 168

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 33/105 (31%), Positives = 60/105 (57%)

Query:     1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKP-SLCNG 59
             MGR K++IK++ENT+ RQ TY+KRK+GI+KKA E            ++  +GK    C+ 
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    60 KRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQ 104
             K + I+ ++ ++ +L+  +    K E+L+      KK +  + ++
Sbjct:    61 KTNLID-MLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIE 104

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII0760 hypothetical protein (363 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
smart00432	59	smart00432, MADS, MADS domain	1e-23
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-23
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	4e-23
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	4e-22
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-14
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	7e-06

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 91.8 bits (229), Expect = 1e-23
 Identities = 29/53 (54%), Positives = 44/53 (83%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP 54
          GR K++IK++EN   RQ T++KR++G+ KKA+ELS+LCD ++ L++FSPTGK 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKL 53

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 91.6 bits (228), Expect = 3e-23
 Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 61
          GR K+KIK++EN   R  T++KR+ G+ KKA+ELS LC  ++ ++++SP+GK  +     
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVF-WPS 59

Query: 62 SSIEEVIAKFAQLTPQERAKR 82
          S +E VI++F  L+  ER K+
Sbjct: 60 SEVEGVISRFEVLSALERKKK 80

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 90.3 bits (225), Expect = 4e-23
 Identities = 27/53 (50%), Positives = 44/53 (83%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP 54
          GR K++IK++EN   RQ T++KR++G+ KKA+ELS+LCD ++ +++FSP+GK 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKL 53

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 88.4 bits (220), Expect = 4e-22
 Identities = 30/75 (40%), Positives = 56/75 (74%), Gaps = 4/75 (5%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCNGK 60
          GR K++IK++EN+  RQ T++KR++G++KKA+ELS+LCD ++ L++FS +GK     +  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-- 58

Query: 61 RSSIEEVIAKFAQLT 75
            S+E++I ++ + +
Sbjct: 59 -PSMEKIIERYQKTS 72

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 24/45 (53%), Positives = 38/45 (84%)

Query: 9  KKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
          K++EN + RQ T++KR++GI KKA+ELS+LCD ++ +++FS TGK
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGK 45

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
           +   K+ I  + N   R  T++KRKHGI KKA ELS+L   +++LL+ S  G 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGL 133

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.95
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.94
smart00432	59	MADS MADS domain.	99.93
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.92
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.86
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.71
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.39
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.3
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.86
PRK04098	158	sec-independent translocase; Provisional	82.08

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.5e-34  Score=261.37  Aligned_cols=176  Identities=30%  Similarity=0.464  Sum_probs=124.9

Q ss_pred             CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHH
Q 018825            1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERA   80 (350)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~   80 (350)
                      |||+||+|+||+|+++|||||+|||+||||||+||||||||+||||||||+|++|+||+++.+|.+|++||...+..++.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999998545599999999998877665


Q ss_pred             hhhHHHHHHHHHH-HHhhhhhhhhHhHhcCCcchHHHHHHHHHHHHHHHHHHh---HhhcccCCCC-CCCCH-HHHHHHH
Q 018825           81 KRKLESLEALKKT-FKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMH---RRLRYWTNPD-KINSV-EHLGQME  154 (350)
Q Consensus        81 k~~~~~le~L~k~-~kKLd~e~~i~~~~~~~~~~vE~L~~ei~~Lq~qleelq---~rlr~~~ged-~~LSv-eEL~qLE  154 (350)
                      +........+... +.++........      .....+......+....+.+.   ...+.+.+++ ..+++ ++|..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~  154 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEE------LKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE  154 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhh------ccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence            5433332222211 111110000000      000112223333333333333   3355666666 66777 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hhhhh
Q 018825          155 NSLRDSLNHLRMHKENLGKQELM-SLECT  182 (350)
Q Consensus       155 ~qLe~sL~~IR~RK~qL~~~ql~-~Lq~k  182 (350)
                      .+|+.++..+|.++...+.+++. .++.+
T Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (195)
T KOG0014|consen  155 SQLESSLHNSRSSKSKPLSDSNFQVLQEK  183 (195)
T ss_pred             hHHHHhhcCCCCCCCcCCcchhhhhhccc
Confidence            99999999999999888777765 44433

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.95  E-value=8.9e-30  Score=198.48  Aligned_cols=73  Identities=41%  Similarity=0.793  Sum_probs=70.4

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhCh
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTP   76 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~   76 (350)
                      ||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|+++.|++  +++++||+||.+.+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s--~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS--PSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC--CCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999987  788999999998764

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.94  E-value=2.4e-28  Score=193.12  Aligned_cols=79  Identities=42%  Similarity=0.741  Sum_probs=73.7

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHh
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAK   81 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k   81 (350)
                      ||+||+|++|+|+.+|+|||+|||.||+|||+||||||||+||+|||||+|+++.||++.. +..||+||...+..++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhhhc
Confidence            8999999999999999999999999999999999999999999999999999999997433 999999999998876654

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.93  E-value=8.9e-27  Score=172.14  Aligned_cols=58  Identities=50%  Similarity=0.883  Sum_probs=57.1

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCC
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG   59 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s   59 (350)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||||||||+|+++.||+
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999999986

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.92  E-value=3e-26  Score=169.41  Aligned_cols=58  Identities=47%  Similarity=0.836  Sum_probs=57.0

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCC
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG   59 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s   59 (350)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|+++.||+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999986

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.86  E-value=2e-24  Score=154.79  Aligned_cols=51  Identities=47%  Similarity=0.827  Sum_probs=46.3

Q ss_pred             EEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCC
Q 018825            9 KKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG   59 (350)
Q Consensus         9 k~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s   59 (350)
                      |+|+|+..|++||+|||.||+|||.|||+||||+||||||||+|+++.|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999864

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.71  E-value=1.2e-18  Score=163.35  Aligned_cols=66  Identities=44%  Similarity=0.606  Sum_probs=61.9

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHH
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIA   69 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLe   69 (350)
                      ||+||+|++|||+..|.|||+|||.||||||+|||||+|.+|-|+|.|.+|.+|.|+.  +..+.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT--pKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--PKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc--cccccccc
Confidence            7999999999999999999999999999999999999999999999999999999987  66666653

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.39  E-value=1.1e-12  Score=107.22  Aligned_cols=85  Identities=20%  Similarity=0.252  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhccc
Q 018825          113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICI  191 (350)
Q Consensus       113 ~vE~L~~ei~~Lq~qleelq~rlr~~~ged-~~LSveEL~qLE~qLe~sL~~IR~RK~qL~~~ql~~Lq~keq~~~~~~~  191 (350)
                      .++.+..++..|+.+++.++..+|++.|++ +.||++||.+||++|+.+|.+||+||.+++.+++..|++|+..+.+.|.
T Consensus        13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~   92 (100)
T PF01486_consen   13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN   92 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999 8899999999999999999999999999999999999999988888777


Q ss_pred             cccCCh
Q 018825          192 PFRMGS  197 (350)
Q Consensus       192 ~l~~~~  197 (350)
                      .|+.+.
T Consensus        93 ~L~~~~   98 (100)
T PF01486_consen   93 QLRQKI   98 (100)
T ss_pred             HHHHHh
Confidence            666543

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.30  E-value=4.9e-13  Score=131.07  Aligned_cols=65  Identities=37%  Similarity=0.528  Sum_probs=60.6

Q ss_pred             CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHH
Q 018825            1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEV   67 (350)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~V   67 (350)
                      |||+||.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|..|+++.|+.  +..+.|
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t--p~~e~v  145 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT--PKLESV  145 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC--Cccccc
Confidence            79999999999999999999999999999999999999999999999999999999987  544444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.86  E-value=5.4  Score=35.25  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018825          111 SQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKE  169 (350)
Q Consensus       111 ~~~vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~  169 (350)
                      ....+++...+..|..++..++.++..+.+.....|.+|...+++......+..+.||.
T Consensus       108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr  166 (169)
T PF07106_consen  108 EPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR  166 (169)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888889999999999999988887755668999999999999999999999985

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK04098 sec-independent translocase; Provisional

Probab=82.08  E-value=3.7  Score=36.41  Aligned_cols=82  Identities=13%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             ceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHhhhHHHHHHHHHHHHhhhhhhhhHhHhcCCcchHHHHHHHH
Q 018825           42 DIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA  121 (350)
Q Consensus        42 eVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k~~~~~le~L~k~~kKLd~e~~i~~~~~~~~~~vE~L~~ei  121 (350)
                      =||||||+| +||++..   ..+-+.|.+|++.....+..               ++.+.           .+++++.+.
T Consensus        14 vVaLlvfGP-~KLP~~~---r~lGk~ir~~K~~~~~~k~~---------------l~~Ei-----------~~~elk~e~   63 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAM---VDIAKFFKAVKKTINDAKST---------------LDKEI-----------NIEEIKEEA   63 (158)
T ss_pred             HHHHhhcCc-hHHHHHH---HHHHHHHHHHHHHHHHHHHH---------------HHHHH-----------hhHHHHHHH
Confidence            378999998 4776554   46666677766653321110               11111           234667777


Q ss_pred             HHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHH
Q 018825          122 RLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRD  159 (350)
Q Consensus       122 ~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~  159 (350)
                      .+.+..++.....+|-      .+++++|..+-.-+..
T Consensus        64 ~k~k~~l~~~~~~l~~------~~~~eel~~~~~~~~~   95 (158)
T PRK04098         64 LKYKKEFESAVESLKK------KLKFEELDDLKITAEN   95 (158)
T ss_pred             HHHHHHHHHHHHHHHh------ccChHHHHHHhhhhhh
Confidence            7777777766665552      3677777766544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-04
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		4e-04

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
          MGR K++I ++ +   RQ T+ KRK G+MKKA E            +F+   +  L    
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANR--LFQYA 58
Query: 61 RSSIEEVIAKFAQLTPQERAKRKLESLEALKK 92
           + ++ V+ K+ + +    ++   + LE LK+
Sbjct: 59 STDMDRVLLKYTEYSEPHESRTNTDILETLKR 90

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 3  RVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTG 52
          R K++IK +EN   R  T++KRKHGIMKKA E            + S TG
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETG 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-24
1hbx_A	92	SRF, serum response factor; gene regulation, trans	7e-23
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-22
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	5e-22
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 94.8 bits (236), Expect = 1e-24
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA ELS+LCD +I L++F+ + K  L     
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SSIEEVIAKFAQLTPQERAKRKLESLEALKK 92
          + +++V+ K+ +      ++   + +EAL K
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVEALNK 89

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 90.2 bits (224), Expect = 7e-23
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           GRVK+K++ ++N   R  T++KRK GIMKKA ELS L    ++LL+ S TG   +    
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH--VYTFA 67

Query: 61 RSSIEEVIAKFAQLTPQERA 80
             ++ +I         +  
Sbjct: 68 TRKLQPMITSETGKALIQTC 87

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 89.1 bits (221), Expect = 3e-22
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
            R K++IK +EN   R  T++KRKHGIMKKA ELS+L    ++LL+ S TG   +    
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL--VYTFS 73

Query: 61 RSSIEEVIAKFAQLTPQER 79
              E ++ +       + 
Sbjct: 74 TPKFEPIVTQQEGRNLIQA 92

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 88.4 bits (219), Expect = 5e-22
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK 60
           GRVK+K++ ++N   R  T++KRK GIMKKA ELS L    ++LL+ S TG   +    
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH--VYTFA 66

Query: 61 RSSIEEVIAKFAQLTPQERA 80
             ++ +I         +  
Sbjct: 67 TRKLQPMITSETGKALIQTC 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA ELS+LCD +I L++F+ + K  L     
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SSIEEVIAKFAQLTPQERA 80
          + +++V+ K+ +      +
Sbjct: 59 TDMDKVLLKYTEYNEPHES 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 57/241 (23%)

Query: 87  LEALKKTFKKLDHDVN-VQEFLGT--SSQTIEDLTNQA-RLLQSQLSEMHRRLRYWTNPD 142
           L   +  F   + D   VQ+   +  S + I+ +      +  +       RL +WT   
Sbjct: 22  LSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT------LRL-FWTLLS 73

Query: 143 K-INSVEHLGQMENSLRDSLNHL--RMHKENLGKQELMSL--ECTTQFQNG--ICIPFRM 195
           K    V+    +E  LR +   L   +  E      +  +  E   +  N   +   + +
Sbjct: 74  KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 196 GSEEQLQTL-SWIPNNDNRHMVLPEDPNLLSHRDVECSGSSSFGSYSGYFGPGKSSEISN 254
              +    L   +         L    N+L                 G  G GK+    +
Sbjct: 132 SRLQPYLKLRQALLE-------LRPAKNVLID---------------GVLGSGKTWVALD 169

Query: 255 SGQDSSLLSELSG------------TQSLRLQLGGQCSYIPYNVSLLNDKFQPVSEMNIQ 302
                 +  ++               +++   L      I  N +  +D    + ++ I 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIH 228

Query: 303 E 303
            
Sbjct: 229 S 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 80/301 (26%)

Query: 57  CNGKRSSIEEVIAKFAQL--TPQERAKR---KLESLEALKKTFKKLDHD--VNVQEFLGT 109
                      I +  +L    Q  AK    +L+    L++   +L     V +   LG+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 110 SSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLR----------- 158
                  +     L      +M  ++ +W N    NS E + +M   L            
Sbjct: 162 GKTW---VALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 159 DSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLP 218
           D  +++++   ++ + EL  L  +  ++N + +         L          N   V  
Sbjct: 218 DHSSNIKLRIHSI-QAELRRLLKSKPYENCLLV---------L---------LN---V-- 253

Query: 219 EDPNLLSHRDVECSG--SSSFGSYSGYFGPGKSSEIS--------NSGQDSSLLSELSGT 268
           ++    +  ++ C    ++ F   + +     ++ IS           +  SLL +    
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 269 --QSLRLQLGGQCSYIPYNVSLL------------------NDKFQPVSEMNIQE-NPVD 307
             Q L  ++    +  P  +S++                   DK   + E ++    P +
Sbjct: 314 RPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 308 Y 308
           Y
Sbjct: 371 Y 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 42/276 (15%), Positives = 79/276 (28%), Gaps = 91/276 (32%)

Query: 5   KLKIKKLENTNGRQATYAKRKHGIMKKA-NELSIL-CDIDIILLMFSPTGKPSL--CNGK 60
            +   KL      +++    +    +K  + LS+      I      PT   SL   +  
Sbjct: 349 HVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHI------PTILLSLIWFDVI 400

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           +S +  V+ K          K  L     ++K  K+             S+ +I  +  +
Sbjct: 401 KSDVMVVVNKLH--------KYSL-----VEKQPKE-------------STISIPSIYLE 434

Query: 121 ARLLQSQLSEMHRRL--RYWTNPDKINSVEHLGQMENSLRDS--LNHLRMHKENLGKQEL 176
            ++       +HR +   Y  N  K    + L        D    +H+  H +N+   E 
Sbjct: 435 LKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYL---DQYFYSHIGHHLKNIEHPER 489

Query: 177 MSLECTTQFQNGICIPFRMGSEEQLQTLSWIPNNDNRHMVLPEDPNLLSHRDVECSGSSS 236
           M+L             FRM          ++                + H     + S S
Sbjct: 490 MTL-------------FRM----VFLDFRFLEQK-------------IRHDSTAWNASGS 519

Query: 237 -------FGSYSGYFGPGKSSEISNSGQDSSLLSEL 265
                     Y  Y          N  +   L++ +
Sbjct: 520 ILNTLQQLKFYKPYI-------CDNDPKYERLVNAI 548

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.98
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.97
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.96
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.96

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.2e-35  Score=235.11  Aligned_cols=88  Identities=34%  Similarity=0.641  Sum_probs=79.3

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHh
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAK   81 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k   81 (350)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|++  ++|++||+||.++++..+.+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999986  78999999999998766555


Q ss_pred             hhHHHHHHHH
Q 018825           82 RKLESLEALK   91 (350)
Q Consensus        82 ~~~~~le~L~   91 (350)
                      ...+..++|+
T Consensus        79 ~~~d~~e~~~   88 (90)
T 3p57_A           79 TNSDIVEALN   88 (90)
T ss_dssp             CHHHHHHHHH
T ss_pred             ChHhHHHHHh
Confidence            5555455443

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.98  E-value=6.7e-35  Score=225.28  Aligned_cols=73  Identities=37%  Similarity=0.698  Sum_probs=69.4

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhCh
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTP   76 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~   76 (350)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|++  ++|++||+||.+.++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999986  789999999998864

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.97  E-value=4.8e-33  Score=223.83  Aligned_cols=75  Identities=37%  Similarity=0.500  Sum_probs=70.9

Q ss_pred             CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChH
Q 018825            1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQ   77 (350)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~   77 (350)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++  ++|+.||+||......
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G~~lw   90 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRNLI   90 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhCCcHH
Confidence            89999999999999999999999999999999999999999999999999999999987  7899999999775443

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.96  E-value=1.3e-32  Score=218.58  Aligned_cols=71  Identities=38%  Similarity=0.516  Sum_probs=67.9

Q ss_pred             CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhh
Q 018825            1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQ   73 (350)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~   73 (350)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++  ++|+.||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999987  899999996643

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.96  E-value=4e-32  Score=219.79  Aligned_cols=70  Identities=39%  Similarity=0.528  Sum_probs=67.2

Q ss_pred             CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHh
Q 018825            1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFA   72 (350)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~   72 (350)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++  ++|+.||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999986  79999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-21
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-20
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	3e-20

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (210), Expect = 1e-21
 Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA ELS+LCD +I L++F+ + K        
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58

Query: 62 SSIEEVIAKFAQ 73
          + +++V+ K+ +
Sbjct: 59 TDMDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.7 bits (202), Expect = 3e-20
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKR 61
           R K++IK +EN   R  T++KRKHGIMKKA ELS+L    ++LL+ S TG     +   
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS--T 60

Query: 62 SSIEEVIAKF 71
             E ++ + 
Sbjct: 61 PKFEPIVTQQ 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (202), Expect = 3e-20
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP-SLCNG 59
           GRVK+K++ ++N   R  T++KRK GIMKKA ELS L    ++LL+ S TG   +    
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT- 60

Query: 60 KRSSIEEVIAKF 71
              ++ +I   
Sbjct: 61 --RKLQPMITSE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.97
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.96
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.96

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-34  Score=216.22  Aligned_cols=71  Identities=38%  Similarity=0.717  Sum_probs=68.5

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhh
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQL   74 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~   74 (350)
                      ||+||+|++|||+..|+|||+|||+||||||+||||||||+||||||||+|++++|++  +++++||+||.++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s--~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999986  7899999999763

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-32  Score=211.22  Aligned_cols=72  Identities=38%  Similarity=0.499  Sum_probs=69.3

Q ss_pred             CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhh
Q 018825            1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQL   74 (350)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~   74 (350)
                      +||+||+|++|||+..|+|||+|||.||||||+||||||||+||||||||+|++|.|++  ++++.||+||...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s--~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC--GGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999986  8999999999754

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-32  Score=212.20  Aligned_cols=76  Identities=37%  Similarity=0.504  Sum_probs=71.6

Q ss_pred             CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHH
Q 018825            2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQER   79 (350)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er   79 (350)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|++  ++|+.||+||...+..++
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s--p~v~~vl~r~~~~~~~~~   78 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRNLIQA   78 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC--CCHHHHHHHHhcccHHHH
Confidence            8999999999999999999999999999999999999999999999999999999976  899999999998765443