Citrus Sinensis ID: 018829
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.894 | 0.544 | 0.674 | 1e-118 | |
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.837 | 0.699 | 0.679 | 1e-114 | |
| 225470035 | 384 | PREDICTED: uncharacterized protein LOC10 | 0.84 | 0.765 | 0.688 | 1e-113 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.877 | 0.704 | 0.639 | 1e-109 | |
| 356567802 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.865 | 0.706 | 0.590 | 2e-99 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.868 | 0.624 | 0.596 | 1e-98 | |
| 357505165 | 475 | hypothetical protein MTR_7g055720 [Medic | 0.874 | 0.644 | 0.589 | 6e-98 | |
| 388500938 | 474 | unknown [Medicago truncatula] | 0.874 | 0.645 | 0.589 | 6e-98 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.811 | 0.592 | 0.551 | 7e-83 | |
| 42566738 | 481 | P-loop containing nucleoside triphosphat | 0.811 | 0.590 | 0.525 | 2e-77 |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/316 (67%), Positives = 246/316 (77%), Gaps = 3/316 (0%)
Query: 38 EGSRDSWDSL---VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVG 94
EGSR L +Q++ +REVLQSYDQL+ R SL + K+KILSYTPG W+ENV
Sbjct: 84 EGSRIPSSFLELQANQKKASTAYREVLQSYDQLKDRSKSLEEGKSKILSYTPGGWMENVI 143
Query: 95 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154
GM LSD+DVP TT LL+IGPKGSGKSSL+NRISKVFE+DKFASERAQV+YNSS DGTYF
Sbjct: 144 GMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDDKFASERAQVSYNSSAADGTYF 203
Query: 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 214
LQEY IPR S+SF LYDTR LS D+ D+ NM+K WI +GV H EL+IR SD+S LRN+M+
Sbjct: 204 LQEYMIPRSSSSFCLYDTRGLSYDSYDSANMLKNWITKGVHHRELIIRPSDNSHLRNQMK 263
Query: 215 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 274
CKA GC+ R V FVIFVVDGLAVLKSM+ D K+Y Q++A TF+CPY+SF DD
Sbjct: 264 CKARGNGCQSKETRMVTFVIFVVDGLAVLKSMDNLVDEGKKYTQMIAKTFDCPYISFNDD 323
Query: 275 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 334
KPVVVVTHGDLLSL DRAR+R +LGELLGIPPAKQIFDIPES DP EL IV+ML Y LE
Sbjct: 324 KPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAKQIFDIPESHDPVTELTIVNMLHYSLE 383
Query: 335 HADRNLSCKSCARNKV 350
HAD+NL K KV
Sbjct: 384 HADKNLPHKRQIAKKV 399
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 233/293 (79%)
Query: 48 VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT 107
+QR++ F+E+LQSYDQLR+R SL +AK+KILSYTPG W E VGGM LSDY+VPKTT
Sbjct: 69 ANQRKKWKAFKELLQSYDQLRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTT 128
Query: 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 167
+LLL+GP+GSGKSSLVNRISKVF++DKFA ERAQV+YN S G+GTYFLQEY IP S SF
Sbjct: 129 TLLLVGPRGSGKSSLVNRISKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSF 188
Query: 168 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227
LYDTR D++ DNI M+K W+ GV HGEL +R+ D SSLR RM+CK G +
Sbjct: 189 CLYDTRGFFDNSYDNIEMLKYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKN 248
Query: 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLS 287
R VNFVIFVV+GLAVLKSM + + QY ++A+ FNCPY SF+DDKPVVVVTHGDLLS
Sbjct: 249 RTVNFVIFVVNGLAVLKSMGSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLS 308
Query: 288 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 340
L+DR RIR +LGELLGIPPAKQIFDIPES DP EL I+DMLRY LEHAD NL
Sbjct: 309 LSDRTRIRVHLGELLGIPPAKQIFDIPESCDPVTELTIIDMLRYSLEHADNNL 361
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera] gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/295 (68%), Positives = 235/295 (79%), Gaps = 1/295 (0%)
Query: 50 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 109
QRRR V+ ++LQSYD +R R +L AK++ILSYTPGAWIE GGM SDY+VP+TTSL
Sbjct: 28 QRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSL 87
Query: 110 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 169
+L+GPKGSGKSSL+N+IS+VFE+DKFA ERAQV+YN SVGDGTYFLQEY IPRGS SF L
Sbjct: 88 ILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCL 147
Query: 170 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229
YDTR LSD +SDN+ M+K WI +GVRHGEL IR SDS S+R RM+CKA + G S R
Sbjct: 148 YDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRL 207
Query: 230 VNFVIFVVDGLAVLKSMEGDSDVEKQ-YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSL 288
VNFVIFVV+GL+VLKS++ D Q Y Q +A F CPYLSFRDD PVVVVTHGDLLSL
Sbjct: 208 VNFVIFVVNGLSVLKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSL 267
Query: 289 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 343
+DRAR+R +LGE LGI P KQIFDIPES EL I+DMLRY LEHADRNL CK
Sbjct: 268 SDRARVRVHLGEHLGISPGKQIFDIPESCGKATELTIIDMLRYSLEHADRNLPCK 322
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 239/308 (77%), Gaps = 1/308 (0%)
Query: 36 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGG 95
+ E S + D + + RR+ V RE+++SYDQLR R +L AK KILSY+PGAWIE VGG
Sbjct: 67 ESEYSSAALDVDICRMRRNRVHREIIESYDQLRIRSENLNQAKQKILSYSPGAWIEQVGG 126
Query: 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155
M LSDYD+P+TTSL+LIGPKGSGKSSL+NRISKVFE D FA ERAQV+ NSS DGT+FL
Sbjct: 127 MKLSDYDIPQTTSLILIGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFL 186
Query: 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 215
EY I R S SF LYDTR LS+D SDNI M+K W+ +GV HG+LV R+SD+SSL NRMRC
Sbjct: 187 HEYMILRKSKSFCLYDTRGLSNDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRC 246
Query: 216 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 275
KA + V+R +NFVIFVVDGL+VLKS++GD D +K Y++++ T FNCPYLS+ DDK
Sbjct: 247 KARQSFPRSRVVRIINFVIFVVDGLSVLKSIDGD-DKQKDYDRVITTAFNCPYLSYGDDK 305
Query: 276 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 335
PVVV+THGDLLS + R+R +LG LLGIP KQIFDIP+ DP EL I+DML YCLEH
Sbjct: 306 PVVVLTHGDLLSFAENVRVRGHLGNLLGIPSTKQIFDIPDRYDPVTELTIIDMLHYCLEH 365
Query: 336 ADRNLSCK 343
AD+NL K
Sbjct: 366 ADKNLPPK 373
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/305 (59%), Positives = 226/305 (74%), Gaps = 2/305 (0%)
Query: 48 VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT 107
V++RRR ++E+LQ D+L+ L K KIL Y PGAWIE GG+ +SDYDVPKTT
Sbjct: 70 VNERRRVINYQEILQCCDELKIHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVPKTT 129
Query: 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 167
LLL+GP+GSGKSSL+NRISKV E+D+FA RAQ +YNS +GDGT FLQEY IPR SNS
Sbjct: 130 CLLLVGPRGSGKSSLINRISKVVEDDRFAPARAQESYNSLLGDGTSFLQEYMIPRYSNSI 189
Query: 168 SLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225
LYDTRSLSD++ +NI M+K W+ +GV HGELV+R++D+ LR ++ KAHK G S
Sbjct: 190 CLYDTRSLSDNSEKDENIRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGYLSS 249
Query: 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 285
RKVNFVI+VV+GL VLK+ME D +E Q Q + +TFNCP+LSF+DDKPV+V THGDL
Sbjct: 250 KTRKVNFVIYVVNGLLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTHGDL 309
Query: 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSC 345
LS ++RA +R +LG LLGIPP KQIFDIP+ P E I+ MLRY L HADR+ +S
Sbjct: 310 LSFSERALVREHLGTLLGIPPTKQIFDIPDCDCPATESAIIGMLRYSLAHADRHFPQRSK 369
Query: 346 ARNKV 350
+KV
Sbjct: 370 VMDKV 374
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/307 (59%), Positives = 231/307 (75%), Gaps = 3/307 (0%)
Query: 47 LVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 106
+V +R+R ++++E+LQSYD+L+ SL AK KIL Y PG WIE G+ L DYDVP+T
Sbjct: 65 VVGERKRLSIYQEILQSYDELKIDSISLKQAKEKILRYRPGTWIEKARGLKLRDYDVPET 124
Query: 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 166
TSL+L+GP GSGKSSL+NRISKVF++DKFA RAQV+YNS GDGTYFL+E+ IPR SNS
Sbjct: 125 TSLILVGPSGSGKSSLINRISKVFDDDKFAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS 184
Query: 167 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 226
LYDTRSLS+ + +N M+K W+ EGV HGELVIR D+ +L ++CK +K G S
Sbjct: 185 ICLYDTRSLSNKSHENNEMLKNWMTEGVHHGELVIRSKDNQTLTESLKCKGNKKGFFSSK 244
Query: 227 IRKVNFVIFVVDGLAVLKSME-GDSDVEKQY-NQIVAT-TFNCPYLSFRDDKPVVVVTHG 283
RKVNFVI+V++GL+VL ME D + +Y +IV+T FN P+LSF+DDKPV+V+THG
Sbjct: 245 SRKVNFVIYVLNGLSVLNMMENADGAFKARYIEEIVSTFNFNNPFLSFKDDKPVLVLTHG 304
Query: 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 343
DLLSL+DRAR+R YLGE+LGIPP KQIFDIPE D E I+ MLRY LEHAD N+ K
Sbjct: 305 DLLSLSDRARVRVYLGEVLGIPPTKQIFDIPECDDLVTESAIIGMLRYTLEHADNNIPQK 364
Query: 344 SCARNKV 350
+ NKV
Sbjct: 365 TNVMNKV 371
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula] gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 181/307 (58%), Positives = 224/307 (72%), Gaps = 1/307 (0%)
Query: 45 DSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 104
DS++ +R+R +++E+LQSYD L+ +L +AK KILSY PG W E G+ L DYDVP
Sbjct: 69 DSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYRPGTWTEKAKGLKLCDYDVP 128
Query: 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGS 164
+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YNS G+GT FL+EY IPR S
Sbjct: 129 ETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYNSIRGNGTCFLREYMIPRDS 188
Query: 165 NSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224
NS LYDTRSLSDD+ +N M+K W+ +GVRHGELV R D L ++ K K G
Sbjct: 189 NSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMDDKRLSKNLKLKGDKKGFFS 248
Query: 225 SVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 283
S RKVN+VI V++GL+VL +E +E+ Y Q + +TFNCP+LSF+DDKPV+V+THG
Sbjct: 249 SKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTFNCPFLSFKDDKPVLVLTHG 308
Query: 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 343
DLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E IV MLRY LEHAD N K
Sbjct: 309 DLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESAIVGMLRYTLEHADGNFPQK 368
Query: 344 SCARNKV 350
S NK+
Sbjct: 369 SNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 181/307 (58%), Positives = 224/307 (72%), Gaps = 1/307 (0%)
Query: 45 DSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 104
DS++ +R+R +++E+LQSYD L+ +L +AK KILSY PG W E G+ L DYDVP
Sbjct: 69 DSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYRPGTWTEKAKGLKLCDYDVP 128
Query: 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGS 164
+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YNS G+GT FL+EY IPR S
Sbjct: 129 ETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYNSIRGNGTCFLREYMIPRDS 188
Query: 165 NSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224
NS LYDTRSLSDD+ +N M+K W+ +GVRHGELV R D L ++ K K G
Sbjct: 189 NSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMDDKRLSKNLKLKGDKKGFFS 248
Query: 225 SVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 283
S RKVN+VI V++GL+VL +E +E+ Y Q + +TFNCP+LSF+DDKPV+V+THG
Sbjct: 249 SKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTFNCPFLSFKDDKPVLVLTHG 308
Query: 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 343
DLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E IV MLRY LEHAD N K
Sbjct: 309 DLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESAIVGMLRYTLEHADGNFPQK 368
Query: 344 SCARNKV 350
S NK+
Sbjct: 369 SNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 165/299 (55%), Positives = 214/299 (71%), Gaps = 15/299 (5%)
Query: 45 DSLVDQRRRDAVFREVLQSYD-QLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 103
+ + D RRR+ ++E+LQSYD LR+ L A+N+IL YTPG+W + + LSDYDV
Sbjct: 47 NHVTDLRRREKSYQEILQSYDVLLRSSKRKLRQARNEILRYTPGSWSD----VKLSDYDV 102
Query: 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 163
PKTTS++L+GPKG+GKSSLVN+IS+V E+D+F RAQ ++ + GT+F+QEY IPRG
Sbjct: 103 PKTTSIMLVGPKGAGKSSLVNKISRVIEDDEFFPARAQESFGTQSKGGTFFVQEYMIPRG 162
Query: 164 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 221
S SF LYDTR LS +SDN MI+ W+ +GV HGE VI SDSS L++R+ + G
Sbjct: 163 GSASFCLYDTRGLSHISSSDNTRMIEQWMTKGVHHGEPVIWTSDSSDLKDRL-IRDGGTG 221
Query: 222 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 281
E RKVN VIFV++ + +LKSME E Y +++T FNCP LSF+DDKP VV+T
Sbjct: 222 YER---RKVNSVIFVINAVEILKSME----CETSYAHMISTAFNCPLLSFKDDKPAVVMT 274
Query: 282 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 340
HGD+LSL DRAR+R +LGELLGIPPAKQIFDIPES D L I ++L Y L+HAD+N
Sbjct: 275 HGDMLSLEDRARVRVFLGELLGIPPAKQIFDIPESRDIATALTICNLLCYSLDHADKNF 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566738|ref|NP_193039.3| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657819|gb|AEE83219.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/299 (52%), Positives = 209/299 (69%), Gaps = 15/299 (5%)
Query: 45 DSLVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 103
+ + D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++
Sbjct: 48 NHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNI 103
Query: 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 163
PKTTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG
Sbjct: 104 PKTTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRG 163
Query: 164 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 221
S SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G
Sbjct: 164 GSASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTG 222
Query: 222 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 281
E RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+T
Sbjct: 223 YER---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMT 275
Query: 282 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 340
HGD+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 276 HGDMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNF 334
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.802 | 0.584 | 0.530 | 1.4e-73 | |
| ZFIN|ZDB-GENE-030131-9145 | 313 | si:dkey-79f11.5 "si:dkey-79f11 | 0.394 | 0.440 | 0.308 | 1.5e-05 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 157/296 (53%), Positives = 208/296 (70%)
Query: 47 LVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 105
+ D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++PK
Sbjct: 50 VTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNIPK 105
Query: 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG-S 164
TTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG S
Sbjct: 106 TTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGS 165
Query: 165 NSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 223
SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G E
Sbjct: 166 ASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTGYE 224
Query: 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 283
RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+THG
Sbjct: 225 R---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMTHG 277
Query: 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN 339
D+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 278 DMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKN 333
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| ZFIN|ZDB-GENE-030131-9145 si:dkey-79f11.5 "si:dkey-79f11.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 50/162 (30%), Positives = 82/162 (50%)
Query: 89 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148
W+EN TLSD +V K +L++GP G+GKSS +N I+ VF+ + S +A V NS+
Sbjct: 57 WLEN---FTLSDPNV-KDIKILVVGPSGAGKSSFINSINSVFQ--RRISSKALV--NSAG 108
Query: 149 GDGTYF---LQEYTIPRGSNS--FSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELV 200
GD F L+ TI G S F +D L + S ++IK + V+ G
Sbjct: 109 GDNHSFTEKLKRLTIKNGKTSLPFVFFDIMGLEAEEFHGSKTEDIIKA-VFGHVKDG--- 164
Query: 201 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 242
+ ++ S+ + + H +PS+ + V++++DG V
Sbjct: 165 YKFNEEQSIDYKDQ---HYTS-DPSLSDQCFCVVYIIDGKIV 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 350 350 0.0010 116 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 613 (65 KB)
Total size of DFA: 229 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.92u 0.09s 30.01t Elapsed: 00:00:02
Total cpu time: 29.92u 0.09s 30.01t Elapsed: 00:00:02
Start: Fri May 10 06:37:56 2013 End: Fri May 10 06:37:58 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_II002486 | hypothetical protein (575 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 350 | |||
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.004 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 108 SLLLIGPKGSGKSSLVNRISKVFENDKF 135
+LL+GP G+GKS L R++ N
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPV 28
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This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.98 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.98 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.98 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.98 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.98 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.98 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.96 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.95 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.93 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.9 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.9 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.9 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.9 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.87 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.85 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.85 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.84 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.82 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.82 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.81 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.81 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.81 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.8 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.79 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.79 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.77 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.76 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.75 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.75 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.73 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.72 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.72 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.72 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.68 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.66 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.65 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.62 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.62 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.61 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.61 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.6 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.56 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.51 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.5 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.45 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.44 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.42 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.39 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.36 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.32 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.29 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.29 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.26 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.21 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.2 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.17 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.14 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.1 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.0 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.99 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.98 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.98 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.94 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.9 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.87 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.76 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.74 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.71 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.7 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.66 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.64 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.61 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.5 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.49 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.48 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.48 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.42 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.36 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.33 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.25 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.24 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.21 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.21 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.19 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.19 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.19 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.18 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.17 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.17 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.17 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.15 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.14 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.12 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.11 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.09 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.09 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.05 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.04 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.04 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.03 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.02 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.02 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.02 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.01 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.01 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.0 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 97.99 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 97.96 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.94 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.93 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.92 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 97.91 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.9 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.9 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.89 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.89 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 97.88 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.87 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.86 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.85 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 97.84 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.84 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.84 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.83 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 97.83 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.83 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.82 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.8 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.8 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.8 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 97.79 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.78 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.77 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 97.77 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.73 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.73 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.72 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.68 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.68 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.67 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.66 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=385.08 Aligned_cols=210 Identities=19% Similarity=0.257 Sum_probs=188.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+. .++ |++||++|.+||+++|+||||||||||+|||++|.. |++|+|.++|.++...
T Consensus 1 ~mi~i~~l~K~fg~---~~V---Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~ 69 (240)
T COG1126 1 MMIEIKNLSKSFGD---KEV---LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDK 69 (240)
T ss_pred CeEEEEeeeEEeCC---eEE---ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccch
Confidence 47999999999986 355 566999999999999999999999999999999999 9999999999877410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
......|...++|||+++||+. ++.+|+.+++....+.++++.++++.++|+++||.+
T Consensus 70 --------------~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~------- 128 (240)
T COG1126 70 --------------KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD------- 128 (240)
T ss_pred --------------hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-------
Confidence 0233456667888888888888 999999999887778888999999999999999998
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
.++.||.+||||||||||||||| |||||+||+ |.|+|+||| .+
T Consensus 129 ----------ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 129 ----------KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred ----------hhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 56999999999999999999999 999999986 999999999 79
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+.+.||||+ +|++|++++.|+++++|.+|.++.++.++..
T Consensus 199 Ar~Vadrvi-Fmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 199 AREVADRVI-FMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred HHHhhheEE-EeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999995 6999999999999999999999998888764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=372.76 Aligned_cols=214 Identities=14% Similarity=0.166 Sum_probs=189.8
Q ss_pred cEEEEEEEEEECCC--ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~--~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
||++++|+|.|..+ ..+.|+++ |||+|++||++||||.||||||||+|||++|.+ |++|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~---vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDD---VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeecc---ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEeccc
Confidence 68999999999752 23568555 999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. . +..+...|..++|+||+++++.. ++++||+|+++..+ .++++.++++.++|+.+||.+
T Consensus 73 l---~---------~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~d------ 133 (339)
T COG1135 73 L---S---------EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSD------ 133 (339)
T ss_pred C---C---------hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChh------
Confidence 1 1 23345566778888999998875 99999999998765 667899999999999999998
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++||.+|||||||||+||||| |||||+||+ |.||++|||
T Consensus 134 -----------k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 134 -----------KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred -----------hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 56999999999999999999999 999999997 999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
+.+.++|||++| |++|++++.|+..++|.+|.++-++.++...
T Consensus 203 ~Vvk~ic~rVav-m~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 203 EVVKRICDRVAV-LDQGRLVEEGTVSEVFANPKHAITQEFIGET 245 (339)
T ss_pred HHHHHHhhhheE-eeCCEEEEeccHHHhhcCcchHHHHHHHHhh
Confidence 788899999975 9999999999999999999999998888754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=356.40 Aligned_cols=209 Identities=19% Similarity=0.253 Sum_probs=179.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+|+|++ ..+ ++|+||+|++||+++++|||||||||++|+|++++. |++|+|.++|+++.
T Consensus 1 MI~~~nvsk~y~~---~~a---v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~--- 66 (309)
T COG1125 1 MIEFENVSKRYGN---KKA---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDIS--- 66 (309)
T ss_pred CceeeeeehhcCC---cee---eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecc---
Confidence 6899999999985 356 555999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.+...+.|..++||-|.+.+|+. ++.+||+.-+....+ +++..++++.++|+.+||++.-
T Consensus 67 ------------~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w-~k~~i~~r~~ELl~lvgL~p~~------ 127 (309)
T COG1125 67 ------------DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW-DKERIKKRADELLDLVGLDPSE------ 127 (309)
T ss_pred ------------cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHhCCCHHH------
Confidence 23344455555666666666665 677777765554444 4577889999999999998733
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
++++||++|||||||||.+|||| |||+++||+ ++|||+||| ++
T Consensus 128 ---------~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 128 ---------YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred ---------HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 78999999999999999999999 999999986 999999999 79
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+.+++|||+ +|++|+++..++|++++.+|.+++.+.+++.
T Consensus 199 A~kLadri~-vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 199 ALKLADRIA-VMDAGEIVQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred HHhhhceEE-EecCCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence 999999996 5999999999999999999999888887764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=369.36 Aligned_cols=213 Identities=15% Similarity=0.201 Sum_probs=183.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.++++||+++|++ ..+ ++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++..
T Consensus 3 ~~~l~i~~v~k~yg~---~~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~~ 71 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDITD 71 (352)
T ss_pred CceEEEEeeeeecCC---eeE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 467999999999984 466 555999999999999999999999999999999999 999999999999972
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....++. +++|||+..+|+. +|.+||+||++..+..++++.++++.++++.++|.+
T Consensus 72 ------lpp~kR~-----------ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------ 128 (352)
T COG3842 72 ------VPPEKRP-----------IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------ 128 (352)
T ss_pred ------CChhhcc-----------cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh------
Confidence 2222333 4555666666676 888999999985544555678899999999999999
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+.+++|++||||||||||||||| |||.|+||. |+|.|+|||
T Consensus 129 -----------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 129 -----------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred -----------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 67999999999999999999999 999999873 999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLR 330 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (350)
.++..++|||+ +|++|+|...|+|++++..|.+.+++.++...+.+.
T Consensus 198 eEAl~msDrI~-Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l~ 244 (352)
T COG3842 198 EEALAMSDRIA-VMNDGRIEQVGTPEEIYERPATRFVADFIGESNIFE 244 (352)
T ss_pred HHHhhhccceE-EccCCceeecCCHHHHhhCcchHHHHHHhCcceeee
Confidence 58889999996 599999999999999999999999999988655443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=340.64 Aligned_cols=219 Identities=20% Similarity=0.227 Sum_probs=192.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.++++||++.|+.. .| |++||++|++++++||+||||||||||||+++++.+.-.....+|+|.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg~~---~a---L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGDK---HA---LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECch---hh---hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 4679999999999853 45 66699999999999999999999999999999999843333456999999999861
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..+.+.+.|...+||||.++.|+.++.+||++|++.++..+ ++.++.+++.|+.++|.++++|
T Consensus 79 -------------~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKD--- 141 (253)
T COG1117 79 -------------PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKD--- 141 (253)
T ss_pred -------------CCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHH---
Confidence 13456677788899999999999999999999999988777 7888999999999999887754
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
.+++.+..||||||||++||||| |||||+||+ +.|||+||| ..+
T Consensus 142 ----------rL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 142 ----------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred ----------HhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 78899999999999999999999 999999986 899999999 689
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
++.+|+++ ++..|+++|.|+++++|.+|.++.|+.++.
T Consensus 212 aRvSD~ta-Ff~~G~LvE~g~T~~iF~~P~~~~TedYis 249 (253)
T COG1117 212 ARVSDYTA-FFYLGELVEFGPTDKIFTNPKHKRTEDYIS 249 (253)
T ss_pred HHHhHhhh-hhcccEEEEEcCHHhhhcCccHHHHHHHhc
Confidence 99999997 599999999999999999999998887764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=359.87 Aligned_cols=210 Identities=16% Similarity=0.175 Sum_probs=181.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+|+++||+++|++.. + |+++||+|++||+++|+||||||||||||+|+||.+ |++|+|.++|++++
T Consensus 1 M~~i~l~~v~K~yg~~~---~---l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt- 68 (338)
T COG3839 1 MAELELKNVRKSFGSFE---V---LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVT- 68 (338)
T ss_pred CcEEEEeeeEEEcCCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 35799999999998632 4 666999999999999999999999999999999999 99999999999997
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. +.+++ +-+++|||+..+++. +|.+|++|+++.. +.++++.++++.++++.+++++
T Consensus 69 -----~---------l~P~~--R~iamVFQ~yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~------ 125 (338)
T COG3839 69 -----D---------LPPEK--RGIAMVFQNYALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEH------ 125 (338)
T ss_pred -----C---------CChhH--CCEEEEeCCccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChh------
Confidence 1 12222 234566777777777 8889999988754 3456889999999999999999
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|.+||||||||||||||| |||.|+||. +.|+|+|||
T Consensus 126 -----------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 126 -----------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred -----------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 77999999999999999999999 999999874 899999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 328 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 328 (350)
.++..++|||+ +|++|+|.+.|+|.+++..|.+...+.+++...+
T Consensus 195 ~EAmtladri~-Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p~m 239 (338)
T COG3839 195 VEAMTLADRIV-VMNDGRIQQVGTPLELYERPANLFVAGFIGSPPM 239 (338)
T ss_pred HHHHhhCCEEE-EEeCCeeeecCChHHHhhCccchhhhhhcCChhh
Confidence 47789999996 5999999999999999999999998888886544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=333.62 Aligned_cols=216 Identities=14% Similarity=0.168 Sum_probs=173.8
Q ss_pred CcEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++++++|+++.|+.+. ..++ |++|||+|.+||++||+|+||||||||.|+|+|+.+ |++|+|.++|.++..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~---l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~ 73 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHA---LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAP 73 (252)
T ss_pred ceEEEeceEEEecCCcchhhh---hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCc
Confidence 5899999999997654 1235 555999999999999999999999999999999999 999999999987651
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.+.....++.+.++|||+... +.+. ++.+-+..++..++ -...++++.++|+.+||.+.
T Consensus 74 ---~~~~~~~~~~VQmVFQDp~~S---------LnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~----- 133 (252)
T COG1124 74 ---KKRAKAFYRPVQMVFQDPYSS---------LNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPS----- 133 (252)
T ss_pred ---cccchhhccceeEEecCCccc---------cCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHH-----
Confidence 111112334566777776543 2222 55555555554322 23445559999999999875
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|++|||||+||+|||||| |||||+||- +.|+|+|||
T Consensus 134 -----------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 134 -----------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred -----------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 57999999999999999999999 999999873 889999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 328 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 328 (350)
..+..+||||+| |++|++++.++.++++..|.+++++.++.....
T Consensus 203 ~~v~~~cdRi~V-m~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~~ 247 (252)
T COG1124 203 ALVEHMCDRIAV-MDNGQIVEIGPTEELLSHPSHPYTRELLEAVPS 247 (252)
T ss_pred HHHHHHhhheee-eeCCeEEEeechhhhhcCCccHHHHHHHHhhhc
Confidence 577899999975 999999999999999999999999888876543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=331.43 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=152.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.++++++++++|+. .++ |+|+||+|.+||+++|+||||||||||+|+|+|+.+ |++|+|.++|..+.
T Consensus 2 ~~l~i~~v~~~f~~---~~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~-- 68 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT-- 68 (248)
T ss_pred ceEEEEeeEEEeCc---eEE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--
Confidence 46899999999976 466 555999999999999999999999999999999999 99999999998764
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.+....++|+|+..++++ ++.+||.+++.... .++.+.++++.++++.+||.+
T Consensus 69 ------------------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~------- 122 (248)
T COG1116 69 ------------------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAG------- 122 (248)
T ss_pred ------------------CCCCCEEEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcc-------
Confidence 112223456666677787 99999999988654 345667779999999999999
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+.+++|++||||||||||||||| |||+++||. ++||++||| +
T Consensus 123 ----------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 123 ----------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 67999999999999999999999 999999974 899999999 7
Q ss_pred HHHhcccEEEEEecCC
Q 018829 284 DLLSLTDRARIRTYLG 299 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G 299 (350)
++..++|||+ +|.++
T Consensus 193 EAv~LsdRiv-vl~~~ 207 (248)
T COG1116 193 EAVYLADRVV-VLSNR 207 (248)
T ss_pred HHHhhhCEEE-EecCC
Confidence 8999999995 59984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=329.19 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=178.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.|++++|+++|++ ..+ ++++||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~fG~---~~I---ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVI---LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCC---EEE---ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 568999999999976 344 666999999999999999999999999999999999 999999999999873
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.+..+.+.+ +++++++ ||.-.+|.. +|++||.|++..+...+++..++.+...|+.+||...
T Consensus 75 ls~~~~~~i-r~r~Gvl-----------FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~----- 137 (263)
T COG1127 75 LSEEELYEI-RKRMGVL-----------FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA----- 137 (263)
T ss_pred cCHHHHHHH-HhheeEE-----------eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh-----
Confidence 332222222 2234444 455555555 7889999998888888999999999999999999984
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
.++.+|++|||||++|+|||||+ ||||++||+ +.|+++|||
T Consensus 138 -----------~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 138 -----------AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred -----------hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 26999999999999999999999 999999997 999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+.+..+|||++ ++.+|+|+..|+++++.+. .++..++++.
T Consensus 207 ~s~~~i~Drv~-~L~~gkv~~~Gt~~el~~s-d~P~v~qf~~ 246 (263)
T COG1127 207 DSLLTIADRVA-VLADGKVIAEGTPEELLAS-DDPWVRQFFN 246 (263)
T ss_pred HHHHhhhceEE-EEeCCEEEEeCCHHHHHhC-CCHHHHHHhc
Confidence 68889999996 5999999999999998874 5566666553
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=321.12 Aligned_cols=193 Identities=20% Similarity=0.244 Sum_probs=151.9
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++++||++.|..+. .+.+ |+++||+|++||+++|+|||||||||||++|.|+.+ |++|.|.++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~---L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEA---LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL 72 (226)
T ss_pred CcEEeeeEEEeccCCcceEe---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC
Confidence 478999999996543 3567 455999999999999999999999999999999999 9999999999998743
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
...+...++++.++|+||...+...+ ++.+||.++....... ....++++..+++.+|+.+..
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~l----------tv~ENv~lpl~~~~~~-~~~~~~~~~~l~~~lgl~~~~------ 135 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDL----------TVLENVELPLLIAGKS-AGRRKRAAEELLEVLGLEDRL------ 135 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCC----------CHHHHHHhHHHHcCCC-hhHHHHHHHHHHHhcCChhhh------
Confidence 33333344555666666665554433 5556666554433322 225677888999999998732
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-~~~ 285 (350)
.+++|.+||||||||||||||| ||||.+||. |+||||||| ..+
T Consensus 136 ----------~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 136 ----------LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred ----------ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 3489999999999999999999 999999874 789999999 578
Q ss_pred HhcccEEEEEecCCeEe
Q 018829 286 LSLTDRARIRTYLGELL 302 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv 302 (350)
+.+|||++ .|++|++.
T Consensus 206 A~~~dr~i-~l~dG~~~ 221 (226)
T COG1136 206 AKYADRVI-ELKDGKIE 221 (226)
T ss_pred HHhCCEEE-EEeCCeee
Confidence 88999995 69999943
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=333.28 Aligned_cols=211 Identities=17% Similarity=0.243 Sum_probs=177.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE---eCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 150 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i~ 150 (350)
+|+++++++.|+. ..+ ++|||++|+.||.+||+||||||||||+|+|+|+.. |++|.|.++|+ |.+
T Consensus 2 ~i~i~~~~~~~~~---~~a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGA---FGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhccc---ccc---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 5889999999975 456 455999999999999999999999999999999999 99999999999 543
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCC-CcHHHHHHHHHHHHHcCCCCcccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
......+++||+ +|+..+|+. +|.+||+||++..... ++.+++.++.++|+.+.|++
T Consensus 71 ------~~~~~~R~VGfv-----------FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~---- 129 (345)
T COG1118 71 ------NLAVRDRKVGFV-----------FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---- 129 (345)
T ss_pred ------ccchhhcceeEE-----------EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc----
Confidence 122223344454 555556665 8889999998766333 35678899999999999999
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH 282 (350)
+.++||.+||||||||||+|||| |||+.+||. |.|+++|||
T Consensus 130 -------------la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 130 -------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred -------------hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 78999999999999999999999 999999873 999999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHHH
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLR 330 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (350)
.++.++||||+ +|++|+|...|++++++..|..+....++...+.+.
T Consensus 197 D~eea~~ladrvv-vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~ 245 (345)
T COG1118 197 DQEEALELADRVV-VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLP 245 (345)
T ss_pred CHHHHHhhcceEE-EecCCeeeeeCCHHHHhcCCCccceecccccceecc
Confidence 68889999995 699999999999999999999988777776554443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=331.28 Aligned_cols=230 Identities=17% Similarity=0.213 Sum_probs=185.9
Q ss_pred cEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+|+++||+.+|... ..+.+++| |||+|++||++||||+|||||||+.++|+|+++.......+|+|.++|+++...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~---vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG---VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec---eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 47899999999643 34678666 999999999999999999999999999999997321224779999999987643
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCC-CcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+..+...++.+.++++||+++...+- ..++.+.+...+..|... .+++..+++.++|+.+|+++.
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnP--------v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~------ 143 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNP--------VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP------ 143 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCC--------hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH------
Confidence 33323356677788888887654211 125666666666655544 356778899999999999862
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
...+++||++|||||||||+||.|| ||||++||- |.|+|+||| .
T Consensus 144 --------~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 144 --------ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred --------HHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1257999999999999999999999 999999862 999999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 329 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 329 (350)
.++++||||+ ||+.|+|+|.|+++++|.+|.|+||+.++..+..+
T Consensus 216 vva~~aDri~-VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 216 VVAEIADRVA-VMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HHHHhcceEE-EEECcEEEEeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 7889999997 59999999999999999999999999999876555
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=321.82 Aligned_cols=198 Identities=17% Similarity=0.187 Sum_probs=159.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||++.|+++. ++ |++|||+|++||+++||||||||||||+|+|+|+.+ |++|+|.++|.++...
T Consensus 2 ~~i~~~nl~k~yp~~~--~a---L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGH--QA---LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCCc--ee---eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 5799999999997554 45 666999999999999999999999999999999999 9999999999887632
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhc-------CCCcHHHHHHHHHHHHHcCCCC
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~-------~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
... .+.+.+...++++|++++.+. ++.+||..|.+.+. +...++.+.++.++|+.+|+.+
T Consensus 72 ~~k------------~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~ 139 (258)
T COG3638 72 KGK------------ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD 139 (258)
T ss_pred chH------------HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH
Confidence 111 122333444445555555444 55566655543221 2234667788999999999998
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.+.++..+|||||||||+||||| |||+++||+ |.|||
T Consensus 140 -----------------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi 202 (258)
T COG3638 140 -----------------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI 202 (258)
T ss_pred -----------------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEE
Confidence 56889999999999999999999 999999986 89999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
+..| +.+.++||||+ -|++|+|+.+|+++++
T Consensus 203 ~nLH~vdlA~~Y~~Rii-gl~~G~ivfDg~~~el 235 (258)
T COG3638 203 VNLHQVDLAKKYADRII-GLKAGRIVFDGPASEL 235 (258)
T ss_pred EEechHHHHHHHHhhhe-EecCCcEEEeCChhhh
Confidence 9999 78999999996 5999999999999764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=330.00 Aligned_cols=216 Identities=17% Similarity=0.202 Sum_probs=186.0
Q ss_pred CcEEEEEEEEEECCC---------------------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPG---------------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~---------------------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..|+++||++-|+.. ..+.. ++|+||+|++||+..|+|-||||||||+|||+++.+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvG---v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVG---VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEe---eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC
Confidence 458999999999732 01223 455999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHH
Q 018829 132 NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLR 210 (350)
Q Consensus 132 ~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~ 210 (350)
|++|+|+++|.++...+..+-+.++ +....+|||++.++|. +|.+|+.||++.. ..++++.+
T Consensus 80 -----pt~G~ilv~g~di~~~~~~~Lr~~R-----------r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~-Gv~~~er~ 142 (386)
T COG4175 80 -----PTRGEILVDGKDIAKLSAAELRELR-----------RKKISMVFQSFALLPHRTVLENVAFGLEVQ-GVPKAERE 142 (386)
T ss_pred -----CCCceEEECCcchhcCCHHHHHHHH-----------hhhhhhhhhhhccccchhHhhhhhcceeec-CCCHHHHH
Confidence 9999999999998732222222222 2345678888888888 9999999999865 45678899
Q ss_pred HHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC--------
Q 018829 211 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 273 (350)
Q Consensus 211 ~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------- 273 (350)
+++.++++.+||.. +.++||++|||||||||.||||| |||+|+||+
T Consensus 143 ~~a~~~l~~VgL~~-----------------~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQd 205 (386)
T COG4175 143 ERALEALELVGLEG-----------------YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQD 205 (386)
T ss_pred HHHHHHHHHcCchh-----------------hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHH
Confidence 99999999999999 56999999999999999999999 999999986
Q ss_pred ---------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 274 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 274 ---------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
++||++||| +++.++.|||++ |++|+|+..|+|++++.+|...|...|+...
T Consensus 206 eLl~Lq~~l~KTIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v 268 (386)
T COG4175 206 ELLELQAKLKKTIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268 (386)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccHHHHHHHHhcC
Confidence 899999999 799999999975 9999999999999999999999999998754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=360.58 Aligned_cols=237 Identities=11% Similarity=0.135 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCC
Q 018829 45 DSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 117 (350)
Q Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGs 117 (350)
......-++.+|+.|+++.+|.++.. ..+.|+|+||+|.|+.....++ |+|+||+|+|||++|||||||+
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPSGs 505 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPSGS 505 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCCCC
Confidence 34455556677999999988876443 3356999999999986544556 5669999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhh
Q 018829 118 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 197 (350)
Q Consensus 118 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~ 197 (350)
||||++++|.++|+ |++|+|.+||+|+. .+.....+..+++|.|++-+|..++.+||.+|
T Consensus 506 GKSTiasLL~rfY~-----PtsG~IllDG~~i~---------------~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG 565 (716)
T KOG0058|consen 506 GKSTIASLLLRFYD-----PTSGRILLDGVPIS---------------DINHKYLRRKIGLVGQEPVLFSGSIRENIAYG 565 (716)
T ss_pred CHHHHHHHHHHhcC-----CCCCeEEECCeehh---------------hcCHHHHHHHeeeeeccceeecccHHHHHhcC
Confidence 99999999999999 99999999999997 34455556667777777778888888999988
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhh
Q 018829 198 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 268 (350)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 268 (350)
.. ...++++..++++.+..+++...++++..+|+|+. .+||||||||+|||||| ||.|
T Consensus 566 ~~-------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG------~qLSGGQKQRIAIARALlr~P~VLILDEAT 632 (716)
T KOG0058|consen 566 LD-------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG------SQLSGGQKQRIAIARALLRNPRVLILDEAT 632 (716)
T ss_pred CC-------CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc------ccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence 76 23456677888888888877777888888887774 58999999999999999 9999
Q ss_pred cCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 269 LSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 269 s~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
|+||. ++|||+|+| -...+.||+|+ ++++|++++.|+|+|+++.+.--|
T Consensus 633 SALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv-vi~~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 633 SALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV-VIDKGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred hhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE-EEcCCeEEecccHHHHhhCcccHH
Confidence 99873 899999999 46667899995 699999999999999999875443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=366.77 Aligned_cols=233 Identities=12% Similarity=0.150 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
=|..++..+....|+.++++.++|.... ..+-++++||+|+|+...+ .+ |+|+||+|++||++||+|+
T Consensus 432 ~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~v---L~~isL~I~~Ge~vaIvG~ 507 (709)
T COG2274 432 LWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PV---LEDLSLEIPPGEKVAIVGR 507 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCc-ch---hhceeEEeCCCCEEEEECC
Confidence 4889999999999999999999885332 1235999999999986654 34 6669999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+|+|.|+|+ |++|+|.+||.|+. .+.+...|...++|.|+..++..++.+|+
T Consensus 508 SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~---------------~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi 567 (709)
T COG2274 508 SGSGKSTLLKLLLGLYK-----PQQGRILLDGVDLN---------------DIDLASLRRQVGYVLQDPFLFSGSIRENI 567 (709)
T ss_pred CCCCHHHHHHHHhcCCC-----CCCceEEECCEeHH---------------hcCHHHHHhheeEEcccchhhcCcHHHHH
Confidence 99999999999999999 99999999999987 23444445555555666666666667777
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.++.. ....+++.++++..|+.+++...++++.+.|. +....||||||||++||||| |
T Consensus 568 ~l~~p-------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~------E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 568 ALGNP-------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVG------EGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred hcCCC-------CCCHHHHHHHHHHhCcHHHHHhcccccccccc------cCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 65443 22346777889999999888778888888554 45678999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||+||+ |+|+|+||| ....+.||||+ +|++|+|+++|+|+++++.
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIi-Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 635 EATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRII-VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEE-EccCCceeccCCHHHHHHh
Confidence 99999984 799999999 67778999995 5999999999999999886
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=333.59 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=168.4
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++||+++|+.+. ..++ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999996322 2346 666999999999999999999999999999999999 9999999999988521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .+.....++.+++++|+...+.. .++.+|+.++.... ..+..+.++++.++++.+|+.+
T Consensus 73 ~-~~~l~~~r~~Ig~v~Q~~~l~~~----------~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~-------- 132 (343)
T TIGR02314 73 S-NSELTKARRQIGMIFQHFNLLSS----------RTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGD-------- 132 (343)
T ss_pred C-HHHHHHHhcCEEEEECCcccccc----------CcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 1 11111113345666665443321 25566666554322 2334566778899999999988
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
.++++|.+||||||||++||||| ||||++||+ |.|||+||| +.
T Consensus 133 ---------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 133 ---------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999874 789999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+.++||+++ +|++|++++.|++++++..|.++.++.++..
T Consensus 204 v~~~~d~v~-vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 204 VKRICDCVA-VISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 779999996 5999999999999999999888777766653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=304.07 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=185.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++.|+++|++++|+.. .+ |++||++-++|+++.|||.||||||||+|||+-+.. |+.|+|.++|+.+..
T Consensus 4 ~~~l~v~dlHK~~G~~---eV---LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEH---EV---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccc---hh---hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 4579999999999864 34 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
-....-.... .-.-.++..+...++|||++++... ++.+|+..++.---..++.+..++++.+|.++|+.+.
T Consensus 73 k~~~~G~l~~--ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek----- 145 (256)
T COG4598 73 KRDKDGQLKP--ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK----- 145 (256)
T ss_pred eeCCCCCeee--CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-----
Confidence 0000000000 0011234456667889999999987 9999998876544456677888999999999999983
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+.||..||||||||++||||| |||||+||+ |+|++++|| .
T Consensus 146 ------------~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 146 ------------ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred ------------hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 4899999999999999999999 999999986 999999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
++...+.+++ ++++|.|-++|+|+++|.+|..+..+.++..
T Consensus 214 FAR~Vss~v~-fLh~G~iEE~G~P~qvf~nP~S~RlkqFlss 254 (256)
T COG4598 214 FARDVSSHVI-FLHQGKIEEEGPPEQVFGNPQSPRLKQFLSS 254 (256)
T ss_pred HHHhhhhheE-EeecceecccCChHHHhcCCCCHHHHHHHHh
Confidence 8889999994 6999999999999999999999988877763
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=321.49 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=159.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++||+++|+. . ++ |+|+||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~~-~--~i---l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~-- 68 (258)
T COG1120 2 MLEVENLSFGYGG-K--PI---LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIAS-- 68 (258)
T ss_pred eeEEEEEEEEECC-e--eE---EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhh--
Confidence 6899999999984 3 34 677999999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhc---CCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.+...+ .+.++|++|......++ |++-.. +|...+. ....+++++.+.++|+.+|+.+
T Consensus 69 -~~~kel-Ak~ia~vpQ~~~~~~~~tV~d~V~-----------~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~----- 130 (258)
T COG1120 69 -LSPKEL-AKKLAYVPQSPSAPFGLTVYELVL-----------LGRYPHLGLFGRPSKEDEEIVEEALELLGLEH----- 130 (258)
T ss_pred -cCHHHH-hhhEEEeccCCCCCCCcEEeehHh-----------hcCCcccccccCCCHhHHHHHHHHHHHhCcHH-----
Confidence 111111 23567888876544444 554443 3322111 1234566778999999999999
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
++++...+||||||||+.||||| ||||+.||- |+|||+++|
T Consensus 131 ------------la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 131 ------------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred ------------HhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 67999999999999999999999 999999872 899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+.++||+++ +|++|+++..|+|++++..
T Consensus 199 lN~A~ryad~~i-~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 199 LNLAARYADHLI-LLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHHHhCCEEE-EEECCeEEeecCcchhcCH
Confidence 78999999996 5999999999999988765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=299.57 Aligned_cols=196 Identities=17% Similarity=0.234 Sum_probs=161.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|+.+++|.++|+.-. -.++++|++||++||+||||||||||+|+|+|+.. |.+|+|+++|++.+.
T Consensus 1 ~l~L~~V~~~y~~~~--------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~-- 65 (231)
T COG3840 1 MLALDDVRFSYGHLP--------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTA-- 65 (231)
T ss_pred CccccceEEeeCcce--------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCc--
Confidence 467899999997422 23899999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.....+.+++.||+...|..+ +|.+||.+|....-+. ..+.++++..++.++|+..
T Consensus 66 ----~~P~~RPVSmlFQEnNLFaHL----------tV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~--------- 121 (231)
T COG3840 66 ----SPPAERPVSMLFQENNLFAHL----------TVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAG--------- 121 (231)
T ss_pred ----CCcccCChhhhhhccccchhh----------hhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhh---------
Confidence 122233445566655544333 6666776665432222 3667888999999999999
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+.++.|.+||||||||+|+||+| |||+++||+ +.|++|||| +++
T Consensus 122 --------~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 122 --------FLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred --------HhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 67999999999999999999999 999999885 899999999 899
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESS 317 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~ 317 (350)
.+++|+++ ++++|+|...|+.++++.....+
T Consensus 194 ~~ia~~~~-fl~~Gri~~~g~~~~~~~~~~~~ 224 (231)
T COG3840 194 ARIADRVV-FLDNGRIAAQGSTQELLSGKASA 224 (231)
T ss_pred HHhhhceE-EEeCCEEEeeccHHHHhccCChH
Confidence 99999995 69999999999999998865543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=301.78 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=159.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+|+||++.|+.+ .+| |+||||+|++||++-|+||||||||||+|+|++..+ |++|+|+++|.++...
T Consensus 1 mI~f~~V~k~Y~~g--~~a---L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l- 69 (223)
T COG2884 1 MIRFENVSKAYPGG--REA---LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRL- 69 (223)
T ss_pred CeeehhhhhhcCCC--chh---hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecccc-
Confidence 68999999999876 356 555999999999999999999999999999999999 9999999999998621
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
...+..+-|+++|++|||.++. .. ++.+||++++...+ .+..+.++++.++|+.+||.+
T Consensus 70 ~~~~iP~LRR~IGvVFQD~rLL-----------~~~tvyeNVA~pL~v~G-~~~~~i~~rV~~~L~~VgL~~-------- 129 (223)
T COG2884 70 KGREIPFLRRQIGVVFQDFRLL-----------PDRTVYENVALPLRVIG-KPPREIRRRVSEVLDLVGLKH-------- 129 (223)
T ss_pred cccccchhhheeeeEeeecccc-----------ccchHhhhhhhhhhccC-CCHHHHHHHHHHHHHHhccch--------
Confidence 1112222355666666665544 33 77788888877654 455788999999999999998
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
.++..|.+||||||||++||||+ ||||.+||+ |.||||.|| ..+
T Consensus 130 ---------k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 130 ---------KARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred ---------hhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 45899999999999999999999 999999986 999999999 466
Q ss_pred HhcccEEEEEecCCeEeecCC
Q 018829 286 LSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~ 306 (350)
.++--|++ .+++|+++....
T Consensus 201 ~~~~~rvl-~l~~Grl~~d~~ 220 (223)
T COG2884 201 NRMRHRVL-ALEDGRLVRDES 220 (223)
T ss_pred HhccCcEE-EEeCCEEEeccc
Confidence 67778885 699999987654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=333.93 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=167.0
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|+++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~i~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~- 70 (356)
T PRK11650 2 AGLKLQAVRKSYDGKT--QV---IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE- 70 (356)
T ss_pred CEEEEEeEEEEeCCCC--EE---EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC-
Confidence 4699999999993233 34 666999999999999999999999999999999999 999999999998851
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 71 -----~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 126 (356)
T PRK11650 71 -----LEPADRDIAMVFQNYALYPHM----------SVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP-------- 126 (356)
T ss_pred -----CCHHHCCEEEEeCCccccCCC----------CHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 111123456666655444322 5566666654422 2334556678899999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. +.|+|+||| ++
T Consensus 127 ---------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 197 (356)
T PRK11650 127 ---------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE 197 (356)
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999873 799999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+..+||+++ +|++|++++.|++++++.+|...+.+.++.
T Consensus 198 a~~l~D~i~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 198 AMTLADRVV-VMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHhCCEEE-EEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 889999996 599999999999999999988776666554
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=340.82 Aligned_cols=221 Identities=16% Similarity=0.209 Sum_probs=179.4
Q ss_pred CCCcEEEEEEEEEECCC--------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE
Q 018829 71 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 142 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~--------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I 142 (350)
..++++++||+++|... ..+.|++| |||+|.+||++||||+||||||||.|+|+|+++ |++|.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~---VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDD---VSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeee---eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 45789999999999731 23677555 999999999999999999999999999999999 999999
Q ss_pred EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 018829 143 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 221 (350)
Q Consensus 143 ~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g 221 (350)
.++|.+... . ..+....++.+.++||++... +.+. ++.+.+..++..+......+.++++.++++.+|
T Consensus 349 ~~~g~~~~~-~-~~~~~~~r~~~QmvFQdp~~S---------LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg 417 (539)
T COG1123 349 IFDGQDLDL-T-GGELRRLRRRIQMVFQDPYSS---------LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417 (539)
T ss_pred EEeCccccc-c-cchhhhhhhheEEEEeCcccc---------cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcC
Confidence 999988321 1 111111223444555554322 3333 788888877776655445667778999999999
Q ss_pred CCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------Cc
Q 018829 222 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 275 (350)
Q Consensus 222 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~ 275 (350)
|.+. +++++|++||||||||+|||||| |||+|+||. |.
T Consensus 418 L~~~----------------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 418 LPPE----------------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred CCHH----------------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 9864 57999999999999999999999 999999984 99
Q ss_pred eEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 018829 276 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 327 (350)
Q Consensus 276 TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 327 (350)
|+|+||| +.+..+||||+ +|++|+|++.|+.+++|..|+++|++.++..+.
T Consensus 482 t~lfISHDl~vV~~i~drv~-vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVA-VMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred EEEEEeCCHHHHHhhCceEE-EEECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 9999999 57889999996 599999999999999999999999999887653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=326.85 Aligned_cols=207 Identities=13% Similarity=0.158 Sum_probs=170.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 4 ~~~l~~~~l~~~~~~---~~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTV---IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTH 72 (351)
T ss_pred CcEEEEEeEEEEECC---eEE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 568999999999974 345 666999999999999999999999999999999999 999999999998851
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....++.+++++|+.. +++. ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 73 ------~~~~~r~ig~vfQ~~~-----------lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~------ 128 (351)
T PRK11432 73 ------RSIQQRDICMVFQSYA-----------LFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAG------ 128 (351)
T ss_pred ------CCHHHCCEEEEeCCcc-----------cCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1112234556555544 4443 5667777665422 2334566788999999999988
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|.+||||||||++||||| |||+++||. ++|+|+|||
T Consensus 129 -----------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 129 -----------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ 197 (351)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 56999999999999999999999 999999873 799999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+++..+||||+ +|++|++++.|++++++.+|...+.+.++..
T Consensus 198 ~e~~~laD~i~-vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 239 (351)
T PRK11432 198 SEAFAVSDTVI-VMNKGKIMQIGSPQELYRQPASRFMASFMGD 239 (351)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCchHHHHhcCC
Confidence 57889999996 5999999999999999999988877777663
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=311.17 Aligned_cols=201 Identities=18% Similarity=0.244 Sum_probs=165.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++++++++|+|+++ ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~--~~~---l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~- 70 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAA---LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSS- 70 (235)
T ss_pred ceEEEEEEEEEcCCC--cee---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccc-
Confidence 578999999999866 245 666999999999999999999999999999999999 999999999988641
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.+.....++.+++++|++.. .++..+|.+.++|++...+. +.++.++++.++++.+|+.+
T Consensus 71 --~~~~~~~~~~vG~VfQnpd~---------q~~~~tV~~evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~-------- 130 (235)
T COG1122 71 --EKSLLELRQKVGLVFQNPDD---------QLFGPTVEDEVAFGLENLGL-PREEIEERVAEALELVGLEE-------- 130 (235)
T ss_pred --hhhHHHhhcceEEEEECccc---------ccccCcHHHHHhhchhhcCC-CHHHHHHHHHHHHHHcCchh--------
Confidence 00111112344555554422 24555788888888876543 45578999999999999998
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
++++.|+.||||||||+|||.+| ||||++||+ |+|+|++|| +.
T Consensus 131 ---------~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 131 ---------LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred ---------hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 56999999999999999999999 999999985 689999999 68
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+..+|||++ +|++|+++.+|++++++..+
T Consensus 202 ~~~~ad~v~-vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 202 VLEYADRVV-VLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHhhCCEEE-EEECCEEeecCCHHHHhhhh
Confidence 889999996 59999999999999888764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=323.96 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=168.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA---FTA---LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITR 70 (353)
T ss_pred CcEEEEEEEEEEeCC---eEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 457999999999974 234 667999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
....++.++|++|+...|..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 71 ------~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~------- 126 (353)
T TIGR03265 71 ------LPPQKRDYGIVFQSYALFPNL----------TVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPG------- 126 (353)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc-------
Confidence 111123455555554444322 5666666665422 2334566788999999999998
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
++++++.+||||||||++||||| |||+++||. +.|+|++|| +
T Consensus 127 ----------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 127 ----------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999873 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
++..+|||++ +|++|++++.|++++++.+|.+.+.+.++.
T Consensus 197 ea~~l~d~i~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 197 EALSMADRIV-VMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 7889999996 599999999999999999998777666655
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=320.04 Aligned_cols=225 Identities=13% Similarity=0.133 Sum_probs=169.6
Q ss_pred CcEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++|+++||++.|+... ..++ |+||||+|++||++||+||||||||||+++|+|+++.. ..|++|+|.++|+++..
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR 77 (326)
T ss_pred ceEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence 4799999999996432 2456 55599999999999999999999999999999999711 11489999999999852
Q ss_pred CccccccccCCCccceeeccccc-c-ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRS-L-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~-~-~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
....+.....++.+++++|+... + ..+ ++.+++......+......+.++++.++++.+||.+..
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--- 144 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCY----------TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--- 144 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH---
Confidence 21111122233467888887642 1 111 22222222222221223455677899999999997511
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
..+++++++||||||||++||||| ||||++||. |.|+|+|||
T Consensus 145 -----------~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 145 -----------SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred -----------HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 146899999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
+.+.++||||+ +|++|+|++.|++++++..|.++|++.++...
T Consensus 214 l~~~~~~adri~-vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~~ 257 (326)
T PRK11022 214 LALVAEAAHKII-VMYAGQVVETGKAHDIFRAPRHPYTQALLRAL 257 (326)
T ss_pred HHHHHHhCCEEE-EEECCEEEEECCHHHHhhCCCChHHHHHHHhC
Confidence 46778999996 59999999999999999999999998887654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=333.62 Aligned_cols=226 Identities=16% Similarity=0.210 Sum_probs=186.8
Q ss_pred CcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++|+++||++.|... .++.+++| |||+|.+||++||||+|||||||++++|.|+++.+. ...+|+|.++|.++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~---vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRD---VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLG 79 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeec---ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhc
Confidence 589999999999533 33567555 999999999999999999999999999999999432 2458999999998865
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....+...++.+.++++||+++.. +.+ .++.+.|......|.....++.++++.++|+++|+++..
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~s---------lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~---- 146 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTS---------LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE---- 146 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhh---------cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh----
Confidence 444444556667788888887654 122 266666776666676556788899999999999998743
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++||++||||||||+.||+|| ||||++||. |+++|+|||
T Consensus 147 -----------~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl 215 (539)
T COG1123 147 -----------RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL 215 (539)
T ss_pred -----------hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence 12579999999999999999999 999999873 999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 327 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 327 (350)
..++++||||+ +|++|+++|.|++++++.+|.++|++.++....
T Consensus 216 ~Vva~~aDrv~-Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p 259 (539)
T COG1123 216 GVVAELADRVV-VMYKGEIVETGPTEEILSNPQHPYTRGLLAAVP 259 (539)
T ss_pred HHHHHhcCeEE-EEECCEEEEecCHHHHHhccCCcccHHHHhhCC
Confidence 57889999995 599999999999999999999999999887643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=320.97 Aligned_cols=221 Identities=13% Similarity=0.177 Sum_probs=170.7
Q ss_pred CCCcEEEEEEEEEECCC----------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 71 IGSLTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~----------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
.+++|+++||+++|+.+ ....+ ++|+||+|++||+++|+|+||||||||+++|+|+++ |++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G 76 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDG 76 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCc
Confidence 45789999999999631 12456 555999999999999999999999999999999999 9999
Q ss_pred EEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhc-CCCcHHHHHHHHHHHH
Q 018829 141 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 218 (350)
Q Consensus 141 ~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~ 218 (350)
+|.++|+++...... .....++.++|++|+... .+++ .++.+|+.++...+. ..+..+.++++.++++
T Consensus 77 ~I~~~G~~i~~~~~~-~~~~~r~~i~~v~Q~~~~---------~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 146 (331)
T PRK15079 77 EVAWLGKDLLGMKDD-EWRAVRSDIQMIFQDPLA---------SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMML 146 (331)
T ss_pred EEEECCEECCcCCHH-HHHHHhCceEEEecCchh---------hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 999999988521111 111112356677776521 1221 145555555433221 2234566778889999
Q ss_pred HcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------
Q 018829 219 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 273 (350)
Q Consensus 219 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------- 273 (350)
.+++.+. +++++|++||||||||++||||| ||||++||.
T Consensus 147 ~vgl~~~----------------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 147 KVGLLPN----------------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred HcCCChH----------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999642 46999999999999999999999 999999873
Q ss_pred -CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 274 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 274 -g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
+.|+|+||| +.+..+||||+ +|++|++++.|++++++..|.++|++.++...
T Consensus 211 ~~~til~iTHdl~~~~~~~dri~-vl~~G~ive~g~~~~i~~~~~~py~~~l~~~~ 265 (331)
T PRK15079 211 MGLSLIFIAHDLAVVKHISDRVL-VMYLGHAVELGTYDEVYHNPLHPYTKALMSAV 265 (331)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHcCCCCHHHHHHHhhC
Confidence 789999999 57778999996 59999999999999999999999988777644
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=323.61 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=170.8
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 11 ~~~~L~l~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 79 (375)
T PRK09452 11 LSPLVELRGISKSFDG---KEV---ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDIT 79 (375)
T ss_pred CCceEEEEEEEEEECC---eEE---EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 4567999999999974 234 666999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. ....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 80 ~------~~~~~r~ig~vfQ~~~lfp~l----------tv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~------ 136 (375)
T PRK09452 80 H------VPAENRHVNTVFQSYALFPHM----------TVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEE------ 136 (375)
T ss_pred C------CCHHHCCEEEEecCcccCCCC----------CHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1 111123456666655444332 5566666655422 2234556678899999999988
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 137 -----------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 137 -----------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999873 799999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
.++..+||+|+ +|++|++++.|++++++.+|.+.+++.++...
T Consensus 206 ~ea~~laDri~-vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g~~ 248 (375)
T PRK09452 206 EEALTMSDRIV-VMRDGRIEQDGTPREIYEEPKNLFVARFIGEI 248 (375)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhcCcc
Confidence 57889999996 59999999999999999999988877777643
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=320.11 Aligned_cols=207 Identities=14% Similarity=0.205 Sum_probs=167.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~L~i~~l~~~~~~---~~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~-- 68 (353)
T PRK10851 2 SIEIANIKKSFGR---TQV---LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR-- 68 (353)
T ss_pred EEEEEEEEEEeCC---eEE---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 4899999999974 235 677999999999999999999999999999999999 999999999998851
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh---cCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....++.++|++|+...+..+ ++.+|+.++.... ...+..+.++++.++++.+++.+
T Consensus 69 ----~~~~~r~i~~v~Q~~~l~p~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------ 128 (353)
T PRK10851 69 ----LHARDRKVGFVFQHYALFRHM----------TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH------ 128 (353)
T ss_pred ----CCHHHCCEEEEecCcccCCCC----------cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch------
Confidence 111123456666654443322 5566666654321 12234556778899999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
++++++.+||||||||++||||| |||+++||. ++|+|+|||
T Consensus 129 -----------~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 129 -----------LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+++..+||||+ +|++|++++.|++++++..|.+.+++.++..
T Consensus 198 ~ea~~~~Dri~-vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g~ 239 (353)
T PRK10851 198 EEAMEVADRVV-VMSQGNIEQAGTPDQVWREPATRFVLEFMGE 239 (353)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhcCc
Confidence 57889999996 5999999999999999999988777776653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=317.64 Aligned_cols=223 Identities=13% Similarity=0.139 Sum_probs=170.1
Q ss_pred CCCcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc---ccEEEECC
Q 018829 71 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 146 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G 146 (350)
.+++|+++||++.|+.. ....+ ++|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 45789999999999532 22456 555999999999999999999999999999999998 75 99999999
Q ss_pred EeCCCCccccccccCCCccceeeccccc--cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 147 SVGDGTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 147 ~~i~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
+++......+...++++.+++++|+... ...+ ++.+++.+....+......+..+++.++++.+++.+
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNPYM----------RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 9986221111112233467788887631 1111 223333332222222234456678889999999975
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.. +.++++|++||||||||++||||| ||||++||. +.|+|
T Consensus 151 ~~--------------~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til 216 (330)
T PRK09473 151 AR--------------KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAII 216 (330)
T ss_pred hH--------------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 135789999999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
+||| +.+.++|||++ +|++|+|++.|++++++..|.++|++.++..+
T Consensus 217 ~iTHdl~~~~~~~Dri~-vm~~G~ive~g~~~~i~~~p~~pyt~~l~~~~ 265 (330)
T PRK09473 217 MITHDLGVVAGICDKVL-VMYAGRTMEYGNARDVFYQPSHPYSIGLLNAV 265 (330)
T ss_pred EEECCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999 46678999996 59999999999999999999999998887654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=317.44 Aligned_cols=220 Identities=14% Similarity=0.150 Sum_probs=169.4
Q ss_pred CCcEEEEEEEEEECCC-------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 72 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~-------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+++|+++||++.|+.. ..+.+ |++|||+|++||++||+|+||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 4689999999999631 12456 555999999999999999999999999999999999 99999999
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC
Q 018829 145 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 145 ~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
+|+++...... .....++.+++++|+.... +.+. ++.+++..+...+......+.++++.++++.+|+.
T Consensus 75 ~g~~l~~~~~~-~~~~~r~~i~~v~Q~~~~~---------l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 144 (327)
T PRK11308 75 QGQDLLKADPE-AQKLLRQKIQIVFQNPYGS---------LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR 144 (327)
T ss_pred CCEEcCcCCHH-HHHHHhCCEEEEEcCchhh---------cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC
Confidence 99998522111 1111233577888775311 1111 33333333322221223445667889999999997
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceE
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 277 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TV 277 (350)
+. .++++|++||||||||++||||| ||||++||. |.|+
T Consensus 145 ~~----------------~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~ti 208 (327)
T PRK11308 145 PE----------------HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSY 208 (327)
T ss_pred hH----------------HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 42 46899999999999999999999 999999873 7999
Q ss_pred EEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 278 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 278 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
|+||| ..+.++||+|+ +|++|+|++.|++++++..|.++|++.++...
T Consensus 209 l~iTHdl~~~~~~adrv~-vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~~ 258 (327)
T PRK11308 209 VFISHDLSVVEHIADEVM-VMYLGRCVEKGTKEQIFNNPRHPYTQALLSAT 258 (327)
T ss_pred EEEeCCHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCCCCHHHHHHHHhC
Confidence 99999 56678999996 59999999999999999999999998887654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=305.00 Aligned_cols=199 Identities=18% Similarity=0.246 Sum_probs=158.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++|++++|+.. + + |+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.++|.+...
T Consensus 2 ~~~i~v~nl~v~y~~~-~--v---l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR-P--V---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE-e--e---eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4679999999999753 3 4 677999999999999999999999999999999999 999999999987641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhc---CCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
...+..++|++|... +. .-||.+|.+-+..+..... ....+..++.+.++|+.+|+.+
T Consensus 71 -------~~~~~~IgYVPQ~~~-~d-------~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~---- 131 (254)
T COG1121 71 -------RRKRLRIGYVPQKSS-VD-------RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED---- 131 (254)
T ss_pred -------cccCCeEEEcCcccc-cC-------CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh----
Confidence 111235678887541 11 1234456666665522111 1123455789999999999998
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
+.++...+|||||+|||.||||| |||++++|. |+|||+|||
T Consensus 132 -------------~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 132 -------------LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred -------------hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999999999999999999999 999999763 999999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
..+..++|+| + +=+++++..|++++++..+.
T Consensus 199 L~~v~~~~D~v-i-~Ln~~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 199 LGLVMAYFDRV-I-CLNRHLIASGPPEEVLTEEN 230 (254)
T ss_pred cHHhHhhCCEE-E-EEcCeeEeccChhhccCHHH
Confidence 5788999999 4 55679999999999887643
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=340.34 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHccchhcccCC------CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 45 DSLVDQRRRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
..+.....+..|+.++++.+++.++.. ...++++||+|+|+++.++ |+|+||+|++||.+|||||||||
T Consensus 293 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~Ge~vaiVG~sGsG 367 (567)
T COG1132 293 SLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPGEKVAIVGPSGSG 367 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCCCEEEEECCCCCC
Confidence 344455666779999999876644431 2349999999999854444 77799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 198 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~ 198 (350)
||||+++|+|+++ |++|+|.+||+|+. .+...+.+..+++|+|++.+|..++.+||.++.
T Consensus 368 KSTl~~LL~r~~~-----~~~G~I~idg~dI~---------------~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~ 427 (567)
T COG1132 368 KSTLIKLLLRLYD-----PTSGEILIDGIDIR---------------DISLDSLRKRIGIVSQDPLLFSGTIRENIALGR 427 (567)
T ss_pred HHHHHHHHhccCC-----CCCCeEEECCEehh---------------hcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence 9999999999999 99999999999997 233444455555666666666677777877665
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhc
Q 018829 199 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 269 (350)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts 269 (350)
.. ..++++.++++.+++.+.+...++++..+|+ +....||||||||++||||+ |||||
T Consensus 428 ~~-------at~eei~~a~k~a~~~d~I~~lp~g~dt~vg------e~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 428 PD-------ATDEEIEEALKLANAHEFIANLPDGYDTIVG------ERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred CC-------CCHHHHHHHHHHhChHHHHHhCcccccceec------CCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 41 2346677778877777665555556666555 34568999999999999999 99999
Q ss_pred CCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 270 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 270 ~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+||. ++|+|+|+| -...+.||+|+ +|++|++++.|+|++++.+
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~Ii-Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRII-VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 9874 679999999 34445599995 5999999999999999887
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=318.11 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=166.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc--cEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~--G~I~i~G~~i~~ 151 (350)
.|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTV---LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEEECC---eEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCC
Confidence 4899999999974 245 666999999999999999999999999999999999 999 999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
....++.+++++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 74 ------~~~~~r~ig~vfQ~~~l~p~~----------tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 129 (362)
T TIGR03258 74 ------APPHKRGLALLFQNYALFPHL----------KVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGD------- 129 (362)
T ss_pred ------CCHHHCCEEEEECCcccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCc-------
Confidence 111123455666654443322 5666666665422 2344566778999999999988
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------------------CceEEEEec--
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH-- 282 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------------g~TVIiiTH-- 282 (350)
++++++.+||||||||++||||| |||+++||. |.|+|++||
T Consensus 130 ----------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 130 ----------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 56999999999999999999999 999999863 579999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+++..+||||+ +|++|++++.|++++++..|...+.+.++..
T Consensus 200 ~ea~~l~dri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 241 (362)
T TIGR03258 200 DDALTLADKAG-IMKDGRLAAHGEPQALYDAPADGFAAEFLGA 241 (362)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcCcHHHHHhhCc
Confidence 57889999996 5999999999999999999877766666653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=318.37 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=169.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 17 ~~~l~l~~v~~~~~~---~~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHA---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSH 85 (377)
T ss_pred CceEEEEeEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 567999999999964 235 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
....++.++|++|+...|..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 86 ------~~~~~r~ig~vfQ~~~lfp~l----------tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~------- 141 (377)
T PRK11607 86 ------VPPYQRPINMMFQSYALFPHM----------TVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQE------- 141 (377)
T ss_pred ------CCHHHCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111233556666665544332 5556666554322 2234566778899999999988
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+++++|.+||||||||++||||| |||+++||. +.|+|++|| +
T Consensus 142 ----------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 142 ----------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999873 899999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
++..+|||++ +|++|++++.|++++++.+|...+++.++..
T Consensus 212 ea~~laDri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 252 (377)
T PRK11607 212 EAMTMAGRIA-IMNRGKFVQIGEPEEIYEHPTTRYSAEFIGS 252 (377)
T ss_pred HHHHhCCEEE-EEeCCEEEEEcCHHHHHhCCccHHHHHhcCc
Confidence 7789999996 5999999999999999999987777776653
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=302.10 Aligned_cols=180 Identities=20% Similarity=0.302 Sum_probs=158.3
Q ss_pred CCcEEEEEEEEEECCCc------eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC
Q 018829 72 GSLTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~------~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
+++++++||++.|..+. .+.|++| |||+|++||+++|||+||||||||.|+|.|+++ |++|+|.++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~---Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~ 73 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDG---VSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFE 73 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecc---eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEc
Confidence 46799999999996432 2578666 999999999999999999999999999999999 999999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 146 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 146 G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
|+++.. +. ..+..+++.++|+.+|+..+
T Consensus 74 g~~i~~---------------~~-------------------------------------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 74 GKDITK---------------LS-------------------------------------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred Ccchhh---------------cc-------------------------------------hhHHHHHHHHHHHHhCCCHH
Confidence 988751 00 13456789999999998764
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIi 279 (350)
++.++|++||||||||++||||| |||+|+||- |.|.++
T Consensus 102 ----------------~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 102 ----------------FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred ----------------HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 57999999999999999999999 999999873 999999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 328 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 328 (350)
||| ..+..+||||+ +|+.|+|++.|+.+++|.+|.|+||+.++.....
T Consensus 166 IsHDL~vv~~isdri~-VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 166 ISHDLSVVRYISDRIA-VMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEHHhhhhhcccEE-EEecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 999 46778999996 5999999999999999999999999999987544
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=300.00 Aligned_cols=210 Identities=18% Similarity=0.230 Sum_probs=171.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++++++|+++|+. ..|++| |||++++||+++||||||||||||+|+|+|+|+ |++|+|.++|++++.
T Consensus 3 ~lL~v~~l~k~FGG---l~Al~~---Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~- 70 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTAVND---VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITG- 70 (250)
T ss_pred ceeeeccceeecCC---EEEEec---eeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCC-
Confidence 67899999999986 678655 999999999999999999999999999999999 999999999999973
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhc-CCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...+.+.+..+...||..+.|.++ |.+|.......-.. +...+...+ ....++..+++.++|+.+||.+
T Consensus 71 --l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~------ 141 (250)
T COG0411 71 --LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-LSGLLGRPRARKEEREARERARELLEFVGLGE------ 141 (250)
T ss_pred --CCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-hhhhhccccchhhHHHHHHHHHHHHHHcCCch------
Confidence 333445556677788888888777 77777654321101 110000001 1234678899999999999999
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
.++++..+||+|||+|+.||||| |||.+++.+ |.||++|.|
T Consensus 142 -----------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 142 -----------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred -----------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 66999999999999999999999 999999742 699999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
+.+..+||||+ ||+.|+++++|+|+++.++|.
T Consensus 211 ~~Vm~l~dri~-Vl~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 211 KLVMGLADRIV-VLNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred HHHhhhccEEE-eccCCcCcccCCHHHHhcCHH
Confidence 68889999996 599999999999999988875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=344.62 Aligned_cols=233 Identities=8% Similarity=0.074 Sum_probs=181.0
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcE
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 108 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~ 108 (350)
.|..+...+....|+.++++.+++.... ....|+++||+|+|++.. .++ |+|+||+|++||.
T Consensus 432 ~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~~v---L~~isl~i~~Ge~ 507 (710)
T TIGR03796 432 FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPL---IENFSLTLQPGQR 507 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCC-CCc---ccceeEEEcCCCE
Confidence 4666677777788999999876553211 123589999999997533 134 6669999999999
Q ss_pred EEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL 188 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~ 188 (350)
+||+||||||||||+++|+|+++ |++|+|.+||.++. .+...+.+...++|+|+..++..
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~g 567 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPRE---------------EIPREVLANSVAMVDQDIFLFEG 567 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHH---------------HCCHHHHHhheeEEecCChhhhc
Confidence 99999999999999999999999 99999999999986 23334445555666666677777
Q ss_pred HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh----
Q 018829 189 WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---- 264 (350)
Q Consensus 189 ~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---- 264 (350)
++.+|+.++.. ...++++.++++.+++.+.+...++++...|+ +....||||||||++|||||
T Consensus 568 Ti~eNi~l~~~-------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~------e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 568 TVRDNLTLWDP-------TIPDADLVRACKDAAIHDVITSRPGGYDAELA------EGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred cHHHHhhCCCC-------CCCHHHHHHHHHHhCCHHHHHhCcCcccceec------cCCCCCCHHHHHHHHHHHHHhhCC
Confidence 77888875421 12345677788888887765555555555443 44568999999999999999
Q ss_pred -----chhhcCCCC-------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 265 -----NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 265 -----DEPts~Ld~-------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||++||. ++|+|+||| -...+.||||+ +|++|++++.|+++++++.
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Ii-vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEII-VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE-EEeCCEEEEecCHHHHHHc
Confidence 999999984 899999999 45566799995 5999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=341.49 Aligned_cols=232 Identities=13% Similarity=0.128 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|..++..+....|+.++++.+++.... ....++++||+|+|++.. .++ |+|+||+|++||.+||+||||
T Consensus 414 ~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sG 489 (686)
T TIGR03797 414 TLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDG-PLI---LDDVSLQIEPGEFVAIVGPSG 489 (686)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCC-ccc---eeeeEEEECCCCEEEEECCCC
Confidence 4566677777788999999876653221 123599999999996433 234 777999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+|+|+|+++ |++|+|.+||+++. .+...+.+...++|+|+..++..++.+|+.+
T Consensus 490 sGKSTLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~ 549 (686)
T TIGR03797 490 SGKSTLLRLLLGFET-----PESGSVFYDGQDLA---------------GLDVQAVRRQLGVVLQNGRLMSGSIFENIAG 549 (686)
T ss_pred CCHHHHHHHHhCCCC-----CCCCEEEECCEEcC---------------cCCHHHHHhccEEEccCCccCcccHHHHHhc
Confidence 999999999999999 99999999999986 1223333444444555555555566677665
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. ..++++.++++.+++.+.+...++++...|++ ....||||||||++||||| |||
T Consensus 550 ~~~--------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige------~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 550 GAP--------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISE------GGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CCC--------CCHHHHHHHHHHcCcHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 422 22456778899999887665555666664443 4568999999999999999 999
Q ss_pred hcCCCC-------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD-------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~-------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|++||. ++|+|+||| -...+.||+|+ +|++|++++.|+++++++.
T Consensus 616 TS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Ii-vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 616 TSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIY-VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred ccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999984 799999999 45557799995 5999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=337.05 Aligned_cols=230 Identities=12% Similarity=0.083 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHHHHHHHccchhccc-C-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRT-R-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~-~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
|......+.+..|+.++++.+++... . ....++++||+|.|.++.++ |+|+||+|++|+++||+|||
T Consensus 311 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~v-----L~~i~l~i~~G~~vaIvG~S 385 (588)
T PRK11174 311 YHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTL-----AGPLNFTLPAGQRIALVGPS 385 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCee-----eeeeEEEEcCCCEEEEECCC
Confidence 44556666677799999987643211 1 11249999999877544434 77799999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ ++|+|.+||.++. .+...+.+..+++|+|++.+|..++.+|+.
T Consensus 386 GsGKSTL~~lL~g~~p------~~G~I~i~g~~i~---------------~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~ 444 (588)
T PRK11174 386 GAGKTSLLNALLGFLP------YQGSLKINGIELR---------------ELDPESWRKHLSWVGQNPQLPHGTLRDNVL 444 (588)
T ss_pred CCCHHHHHHHHhcCCC------CCcEEEECCEecc---------------cCCHHHHHhheEEecCCCcCCCcCHHHHhh
Confidence 9999999999999984 5799999999986 233334444455566666666667777777
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ...++++.++++.+++++.+...++++...|++. ...||||||||++||||| ||
T Consensus 445 ~g~~-------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~------G~~LSGGQrQRialARAll~~~~IliLDE 511 (588)
T PRK11174 445 LGNP-------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ------AAGLSVGQAQRLALARALLQPCQLLLLDE 511 (588)
T ss_pred cCCC-------CCCHHHHHHHHHHhCHHHHHHhcccccccccccC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6532 1234567777888888776655566666655444 557999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|||+||. ++|+|+||| -...+.||+|+ +|++|++++.|+|++++..
T Consensus 512 ~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii-vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW-VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred CccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE-EEeCCeEeecCCHHHHHhc
Confidence 9999884 799999999 45567799995 5999999999999999765
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=314.92 Aligned_cols=206 Identities=12% Similarity=0.166 Sum_probs=165.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~i~~l~~~~~~---~~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~- 69 (369)
T PRK11000 2 ASVTLRNVTKAYGD---VVI---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND- 69 (369)
T ss_pred CEEEEEEEEEEeCC---eEE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC-
Confidence 46899999999974 234 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 70 -----~~~~~~~i~~v~Q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~-------- 125 (369)
T PRK11000 70 -----VPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAH-------- 125 (369)
T ss_pred -----CCHhHCCEEEEeCCcccCCCC----------CHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 111123466777765554332 4445555543321 1233455678899999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
++++++.+||||||||++||||| |||+++||. +.|+|++|| ++
T Consensus 126 ---------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (369)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 56899999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+..+||+++ +|++|++++.|++++++..|.....+.++.
T Consensus 197 ~~~~~d~i~-vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 197 AMTLADKIV-VLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 788999996 599999999999999999888777666555
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=343.32 Aligned_cols=233 Identities=12% Similarity=0.124 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
.|..++..+.+..|+.++++.+++.... ....|+++||+|+|+++.++ |+|+||+|++|+.+||+||
T Consensus 434 ~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~isl~i~~G~~vaIvG~ 508 (708)
T TIGR01193 434 LQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNI-----LSDISLTIKMNSKTTIVGM 508 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcc-----eeceeEEECCCCEEEEECC
Confidence 4666777778888999999877653221 12359999999999744334 6779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|+|+++ |++|+|.+||.++. .+...+.+...++|+|+..++..++.+|+
T Consensus 509 SGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 568 (708)
T TIGR01193 509 SGSGKSTLAKLLVGFFQ-----ARSGEILLNGFSLK---------------DIDRHTLRQFINYLPQEPYIFSGSILENL 568 (708)
T ss_pred CCCCHHHHHHHHhccCC-----CCCcEEEECCEEHH---------------HcCHHHHHHheEEEecCceehhHHHHHHH
Confidence 99999999999999999 99999999999986 23344445556666777777777888888
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.++.. ....++++.++++.+++.+.+.+.++++...| ......||||||||++||||| |
T Consensus 569 ~l~~~------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i------~e~G~~LSgGQrQRialARall~~p~iliLD 636 (708)
T TIGR01193 569 LLGAK------ENVSQDEIWAACEIAEIKDDIENMPLGYQTEL------SEEGSSISGGQKQRIALARALLTDSKVLILD 636 (708)
T ss_pred hccCC------CCCCHHHHHHHHHHhCCHHHHHhcccccCcEe------cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 86521 11234556777888888765544455555544 334568999999999999999 9
Q ss_pred hhhcCCCC--------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 266 CPYLSFRD--------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 266 EPts~Ld~--------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|||++||. ++|+|+||| ....+.||+|+ +|++|++++.|+++++++.
T Consensus 637 E~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~-~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 637 ESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKII-VLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEE-EEECCEEEEECCHHHHHhc
Confidence 99999874 799999999 45667899996 5999999999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=297.05 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=152.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+. .++ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~ 69 (235)
T cd03261 1 IELRGLTKSFGG---RTV---LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLSE 69 (235)
T ss_pred CeEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccCh
Confidence 478999999964 234 677999999999999999999999999999999999 999999999998751100
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
......++.++|++|+...+..+ ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 70 -~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 128 (235)
T cd03261 70 -AELYRLRRRMGMLFQSGALFDSL----------TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG---------- 128 (235)
T ss_pred -hhHHHHhcceEEEccCcccCCCC----------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch----------
Confidence 00011123456666665444322 444555443221111223445667888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 129 -------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 129 -------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred -------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+||+++ +|++|++++.|++++++..
T Consensus 202 ~~~d~v~-~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 202 AIADRIA-VLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCEEE-EEECCeEEEecCHHHHcCC
Confidence 8999996 5999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=310.88 Aligned_cols=226 Identities=13% Similarity=0.191 Sum_probs=167.0
Q ss_pred CcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++|+++||+++|+.+ ....+ |+++||+|++||+++|+|+||||||||+++|+|+++.. ..|++|+|.++|+++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR 77 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence 579999999999532 12456 55599999999999999999999999999999998621 11589999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhh---c-C-CCcHHHHHHHHHHHHHcCCCCc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVI---R-R-SDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~---~-~-~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
....+...+.++.+++++|+.... +.+ .++.+++.+..... . . ......++++.++++.+||.+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~---------l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~ 148 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSC---------LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH 148 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchh---------cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh
Confidence 111111122334677888876421 111 13333333221110 0 0 1113445678899999999752
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIi 279 (350)
. ..++++|++||||||||++||||| ||||++||. |.|||+
T Consensus 149 ~--------------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~ 214 (330)
T PRK15093 149 K--------------DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL 214 (330)
T ss_pred H--------------HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1 145899999999999999999999 999999873 799999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
||| ..+.++||||+ +|++|+|++.|++++++..|.++|++.++...
T Consensus 215 itHdl~~v~~~~dri~-vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~~ 262 (330)
T PRK15093 215 ISHDLQMLSQWADKIN-VLYCGQTVETAPSKELVTTPHHPYTQALIRAI 262 (330)
T ss_pred EECCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999 57778999996 59999999999999999999999988777654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=349.46 Aligned_cols=235 Identities=14% Similarity=0.186 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEc
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 113 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvG 113 (350)
....+...+.++.++.++++..+.+... ....++++||+|+|+....+++ |+++||.|++|+++||||
T Consensus 310 ~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~I---l~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 310 HLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKI---LKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred chHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchh---hCCeEEEeCCCCEEEEEC
Confidence 4456677777888999999877765332 2346999999999986544556 455999999999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhh
Q 018829 114 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 193 (350)
Q Consensus 114 pnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~ 193 (350)
||||||||++++|.|+|+ |++|+|.+||.|+. .+...+.+..+++|.|.+.+|..++.+|
T Consensus 387 ~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~---------------~~~~~~lr~~iglV~QePvlF~~tI~eN 446 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIR---------------NLNLKWLRSQIGLVSQEPVLFATTIREN 446 (1228)
T ss_pred CCCCCHHHHHHHHHHhcC-----CCCceEEEcCccch---------------hcchHHHHhhcCeeeechhhhcccHHHH
Confidence 999999999999999999 99999999999987 4556667777888888888888899999
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------
Q 018829 194 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--------- 264 (350)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--------- 264 (350)
|.+|.. ...++++.+++++++..+.+..-++++.+.|.+ ...+||||||||+||||||
T Consensus 447 I~~G~~-------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge------~g~qLSGGQKQRIAIARalv~~P~ILLL 513 (1228)
T KOG0055|consen 447 IRYGKP-------DATREEIEEAAKAANAHDFILKLPDGYDTLVGE------RGVQLSGGQKQRIAIARALVRNPKILLL 513 (1228)
T ss_pred HhcCCC-------cccHHHHHHHHHHccHHHHHHhhHHhhcccccC------CCCCCChHHHHHHHHHHHHHhCCCEEEe
Confidence 998765 344566777777777666555555555554444 4457999999999999999
Q ss_pred chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 265 NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 265 DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
|||||+||. |+|.|+|+| -...+.||+|+ +|++|+|++.|+|+|++..+
T Consensus 514 DEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~-v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 514 DEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIA-VMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred cCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEE-EEECCEEEEecCHHHHHhcc
Confidence 999999984 999999999 34556699996 59999999999999999886
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=312.88 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=162.7
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++||+++|+.+. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 589999999997211 1345 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .......++.++|++|+...+... ++.+|+.++.... ..+....++++.++++.+|+.+
T Consensus 73 ~-~~~~~~~~~~ig~v~q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 132 (343)
T PRK11153 73 S-EKELRKARRQIGMIFQHFNLLSSR----------TVFDNVALPLELA-GTPKAEIKARVTELLELVGLSD-------- 132 (343)
T ss_pred C-HHHHHHHhcCEEEEeCCCccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 1 011111133566777765544322 4445554433211 1223455677889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ---------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 133 ---------KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45899999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+.++||+++ +|++|++++.|++++++..+..+.++.+..
T Consensus 204 i~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 204 VKRICDRVA-VIDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 778999996 599999999999999988776555544443
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=339.48 Aligned_cols=233 Identities=15% Similarity=0.154 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
.|..+...+....|+.++++.+++.... ..+.|+++||+|+|++... ++ |+|+||+|++||++||+||
T Consensus 424 ~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~-~v---L~~i~l~i~~G~~iaIvG~ 499 (694)
T TIGR03375 424 LLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET-PA---LDNVSLTIRPGEKVAIIGR 499 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCc-cc---eeeeeEEECCCCEEEEECC
Confidence 4566677777788999999887653211 1235999999999964321 23 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|+|+|+ |++|+|.+||.++. .+...+.+...++|+|+..++..++.+|+
T Consensus 500 sGsGKSTLlklL~gl~~-----p~~G~I~idg~~l~---------------~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi 559 (694)
T TIGR03375 500 IGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVDIR---------------QIDPADLRRNIGYVPQDPRLFYGTLRDNI 559 (694)
T ss_pred CCCCHHHHHHHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence 99999999999999999 99999999999986 23344455556667777777777888888
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.++.. ...++++.++++.+++.+.+...++++...|+ +....||||||||++||||| |
T Consensus 560 ~~~~~-------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~------e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 560 ALGAP-------YADDEEILRAAELAGVTEFVRRHPDGLDMQIG------ERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred hCCCC-------CCCHHHHHHHHHHcChHHHHHhCcccccceec------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 76532 12345677788888887766555556655444 34568999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|||++||. ++|+|+||| -...+.||+|+ +|++|++++.|+|+++++.
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii-vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII-VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EEeCCEEEeeCCHHHHHHH
Confidence 99999984 799999999 45567899995 5999999999999998654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=331.83 Aligned_cols=232 Identities=12% Similarity=0.121 Sum_probs=180.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|..++..+.+..|+.++++.+++.... ..+.++++||+|+|+++.. ++ |+|+||+|++||+++|+|||
T Consensus 300 ~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~i~~~i~~G~~~aivG~s 375 (574)
T PRK11160 300 AFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQ-PV---LKGLSLQIKAGEKVALLGRT 375 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCC-cc---eecceEEECCCCEEEEECCC
Confidence 3455566667777999999876553211 1245999999999975321 24 67799999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|.++. .+...+.+...++|+|++.++..++.+|+.
T Consensus 376 GsGKSTL~~ll~g~~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 376 GCGKSTLLQLLTRAWD-----PQQGEILLNGQPIA---------------DYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred CCCHHHHHHHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 9999999999999999 99999999999986 123333444455566666666667778887
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ...++++.++++.+++.+.+.. ++++...|++ ....||||||||++||||| ||
T Consensus 436 ~~~~-------~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge------~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 436 LAAP-------NASDEALIEVLQQVGLEKLLED-DKGLNAWLGE------GGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred cCCC-------ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6532 2234667888999999887655 6676664444 4568999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. ++|+|+||| ....+.||+|+ +|++|++++.|+|+++++.
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC-VMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE-EEeCCeEEEeCCHHHHHhc
Confidence 9999873 799999999 34456699995 5999999999999999765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=307.77 Aligned_cols=228 Identities=16% Similarity=0.185 Sum_probs=195.2
Q ss_pred CCCcEEEEEEEEEECC-CceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 71 IGSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~-~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++++++|+++.|.. +..+.++++ |||+|.+||++||||+||||||-..+.|+|+++.+....-+|+|.|+|.++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~---isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKG---ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeecc---ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 3578999999999952 334778666 999999999999999999999999999999998655455679999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
-..+..+.+.++...++++||+++.. +.+ .++...+...+..|++..+++.++++.++|+.+|+.+.
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtS---------LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--- 147 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTS---------LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--- 147 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccc---------cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch---
Confidence 65444555566677888888888764 222 37888888888999998899999999999999999752
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH 282 (350)
...++.||++|||||||||+||+|| ||||.+||- |+.+++|||
T Consensus 148 -----------~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITH 216 (534)
T COG4172 148 -----------EKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216 (534)
T ss_pred -----------hhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEec
Confidence 1267999999999999999999999 999999872 999999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
..+.++||||+| |.+|+++|.|+++++|..|+++||+.++..
T Consensus 217 DL~iVr~~ADrV~V-M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 217 DLGIVRKFADRVYV-MQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred cHHHHHHhhhhEEE-EeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 578899999975 999999999999999999999999888764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=309.09 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=182.1
Q ss_pred CCCcEEEEEEEEEECCC--------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE
Q 018829 71 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 142 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~--------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I 142 (350)
..++++.+++...|+-+ ....|+++ +||++++||.+||||+||||||||-.+|.++++ ++ |+|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~---isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I 343 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDG---ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEI 343 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEecc---ceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceE
Confidence 45689999999999521 12568777 999999999999999999999999999999997 55 999
Q ss_pred EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhc-CCCcHHHHHHHHHHHHHc
Q 018829 143 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKI 220 (350)
Q Consensus 143 ~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~~ 220 (350)
.|+|+++...+.. .....|+.+.++|||+.+. +.+. ++.+-|..|+..+. ..+..+..+++.++|+.+
T Consensus 344 ~F~G~~i~~~~~~-~mrplR~~mQvVFQDPygS---------LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 344 RFDGQDIDGLSRK-EMRPLRRRMQVVFQDPYGS---------LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred EECCccccccChh-hhhhhhhhceEEEeCCCCC---------CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 9999999743322 2223355677888887654 2222 66666777777766 456678889999999999
Q ss_pred CCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------C
Q 018829 221 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 274 (350)
Q Consensus 221 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g 274 (350)
||++.. .++||+++|||||||+|||||+ |||||+||. +
T Consensus 414 GLDp~~----------------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~ 477 (534)
T COG4172 414 GLDPAT----------------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG 477 (534)
T ss_pred CCChhH----------------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC
Confidence 999753 5999999999999999999998 999999873 8
Q ss_pred ceEEEEech--HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 275 KPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 275 ~TVIiiTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
.+.++|||| .+..+||+|+ ||++|+|+|+|+.+++|++|+++||+.++...
T Consensus 478 LsYLFISHDL~VvrAl~~~vi-Vm~~GkiVE~G~~~~if~~P~~~YT~~L~~aa 530 (534)
T COG4172 478 LSYLFISHDLAVVRALCHRVI-VMRDGKIVEQGPTEAVFANPQHEYTRALLAAA 530 (534)
T ss_pred CeEEEEeccHHHHHHhhceEE-EEeCCEEeeeCCHHHHhcCCCcHHHHHHHHhh
Confidence 999999994 6678999996 59999999999999999999999999887653
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=332.06 Aligned_cols=234 Identities=12% Similarity=0.130 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|..+...+....|+.++++.+++.... ....++++||+|+|+++.. ++ |+|+||+|++||.+||+||||
T Consensus 304 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~~aIvG~sG 379 (582)
T PRK11176 304 VNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEV-PA---LRNINFKIPAGKTVALVGRSG 379 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCC-cc---ccCceEEeCCCCEEEEECCCC
Confidence 4556666666777999999766442211 1235999999999975421 34 666999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+++|+|+++ |++|+|.+||.++. .+...+.+...++++|++.++..++.+|+.+
T Consensus 380 sGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~ 439 (582)
T PRK11176 380 SGKSTIANLLTRFYD-----IDEGEILLDGHDLR---------------DYTLASLRNQVALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred CCHHHHHHHHHhccC-----CCCceEEECCEEhh---------------hcCHHHHHhhceEEccCceeecchHHHHHhc
Confidence 999999999999999 99999999999986 2233333444555666666666677777775
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. ....++++.++++.+++.+.+....+++...|+ .....||||||||++||||| |||
T Consensus 440 ~~~------~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig------~~g~~LSGGqrQRi~LARall~~~~ililDEp 507 (582)
T PRK11176 440 ART------EQYSREQIEEAARMAYAMDFINKMDNGLDTVIG------ENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_pred CCC------CCCCHHHHHHHHHHhCcHHHHHhcccccCceeC------CCCCcCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 432 112345677778888877654444445555443 34567999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|++||+ ++|+|+||| ....+.||+|+ +|++|++++.|+++++++.
T Consensus 508 tsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii-~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL-VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEeCCHHHHHhC
Confidence 999984 799999999 45667899995 5999999999999999765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=339.74 Aligned_cols=235 Identities=11% Similarity=0.127 Sum_probs=177.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|......+.+..|+.++++.+++.... ..+.|+++||+|+|++....++ |+|+||+|++||+++|+|||
T Consensus 440 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~S 516 (711)
T TIGR00958 440 VYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV---LKGLTFTLHPGEVVALVGPS 516 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc---ccCceEEEcCCCEEEEECCC
Confidence 3455566667777999999876553211 1235999999999974321234 66699999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|.|+++ |++|+|.+||+++. .+...+.+..+++|+|++.++..++.+|+.
T Consensus 517 GsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~ 576 (711)
T TIGR00958 517 GSGKSTVAALLQNLYQ-----PTGGQVLLDGVPLV---------------QYDHHYLHRQVALVGQEPVLFSGSVRENIA 576 (711)
T ss_pred CCCHHHHHHHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHhhceEEecCccccccCHHHHHh
Confidence 9999999999999999 99999999999986 122333334445555555666667777777
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ...++++.++++.+++.+.+.+..+++...++ .....||||||||++||||| ||
T Consensus 577 ~g~~-------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig------e~G~~LSGGQkQRlalARALl~~p~ILILDE 643 (711)
T TIGR00958 577 YGLT-------DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG------EKGSQLSGGQKQRIAIARALVRKPRVLILDE 643 (711)
T ss_pred cCCC-------CCCHHHHHHHHHHcCCHHHHHhCCCccCCccc------CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 6532 11245677788888887755444455555433 34568999999999999999 99
Q ss_pred hhcCCCC-------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 267 PYLSFRD-------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 267 Pts~Ld~-------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
||++||. ++|+|+||| -...+.||+|+ +|++|+|++.|+|++++++.
T Consensus 644 pTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~Ii-vL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 644 ATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQIL-VLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred cccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEE-EEECCEEEEeeCHHHHHhCC
Confidence 9999883 799999999 34556799995 59999999999999998753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=316.34 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=154.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++......+.....++.++|++|+...+
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 667999999999999999999999999999999999 999999999999862111111111234566666665544
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 255 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 255 (350)
..+ ++.+|+.++.... ..+..+..+++.++++.+||+. +++++|.+||||||
T Consensus 84 ~~~----------TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~-----------------~~~~~p~~LSGGq~ 135 (363)
T TIGR01186 84 PHM----------TILQNTSLGPELL-GWPEQERKEKALELLKLVGLEE-----------------YEHRYPDELSGGMQ 135 (363)
T ss_pred CCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCch-----------------hhhCChhhCCHHHH
Confidence 332 4555555544322 2234556778899999999987 56999999999999
Q ss_pred HHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCc
Q 018829 256 YNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 256 QRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
||++||||| |||+++||+ ++|||+||| +++.++||||+ +|++|++++.|++
T Consensus 136 QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~-vl~~G~iv~~g~~ 214 (363)
T TIGR01186 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV-IMKAGEIVQVGTP 214 (363)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEeCCEEEeeCCH
Confidence 999999999 999999874 799999999 57889999996 5999999999999
Q ss_pred cccccCCCCCChHHHHH
Q 018829 308 KQIFDIPESSDPENELI 324 (350)
Q Consensus 308 ~~l~~~~~~~~~~~~~~ 324 (350)
++++.+|..++.+.++.
T Consensus 215 ~ei~~~p~~~~~~~~~~ 231 (363)
T TIGR01186 215 DEILRNPANEYVEEFIG 231 (363)
T ss_pred HHHHhCcccHHHHHHhh
Confidence 99999988777666654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=331.08 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=176.5
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC-----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
|...........|+.++++.+++.... ....++++|++|+|+++.++ |+|+||+|++||++||+|+||||
T Consensus 305 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~i-----l~~i~l~i~~Ge~iaIvG~SGsG 379 (592)
T PRK10790 305 QSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLV-----LQNINLSVPSRGFVALVGHTGSG 379 (592)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCce-----eeceeEEEcCCCEEEEECCCCCC
Confidence 555666667777999999866442111 12359999999999754334 67799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 198 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~ 198 (350)
||||+++|+|+++ |++|+|.+||.++. .+.....+..+++|+|++.+|..++.+|+.++.
T Consensus 380 KSTLl~lL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 380 KSTLASLLMGYYP-----LTEGEIRLDGRPLS---------------SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred HHHHHHHHhcccC-----CCCceEEECCEEhh---------------hCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence 9999999999999 99999999999986 233333444455556666666667777776542
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhc
Q 018829 199 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 269 (350)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts 269 (350)
. ..++++.++++.+|+.+.+..-++++...++ +....||||||||++||||| ||||+
T Consensus 440 ~--------~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~------e~g~~LSGGqrQRialARaLl~~~~illlDEpts 505 (592)
T PRK10790 440 D--------ISEEQVWQALETVQLAELARSLPDGLYTPLG------EQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505 (592)
T ss_pred C--------CCHHHHHHHHHHcCcHHHHHhcccccccccc------CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 1 1235677888888887755444455555433 34567999999999999999 99999
Q ss_pred CCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 270 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 270 ~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+||+ ++|+|+||| -...+.||+|+ +|++|++++.|+++++++.
T Consensus 506 ~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii-~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 506 NIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTIL-VLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEEcCHHHHHhC
Confidence 9874 799999999 45566799995 5999999999999999865
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=345.07 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 46 SLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 46 ~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.+.-.+.++.++.++++.++.+... ..+-|+++||+|+|+....+++ |+|+||+|++|+.+|||||||
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~I---l~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPV---LNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchh---hcCCcEEecCCCEEEEECCCC
Confidence 3455667778999999988754332 2235999999999986544666 555999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
|||||.+.+|.++|+ |++|.|.+||+|+. .+.+..+|...++|.|.+.||..++.+||.+
T Consensus 1027 sGKSTvI~LLeRfYd-----p~~G~V~IDg~dik---------------~lnl~~LR~~i~lVsQEP~LF~~TIrENI~Y 1086 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYD-----PDAGKVKIDGVDIK---------------DLNLKWLRKQIGLVSQEPVLFNGTIRENIAY 1086 (1228)
T ss_pred CCHHHHHHHHHHhcC-----CCCCeEEECCcccc---------------cCCHHHHHHhcceeccCchhhcccHHHHHhc
Confidence 999999999999999 99999999999997 5677778888888999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
|.. + ..++++.++++.+++.+.+..=+++++..|+++ ..+||||||||+|||||+ ||.
T Consensus 1087 G~~------~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGer------G~QLSGGQKQRIAIARAilRnPkILLLDEA 1153 (1228)
T KOG0055|consen 1087 GSE------E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGER------GVQLSGGQKQRIAIARAILRNPKILLLDEA 1153 (1228)
T ss_pred cCC------C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcc------cCcCCchHHHHHHHHHHHHcCCCeeeeecc
Confidence 822 1 345678888999888887777778888866655 559999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 268 YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
||+||- |+|.|+|+| -...+.||.|+ |+++|+|+|.|+|+++++ +.-.|
T Consensus 1154 TSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~-Vi~~G~VvE~GtH~~L~~-~~G~Y 1218 (1228)
T KOG0055|consen 1154 TSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIA-VLKNGKVVEQGTHDELLA-KRGIY 1218 (1228)
T ss_pred chhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEE-EEECCEEEecccHHHHHh-CCCch
Confidence 999872 999999999 56778999996 599999999999999998 44344
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=293.74 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=158.8
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-----ccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~~ 148 (350)
+++++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEA---LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECC---eee---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 5789999999974 234 666999999999999999999999999999999999 88 9999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 149 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 149 i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
+... .......++.++|++|+...+...+. +|+.++.......+..+..+.+.++++.+|+.+.+
T Consensus 70 ~~~~--~~~~~~~~~~i~~v~q~~~~~~~tv~-----------e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 134 (247)
T TIGR00972 70 IYDK--KIDVVELRRRVGMVFQKPNPFPMSIY-----------DNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-- 134 (247)
T ss_pred cccc--ccchHHHHhheEEEecCcccCCCCHH-----------HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--
Confidence 7520 00011113356777776554432244 44443322111112344556788899999997311
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-- 282 (350)
...+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 135 -----------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 135 -----------KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred -----------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 0045889999999999999999999 999999874 689999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
+.+..+||+++ +|++|++++.|++++++..+.++.+..+
T Consensus 204 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 242 (247)
T TIGR00972 204 QQAARISDRTA-FFYDGELVEYGPTEQIFTNPKEKRTEDY 242 (247)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHHH
Confidence 56778999996 5999999999999999887766654443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=293.46 Aligned_cols=211 Identities=20% Similarity=0.250 Sum_probs=159.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++||+++|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (250)
T PRK11264 2 SAIEVKNLVKKFHG-Q--TV---LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTA 70 (250)
T ss_pred CcEEEeceEEEECC-e--ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcccc
Confidence 47999999999974 2 34 666999999999999999999999999999999999 9999999999987521
Q ss_pred cccc----ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 153 YFLQ----EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 153 ~~~~----~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
.... .....+..++|++|+...+... ++.+|+.++.............+++.++++.+|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 136 (250)
T PRK11264 71 RSLSQQKGLIRQLRQHVGFVFQNFNLFPHR----------TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG---- 136 (250)
T ss_pred ccccchhhHHHHhhhhEEEEecCcccCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc----
Confidence 0000 0011123456777765444322 334444332211111223345567888999999987
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
..++.+.+||||||||++||||| ||||++||. +.|||++||
T Consensus 137 -------------~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 137 -------------KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred -------------hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
+.+..+||+++ +|++|++++.|++++++..+.+++++.+
T Consensus 204 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 243 (250)
T PRK11264 204 MSFARDVADRAI-FMDQGRIVEQGPAKALFADPQQPRTRQF 243 (250)
T ss_pred HHHHHHhcCEEE-EEECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence 56778999996 5999999999999999887766655443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=300.93 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=157.0
Q ss_pred cEEEEEEEEEECCCce--EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~--~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
||+++|++++|+.+.. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA---LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 5899999999964321 124 667999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..........++.+++++|+... .++..++.+|+.++.... ..+..+.++++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~------ 136 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPES---------QLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADE------ 136 (288)
T ss_pred ccccccHHHHHhhEEEEecCcch---------hcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChh------
Confidence 10000011112345566665310 223335667776654432 22345566778899999999632
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
++++.+..||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 137 ----------~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 137 ----------FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred ----------hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45889999999999999999999 999999874 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+..+||||+ +|++|++++.|++++++..
T Consensus 207 ~~~~~dri~-~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 207 VADYADYVY-LLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHcC
Confidence 778999996 5999999999999998764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=305.46 Aligned_cols=209 Identities=18% Similarity=0.202 Sum_probs=158.9
Q ss_pred CCCcEEEEEEEEEECCCc--eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 71 IGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
..++|+++|++++|+.+. ..++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~ 89 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVA---LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIY 89 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEE
Confidence 346899999999996431 1234 677999999999999999999999999999999999 999999999998
Q ss_pred CCCCccc------------cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHH
Q 018829 149 GDGTYFL------------QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK 216 (350)
Q Consensus 149 i~~~~~~------------~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~ 216 (350)
+...... ......++.+++++|+.. ..++..++.+|+.++.... ..+..+..+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~---------~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~ 159 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE---------YQLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFY 159 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECch---------hccccchHHHHHHhhHHhc-CCCHHHHHHHHHHH
Confidence 7421000 000011223455555431 0233446677776664322 22344556778899
Q ss_pred HHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC--------------
Q 018829 217 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 273 (350)
Q Consensus 217 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------- 273 (350)
++.+++... +.++.+.+||||||||++||||| ||||++||.
T Consensus 160 l~~~gL~~~----------------~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~ 223 (320)
T PRK13631 160 LNKMGLDDS----------------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK 223 (320)
T ss_pred HHHcCCChh----------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 999999631 45889999999999999999999 999999874
Q ss_pred --CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 274 --DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 274 --g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
++|||+||| +.+.++|||++ +|++|++++.|++++++..+
T Consensus 224 ~~g~TiiivtHd~~~~~~~adri~-vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 224 ANNKTVFVITHTMEHVLEVADEVI-VMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred HCCCEEEEEecCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 789999999 46778999996 59999999999999987764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=298.92 Aligned_cols=195 Identities=15% Similarity=0.221 Sum_probs=151.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++|++++|+.+. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 72 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT--KA---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVNAE 72 (274)
T ss_pred ceEEEEEEEEEeCCCC--ee---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 4799999999996333 34 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ... .++.++|++|+... .++..++.+|+.++.... .......++++.++++.+++.+
T Consensus 73 ~---~~~-~~~~i~~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-------- 130 (274)
T PRK13647 73 N---EKW-VRSKVGLVFQDPDD---------QVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWD-------- 130 (274)
T ss_pred C---HHH-HHhhEEEEecChhh---------hhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH--------
Confidence 0 001 12245666665421 122225556666543321 2223455667889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 131 ---------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 131 ---------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56899999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccc
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
.++|||++ +|++|++++.|++++
T Consensus 202 ~~~~d~i~-~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 202 AEWADQVI-VLKEGRVLAEGDKSL 224 (274)
T ss_pred HHhCCEEE-EEECCEEEEECCHHH
Confidence 78999996 599999999999864
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=300.97 Aligned_cols=202 Identities=14% Similarity=0.189 Sum_probs=156.2
Q ss_pred cEEEEEEEEEECCCc--eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.|+++||+++|+... ..++ |+++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA---LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 389999999996421 1234 667999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC--Cccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIRK 229 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~~~~ 229 (350)
.. ......++.++|++|++.. .++..++.+|+.++.... ..+.++..+++.++++.+|+. +
T Consensus 74 ~~--~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~----- 136 (287)
T PRK13637 74 KK--VKLSDIRKKVGLVFQYPEY---------QLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYED----- 136 (287)
T ss_pred cC--ccHHHHhhceEEEecCchh---------ccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchh-----
Confidence 10 0000112355666665421 122335566666554322 233455667888999999997 4
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+.++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 ------------~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 137 ------------YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred ------------hccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+..+|||++ +|++|++++.|++++++..
T Consensus 205 ~~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 205 MEDVAKLADRII-VMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 56778999996 5999999999999988764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=292.18 Aligned_cols=208 Identities=18% Similarity=0.216 Sum_probs=158.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~-~--~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~- 68 (240)
T PRK09493 1 MIEFKNVSKHFGP-T--QV---LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDP- 68 (240)
T ss_pred CEEEEeEEEEECC-e--EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcC-
Confidence 5789999999964 2 34 666999999999999999999999999999999999 9999999999987510
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.......++.++|++|+...+... ++.+|+.++.............+++.++++.+|+.+
T Consensus 69 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------- 128 (240)
T PRK09493 69 -KVDERLIRQEAGMVFQQFYLFPHL----------TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE--------- 128 (240)
T ss_pred -ChhHHHHhhceEEEecccccCCCC----------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH---------
Confidence 000011123466777765444322 333444333211111223445567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
.+++.+..||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 129 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 200 (240)
T PRK09493 129 --------RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAE 200 (240)
T ss_pred --------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5777
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.+||+++ +|++|++++.|++++++..+.++.+..+
T Consensus 201 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 235 (240)
T PRK09493 201 KVASRLI-FIDKGRIAEDGDPQVLIKNPPSQRLQEF 235 (240)
T ss_pred HhCCEEE-EEECCEEEeeCCHHHHhcCCchHHHHHH
Confidence 8999996 5999999999999988877666554443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.77 Aligned_cols=203 Identities=15% Similarity=0.242 Sum_probs=156.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~- 69 (239)
T cd03296 2 SIEVRNVSKRFGD-F--VA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATDV- 69 (239)
T ss_pred EEEEEeEEEEECC-E--Ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcC-
Confidence 4899999999974 2 34 677999999999999999999999999999999999 9999999999987511
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC---CCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...++.++|++|+...+... ++.+|+.++...... .......+++.++++.+++.+
T Consensus 70 -----~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 128 (239)
T cd03296 70 -----PVQERNVGFVFQHYALFRHM----------TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW------ 128 (239)
T ss_pred -----CccccceEEEecCCcccCCC----------CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh------
Confidence 11123466777765444322 334444433211110 012334566788999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 129 -----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 129 -----------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred -----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
+.+..+||+++ +|++|++++.|++++++..+.++.+..
T Consensus 198 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (239)
T cd03296 198 EEALEVADRVV-VMNKGRIEQVGTPDEVYDHPASPFVYS 235 (239)
T ss_pred HHHHHhCCEEE-EEECCeEEEecCHHHHhcCCCcHHHHH
Confidence 56778999996 599999999999999887666555433
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=298.42 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=157.0
Q ss_pred EEEEEEEEEECCCc--eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 75 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 75 l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++||+++|+... ..++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 89999999996421 1234 677999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.........++.++|++|++.. .++..++.+|+.++.... ..+....++++.++++.++|.+.
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (290)
T PRK13634 75 KKNKKLKPLRKKVGIVFQFPEH---------QLFEETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEE------- 137 (290)
T ss_pred cccchHHHHHhhEEEEeeCchh---------hhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChh-------
Confidence 0000001112245566655311 233346777777664422 22344556778899999999732
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
++++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 138 ---------LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+.++||||+ +|++|++++.|++++++..+
T Consensus 209 ~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 209 AARYADQIV-VMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 778999996 59999999999999887654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=310.31 Aligned_cols=215 Identities=13% Similarity=0.171 Sum_probs=165.0
Q ss_pred CcEEEEEEEEEECCCce---------------------EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAW---------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~---------------------~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|+++||++.|++... ..+ |+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLG---VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEE---EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46888888888865320 125 666999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH
Q 018829 132 NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 211 (350)
Q Consensus 132 ~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~ 211 (350)
|++|+|.++|.++......+.....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++
T Consensus 80 -----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~----------Tv~enl~~~~~~~-~~~~~~~~~ 143 (400)
T PRK10070 80 -----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM----------TVLDNTAFGMELA-GINAEERRE 143 (400)
T ss_pred -----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC----------CHHHHHHHHHHhc-CCCHHHHHH
Confidence 999999999998752110000111233567777765544332 4445554443221 122345567
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~--------- 273 (350)
++.++++.+|+.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~e~L~~~gL~~-----------------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 144 KALDALRQVGLEN-----------------YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHHHHHHcCCCh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 7889999999987 56899999999999999999999 999999874
Q ss_pred --------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 --------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 --------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
++|||++|| +.+.++||+++ +|++|++++.|++++++..|...+.+.++.
T Consensus 207 L~~l~~~~g~TIIivTHd~~~~~~~~Dri~-vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIA-IMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHhCCEEE-EEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 789999999 57788999996 599999999999999998887777666654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=290.15 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=156.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+++++|++++|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 70 (241)
T PRK14250 2 NEIEFKEVSYSSFG-K--EI---LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIKTI 70 (241)
T ss_pred ceEEEEeEEEEeCC-e--ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 46899999999964 2 34 677999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.. ...++.++|++|+. .++..++.+|+.++.... . ...+++.++++.+++...
T Consensus 71 ---~~-~~~~~~i~~~~q~~-----------~~~~~tv~e~l~~~~~~~---~--~~~~~~~~~l~~~~l~~~------- 123 (241)
T PRK14250 71 ---DV-IDLRRKIGMVFQQP-----------HLFEGTVKDNIEYGPMLK---G--EKNVDVEYYLSIVGLNKE------- 123 (241)
T ss_pred ---Ch-HHhhhcEEEEecCc-----------hhchhhHHHHHhcchhhc---C--cHHHHHHHHHHHcCCCHH-------
Confidence 00 01122445555553 333346666666543211 1 123467788999999631
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+.++.+.+||||||||++||||| |||+++||. |.|||++|| +.
T Consensus 124 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 124 ---------YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 35889999999999999999999 999999863 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+||+++ +|++|++++.|++++++..+.+++.+.++
T Consensus 195 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 195 AKRIGDYTA-FLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred HHHhCCEEE-EEeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 778999996 59999999999999998877666554443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=292.40 Aligned_cols=219 Identities=16% Similarity=0.184 Sum_probs=160.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYTD-F--KA---LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeCC-c--ee---ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 468999999999974 2 34 66699999999999999999999999999999999811001258999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. . .....++.++|++|+...+.. ++.+|+.++............++.+.++++.+++.+.+
T Consensus 79 ~~-~-~~~~~~~~i~~v~q~~~~~~~-----------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 140 (254)
T PRK14273 79 NN-F-DILELRRKIGMVFQTPNPFLM-----------SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV----- 140 (254)
T ss_pred cc-c-cHHHHhhceEEEeeccccccC-----------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----
Confidence 10 0 011123356777777544422 34444444322111112234556778889998874311
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 141 --------~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~ 212 (254)
T PRK14273 141 --------KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA 212 (254)
T ss_pred --------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0135888999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+|||++ +|++|++++.|++++++..|.+++++.++
T Consensus 213 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 249 (254)
T PRK14273 213 GRISDRTA-FFLNGCIEEESSTDELFFNPKNTKTEEYI 249 (254)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHHhh
Confidence 78999996 59999999999999999888888765543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=289.72 Aligned_cols=197 Identities=17% Similarity=0.226 Sum_probs=151.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (236)
T cd03219 1 LEVRGLTKRFGG---LVA---LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLP- 68 (236)
T ss_pred CeeeeeEEEECC---EEE---ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCCCC-
Confidence 478999999964 235 666999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcC---------CCcHHHHHHHHHHHHHcCCCC
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR---------SDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~---------~~~~~~~~~i~~~l~~~gl~~ 224 (350)
.....+..++|++|+...+..+ +.+++. ++...... .......+++.++++.+++.+
T Consensus 69 --~~~~~~~~i~~v~q~~~l~~~~tv~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 135 (236)
T cd03219 69 --PHEIARLGIGRTFQIPRLFPELTVLENVM-----------VAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135 (236)
T ss_pred --HHHHHhcCEEEEecccccccCCCHHHHHH-----------HHHhhccccccccccccccHHHHHHHHHHHHHHcCccc
Confidence 0111123456777765554432 444443 32211100 012344567888999999987
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 279 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIi 279 (350)
..++++.+||||||||++||||| ||||++||. ++|||+
T Consensus 136 -----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 198 (236)
T cd03219 136 -----------------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL 198 (236)
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 45889999999999999999999 999999874 789999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+|| +.+..+||+++ +|++|++++.|++++++..+
T Consensus 199 vsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 199 VEHDMDVVMSLADRVT-VLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred EecCHHHHHHhCCEEE-EEeCCEEEeecCHHHhccCC
Confidence 999 57778999996 59999999999998886644
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=300.44 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=157.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++||+++|++ ..+ |+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~i~i~~l~k~~~~---~~~---l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 5 VAPIDFRNVEKRYGD---KLV---VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS 73 (306)
T ss_pred CceEEEEeEEEEECC---eEE---EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence 358999999999974 346 555999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. . ...++.++|++|+...+..+ +.+++.++.. . ...+..+..+++.++++.+++.+
T Consensus 74 ~----~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-----------~-~~~~~~~~~~~~~~~l~~~~l~~------ 130 (306)
T PRK13537 74 R----A-RHARQRVGVVPQFDNLDPDFTVRENLLVFGR-----------Y-FGLSAAAARALVPPLLEFAKLEN------ 130 (306)
T ss_pred c----h-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHH-----------H-cCCCHHHHHHHHHHHHHHcCCch------
Confidence 1 0 11234678888876655433 5555543221 1 11223445667888999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++++..||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 131 -----------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 45889999999999999999999 999999874 799999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
++.++||||+ +|++|++++.|+++++...
T Consensus 200 e~~~~~d~i~-il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 200 EAERLCDRLC-VIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 7889999996 5999999999999988654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=289.44 Aligned_cols=202 Identities=16% Similarity=0.152 Sum_probs=152.7
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++|++++|+... ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA---LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccC
Confidence 588999999997431 0134 666999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .......++.++|++|+...+..+ ++.+|+.++.... ........+.+.++++.+++.+
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (233)
T cd03258 73 S-GKELRKARRRIGMIFQHFNLLSSR----------TVFENVALPLEIA-GVPKAEIEERVLELLELVGLED-------- 132 (233)
T ss_pred C-HHHHHHHHhheEEEccCcccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 0 000000123456777665544322 3344444332211 1223345567888999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
..++.+.+||||||||++||||| |||+++||. ++|||++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 133 ---------KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred ---------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+..+||+++ +|++|++++.|++++++..
T Consensus 204 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 204 VKRICDRVA-VMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHhCCEEE-EEECCEEEEecCHHHHhcC
Confidence 778999996 5999999999998887654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=301.78 Aligned_cols=206 Identities=13% Similarity=0.173 Sum_probs=157.2
Q ss_pred cEEEEEEEEEECCCce--EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~--~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+|+++||+++|+.+.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA---LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccc---eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccc
Confidence 4899999999964321 134 666999999999999999999999999999999999 999999999876531
Q ss_pred Ccc------------cc--------ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH
Q 018829 152 TYF------------LQ--------EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 211 (350)
Q Consensus 152 ~~~------------~~--------~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~ 211 (350)
... .. .....++.++|++|++. ..++..++.+|+.++.... ..+.++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~---------~~l~~~tv~e~i~~~~~~~-~~~~~~~~~ 143 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAE---------YQLFEQTIEKDIIFGPVSM-GVSKEEAKK 143 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcc---------cccccccHHHHHHhhHHHc-CCCHHHHHH
Confidence 000 00 00001223444444421 1233346777777765432 234456677
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~--------- 273 (350)
++.++++.+|+... ++++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~~~l~~~gL~~~----------------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~ 207 (305)
T PRK13651 144 RAAKYIELVGLDES----------------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI 207 (305)
T ss_pred HHHHHHHHcCCChh----------------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 88999999999732 46899999999999999999999 999999874
Q ss_pred -------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 274 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 274 -------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
|+|||+||| +.+.++||||+ +|++|++++.|++++++..+
T Consensus 208 l~~l~~~g~tiiivtHd~~~~~~~adrv~-vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 208 FDNLNKQGKTIILVTHDLDNVLEWTKRTI-FFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred HHHHHHCCCEEEEEeeCHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 899999999 56789999996 59999999999999988764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=286.68 Aligned_cols=194 Identities=19% Similarity=0.195 Sum_probs=145.9
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc-----CCCCCCCcccEEEECCEeC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~-----~~~~~~p~~G~I~i~G~~i 149 (350)
|+++||+++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGDK---HA---LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCCc---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 5789999999642 34 67799999999999999999999999999999999 8 9999999999987
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.... ......++.++|++|+.. ++..++.+|+.++............++++.++++.+|+.+
T Consensus 70 ~~~~--~~~~~~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 131 (227)
T cd03260 70 YDLD--VDVLELRRRVGMVFQKPN-----------PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD----- 131 (227)
T ss_pred hhcc--hHHHHHHhhEEEEecCch-----------hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-----
Confidence 4110 000111224555555543 3323555666554322111112234567888999999986
Q ss_pred cceeeeecchhhhhccC--CCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~--~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
..++. +.+||||||||++||||| ||||++||. .+|||++||
T Consensus 132 ------------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 199 (227)
T cd03260 132 ------------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199 (227)
T ss_pred ------------HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEecc
Confidence 33555 599999999999999999 999999874 479999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
+.+..+||+++ +|++|++++.|+++++
T Consensus 200 ~~~~~~~~d~i~-~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 200 MQQAARVADRTA-FLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhCCEEE-EEeCCEEEEecCcccC
Confidence 56778999996 5999999999987654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=289.41 Aligned_cols=202 Identities=18% Similarity=0.272 Sum_probs=153.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 68 (242)
T cd03295 1 IEFENVTKRYGGGK--KA---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIREQ-- 68 (242)
T ss_pred CEEEEEEEEeCCcc--eE---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcCcC--
Confidence 47899999997422 24 677999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC-cccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~-~~~~~~~~~ 233 (350)
.... .+..++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+ .
T Consensus 69 -~~~~-~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-------- 127 (242)
T cd03295 69 -DPVE-LRRKIGYVIQQIGLFPHM----------TVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAE-------- 127 (242)
T ss_pred -ChHH-hhcceEEEccCccccCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHH--------
Confidence 0001 122456666654433222 4445554432211 1223445567889999999974 1
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 128 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 128 --------FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA 199 (242)
T ss_pred --------HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 34888999999999999999999 999999863 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
..+||+++ +|++|++++.|+++++...+.++.
T Consensus 200 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 231 (242)
T cd03295 200 FRLADRIA-IMKNGEIVQVGTPDEILRSPANDF 231 (242)
T ss_pred HHhCCEEE-EEECCEEEEecCHHHHHcCCCChH
Confidence 88999996 599999999999988876655443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=296.19 Aligned_cols=204 Identities=13% Similarity=0.172 Sum_probs=155.7
Q ss_pred EEEEEEEEEECCCce--EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 75 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 75 l~i~~l~~~y~~~~~--~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++||+++|+.+.. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 899999999963220 134 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.........++.++|++|++.. .++..++.+|+.++.... ..+.....+++.++++.+||...
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPES---------QLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD------- 137 (286)
T ss_pred cccchHHHHHhheEEEecChHh---------ccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000000112244555554310 133346677777654322 22344566778899999999732
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 138 ---------VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 35789999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+..+|||++ +|++|++++.|++++++..
T Consensus 209 ~~~~~dri~-~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 209 VARYADEVI-VMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 778999996 5999999999999888765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=289.98 Aligned_cols=218 Identities=17% Similarity=0.211 Sum_probs=159.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.|+|+++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|++......|++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGD-F--QA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECC-e--ee---ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 478999999999964 2 34 66699999999999999999999999999999986310001479999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. . .....++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 78 ~~-~-~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 140 (253)
T PRK14242 78 PH-V-DVVELRRRVGMVFQKPNPFPK-----------SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK---- 140 (253)
T ss_pred cc-c-CHHHHhhcEEEEecCCCCCcC-----------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 00 0 001113356777776544432 344454443221111122345567888899999864210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 141 ---------~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~ 211 (253)
T PRK14242 141 ---------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA 211 (253)
T ss_pred ---------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence 135788999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.++||+++ +|++|++++.|++++++..+.+.+++.+
T Consensus 212 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14242 212 ARVSDVTA-FFYMGKLIEVGPTEQIFTRPREKQTEDY 247 (253)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHcCCCchHHHHH
Confidence 78999996 5999999999999999888777665443
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=285.55 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=142.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++|++++|+++. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH-QPA---LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRLR 71 (216)
T ss_pred CeEEEEEEEEecCCC-eeE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhcC
Confidence 589999999996432 134 677999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.......++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 130 (216)
T TIGR00960 72 -GREIPFLRRHIGMVFQDHRLLSDR----------TVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEG--------- 130 (216)
T ss_pred -hhHHHHHHHhceEEecCccccccc----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000000122456666664433221 4455555443211 1122345667889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 131 --------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 131 --------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeE
Q 018829 287 SLTDRARIRTYLGEL 301 (350)
Q Consensus 287 ~~aDri~v~l~~G~i 301 (350)
.+||+++ +|++|++
T Consensus 203 ~~~d~i~-~l~~G~i 216 (216)
T TIGR00960 203 TYRHRTL-TLSRGRL 216 (216)
T ss_pred HhCCEEE-EEeCCcC
Confidence 8999996 5999874
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=293.38 Aligned_cols=213 Identities=12% Similarity=0.101 Sum_probs=157.3
Q ss_pred cEEEEEEEEEECCC------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 74 LTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 74 ~l~i~~l~~~y~~~------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+|+++||++.|+.+ ....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV---LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE---eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 68999999999631 01345 566999999999999999999999999999999999 99999999999
Q ss_pred eCCCCccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 148 VGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 148 ~i~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
++.... .......++.++|++|+.. ....+ ++.+|+.++............++++.++++.+++...
T Consensus 74 ~i~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 142 (265)
T TIGR02769 74 DLYQLD-RKQRRAFRRDVQLVFQDSPSAVNPRM----------TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE 142 (265)
T ss_pred EccccC-HHHHHHHhhceEEEecChhhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh
Confidence 875110 0010111235677777642 11111 3333433322211112223455678889999999632
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIi 279 (350)
.+++++.+||||||||++||||| ||||++||. ++|||+
T Consensus 143 ----------------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 143 ----------------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred ----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 45889999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+|| +.+..+||+++ +|++|++++.|++++++. +.+++++.+.
T Consensus 207 vsH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 250 (265)
T TIGR02769 207 ITHDLRLVQSFCQRVA-VMDKGQIVEECDVAQLLS-FKHPAGRNLQ 250 (265)
T ss_pred EeCCHHHHHHHhcEEE-EEeCCEEEEECCHHHHcC-CCCHHHHHHH
Confidence 999 56778999996 599999999999999877 4666665443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=293.97 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=155.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 5 ANLVDMRGVSFTRGN-R--CI---FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA 73 (269)
T ss_pred cceEEEeCeEEEECC-E--EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 468999999999964 2 34 677999999999999999999999999999999999 999999999988752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .......++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+++.+
T Consensus 74 ~~-~~~~~~~~~~i~~v~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------- 135 (269)
T PRK11831 74 MS-RSRLYTVRKRMSMLFQSGALFTDM----------NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG------- 135 (269)
T ss_pred cC-hhhHHHHhhcEEEEecccccCCCC----------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-------
Confidence 11 000001123466777765544332 333444332211111122344566788899999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 136 ----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 136 ----------AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 45889999999999999999999 999999873 689999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.+.++||+++ +|++|++++.|++++++..+
T Consensus 206 ~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 206 EVLSIADHAY-IVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHhhCEEE-EEECCEEEEeCCHHHHhcCC
Confidence 7788999996 59999999999999987754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=299.52 Aligned_cols=196 Identities=12% Similarity=0.154 Sum_probs=157.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
..++++||+++|+.+ ..+ |++|||+|++|+++||+||||||||||+|+|+|+.. |++|+|.++|.+...
T Consensus 3 ~~i~~~~l~k~~~~~--~~~---l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~- 71 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTA---LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVK- 71 (293)
T ss_pred ceeeecceEEEeCCC--CEE---EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCcc-
Confidence 457899999999832 345 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
...-.+++++|++++...+..+ +.|++.++.. .... +....++++.++++.++|.+
T Consensus 72 ----~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~-----------l~~~-~~~~~~~~~~~~l~~~~L~~------- 128 (293)
T COG1131 72 ----EPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR-----------LYGL-SKEEAEERIEELLELFGLED------- 128 (293)
T ss_pred ----CHHHHHhheEEEccCCCCCccccHHHHHHHHHH-----------HhCC-ChhHHHHHHHHHHHHcCCch-------
Confidence 1111233567777777655555 5555554432 2221 12456778999999999998
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------C-ceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g-~TVIiiTH--~ 283 (350)
..++++.+||+|||||++||+|| ||||++||+ + +||+++|| +
T Consensus 129 ----------~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 129 ----------KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred ----------hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 33788999999999999999999 999999985 4 89999999 7
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
++..+||||+ +|++|+++..|+++++...
T Consensus 199 e~~~~~d~v~-il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 199 EAEELCDRVI-ILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHHhCCEEE-EEeCCEEEEeCCHHHHHHh
Confidence 8888999996 5999999999998876443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=316.25 Aligned_cols=231 Identities=15% Similarity=0.099 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEE--EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEc
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDA--KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 113 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i--~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvG 113 (350)
.|..-.+-..+++.+..+++++.+.... ..+-+++ +|++++|++++ ++ ++++||++++|+.++|||
T Consensus 280 ~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~---l~~l~~t~~~g~~talvG 354 (559)
T COG4988 280 FFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PA---LSDLNLTIKAGQLTALVG 354 (559)
T ss_pred HHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC--cc---cCCceeEecCCcEEEEEC
Confidence 3555555566677899999888663222 2233444 59999998765 34 666999999999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhh
Q 018829 114 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 193 (350)
Q Consensus 114 pnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~ 193 (350)
+||||||||+++|+|+++ |++|+|.+||.++. .....+++....+|.|++.++..++.+|
T Consensus 355 ~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~l~---------------~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLA-----PTQGEIRVNGIDLR---------------DLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred CCCCCHHHHHHHHhCcCC-----CCCceEEECCcccc---------------ccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 999999999999999999 99999999999886 2333344444555666666666677777
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------
Q 018829 194 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--------- 264 (350)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--------- 264 (350)
+.++.. ...++++.++++.+|+.+.+.. ..+.++++ .+....|||||+||+++||||
T Consensus 415 i~l~~~-------~~s~e~i~~al~~a~l~~~v~~-p~GLdt~i------ge~G~~LSgGQ~QRlaLARAll~~~~l~ll 480 (559)
T COG4988 415 ILLARP-------DASDEEIIAALDQAGLLEFVPK-PDGLDTVI------GEGGAGLSGGQAQRLALARALLSPASLLLL 480 (559)
T ss_pred hhccCC-------cCCHHHHHHHHHHhcHHHhhcC-CCcccchh------ccCCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 765433 2445778888999999876533 55566533 445668999999999999999
Q ss_pred chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 265 NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 265 DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||++||- ++|||+||| .....-+|+|+ +|++|++++.|.|+++..+
T Consensus 481 DEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~-vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 481 DEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIV-VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred cCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEE-EecCCceeccCCHHHHhhc
Confidence 999999983 899999999 45567799995 6999999999999998764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=296.06 Aligned_cols=201 Identities=15% Similarity=0.214 Sum_probs=155.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++||+++|+.....++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 47999999999964221235 666999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ... .++.++|++|++.. .++..++.+|+.++.... ..+.++..+++.++++.+|+.+
T Consensus 75 ~---~~~-~~~~i~~v~q~~~~---------~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 132 (279)
T PRK13650 75 N---VWD-IRHKIGMVFQNPDN---------QFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQD-------- 132 (279)
T ss_pred c---HHH-HHhhceEEEcChHH---------hcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHh--------
Confidence 0 001 12244555555321 112235666666554322 2334456677889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ---------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 133 ---------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 55899999999999999999999 999999873 789999999 45
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+ ..|||++ +|++|++++.|++++++..+
T Consensus 204 ~-~~~dri~-~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 204 V-ALSDRVL-VMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred H-HhCCEEE-EEECCEEEEECCHHHHHcCh
Confidence 5 5799996 59999999999999887764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=312.98 Aligned_cols=229 Identities=13% Similarity=0.166 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChH
Q 018829 46 SLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 119 (350)
Q Consensus 46 ~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGK 119 (350)
...+...++.|+.+++..+++.... ....++++||+|+|++.. .++ |+|+||++.+||.+||+|+|||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~-~~~---L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQ-TKA---LKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCc-cch---hhccceeecCCCeEEEECCCCCCH
Confidence 3334444566999999888775332 111689999999997554 356 566999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhh
Q 018829 120 SSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL 199 (350)
Q Consensus 120 STLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~ 199 (350)
|||+++|.|.++ |++|+|.++|.++. .+..++.+..++++.|...+|..++.+|+.++..
T Consensus 378 STllqLl~~~~~-----~~~G~i~~~g~~~~---------------~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~ 437 (573)
T COG4987 378 STLLQLLAGAWD-----PQQGSITLNGVEIA---------------SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437 (573)
T ss_pred HHHHHHHHhccC-----CCCCeeeECCcChh---------------hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence 999999999999 99999999999886 2344445555566777777888888888876544
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcC
Q 018829 200 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS 270 (350)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~ 270 (350)
....+.+.++++++||.+.+...+.++-. .++.-...||||||||++|||+| ||||.+
T Consensus 438 -------~AsDEel~~aL~qvgL~~l~~~~p~gl~t------~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTeg 504 (573)
T COG4987 438 -------DASDEELWAALQQVGLEKLLESAPDGLNT------WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504 (573)
T ss_pred -------CCCHHHHHHHHHHcCHHHHHHhChhhhhc------hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCccc
Confidence 23456778889999988743222222222 33455667999999999999998 999999
Q ss_pred CCC---------------CceEEEEech-HHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 271 FRD---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 271 Ld~---------------g~TVIiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
||+ |+|+|+|||+ .-.+.||||+ +|++|+++++|++.+++.
T Consensus 505 LD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi-vl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 505 LDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII-VLDNGKIIEEGTHAELLA 561 (573)
T ss_pred CChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE-EEECCeeeecCCHHhhhc
Confidence 985 9999999993 3446799995 599999999999999987
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=301.41 Aligned_cols=221 Identities=14% Similarity=0.165 Sum_probs=162.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|..+. ..+ |+++||+|++||++||+||||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~~-~~~---L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRT-KHV---LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45899999999996432 234 77799999999999999999999999999999998621111578999999999751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. . .....++.+++++|++..+.. ++.+|+.++.......+.+..++.+.++++.+++.+.+
T Consensus 154 ~~-~-~~~~lr~~i~~v~q~~~~~~~-----------ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l----- 215 (329)
T PRK14257 154 KK-I-SSLELRTRIGMVFQKPTPFEM-----------SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV----- 215 (329)
T ss_pred cc-c-chHhhhccEEEEecCCccCCC-----------cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-----
Confidence 00 0 000113356666666554433 44455554432111111223344567788888875422
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
.+..++++..||||||||++||||| ||||++||. ++|||+||| +.+
T Consensus 216 --------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i 287 (329)
T PRK14257 216 --------KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA 287 (329)
T ss_pred --------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1145789999999999999999999 999999873 799999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+||||+ +|++|++++.|++++++..|.++.+..++
T Consensus 288 ~~~~Drii-vl~~G~i~e~g~~~~l~~~~~~~~~~~~~ 324 (329)
T PRK14257 288 QRISDETV-FFYQGWIEEAGETKTIFIHPKNKRTKDYI 324 (329)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHHHh
Confidence 78899996 59999999999999999999887665544
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=294.35 Aligned_cols=200 Identities=15% Similarity=0.245 Sum_probs=154.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+++++|++++|+.+.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (277)
T PRK13652 2 HLIETRDLCYSYSGSKE--A---LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITKE 71 (277)
T ss_pred ceEEEEEEEEEeCCCCc--e---eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 57999999999964332 4 777999999999999999999999999999999999 9999999999987510
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.. ...+..+++++|+.... ++..++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 72 ---~~-~~~~~~i~~v~q~~~~~---------~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (277)
T PRK13652 72 ---NI-REVRKFVGLVFQNPDDQ---------IFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEE-------- 129 (277)
T ss_pred ---CH-HHHHhheEEEecCcccc---------cccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 00 01122456666664211 11224445554433211 2233445567889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 130 ---------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 130 ---------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45889999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+.++|||++ +|++|++++.|++++++..+
T Consensus 201 ~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 201 VPEMADYIY-VMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHhCCEEE-EEECCeEEEECCHHHHhcCH
Confidence 778999996 59999999999999887643
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=314.96 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=165.1
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
..|+++||+|+|+++.++ |+++||+|++||.+||+|+|||||||++|+|.++++ .+|+|.+||++++
T Consensus 350 ~~I~F~dV~f~y~~k~~i-----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik-- 416 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKV-----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIK-- 416 (591)
T ss_pred CcEEEEeeEEEeCCCCce-----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHh--
Confidence 359999999999876544 666999999999999999999999999999999998 6899999999997
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.+.....|..+++|+|+..+|..++..||.+|.. ....+++.++++.+++.+-+.+..++
T Consensus 417 -------------~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-------sas~eeV~e~~k~a~~hd~i~~l~~G 476 (591)
T KOG0057|consen 417 -------------EVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-------SASDEEVVEACKRAGLHDVISRLPDG 476 (591)
T ss_pred -------------hhChHHhhhheeEeCCcccccchhHHHHhhcCCC-------CcCHHHHHHHHHHcCcHHHHHhcccc
Confidence 2334444555555666666677788888887765 23456788889999998866665666
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~~ 287 (350)
+-..|++. ...||||||||++||||+ |||||+||. ++|+|+|.| -+...
T Consensus 477 Y~T~VGer------G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 477 YQTLVGER------GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred chhhHhhc------ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh
Confidence 66644444 457999999999999998 999999983 899999999 46777
Q ss_pred cccEEEEEecCCeEeecCCcccccc
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.||+|+ ++++|++.+.|+|++++.
T Consensus 551 ~~DkI~-~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 551 DFDKII-VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCCEEE-EEECCeeEEeccHHHHhh
Confidence 899996 599999999999999988
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=289.75 Aligned_cols=210 Identities=14% Similarity=0.165 Sum_probs=158.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc-
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY- 153 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~- 153 (350)
|+++||++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGI-L--TV---LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCC-e--eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 478999999974 2 34 677999999999999999999999999999999999 99999999998874110
Q ss_pred ----c-c---cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 154 ----F-L---QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 154 ----~-~---~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
. + ......++.+++++|+...+... ++.+|+.++.............+.+.++++.+|+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~- 138 (252)
T TIGR03005 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK----------TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD- 138 (252)
T ss_pred ccccccccchhHHHHHhhCeEEEecCcccCCCC----------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-
Confidence 0 0 00001123456666665443322 344444433211111223345567888999999987
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIi 279 (350)
..++.+.+||||||||++||||| |||+++||. +.|+|+
T Consensus 139 ----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 202 (252)
T TIGR03005 139 ----------------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL 202 (252)
T ss_pred ----------------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 45889999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+|| +.+..+||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 203 vsH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T TIGR03005 203 VTHEMGFAREFADRVC-FFDKGRIVEQGKPDEIFRQPKEERTREFL 247 (252)
T ss_pred EeCCHHHHHHhcCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 999 56778999996 59999999999999998888777665543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=294.13 Aligned_cols=202 Identities=13% Similarity=0.215 Sum_probs=156.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|+.+. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~ 72 (283)
T PRK13636 3 DYILKVEELNYNYSDGT--HA---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDY 72 (283)
T ss_pred CceEEEEeEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 35899999999996333 34 777999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. . .....+..++|++|+... .++..++.+|+.++.... ..+.....+++.++++.+|+.+
T Consensus 73 ~~-~-~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 133 (283)
T PRK13636 73 SR-K-GLMKLRESVGMVFQDPDN---------QLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH------- 133 (283)
T ss_pred Cc-c-hHHHHHhhEEEEecCcch---------hhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 00 0 000112345666665421 112235566665543321 2233455567889999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+.++.+.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 134 ----------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 134 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred ----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 56899999999999999999999 999999873 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+..+|||++ +|++|++++.|++++++..
T Consensus 204 ~~~~~~dri~-~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 204 IVPLYCDNVF-VMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHhcC
Confidence 6778999996 5999999999999888764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=290.16 Aligned_cols=220 Identities=15% Similarity=0.215 Sum_probs=160.6
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....+++|+|.++|+++.
T Consensus 9 ~~~~l~i~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ-H--HA---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CCceEEEeeEEEEECC-e--ee---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 3468999999999974 2 34 6779999999999999999999999999999999861000126899999999874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
... . .....++.++|++|+...+...+. +|+.++..........+..+++.++++.+++.+.+.
T Consensus 83 ~~~-~-~~~~~~~~i~~v~q~~~~~~~tv~-----------enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 146 (259)
T PRK14274 83 KGK-V-DLVELRKNIGMVFQKGNPFPQSIF-----------DNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK--- 146 (259)
T ss_pred ccc-c-CHHHHhhceEEEecCCcccccCHH-----------HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh---
Confidence 100 0 001113356777776544433344 444433221111122344566778899999864210
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
+.+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 147 ----------~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 216 (259)
T PRK14274 147 ----------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ 216 (259)
T ss_pred ----------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 135788999999999999999999 999999874 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+.++|||++ +|++|++++.|++++++..+.++++..++
T Consensus 217 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (259)
T PRK14274 217 AARVSDQTA-FFYMGELVECNDTNKMFSNPDDQRTLDYI 254 (259)
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHhhCCCCHHHHHhh
Confidence 778999996 59999999999999998887776655443
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=283.67 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=148.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~---~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 67 (220)
T cd03265 1 IEVENLVKKYGD---FEA---VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVRE-- 67 (220)
T ss_pred CEEEEEEEEECC---EEe---eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCcC--
Confidence 579999999964 235 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
... .++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 68 --~~~-~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 123 (220)
T cd03265 68 --PRE-VRRRIGIVFQDLSVDDEL----------TGWENLYIHARLY-GVPGAERRERIDELLDFVGLLE---------- 123 (220)
T ss_pred --hHH-HhhcEEEecCCccccccC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 001 123456777765443322 3444444332211 1223345667889999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 124 -------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 124 -------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred -------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5777
Q ss_pred hcccEEEEEecCCeEeecCCcccc
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
.+||+++ +|++|++++.|+++++
T Consensus 197 ~~~d~i~-~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 197 QLCDRVA-IIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhCCEEE-EEeCCEEEEeCChHHc
Confidence 8999996 5999999998877653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=283.80 Aligned_cols=193 Identities=14% Similarity=0.144 Sum_probs=147.9
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++||++.|+.+. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~-~~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 69 (220)
T cd03263 1 LQIRNLTKTYKKGT-KPA---VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRTD-- 69 (220)
T ss_pred CEEEeeEEEeCCCC-cee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccc--
Confidence 57899999996431 134 666999999999999999999999999999999999 9999999999987510
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
. ...++.++|++|+...+... ++.+|+.+..... ..+.....+++.++++.+++.+
T Consensus 70 --~-~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 125 (220)
T cd03263 70 --R-KAARQSLGYCPQFDALFDEL----------TVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTD---------- 125 (220)
T ss_pred --h-HHHhhhEEEecCcCCccccC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 0 11123456777665443222 3344444332211 1122344567888999999976
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHhc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~~ 288 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.++
T Consensus 126 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 126 -------KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred -------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 45888999999999999999999 999999874 689999999 567789
Q ss_pred ccEEEEEecCCeEeecCCcccc
Q 018829 289 TDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 289 aDri~v~l~~G~iv~~g~~~~l 310 (350)
||+++ +|++|++++.|+++++
T Consensus 199 ~d~i~-~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 199 CDRIA-IMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCEEE-EEECCEEEecCCHHHc
Confidence 99996 5999999999988654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=290.00 Aligned_cols=219 Identities=19% Similarity=0.227 Sum_probs=160.6
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++|+++.|++ . .+ |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 9 ~~~~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 9 AQPQIKVENLNLWYGE-K--QA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred cceeEEEeeeEEEeCC-e--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 3568999999999964 2 34 6779999999999999999999999999999999971100027999999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.. .. .....++.++|++|+...+. .++.+|+.++.... ..+....++++.++++.+++....
T Consensus 83 ~~-~~-~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~---- 144 (258)
T PRK14268 83 EP-DV-DVVELRKNVGMVFQKPNPFP-----------MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDET---- 144 (258)
T ss_pred cc-cc-hHHHHhhhEEEEecCCccCc-----------ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcch----
Confidence 10 00 00111234667777654433 23344444332211 112234455678889999885311
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
...+++.+..|||||+||++||||| ||||++||. ++|||++|| +.
T Consensus 145 ---------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~ 215 (258)
T PRK14268 145 ---------SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ 215 (258)
T ss_pred ---------hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 0135788999999999999999999 999999874 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+.++||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 216 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK14268 216 AARISDYTG-FFLMGELIEFGQTRQIFHNPREKSTEDYI 253 (258)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCCCCHHHHHHh
Confidence 778999996 59999999999999999888777765544
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=300.65 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=158.4
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++|+++||+++|++ ..+ |+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 38 ~~~~i~i~nl~k~y~~---~~~---l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~ 106 (340)
T PRK13536 38 STVAIDLAGVSKSYGD---KAV---VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVP 106 (340)
T ss_pred CceeEEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECC
Confidence 3457999999999974 345 666999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.. ....++.++|++|+...+..+ +.+++.++... . ..+.....+++.++++.+++.+
T Consensus 107 ~~-----~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-----------~-~~~~~~~~~~~~~ll~~~~L~~----- 164 (340)
T PRK13536 107 AR-----ARLARARIGVVPQFDNLDLEFTVRENLLVFGRY-----------F-GMSTREIEAVIPSLLEFARLES----- 164 (340)
T ss_pred cc-----hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 11 111234678888876655443 55555432211 1 1223345566788899999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||+ |+|||++||
T Consensus 165 ------------~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l 232 (340)
T PRK13536 165 ------------KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 232 (340)
T ss_pred ------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 45889999999999999999999 999999874 899999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+++.++||+|+ +|++|+++..|+++++...
T Consensus 233 ~e~~~~~d~i~-il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 233 EEAERLCDRLC-VLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhh
Confidence 67889999996 5999999999999988654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=287.56 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=156.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 2 NKIEIRDLKVSFGQ-V--EV---LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred ceEEEEeeEEEECC-e--ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 47999999999974 2 34 666999999999999999999999999999999997100013699999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC-CCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. ... .++.++|++|+...+... ++.+|+.++...... ....+..+.+.++++.+++.+.+.
T Consensus 76 ~---~~~-~~~~i~~v~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 137 (250)
T PRK14247 76 D---VIE-LRRRVQMVFQIPNPIPNL----------SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---- 137 (250)
T ss_pred C---HHH-HhccEEEEeccCccCCCC----------cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh----
Confidence 0 011 123566777765433222 444555443221111 122445567888999999864210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
..+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.+
T Consensus 138 ---------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 208 (250)
T PRK14247 138 ---------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQA 208 (250)
T ss_pred ---------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 035788999999999999999999 999999874 789999999 566
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 320 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 320 (350)
..+||+++ +|++|++++.|++++++..+.++.++
T Consensus 209 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 242 (250)
T PRK14247 209 ARISDYVA-FLYKGQIVEWGPTREVFTNPRHELTE 242 (250)
T ss_pred HHhcCEEE-EEECCeEEEECCHHHHHcCCccHHHH
Confidence 78999996 59999999999999998766544433
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=287.37 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=147.9
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++||+++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 69 (241)
T cd03256 1 IEVENLSKTYPNGK--KA---LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLK- 69 (241)
T ss_pred CEEeeEEEecCCcc--EE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccccC-
Confidence 47899999996423 34 667999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh-------hcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-------IRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~-------~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
.......++.++|++|+...+... ++.+|+.++... ..........+++.++++.+++.+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 136 (241)
T cd03256 70 GKALRQLRRQIGMIFQQFNLIERL----------SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD--- 136 (241)
T ss_pred HhHHHHHHhccEEEcccCcccccC----------cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh---
Confidence 000001123456777665444322 333444332110 001112334567888999999986
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiT 281 (350)
..++.+.+||||||||++||||| ||||++||. |+|||++|
T Consensus 137 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 202 (241)
T cd03256 137 --------------KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL 202 (241)
T ss_pred --------------hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45889999999999999999999 999999873 78999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
| +.+..+||+++ +|++|++++.|+++++
T Consensus 203 H~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 203 HQVDLAREYADRIV-GLKDGRIVFDGPPAEL 232 (241)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEeecCHHHh
Confidence 9 57778999996 5999999999988775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=288.36 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=148.8
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++||+++|+.+. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~--~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGK--QA---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITKLR 70 (243)
T ss_pred CeEEEeeeeecCCCc--ce---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhhCC
Confidence 578999999996222 34 666999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh-------cCCCcHHHHHHHHHHHHHcCCCCcc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEPSV 226 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~-------~~~~~~~~~~~i~~~l~~~gl~~~~ 226 (350)
.......++.++|++|+...+..+ ++.+|+.++.... ........++++.++++.+++..
T Consensus 71 -~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 137 (243)
T TIGR02315 71 -GKKLRKLRRRIGMIFQHYNLIERL----------TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-- 137 (243)
T ss_pred -HHHHHHHHhheEEEcCCCcccccc----------cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh--
Confidence 000000122456666654433221 4445554432110 00112344567888999999986
Q ss_pred ccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEE
Q 018829 227 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 280 (350)
Q Consensus 227 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIii 280 (350)
..++.+.+||||||||++||||| ||||++||. ++|||++
T Consensus 138 ---------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 202 (243)
T TIGR02315 138 ---------------KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN 202 (243)
T ss_pred ---------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 45889999999999999999999 999999873 6899999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
|| +.+.++||+++ +|++|++++.|+++++
T Consensus 203 tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 203 LHQVDLAKKYADRIV-GLKAGEIVFDGAPSEL 233 (243)
T ss_pred eCCHHHHHHhcCeEE-EEECCEEEecCCHHHh
Confidence 99 56778999996 5999999999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=323.17 Aligned_cols=231 Identities=13% Similarity=0.171 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHHHHHccchhccc--C------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRT--R------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~--~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
|......+.+..++.++++.+++... . ..+.++++||+|+|+++.++ |+|+||++++|++++|+|+|
T Consensus 296 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~inl~i~~G~~v~IvG~s 370 (588)
T PRK13657 296 INQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-----VEDVSFEAKPGQTVAIVGPT 370 (588)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCce-----ecceeEEECCCCEEEEECCC
Confidence 44455556667788888876543211 1 12359999999999743334 77799999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|.++. .+...+.+...++++|++.++..++.+|+.
T Consensus 371 GsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~ 430 (588)
T PRK13657 371 GAGKSTLINLLQRVFD-----PQSGRILIDGTDIR---------------TVTRASLRRNIAVVFQDAGLFNRSIEDNIR 430 (588)
T ss_pred CCCHHHHHHHHhcCcC-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEEecCcccccccHHHHHh
Confidence 9999999999999999 99999999999986 122233334445555555666667777776
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ...++++.++++.+++.+.+....++... ........||||||||++||||| ||
T Consensus 431 ~~~~-------~~~d~~i~~al~~~~l~~~i~~lp~gldt------~i~~~g~~LSgGq~QRialARall~~~~iliLDE 497 (588)
T PRK13657 431 VGRP-------DATDEEMRAAAERAQAHDFIERKPDGYDT------VVGERGRQLSGGERQRLAIARALLKDPPILILDE 497 (588)
T ss_pred cCCC-------CCCHHHHHHHHHHhCHHHHHHhCcccccc------hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5421 11234566667777766543333333333 23445667999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||+ ++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 498 pts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii-~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 498 ATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRIL-VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEE-EEECCEEEEeCCHHHHHHC
Confidence 9999874 799999999 45567899995 5999999999999998754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=308.62 Aligned_cols=199 Identities=14% Similarity=0.126 Sum_probs=156.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~L~~~nls~~y~~---~~v---L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~~ 70 (402)
T PRK09536 2 PMIDVSDLSVEFGD---TTV---LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEAL 70 (402)
T ss_pred ceEEEeeEEEEECC---EEE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCcC
Confidence 57999999999974 244 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--c-CCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--R-RSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~-~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
..... ++.+++++|+...+..+ ++.+|+.++.... . .......++++.++++.+++.+
T Consensus 71 ---~~~~~-~~~ig~v~q~~~l~~~~----------tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~----- 131 (402)
T PRK09536 71 ---SARAA-SRRVASVPQDTSLSFEF----------DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ----- 131 (402)
T ss_pred ---CHHHH-hcceEEEccCCCCCCCC----------CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----
Confidence 11111 23567787776554333 3334443332110 0 1112445677899999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-- 282 (350)
+.++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 132 ------------~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl 199 (402)
T PRK09536 132 ------------FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL 199 (402)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 56899999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+++.++|||++ +|++|+++..|++++++..+
T Consensus 200 ~~~~~~adrii-~l~~G~iv~~G~~~ev~~~~ 230 (402)
T PRK09536 200 DLAARYCDELV-LLADGRVRAAGPPADVLTAD 230 (402)
T ss_pred HHHHHhCCEEE-EEECCEEEEecCHHHHhCcH
Confidence 67889999996 59999999999999887643
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=288.71 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=157.1
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe---
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 148 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~--- 148 (350)
.++|+++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 4 QPLLSVRGLTKLYGP-R--KG---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQL 72 (258)
T ss_pred CceEEEeeeEEEcCC-c--ee---eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCccccc
Confidence 357999999999964 2 34 677999999999999999999999999999999999 999999999987
Q ss_pred --CCCCccccccccCCCccceeeccccc--cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 149 --GDGTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 149 --i~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
+............++.++|++|+... +... ++.+|+.+.............++++.++++.+++.+
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV----------SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA 142 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccc----------cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh
Confidence 43100000001123356777777531 1111 222333322111111112244567788999999963
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
. .+++.+.+||||||||++||||| ||||++||. |.|||
T Consensus 143 ~----------------~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 143 A----------------RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred h----------------HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 1 35889999999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++|| ..+..+||+++ +|++|++++.|++++++..+.+++.+.++
T Consensus 207 ~isH~~~~~~~~~d~i~-~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 252 (258)
T PRK11701 207 IVTHDLAVARLLAHRLL-VMKQGRVVESGLTDQVLDDPQHPYTQLLV 252 (258)
T ss_pred EEeCCHHHHHHhcCEEE-EEECCEEEEeCCHHHHhcCCCCHHHHHHH
Confidence 9999 56777999996 59999999999999998877665554443
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=297.35 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=153.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~i~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~- 70 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVV---VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPS- 70 (303)
T ss_pred cEEEEEeEEEEeCC---eEE---EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc-
Confidence 47999999999974 245 666999999999999999999999999999999999 999999999998741
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.....++.++|++|+...+..+ +.+++.++. ... ..+....++++.++++.+++.+
T Consensus 71 ----~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-----------~~~-~~~~~~~~~~~~~ll~~~~l~~------- 127 (303)
T TIGR01288 71 ----RARLARVAIGVVPQFDNLDPEFTVRENLLVFG-----------RYF-GMSTREIEAVIPSLLEFARLES------- 127 (303)
T ss_pred ----cHHHHhhcEEEEeccccCCcCCcHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 1111234567777776544333 444443211 111 1223344566778899999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 128 ----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 128 ----------KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45889999999999999999999 999999874 789999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+..+||+++ +|++|+++..|+++++...
T Consensus 198 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 198 AERLCDRLC-VLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhh
Confidence 778999996 5999999999999888654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=291.70 Aligned_cols=201 Identities=15% Similarity=0.222 Sum_probs=154.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|+... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 69 (275)
T PRK13639 1 ILETRDLKYSYPDGT--EA---LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYD- 69 (275)
T ss_pred CEEEEEEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccc-
Confidence 588999999996333 24 777999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.......++.++|++|+... .++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 -~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--------- 129 (275)
T PRK13639 70 -KKSLLEVRKTVGIVFQNPDD---------QLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEG--------- 129 (275)
T ss_pred -cchHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch---------
Confidence 00000112345666666421 112224555555443221 1223445567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
+.++++.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 130 --------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 56889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.+||+++ +|++|++++.|++++++..+
T Consensus 202 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 202 VYADKVY-VMSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHhcCh
Confidence 8999996 59999999999999887654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=320.98 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|......+....|+.++++.+++.... ....++++||+|+|++... ++ |+|+||+|++||+++|+|+||
T Consensus 293 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~inl~i~~G~~v~IvG~sG 368 (571)
T TIGR02203 293 VNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR-PA---LDSISLVIEPGETVALVGRSG 368 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCC-cc---ccCeeEEecCCCEEEEECCCC
Confidence 3566667777788999999876543211 1235999999999965321 34 666999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+++|+|+++ |++|+|.++|.++. .+...+.+...++++|++.++..++.+|+.+
T Consensus 369 sGKSTLl~lL~gl~~-----~~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~ 428 (571)
T TIGR02203 369 SGKSTLVNLIPRFYE-----PDSGQILLDGHDLA---------------DYTLASLRRQVALVSQDVVLFNDTIANNIAY 428 (571)
T ss_pred CCHHHHHHHHHhccC-----CCCCeEEECCEeHH---------------hcCHHHHHhhceEEccCcccccccHHHHHhc
Confidence 999999999999999 99999999999876 1222233344455556666666667777765
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. ++..++++.++++.+|+.+.+.+..++.+..|++ ....||||||||++||||+ |||
T Consensus 429 ~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~------~g~~LSgGqrQRiaLARall~~~~illLDEp 496 (571)
T TIGR02203 429 GRT------EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE------NGVLLSGGQRQRLAIARALLKDAPILILDEA 496 (571)
T ss_pred CCC------CCCCHHHHHHHHHHcChHHHHHhCcCcccceecC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 421 1223456777888888876544434444443333 3457999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|++||. ++|+|+||| ....+.||+|+ +|++|++++.|+++++++.
T Consensus 497 ts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii-~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 497 TSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIV-VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEE-EEeCCEEEeeCCHHHHHHc
Confidence 999984 799999999 46667899995 5999999999999999764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=280.71 Aligned_cols=200 Identities=14% Similarity=0.186 Sum_probs=162.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|+++++++++|++ .+.|+.| |||++++||++||+|||||||||++|+|++++. |++|.|.++|.|...
T Consensus 1 Ml~v~~l~K~y~~--~v~Avrd---VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~~-- 68 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRD---VSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTVR-- 68 (245)
T ss_pred CeeeeehhhhccC--HHhhhhh---eeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeeccccc--
Confidence 6899999999976 3457555 999999999999999999999999999999999 999999999988751
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.....++++++.+.....+..+ +.||+.+|.. .. ...+.+.++++.++.+.++|.+
T Consensus 69 ---~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~-----------L~-~l~~~~~kari~~l~k~l~l~~-------- 125 (245)
T COG4555 69 ---DPSFVRRKIGVLFGERGLYARLTARENLKYFAR-----------LN-GLSRKEIKARIAELSKRLQLLE-------- 125 (245)
T ss_pred ---ChHHHhhhcceecCCcChhhhhhHHHHHHHHHH-----------Hh-hhhhhHHHHHHHHHHHHhChHH--------
Confidence 1222355677777443333333 4555544432 11 2345778899999999999998
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC----------------CCceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld----------------~g~TVIiiTH--~~~ 285 (350)
.++++..+||-||||||+||||| |||+++|| +|++||++|| .++
T Consensus 126 ---------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 126 ---------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred ---------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 67999999999999999999999 99999976 2999999999 688
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
..+|||++ ++++|+++..|+.+++........
T Consensus 197 ealCDrvi-vlh~Gevv~~gs~~~l~~r~~~~~ 228 (245)
T COG4555 197 EALCDRVI-VLHKGEVVLEGSIEALDARTVLRN 228 (245)
T ss_pred HHhhheEE-EEecCcEEEcCCHHHHHHHHhhcC
Confidence 89999996 599999999999998876544444
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=278.33 Aligned_cols=185 Identities=18% Similarity=0.246 Sum_probs=143.5
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 66 (213)
T cd03259 1 LELKGLSKTYGS-V--RA---LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG--- 66 (213)
T ss_pred CeeeeeEEEeCC-e--ee---ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc---
Confidence 478999999964 2 35 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (213)
T cd03259 67 ---VPPERRNIGMVFQDYALFPHL----------TVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEG---------- 122 (213)
T ss_pred ---CchhhccEEEEcCchhhccCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 111123456666654433222 4445554432211 1122345567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 123 -------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 123 -------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL 195 (213)
T ss_pred -------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecC
Q 018829 287 SLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g 305 (350)
.+||+++ +|++|++++.|
T Consensus 196 ~~~d~v~-~l~~G~i~~~g 213 (213)
T cd03259 196 ALADRIA-VMNEGRIVQVG 213 (213)
T ss_pred HhcCEEE-EEECCEEEecC
Confidence 8999996 59999998764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=289.76 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=158.0
Q ss_pred CCcEEEEEEEEEECCC------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC
Q 018829 72 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
+++|+++||+++|+.. ...++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA---VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce---eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEEC
Confidence 3689999999999521 01234 666999999999999999999999999999999999 999999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 146 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 146 G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
|.++... .....++.++|++|+...+ +.+ .++.+++.++.............+.+.++++.+++.+
T Consensus 74 g~~~~~~----~~~~~~~~i~~v~q~~~~~---------~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 140 (267)
T PRK15112 74 DHPLHFG----DYSYRSQRIRMIFQDPSTS---------LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP 140 (267)
T ss_pred CEECCCC----chhhHhccEEEEecCchhh---------cCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh
Confidence 9987511 0111123466777764311 111 1333343332221111122345567888999999953
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
. ..++++.+||||||||++||||| ||||++||. |.|||
T Consensus 141 ~----------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 141 D----------------HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred H----------------HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 2 34778899999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++|| +.+..+||+++ +|++|++++.|++++++..+..+..+.++
T Consensus 205 ivsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 205 YVTQHLGMMKHISDQVL-VMHQGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred EEeCCHHHHHHhcCEEE-EEECCEEEecCCHHHHhcCCCCHHHHHHH
Confidence 9999 57778899996 59999999999999998877665544443
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=282.19 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=146.2
Q ss_pred cEEEEEEEEEECCCce-EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~-~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++++|++++|+.... .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA---VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVK- 71 (218)
T ss_pred CeEEEEEEEecCCCCcccee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEccc-
Confidence 5789999999975311 134 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .. .++.+++++|+...+... +.+|+. +..... .....+..+++.++++.+|+.+
T Consensus 72 -~~--~~-~~~~i~~~~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (218)
T cd03266 72 -EP--AE-ARRRLGFVSDSTGLYDRLTARENLE-----------YFAGLY-GLKGDELTARLEELADRLGMEE------- 128 (218)
T ss_pred -CH--HH-HHhhEEEecCCcccCcCCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCHH-------
Confidence 00 11 133567777776544432 444443 322111 1223445677888999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 129 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 129 ----------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred ----------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 55889999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecC
Q 018829 285 LLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g 305 (350)
+..+||+++ +|++|++++.|
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~~ 218 (218)
T cd03266 199 VERLCDRVV-VLHRGRVVYEG 218 (218)
T ss_pred HHHhcCEEE-EEECCEEeecC
Confidence 778999996 59999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=303.32 Aligned_cols=195 Identities=16% Similarity=0.168 Sum_probs=151.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe----CCCCccccccccCCCccceeecc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYD 171 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~----i~~~~~~~~~~~~~~~~~~~~~d 171 (350)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++ +......+....+++.++|++|+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 666999999999999999999999999999999999 999999999973 32100001111222355666666
Q ss_pred ccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCC
Q 018829 172 TRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 251 (350)
Q Consensus 172 ~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 251 (350)
...+..+ ++.+|+.++.... ..+..+.++++.++++.+||.+ ..++++.+||
T Consensus 115 ~~l~p~~----------Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~-----------------~~~~~~~~LS 166 (382)
T TIGR03415 115 FALMPWL----------TVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQ-----------------WADKKPGELS 166 (382)
T ss_pred CcCCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-----------------hhcCChhhCC
Confidence 5444322 5555665554321 2234556678899999999987 4589999999
Q ss_pred HHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeEee
Q 018829 252 VEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLG 303 (350)
Q Consensus 252 GGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~ 303 (350)
||||||++||||| |||+++||+ ++|||+||| +++.++||||+ +|++|++++
T Consensus 167 gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~-vl~~G~iv~ 245 (382)
T TIGR03415 167 GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIA-IMEGGRIIQ 245 (382)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEE
Confidence 9999999999999 999999874 789999999 67889999996 599999999
Q ss_pred cCCccccccCCCCCChHHHHH
Q 018829 304 IPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 304 ~g~~~~l~~~~~~~~~~~~~~ 324 (350)
.|++++++..|...+++.++.
T Consensus 246 ~g~~~ei~~~p~~~~~~~~~~ 266 (382)
T TIGR03415 246 HGTPEEIVLNPANDYVADFVA 266 (382)
T ss_pred ecCHHHHhhCcchHHHHHHhc
Confidence 999999998887777766654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=285.87 Aligned_cols=213 Identities=19% Similarity=0.252 Sum_probs=158.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc---cCCCCCCC--cccEEEECCE
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 147 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl---~~~~~~~p--~~G~I~i~G~ 147 (350)
++++++|+++.|+. .++ |+++||+|++||+++|+||||||||||+++|+|+ ++ | ++|+|.++|.
T Consensus 2 ~~l~~~~~~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHA---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECC---EeE---EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 58999999999975 234 6679999999999999999999999999999997 34 4 5899999999
Q ss_pred eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 148 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 148 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
++.... . .....++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 71 ~~~~~~-~-~~~~~~~~i~~v~q~~~~~~~-----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 137 (250)
T PRK14245 71 NIYDKG-V-QVDELRKNVGMVFQRPNPFPK-----------SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK 137 (250)
T ss_pred eccccc-c-cHHHHhhheEEEecCCccCcc-----------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh
Confidence 875110 0 001113356777776543322 344444443221111112334567788899999864210
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
+.+++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 138 -------------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 138 -------------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred -------------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 135788999999999999999999 999999874 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+..+|||++ +|++|++++.|++++++..+.+++++.++
T Consensus 205 ~~~~~~~~d~v~-~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14245 205 MQQAARVSDKTA-FFYMGEMVEYDDTKKIFTNPEKEATQNYI 245 (250)
T ss_pred HHHHHhhCCEEE-EEECCEEEEECCHHHHhcCCCChHHHHhh
Confidence 56778999996 59999999999999999888777655443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=322.70 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=167.7
Q ss_pred CCcEEEEEEEEEECCC--------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE
Q 018829 72 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 143 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~--------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~ 143 (350)
.++|+++||++.|+.. ....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEE
Confidence 4689999999999621 01245 566999999999999999999999999999999999 9999999
Q ss_pred ECCEeCCCCccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 018829 144 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 221 (350)
Q Consensus 144 i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g 221 (350)
++|+++..... ......++.++|++|+.. .+..+ ++.+|+.++...+.........+++.++++.+|
T Consensus 383 ~~g~~i~~~~~-~~~~~~~~~i~~v~Q~~~~~l~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~g 451 (623)
T PRK10261 383 FNGQRIDTLSP-GKLQALRRDIQFIFQDPYASLDPRQ----------TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451 (623)
T ss_pred ECCEECCcCCH-HHHHHhcCCeEEEecCchhhcCCCC----------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 99998752110 000111335677777652 22222 344444443322111123345577889999999
Q ss_pred CCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------Cc
Q 018829 222 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 275 (350)
Q Consensus 222 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~ 275 (350)
+... .+++++++||||||||++||||| ||||++||. |.
T Consensus 452 L~~~----------------~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~ 515 (623)
T PRK10261 452 LLPE----------------HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515 (623)
T ss_pred CCHH----------------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 9632 45899999999999999999999 999999873 78
Q ss_pred eEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 018829 276 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 327 (350)
Q Consensus 276 TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 327 (350)
|||+||| +.+..+||||+ +|++|++++.|++++++..|.+++++.++..+.
T Consensus 516 tvi~isHdl~~v~~~~dri~-vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~ 568 (623)
T PRK10261 516 AYLFISHDMAVVERISHRVA-VMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568 (623)
T ss_pred EEEEEeCCHHHHHHhCCEEE-EEECCEEEEecCHHHHhcCCCCHHHHHHHhhCC
Confidence 9999999 57788999996 599999999999999999999999887776543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=287.31 Aligned_cols=211 Identities=16% Similarity=0.146 Sum_probs=157.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||++.|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEV---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 467999999999974 234 677999999999999999999999999999999999 999999999988741
Q ss_pred Ccc-------c--cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 018829 152 TYF-------L--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 222 (350)
Q Consensus 152 ~~~-------~--~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl 222 (350)
... . +.....++.++|++|+...+... ++.+|+.++............++++.++++.+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~----------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI 141 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCCCC----------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Confidence 000 0 00011123456666654433322 4445544322111112234456778899999999
Q ss_pred CCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceE
Q 018829 223 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 277 (350)
Q Consensus 223 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TV 277 (350)
.+. ..++++.+||||||||++||||| ||||++||. |+||
T Consensus 142 ~~~----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 142 DER----------------AQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred Chh----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 862 13778999999999999999999 999999874 7999
Q ss_pred EEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChH
Q 018829 278 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 320 (350)
Q Consensus 278 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 320 (350)
|++|| +.+..+|||++ +|++|++++.|++++++..+.++...
T Consensus 206 iivsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~ 249 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVI-FLHQGKIEEEGAPEQLFGNPQSPRLQ 249 (257)
T ss_pred EEEeCCHHHHHHhcCEEE-EEECCEEEEeCCHHHhhhCccCHHHH
Confidence 99999 56778899996 59999999999999988766554433
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=287.52 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=161.0
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 10 ~~~~l~~~~l~~~~~~-~--~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGK-F--HA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCC-e--EE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3467999999999974 2 34 6669999999999999999999999999999999851000147999999999874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.. .......++.++|++|+...+. .++.+|+.++.......+.....+++.++++.+++...+
T Consensus 84 ~~--~~~~~~~~~~i~~~~q~~~~~~-----------~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 146 (260)
T PRK10744 84 TP--KQDIALLRAKVGMVFQKPTPFP-----------MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV---- 146 (260)
T ss_pred cc--ccchHHHhcceEEEecCCccCc-----------CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 10 0011111335677777654432 234444444322111122344556788899999985321
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
.+.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 147 ---------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 147 ---------KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred ---------HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 0145788999999999999999999 999999874 689999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
+..+||+++ +|++|++++.|++++++..+.++++..+
T Consensus 218 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 254 (260)
T PRK10744 218 AARCSDYTA-FMYLGELIEFGNTDTIFTKPAKKQTEDY 254 (260)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 778999996 5999999999999999888777766544
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=290.28 Aligned_cols=206 Identities=17% Similarity=0.187 Sum_probs=155.9
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
.++|+++.|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 26 ~~~~~~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 26 SKEEILKKTGQT---VG---VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhhcCCc---eE---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccChh
Confidence 567888888752 34 666999999999999999999999999999999999 9999999999987521100
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
......++.++|++|+...+..+ ++.+|+.++.... ........+++.++++.+++.+
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----------- 152 (269)
T cd03294 95 ELRELRRKKISMVFQSFALLPHR----------TVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEG----------- 152 (269)
T ss_pred hhhhhhcCcEEEEecCcccCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh-----------
Confidence 00011223567777765444322 3444444332211 1122344567888999999987
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHh
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~ 287 (350)
.+++.+.+||||||||++||||| ||||++||. |+|||++|| +.+.+
T Consensus 153 ------~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 153 ------WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR 226 (269)
T ss_pred ------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 45899999999999999999999 999999873 689999999 56778
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
+||+++ +|++|++++.|++++++..+...+.+.
T Consensus 227 ~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 259 (269)
T cd03294 227 LGDRIA-IMKDGRLVQVGTPEEILTNPANDYVRE 259 (269)
T ss_pred hcCEEE-EEECCEEEEeCCHHHHHhCcCcHHHHH
Confidence 999996 599999999999999988766555433
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=348.19 Aligned_cols=234 Identities=11% Similarity=0.144 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcc--c----------CCCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEE
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLR--T----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLL 110 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~--~----------~~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~ia 110 (350)
.|......+.+..|+.++++.++++. + ...+.|+++||+|+|++....++ |+|+||+|++|+++|
T Consensus 1122 ~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v---L~~lsl~i~~G~~vA 1198 (1466)
T PTZ00265 1122 LKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI---YKDLTFSCDSKKTTA 1198 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc---ccCeeEEEcCCCEEE
Confidence 45666677777889999998765321 1 01235999999999974321234 666999999999999
Q ss_pred EEcCCCChHHHHHHHHHhccCCCCCCC-----------------------------------------------------
Q 018829 111 LIGPKGSGKSSLVNRISKVFENDKFAS----------------------------------------------------- 137 (350)
Q Consensus 111 IvGpnGsGKSTLl~~I~gl~~~~~~~p----------------------------------------------------- 137 (350)
||||||||||||+++|.|+|+ |
T Consensus 1199 IVG~SGsGKSTl~~LL~r~yd-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1199 IVGETGSGKSTVMSLLMRFYD-----LKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhCC-----CccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 999999999999999999999 6
Q ss_pred -cccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHH
Q 018829 138 -ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK 216 (350)
Q Consensus 138 -~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~ 216 (350)
++|+|.+||.++. .+...+.+..+++|+|++.+|..++.+||.++.. ...++++.++
T Consensus 1274 ~~~G~I~idG~di~---------------~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-------~at~eeI~~A 1331 (1466)
T PTZ00265 1274 KNSGKILLDGVDIC---------------DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-------DATREDVKRA 1331 (1466)
T ss_pred CCCCeEEECCEEHH---------------hCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-------CCCHHHHHHH
Confidence 6999999999987 3445566666777777777888888888887643 1234568888
Q ss_pred HHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC--------------
Q 018829 217 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 273 (350)
Q Consensus 217 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------- 273 (350)
++.+++.+.+..-++++...|++. ...||||||||+|||||| |||||+||.
T Consensus 1332 ~k~A~l~~fI~~LP~GydT~VGe~------G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1332 CKFAAIDEFIESLPNKYDTNVGPY------GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405 (1466)
T ss_pred HHHcCCHHHHHhCccccCCccCCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 999998887766667777755544 567999999999999999 999999862
Q ss_pred ---CceEEEEec-hHHHhcccEEEEEecC----CeEe-ecCCccccccC
Q 018829 274 ---DKPVVVVTH-GDLLSLTDRARIRTYL----GELL-GIPPAKQIFDI 313 (350)
Q Consensus 274 ---g~TVIiiTH-~~~~~~aDri~v~l~~----G~iv-~~g~~~~l~~~ 313 (350)
++|+|+||| -...+.||+|+ +|++ |+++ +.|+|++++..
T Consensus 1406 ~~~~~TvIiIaHRlsti~~aD~Iv-vl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1406 DKADKTIITIAHRIASIKRSDKIV-VFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred ccCCCEEEEEechHHHHHhCCEEE-EEeCCCCCCCEEEEecCHHHHHhc
Confidence 689999999 45567799995 5999 9955 89999999863
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=288.28 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=159.9
Q ss_pred CCCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 70 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 70 ~~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
...++++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++
T Consensus 17 ~~~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 17 AKEHILEVKDLSIYYGE-K--RA---VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred CCCceEEEEEEEEEeCC-c--ee---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 34578999999999974 2 34 666999999999999999999999999999999863100015899999999987
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.... . .....++.++|++|+...+.. ++.+|+.++............++.+.++++.+++...+
T Consensus 91 ~~~~-~-~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 154 (268)
T PRK14248 91 LDSN-I-NVVNLRREIGMVFQKPNPFPK-----------SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV--- 154 (268)
T ss_pred cccc-c-cHHHHhccEEEEecCCccCcc-----------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch---
Confidence 5110 0 001113356677776544433 34444443321111111123345677788888885321
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--h
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 283 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~ 283 (350)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 155 ----------~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 224 (268)
T PRK14248 155 ----------KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224 (268)
T ss_pred ----------HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHH
Confidence 0145788999999999999999999 999999874 689999999 4
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.+.++|||++ +|++|++++.|++++++..+.++++..++
T Consensus 225 ~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 263 (268)
T PRK14248 225 QALRVSDRTA-FFLNGDLVEYDQTEQIFTSPKQQKTEDYI 263 (268)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHHHH
Confidence 6778999996 59999999999999999888877765544
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=285.50 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=157.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|+++...
T Consensus 2 ~~~~~~l~~~~~~-~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~- 72 (246)
T PRK14269 2 IAKTTNLNLFYGK-K--QA---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQ- 72 (246)
T ss_pred ceeeeeeEEEECC-E--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccC-
Confidence 5789999999974 2 34 677999999999999999999999999999999974100 6899999999987511
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCC-CcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ....++.++|++|+...+. .++.+|+.++....... .....++++.++++.+++.+.+.
T Consensus 73 --~-~~~~~~~i~~~~q~~~l~~-----------~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 133 (246)
T PRK14269 73 --D-VVALRKNVGMVFQQPNVFV-----------KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK----- 133 (246)
T ss_pred --C-HHHHhhhEEEEecCCcccc-----------ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-----
Confidence 0 0111234566666654432 34455555432211111 12344566788999999964210
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
+..++.+.+||||||||++||||| |||+++||. ++|||++|| +.+.
T Consensus 134 --------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 134 --------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred --------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 034778899999999999999999 999999873 899999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.+||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 206 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 241 (246)
T PRK14269 206 RVADYTA-FFHLGELIEFGESKEFFENPKQEKTKAYL 241 (246)
T ss_pred hhCcEEE-EEECCEEEEECCHHHHHhCCCcHHHHHHh
Confidence 8999996 59999999999999998776665554433
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=285.03 Aligned_cols=214 Identities=18% Similarity=0.205 Sum_probs=157.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC---cccEEEECCEeC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 149 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i 149 (350)
++++++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.. | ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~-~--~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYYNK-K--KA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEECC-e--ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 57999999999974 2 34 66799999999999999999999999999999985311 5 589999999987
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
... .......++.+++++|+...+. .++.+|+.++............++++.++++.+++...+.
T Consensus 75 ~~~--~~~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 139 (252)
T PRK14239 75 YSP--RTDTVDLRKEIGMVFQQPNPFP-----------MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-- 139 (252)
T ss_pred cCc--ccchHhhhhcEEEEecCCccCc-----------CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH--
Confidence 410 0001111335667777654433 2344454443221111112334566778899998754210
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--h
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 283 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~ 283 (350)
+..++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 140 -----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 208 (252)
T PRK14239 140 -----------DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208 (252)
T ss_pred -----------HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHH
Confidence 135788999999999999999999 999999873 689999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.+.++|||++ +|++|++++.|++++++..|.++.+..+
T Consensus 209 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 246 (252)
T PRK14239 209 QASRISDRTG-FFLDGDLIEYNDTKQMFMNPKHKETEDY 246 (252)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHHHHH
Confidence 6778999996 5999999999999999888777665443
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=291.94 Aligned_cols=205 Identities=16% Similarity=0.197 Sum_probs=154.6
Q ss_pred cEEEEEEEEEECCCc--eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++++|++++|+++. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 588999999996321 1134 677999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..........+..++|++|+... .++..++.+|+.++.... ........+++.++++.+|+...
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------ 137 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEA---------QLFENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSED------ 137 (287)
T ss_pred ccccchHHHHHhceEEEEeChhh---------hhccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh------
Confidence 10000001112245666665310 122235566665543321 12334556678899999999731
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ----------~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 138 ----------LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999874 789999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.++||+++ +|++|+++..|++++++..
T Consensus 208 ~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 208 VAEYADDVL-VLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcC
Confidence 788999996 5999999999999887654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=285.19 Aligned_cols=217 Identities=17% Similarity=0.184 Sum_probs=158.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||++.|++. ++ |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEECCc---ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 468999999999742 34 667999999999999999999999999999999875110002689999999987510
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. . .....++.++|++|+...+. .++.+|+.++............++++.++++.+++.+.+.
T Consensus 76 ~-~-~~~~~~~~i~~~~q~~~~~~-----------~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~----- 137 (250)
T PRK14240 76 D-I-DVNQLRKRVGMVFQQPNPFP-----------MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK----- 137 (250)
T ss_pred c-c-chHHHhccEEEEecCCccCc-----------ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-----
Confidence 0 0 00111335667777654333 2334444433221111122345667888888988753210
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
...++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 138 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14240 138 --------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQAS 209 (250)
T ss_pred --------HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 135788999999999999999999 999999874 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.+||+++ +|++|++++.|++++++..+.++.+..+
T Consensus 210 ~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14240 210 RISDKTA-FFLNGEIVEFGDTVDLFTNPKDKRTEDY 244 (250)
T ss_pred hhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHHh
Confidence 8999996 5999999999999999888777765543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=280.27 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=144.8
Q ss_pred EEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 75 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 75 l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
++++|++++|+... ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA---LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTG-- 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEE---EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc--
Confidence 47899999996421 1234 666999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 71 -------~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 123 (220)
T cd03293 71 -------PGPDRGYVFQQDALLPWL----------TVLDNVALGLELQ-GVPKAEARERAEELLELVGLSG--------- 123 (220)
T ss_pred -------ccCcEEEEecccccccCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 123456777765544322 3334443332111 1122344567888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| ..+
T Consensus 124 --------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 124 --------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA 195 (220)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999874 689999999 467
Q ss_pred HhcccEEEEEec--CCeEeecCCc
Q 018829 286 LSLTDRARIRTY--LGELLGIPPA 307 (350)
Q Consensus 286 ~~~aDri~v~l~--~G~iv~~g~~ 307 (350)
..+||+++ +|+ +|++++.++.
T Consensus 196 ~~~~d~i~-~l~~~~G~i~~~~~~ 218 (220)
T cd03293 196 VFLADRVV-VLSARPGRIVAEVEV 218 (220)
T ss_pred HHhCCEEE-EEECCCCEEEEEEEe
Confidence 78999996 598 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=282.66 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=150.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~- 68 (232)
T cd03218 1 LRAENLSKRYGK---RKV---VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLP- 68 (232)
T ss_pred CeEEEEEEEeCC---EEe---eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccCC-
Confidence 578999999964 235 666999999999999999999999999999999999 99999999998874110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.....+..++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 125 (232)
T cd03218 69 --MHKRARLGIGYLPQEASIFRKL----------TVEENILAVLEIR-GLSKKEREEKLEELLEEFHITH---------- 125 (232)
T ss_pred --HhHHHhccEEEecCCccccccC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 0011122456777665444332 3444444332211 1122344567788999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.+
T Consensus 126 -------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 126 -------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLS 198 (232)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45889999999999999999999 999999874 789999999 57889
Q ss_pred cccEEEEEecCCeEeecCCccccccC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+||+++ +|++|+++..|++++++..
T Consensus 199 ~~d~i~-~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 199 ITDRAY-IIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred hCCEEE-EEECCeEEEEeCHHHhhcC
Confidence 999996 5999999999998877653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=284.97 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=153.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+++++|++++|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (241)
T PRK10895 2 ATLTAKNLAKAYKG-R--RV---VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISLL 70 (241)
T ss_pred ceEEEeCcEEEeCC-E--EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 47999999999964 2 34 677999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .....++.++|++|+...+..+ ++.+|+.+.............+..+.++++.+++.+
T Consensus 71 ~---~~~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 129 (241)
T PRK10895 71 P---LHARARRGIGYLPQEASIFRRL----------SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-------- 129 (241)
T ss_pred C---HHHHHHhCeEEeccCCcccccC----------cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH--------
Confidence 0 0011123456777665444322 344444433211111122345567888999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 130 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~ 200 (241)
T PRK10895 130 ---------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET 200 (241)
T ss_pred ---------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 45888999999999999999999 999999873 789999999 478
Q ss_pred HhcccEEEEEecCCeEeecCCccccccC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
..+||+++ +|++|++++.|++++++..
T Consensus 201 ~~~~d~v~-~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 201 LAVCERAY-IVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHhcCEEE-EEeCCeEEeeCCHHHHhcC
Confidence 89999996 5999999999999887653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=298.92 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=157.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||++ ||+++|++ . . + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~-~l~k~~~~-~-~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGD-L-C-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCC-E-E-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 5788 99999964 1 2 2 5999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
........++.++|++|+...+..+ ++.+|+.++.. ....+++.++++.+++.+
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~--------- 120 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFPHY----------KVRGNLRYGMA-------KSMVAQFDKIVALLGIEP--------- 120 (352)
T ss_pred cccccchhhCCEEEEcCCcccCCCC----------cHHHHHHhhhh-------hhhHHHHHHHHHHcCCch---------
Confidence 0000011123455666554433222 55566655432 123456888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
++++++.+||||||||++||||| ||||++||. ++|+|+||| +++
T Consensus 121 --------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 121 --------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 56899999999999999999999 999999873 789999999 578
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
..+||+++ +|++|++++.|++++++..|.......++.
T Consensus 193 ~~~~d~i~-~l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 193 LRLADRVV-VLEQGKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred HHhCCEEE-EEeCCEEEEecCHHHHHhCcchhhhhcccC
Confidence 89999996 599999999999999999988766555554
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=325.89 Aligned_cols=234 Identities=13% Similarity=0.128 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|..+...+....|+.++++.+++.... ....++++||+|+|+++.. ++ |+|+||+|++|+.++|+|+|
T Consensus 417 ~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~vaivG~s 492 (694)
T TIGR01846 417 LWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EV---LSNLNLDIKPGEFIGIVGPS 492 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEECCCCEEEEECCC
Confidence 4566667777788999999877653221 1235999999999964432 24 66699999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+|+|+|+++ |++|+|.+||.++. .+...+.+...++|+|+..++..++.+|+.
T Consensus 493 GsGKSTL~~ll~g~~~-----p~~G~I~idg~~i~---------------~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 493 GSGKSTLTKLLQRLYT-----PQHGQVLVDGVDLA---------------IADPAWLRRQMGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred CCCHHHHHHHHhcCCC-----CCCceEEECCEehh---------------hCCHHHHHHhCeEEccCCeehhhhHHHHHh
Confidence 9999999999999999 99999999999986 223333444455566666666677778887
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ....+++.++++.+++.+.+.+.++++...+ .+....||||||||++||||| ||
T Consensus 553 ~~~~-------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i------~~~g~~LSgGq~qri~lARall~~~~ililDE 619 (694)
T TIGR01846 553 LCNP-------GAPFEHVIHAAKLAGAHDFISELPQGYNTEV------GEKGANLSGGQRQRIAIARALVGNPRILIFDE 619 (694)
T ss_pred cCCC-------CCCHHHHHHHHHHcChHHHHHhCcCccCcEe------cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5432 1123456666777777654433334444433 344668999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
||++||. ++|+|+||| -...+.||+|+ +|++|++++.|+++++++..
T Consensus 620 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii-~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 620 ATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRII-VLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred CCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEE-EEeCCEEEEeCCHHHHHHcC
Confidence 9999874 799999999 34456699995 59999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=284.88 Aligned_cols=215 Identities=16% Similarity=0.166 Sum_probs=155.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe----
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 148 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~---- 148 (350)
++|+++|++++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG---KG---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCCc---eE---eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 579999999999642 34 666999999999999999999999999999999999 999999999876
Q ss_pred -CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 149 -GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 149 -i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
+......+.....++.+++++|+...... ...++.+|+.+.............++.+.++++.+++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-- 140 (253)
T TIGR02323 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLR--------MRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPT-- 140 (253)
T ss_pred ccccCCHHHHHHhhhcceEEEEeCcccccC--------ccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChh--
Confidence 43100000001112356777777532110 0002222332211100000112345677889999999631
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiT 281 (350)
.+++.+..||||||||++||||| |||+++||. +.|||++|
T Consensus 141 --------------~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs 206 (253)
T TIGR02323 141 --------------RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206 (253)
T ss_pred --------------hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35889999999999999999999 999999873 78999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
| +.+..+||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 207 H~~~~~~~~~d~~~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~l 249 (253)
T TIGR02323 207 HDLGVARLLAQRLL-VMQQGRVVESGLTDQVLDDPQHPYTQLLV 249 (253)
T ss_pred CCHHHHHHhcCEEE-EEECCEEEEECCHHHHhcCCCCHHHHHHH
Confidence 9 56777899996 59999999999999998877666655444
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=289.36 Aligned_cols=200 Identities=12% Similarity=0.136 Sum_probs=152.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~~~~-~--~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~- 68 (271)
T PRK13638 1 MLATSDLWFRYQD-E--PV---LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYS- 68 (271)
T ss_pred CeEEEEEEEEcCC-c--cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccc-
Confidence 5899999999974 2 34 666999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.. .....++.++|++|+.... ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ~~-~~~~~~~~i~~v~q~~~~~---------~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 128 (271)
T PRK13638 69 KR-GLLALRQQVATVFQDPEQQ---------IFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQH--------- 128 (271)
T ss_pred cC-CHHHHHhheEEEeeChhhc---------cccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 00 0011123456777664321 11113344544432211 1223344566788999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
+.++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 129 --------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 129 --------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred --------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.+||+++ +|++|++++.|++++++..+
T Consensus 201 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 201 EISDAVY-VLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHhcCh
Confidence 8999996 59999999999998887653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=284.40 Aligned_cols=219 Identities=17% Similarity=0.176 Sum_probs=160.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~-~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE-K--QA---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC-e--ee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 468999999999974 2 34 66699999999999999999999999999999998710000278999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .......++.++|++|+...+...+. +|+.++.............+++.++++.+++.+.+.
T Consensus 76 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~-----------enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 138 (251)
T PRK14270 76 K--DVDVVELRKRVGMVFQKPNPFPMSIY-----------DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK---- 138 (251)
T ss_pred c--cccHHHHHhheEEEecCCCcCCCcHH-----------HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh----
Confidence 0 00001113356777777554432244 444433221111112344566778899998853210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
...++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 139 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 209 (251)
T PRK14270 139 ---------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA 209 (251)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH
Confidence 035788999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+|||++ +|++|++++.|++++++..+.++.+..++
T Consensus 210 ~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14270 210 SRVSDYTA-FFLMGDLIEFNKTEKIFLEPQKKETEDYI 246 (251)
T ss_pred HHhcCEEE-EEECCeEEEeCCHHHHhcCCCChHHHHhh
Confidence 78999996 59999999999999998888887765543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=280.32 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=164.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++++.++|+.|+|+. .++ +++|||+|++||+++|+|||||||||.+.++.|+.+ |++|+|.++|.|++.
T Consensus 2 ~~~L~a~~l~K~y~k---r~V---v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT~ 70 (243)
T COG1137 2 MSTLVAENLAKSYKK---RKV---VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDITK 70 (243)
T ss_pred CcEEEehhhhHhhCC---eee---eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCccccc
Confidence 457899999999975 345 555999999999999999999999999999999999 999999999999973
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCC-CcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .-+.-.|..++|.+|+...|-.+ +|.+|+..-+..+... ...+.+.++.++|+.+++.+
T Consensus 71 l---Pm~~RArlGigYLpQE~SIFr~L----------tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h------ 131 (243)
T COG1137 71 L---PMHKRARLGIGYLPQEASIFRKL----------TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH------ 131 (243)
T ss_pred C---ChHHHhhcCcccccccchHhhcC----------cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH------
Confidence 2 22222344667777777666554 4444444433333211 22345556889999999998
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
+.+++..+||||||+|+.||||| |||+++.|+ |..|++.-| .
T Consensus 132 -----------lr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 132 -----------LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred -----------HhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 67999999999999999999999 999999886 899999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 316 (350)
+...+|||.++ +++|+++.+|+++++.++|..
T Consensus 201 EtL~i~dRaYI-i~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 201 ETLDICDRAYI-ISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HHHhhhheEEE-EecCeEEecCCHHHHhcChhh
Confidence 88899999975 999999999999999988754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=284.87 Aligned_cols=211 Identities=18% Similarity=0.256 Sum_probs=155.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-----cccEEEECC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNS 146 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-----~~G~I~i~G 146 (350)
+++|+++||+++|+. . ++ |+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|
T Consensus 2 ~~~l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~~~~~~G~i~~~g 70 (253)
T PRK14267 2 KFAIETVNLRVYYGS-N--HV---IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE-----LNEEARVEGEVRLFG 70 (253)
T ss_pred cceEEEEeEEEEeCC-e--ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----cccCCCCceEEEECC
Confidence 357999999999964 2 34 666999999999999999999999999999999998 6 499999999
Q ss_pred EeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC-CCcHHHHHHHHHHHHHcCCCCc
Q 018829 147 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 147 ~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
+++..... .... .++.++|++|+...+... ++.+|+.++...... .+.....+++.++++.+++...
T Consensus 71 ~~i~~~~~-~~~~-~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (253)
T PRK14267 71 RNIYSPDV-DPIE-VRREVGMVFQYPNPFPHL----------TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE 138 (253)
T ss_pred EEcccccc-ChHH-HhhceeEEecCCccCCCC----------cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc
Confidence 98741000 0011 123466777765444332 344444433221111 1223445667888999998542
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEe
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 281 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiT 281 (350)
+. ..+++.+.+||||||||++||||| |||+++||. ++|||++|
T Consensus 139 ~~-------------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 139 VK-------------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred hh-------------hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 10 035788999999999999999999 999999874 68999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCCh
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 319 (350)
| +.+..+||+++ +|++|++++.|++++++..+.++..
T Consensus 206 H~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~ 244 (253)
T PRK14267 206 HSPAQAARVSDYVA-FLYLGKLIEVGPTRKVFENPEHELT 244 (253)
T ss_pred CCHHHHHhhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHH
Confidence 9 56778999996 5999999999999998876654443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=283.30 Aligned_cols=213 Identities=15% Similarity=0.193 Sum_probs=159.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-----ccEEEECCE
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 147 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~ 147 (350)
++++++|++++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~-~--~i---l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 3 PKIKIRGVNFFYHK-H--QV---LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNE 71 (251)
T ss_pred ceEEEEEEEEEECC-e--eE---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCE
Confidence 57999999999974 2 34 666999999999999999999999999999999998 76 699999998
Q ss_pred eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 148 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 148 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
++... .......++.++|++|+...+. .++.+|+.++.........+..++.+.++++.+++.+.+.
T Consensus 72 ~~~~~--~~~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 138 (251)
T PRK14249 72 NIYSP--NLDVVNLRKRVGMVFQQPNPFP-----------KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138 (251)
T ss_pred Ecccc--ccChHHhhceEEEEecCCccCc-----------CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh
Confidence 87410 0001111335667766654332 2445555544321111112234456777788888754210
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
+.+++.+.+||||||||++||||| |||+++||. ++|||++||
T Consensus 139 -------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~ 205 (251)
T PRK14249 139 -------------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205 (251)
T ss_pred -------------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 145889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+..+||+++ +|++|++++.|++++++..|.++.+..++
T Consensus 206 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14249 206 MQQAARASDWTG-FLLTGDLVEYGRTGEIFSRPRDKRTEDYI 246 (251)
T ss_pred HHHHHhhCCEEE-EEeCCeEEEeCCHHHHHhCCCChHHHHHH
Confidence 57788999996 59999999999999999888887765544
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=286.26 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=159.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|+. . ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~~-~--~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYGK-K--EA---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEECC-e--ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 457999999999964 2 34 67799999999999999999999999999999999611001479999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .......++.++|++|+...+. .++.+|+.++............++++.++++.+++.+.+
T Consensus 92 ~--~~~~~~~~~~i~~v~q~~~~~~-----------~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i----- 153 (267)
T PRK14237 92 K--EINVYEMRKHIGMVFQRPNPFA-----------KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV----- 153 (267)
T ss_pred c--cCChHHHhcceEEEecCCcccc-----------ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----
Confidence 0 0000111335667777654432 244455544332111112334556788889999986421
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
.+.+++.+.+||||||||++||||| |||+++||. +.|||++|| +.+
T Consensus 154 --------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 225 (267)
T PRK14237 154 --------KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQA 225 (267)
T ss_pred --------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 0145889999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
..+||+++ +|++|++++.|++++++..+.+..+..
T Consensus 226 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 260 (267)
T PRK14237 226 ARASDYTA-FFYLGDLIEYDKTRNIFTNPKLQSTND 260 (267)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHH
Confidence 78999996 599999999999999988776655443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=288.27 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=152.8
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++|++++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ml~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~- 69 (274)
T PRK13644 1 MIRLENVSYSYPDGTP--A---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGDF- 69 (274)
T ss_pred CEEEEEEEEEcCCCCc--e---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCcc-
Confidence 5889999999963332 4 777999999999999999999999999999999999 9999999999987511
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
......++.++|++|++.. .++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 70 --~~~~~~~~~i~~v~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 128 (274)
T PRK13644 70 --SKLQGIRKLVGIVFQNPET---------QFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEK--------- 128 (274)
T ss_pred --ccHHHHHhheEEEEEChhh---------hcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH---------
Confidence 0000112245666665421 012225556655443221 1233455667888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
..++++..||||||||++||||| ||||++||. |.|||++|| +.+
T Consensus 129 --------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~- 199 (274)
T PRK13644 129 --------YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL- 199 (274)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-
Confidence 45889999999999999999999 999999873 899999999 455
Q ss_pred hcccEEEEEecCCeEeecCCccccccCC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
..||+++ +|++|++++.|++++++..+
T Consensus 200 ~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 200 HDADRII-VMDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred hhCCEEE-EEECCEEEEECCHHHHhcCh
Confidence 5699996 59999999999999887654
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=283.38 Aligned_cols=220 Identities=17% Similarity=0.224 Sum_probs=160.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
..++++|++++|+. . .+ |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++...
T Consensus 3 ~~l~~~nl~~~~~~-~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK-N--HA---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC-e--eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 46899999999974 2 34 666999999999999999999999999999999985100003689999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. . .....++.+++++|+...+... ++.+|+.++............++++.++++.+++...+.
T Consensus 77 ~-~-~~~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 139 (252)
T PRK14256 77 G-V-DPVSIRRRVGMVFQKPNPFPAM----------SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK----- 139 (252)
T ss_pred c-C-ChHHhhccEEEEecCCCCCCcC----------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----
Confidence 0 0 0111133566777765544322 344444433221111122344566788899999864210
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
..+++.+.+||||||||++||||| |||+++||. ++|||++|| ..+.
T Consensus 140 --------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~ 211 (252)
T PRK14256 140 --------DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAA 211 (252)
T ss_pred --------HHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHH
Confidence 034678999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
.+||+++ +|++|++++.|++++++..+.+++++.++.
T Consensus 212 ~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (252)
T PRK14256 212 RVSDYTA-FFYMGDLVECGETKKIFTTPEKKQTEDYIT 248 (252)
T ss_pred hhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHHHHHHh
Confidence 8999996 599999999999999999888887665543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=289.03 Aligned_cols=199 Identities=16% Similarity=0.218 Sum_probs=153.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++||+++|+... .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~---l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 4 EIIRVEHISFRYPDAA-TYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSEE 74 (279)
T ss_pred ceEEEEEEEEEeCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 5799999999996422 134 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
..... ++.++|++|+... .++..++.+|+.++.... .....+..+++.++++.+|+.+
T Consensus 75 ---~~~~~-~~~i~~~~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 132 (279)
T PRK13635 75 ---TVWDV-RRQVGMVFQNPDN---------QFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED-------- 132 (279)
T ss_pred ---cHHHH-hhheEEEEeCHHH---------hcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 00111 2245666665410 112225666666543322 1233455677899999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+.++.+..||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 133 ---------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 56899999999999999999999 999999873 689999999 45
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+. .||+++ +|++|++++.|++++++..
T Consensus 204 ~~-~~d~i~-~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 204 AA-QADRVI-VMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HH-cCCEEE-EEECCEEEEECCHHHHhcC
Confidence 54 599996 5999999999999887664
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=269.17 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=158.8
Q ss_pred CcEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+|+++++++..+.+. ...+ |++|+|.|.+||.++||||||||||||+-+++|+.. |++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~I---L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSI---LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeE---eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhh
Confidence 3789999999886543 3456 566999999999999999999999999999999999 999999999999864
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
...-....++.++++|+||.+.....+ +..+||..+++.... ........+.++|+.+||...
T Consensus 77 ldEd~rA~~R~~~vGfVFQSF~Lip~l----------tAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~R------ 139 (228)
T COG4181 77 LDEDARAALRARHVGFVFQSFHLIPNL----------TALENVALPLELRGE-SSADSRAGAKALLEAVGLGKR------ 139 (228)
T ss_pred cCHHHHHHhhccceeEEEEeeeccccc----------hhhhhccchhhhcCC-ccccHHHHHHHHHHHhCcccc------
Confidence 333334455666778888776554322 667888887775543 234556778899999999984
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-~~ 284 (350)
++.||.+||||||||||||||| ||||-+||. |.|+|+||| ..
T Consensus 140 -----------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 140 -----------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred -----------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 5899999999999999999999 999999873 999999999 45
Q ss_pred HHhcccEEEEEecCCeEeec
Q 018829 285 LLSLTDRARIRTYLGELLGI 304 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~ 304 (350)
++.-|+|+ +.|..|+|++.
T Consensus 209 LA~Rc~R~-~r~~~G~l~~~ 227 (228)
T COG4181 209 LAARCDRQ-LRLRSGRLVED 227 (228)
T ss_pred HHHhhhhe-eeeecceeccC
Confidence 66679999 57999999864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=286.42 Aligned_cols=219 Identities=16% Similarity=0.216 Sum_probs=159.8
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++||+++|++ . .+ |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~~-~--~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE-K--QA---LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC-E--EE---EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 4568999999999974 2 34 7779999999999999999999999999999999971000038999999999874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC-CCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
... ......++.++|++|+...+...+. +|+.++...... .......+++.++++.+++.+.+.
T Consensus 90 ~~~--~~~~~~~~~i~~v~q~~~~~~~tv~-----------enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 154 (267)
T PRK14235 90 DPR--LDVVELRARVGMVFQKPNPFPKSIY-----------ENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-- 154 (267)
T ss_pred ccc--cchHHHhhceEEEecCCCCCCCcHH-----------HHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh--
Confidence 100 0001113356777777554433344 444433221111 122344567788999999964210
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--h
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 283 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~ 283 (350)
+.+++.+.+||||||||++||||| ||||++||. +.|||++|| +
T Consensus 155 -----------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~ 223 (267)
T PRK14235 155 -----------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223 (267)
T ss_pred -----------HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence 034788999999999999999999 999999874 689999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.+..+||+++ +|++|++++.|++++++..+.++.++.+
T Consensus 224 ~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 261 (267)
T PRK14235 224 QAARVSQRTA-FFHLGNLVEVGDTEKMFTNPDDPRTQDY 261 (267)
T ss_pred HHHhhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHHHHH
Confidence 7778999996 5999999999999999877666555443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=277.11 Aligned_cols=187 Identities=19% Similarity=0.216 Sum_probs=140.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++|++++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~--~i---l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV--AA---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLR 70 (214)
T ss_pred CEEEEeeeEEeCCCc--ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCC
Confidence 588999999995233 34 666999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.......++.++|++|+...+... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (214)
T TIGR02673 71 -GRQLPLLRRRIGVVFQDFRLLPDR----------TVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEH--------- 129 (214)
T ss_pred -HHHHHHHHhheEEEecChhhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000001123456666655433221 4445554432211 1122345567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 130 --------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999874 799999999 5777
Q ss_pred hcccEEEEEecCCe
Q 018829 287 SLTDRARIRTYLGE 300 (350)
Q Consensus 287 ~~aDri~v~l~~G~ 300 (350)
.+||+++ +|++|+
T Consensus 202 ~~~d~i~-~l~~G~ 214 (214)
T TIGR02673 202 RVAHRVI-ILDDGR 214 (214)
T ss_pred HhcCEEE-EecCCC
Confidence 8999996 599884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=283.23 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=155.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFSAYYGE-K--KA---VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeEEEeCC-c--ee---EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 57999999999974 2 34 677999999999999999999999999999999987110002899999999887521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. . .....++.++|++|+...+...+. +|+.++............++.+.++++.+++...+
T Consensus 76 ~-~-~~~~~~~~i~~~~q~~~~~~~tv~-----------e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 136 (250)
T PRK14262 76 Q-L-DVTEYRKKVGMVFQKPTPFPMSIY-----------DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV------ 136 (250)
T ss_pred h-h-hHHHhhhhEEEEecCCccCcccHH-----------HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh------
Confidence 0 0 011113356777776554432244 44443321111112234456678889999986421
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
....++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 137 -------~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 137 -------KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred -------HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 0135888999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCCh
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 319 (350)
.+||+++ +|++|+++..|+++++...+.++..
T Consensus 210 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 241 (250)
T PRK14262 210 RIADYIA-FMYRGELIEYGPTREIVERPKNKLT 241 (250)
T ss_pred HhCCEEE-EEECCEEEEecCHHHHHhCCCChHH
Confidence 8999996 5999999999999998776654443
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=281.83 Aligned_cols=199 Identities=14% Similarity=0.093 Sum_probs=149.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGA-H--QA---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECC-e--ee---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 5899999999964 2 34 677999999999999999999999999999999999 99999999998863100
Q ss_pred ccccc--ccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 154 FLQEY--TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 154 ~~~~~--~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..... ...++.++|++|+...+... ++.+|+.+...........+..+++.++++.+|+..
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------- 133 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWPHL----------TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP------- 133 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccCCC----------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------
Confidence 00000 11123456777765544332 333443321111111122344567888999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
.+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 134 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 134 ----------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999874 799999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
+..+||+++ +|++|++++.|+++++.
T Consensus 204 ~~~~~d~i~-~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 204 ARKTASRVV-YMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCEEE-EEECCEEEEeCCHHHhc
Confidence 678899996 59999999999987753
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=273.62 Aligned_cols=185 Identities=13% Similarity=0.186 Sum_probs=143.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~--- 66 (213)
T cd03301 1 VELENVTKRFGNV---TA---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTD--- 66 (213)
T ss_pred CEEEeeEEEECCe---ee---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc---
Confidence 4789999999752 34 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.+++++|+...+... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (213)
T cd03301 67 ---LPPKDRDIAMVFQNYALYPHM----------TVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEH---------- 122 (213)
T ss_pred ---CCcccceEEEEecChhhccCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 111123456666665433221 3444444432211 1123445567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 123 -------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 123 -------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred -------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecC
Q 018829 287 SLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g 305 (350)
.+||+++ +|++|++++.|
T Consensus 196 ~~~d~i~-~l~~g~~~~~g 213 (213)
T cd03301 196 TMADRIA-VMNDGQIQQIG 213 (213)
T ss_pred HhcCeEE-EEECCEEEecC
Confidence 8999996 59999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=284.22 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=155.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+++++|++++|++ .++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 3 ~~l~i~~v~~~~~~---~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 3 KRIDVKDLNIYYGS---FHA---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred ccEEEeeEEEEECC---Eee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc
Confidence 36899999999974 234 666999999999999999999999999999999997110012699999999887410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.. .....++.+++++|+...+... ++.+|+.++............++.+.++++.+++.+.+
T Consensus 77 ~~--~~~~~~~~i~~~~q~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 138 (258)
T PRK14241 77 GV--DPVAVRRTIGMVFQRPNPFPTM----------SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------ 138 (258)
T ss_pred cc--ChHHHhcceEEEccccccCCCC----------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------
Confidence 00 0011133567777765544322 33344443322111112344556788889999985311
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
....++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 139 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~ 211 (258)
T PRK14241 139 -------KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAA 211 (258)
T ss_pred -------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 0135788999999999999999999 999999874 689999999 5677
Q ss_pred hcccEEEEEec------CCeEeecCCccccccCCCCCChH
Q 018829 287 SLTDRARIRTY------LGELLGIPPAKQIFDIPESSDPE 320 (350)
Q Consensus 287 ~~aDri~v~l~------~G~iv~~g~~~~l~~~~~~~~~~ 320 (350)
++||++++ |+ +|++++.|++++++..+..+++.
T Consensus 212 ~~~d~i~~-l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 250 (258)
T PRK14241 212 RVSDQTAF-FNLEATGKPGRLVEIDDTEKIFSNPTQKATE 250 (258)
T ss_pred HhCCEEEE-EecccCCCCceEEecCCHHHHHhCcCcHHHH
Confidence 89999964 85 89999999999998766655443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=305.37 Aligned_cols=233 Identities=12% Similarity=0.126 Sum_probs=176.6
Q ss_pred HHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHH
Q 018829 52 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 123 (350)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl 123 (350)
...+++.|++++++|..+. ..+.++++||+|.|.+++++ |+||||++.+|+.+|||||||+||||++
T Consensus 507 iDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v-----l~disF~v~pGktvAlVG~SGaGKSTim 581 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV-----LSDISFTVQPGKTVALVGPSGAGKSTIM 581 (790)
T ss_pred hhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce-----eecceEEecCCcEEEEECCCCCchhHHH
Confidence 3455999999999887664 23469999999999888776 8889999999999999999999999999
Q ss_pred HHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC
Q 018829 124 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 203 (350)
Q Consensus 124 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~ 203 (350)
|+|.++++ .++|.|.+||+|+. .+..+..|..++.|+|+.-+|+.++..||.++..
T Consensus 582 RlLfRffd-----v~sGsI~iDgqdIr---------------nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~---- 637 (790)
T KOG0056|consen 582 RLLFRFFD-----VNSGSITIDGQDIR---------------NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP---- 637 (790)
T ss_pred HHHHHHhh-----ccCceEEEcCchHH---------------HHHHHHHHHhcCcccCcceeecceeeeheeecCC----
Confidence 99999999 99999999999986 2333334444455555555556666677776554
Q ss_pred CCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-
Q 018829 204 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 273 (350)
Q Consensus 204 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~- 273 (350)
....+++.++++.+++.+.+..=+.++-.- ..++.-.|||||||||||||++ ||.||+||.
T Consensus 638 ---~AsneevyaAAkAA~IHdrIl~fPegY~t~------VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~ 708 (790)
T KOG0056|consen 638 ---SASNEEVYAAAKAAQIHDRILQFPEGYNTR------VGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708 (790)
T ss_pred ---CCChHHHHHHHHHhhHHHHHhcCchhhhhh------hhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc
Confidence 223345566666666655432212222222 2344446999999999999998 999999873
Q ss_pred --------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 274 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 274 --------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++|-|+|.| -...-.||.|. ++++|+|+|.|.|++++.++.-.|.+++.
T Consensus 709 tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~IL-vi~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 709 TERAIQAALARLCANRTTIVVAHRLSTIVNADLIL-VISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred cHHHHHHHHHHHhcCCceEEEeeeehheecccEEE-EEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 899999999 34456799996 59999999999999999987766655543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=279.11 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=146.2
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++||+++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (222)
T cd03224 1 LEVENLNAGYGK-S--QI---LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLP- 68 (222)
T ss_pred CEEeeEEeecCC-e--eE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCCCC-
Confidence 578999999964 2 34 677999999999999999999999999999999999 99999999998875210
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHc-CCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~~~~~~~~~~ 233 (350)
.....++.++|++|+...+..+ ++.+|+.++..... .....+.+.++++.+ ++.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~--------- 124 (222)
T cd03224 69 --PHERARAGIGYVPEGRRIFPEL----------TVEENLLLGAYARR---RAKRKARLERVYELFPRLKE--------- 124 (222)
T ss_pred --HHHHHhcCeEEeccccccCCCC----------cHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhh---------
Confidence 0011123456666665444332 44455544322111 123344566777777 4665
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 125 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 125 --------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred --------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999874 789999999 5678
Q ss_pred hcccEEEEEecCCeEeecCCcccccc
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.+||+++ +|++|++++.|++++++.
T Consensus 197 ~~~d~i~-~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 197 EIADRAY-VLERGRVVLEGTAAELLA 221 (222)
T ss_pred HhccEEE-EeeCCeEEEeCCHHHHhc
Confidence 9999996 599999999998877653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=305.75 Aligned_cols=234 Identities=15% Similarity=0.180 Sum_probs=183.7
Q ss_pred chhHHHHHHHHHHHHHHHHHccchhcccC-----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 42 DSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 42 ~~w~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
..|.++...|.+..|+.+.|...+..... +...+.++++++.= ++...+. |+++||++.+||.+|||||||
T Consensus 297 ~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~P-Pg~~~pi---l~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 297 ANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAP-PGQKKPI---LKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecC-CCCCCcc---eecceeEecCCceEEEECCCC
Confidence 37999999999999999999877654332 34579999999854 3433455 556999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||.|+|.|.++ |.+|.|.+||.++. .+....+-.+++|.+|++.+|..|+.+||+
T Consensus 373 SGKSTLaR~lvG~w~-----p~~G~VRLDga~l~---------------qWd~e~lG~hiGYLPQdVeLF~GTIaeNIa- 431 (580)
T COG4618 373 SGKSTLARLLVGIWP-----PTSGSVRLDGADLR---------------QWDREQLGRHIGYLPQDVELFDGTIAENIA- 431 (580)
T ss_pred ccHHHHHHHHHcccc-----cCCCcEEecchhhh---------------cCCHHHhccccCcCcccceecCCcHHHHHH-
Confidence 999999999999999 99999999999886 233333344445555555555555666664
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
...++.+.+++.++++..|.++-+.+-+++++..|++. ...||||||||+++|||| |||
T Consensus 432 ------Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~------G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 432 ------RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG------GATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred ------hccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC------CCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 22234455667778888887776655566676655554 458999999999999999 999
Q ss_pred hcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.++||. |.|+|+||| -.+...+|+|. +|++|++-..|+.++++.+
T Consensus 500 NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil-vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 500 NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL-VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee-eecCChHHhcCCHHHHHHH
Confidence 999984 999999999 57778899996 5999999999999998765
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=346.02 Aligned_cols=234 Identities=12% Similarity=0.079 Sum_probs=175.4
Q ss_pred hHHHHHHHHHHHHHHHHHccchhccc------C-----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEE
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRT------R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLI 112 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~------~-----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIv 112 (350)
|........+++|+.++++.++|... . ..+.|+++||+|+|.++.+ ++ |+|+||+|++||.+|||
T Consensus 1193 ~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~-~v---L~~isl~I~~GekvaIV 1268 (1495)
T PLN03232 1193 ASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP-PV---LHGLSFFVSPSEKVGVV 1268 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC-cc---cccceEEEcCCCEEEEE
Confidence 33444556667799999987665321 0 1235999999999965432 34 67799999999999999
Q ss_pred cCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHh
Q 018829 113 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME 192 (350)
Q Consensus 113 GpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~ 192 (350)
|+||||||||+++|.|+++ |++|+|.+||.|+. .+..++.|...++|+|++.+|..++.+
T Consensus 1269 G~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~di~---------------~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1269 GRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDVA---------------KFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CCCCCCHHHHHHHHhCCCc-----CCCceEEECCEEhh---------------hCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 9999999999999999999 99999999999986 122333344444455555555556666
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--------
Q 018829 193 GVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------- 264 (350)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------- 264 (350)
|+..+. +..++++.++++.+++.+.+....+++...|++ ....||||||||++|||||
T Consensus 1329 NL~~~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e------~G~~LSgGQrQrlaLARALLr~~~ILI 1394 (1495)
T PLN03232 1329 NIDPFS--------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSE------GGENFSVGQRQLLSLARALLRRSKILV 1394 (1495)
T ss_pred HcCCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecC------CCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 665321 123456778888888877655555555554443 4567999999999999999
Q ss_pred -chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCC
Q 018829 265 -NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316 (350)
Q Consensus 265 -DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 316 (350)
||||++||. ++|+|+||| -.....||||+ +|++|++++.|+|+++++.+..
T Consensus 1395 LDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl-VL~~G~ivE~Gt~~eLl~~~~~ 1462 (1495)
T PLN03232 1395 LDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL-VLSSGQVLEYDSPQELLSRDTS 1462 (1495)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCC
Confidence 999999873 899999999 34445699996 5999999999999999987543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=282.22 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=157.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~---~~~---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN---YEA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC---eee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 47999999999974 234 666999999999999999999999999999999986100003789999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. . .....++.+++++|+...+...+.+| +.++............++++.++++.+++....
T Consensus 77 ~-~-~~~~~~~~i~~~~q~~~~~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14251 77 K-M-DLVELRKEVGMVFQQPTPFPFSVYDN-----------VAYGLKIAGVKDKELIDQRVEESLKQAAIWKET------ 137 (251)
T ss_pred c-c-hHHHhhccEEEEecCCccCCCcHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch------
Confidence 0 0 00111335677777755443234444 433221111111233445677888999885310
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
...+++.+.+||||||||++||||| |||+++||. +.|||++|| +.+.
T Consensus 138 -------~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 138 -------KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred -------HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 0135788999999999999999999 999999874 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++||+++ +|++|++++.|++++++..+.+.+++.++
T Consensus 211 ~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14251 211 RISDQTA-FLMNGDLIEAGPTEEMFIAPKKQITSDYL 246 (251)
T ss_pred hhcCEEE-EEECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 8999996 59999999999999998887776654443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=277.55 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=146.5
Q ss_pred CcEEEEEEEEEECCCce-EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~-~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++++++||+++|+.+.. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV---LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSK 75 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence 57999999999964321 234 677999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
....+.....++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+|+.+
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~------- 137 (233)
T PRK11629 76 LSSAAKAELRNQKLGFIYQFHHLLPDF----------TALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEH------- 137 (233)
T ss_pred CCHHHHHHHHhccEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111000011123567777775544332 3334443322111 1122345567889999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 138 ----------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 138 ----------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45889999999999999999999 999999873 789999999 4
Q ss_pred HHHhcccEEEEEecCCeEeecCCc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
.+.. +|+++ +|++|++++.++.
T Consensus 208 ~~~~-~~~~~-~l~~G~i~~~~~~ 229 (233)
T PRK11629 208 LAKR-MSRQL-EMRDGRLTAELSL 229 (233)
T ss_pred HHHh-hCEEE-EEECCEEEEEecc
Confidence 5555 57885 5999999987753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=281.17 Aligned_cols=217 Identities=19% Similarity=0.186 Sum_probs=158.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQA---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75 (249)
T ss_pred CeEEEeccEEEECC---eee---eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc
Confidence 47899999999974 234 666999999999999999999999999999999998110012589999999887410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .....++.++|++|+...+...+. +|+.++............++++.++++.+++.+.+.
T Consensus 76 ~---~~~~~~~~i~~~~q~~~~~~~tv~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 136 (249)
T PRK14253 76 I---DVADLRIKVGMVFQKPNPFPMSIY-----------ENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK----- 136 (249)
T ss_pred c---chHHHHhheeEEecCCCcCcccHH-----------HHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-----
Confidence 0 011113356777776554432244 444433221111112344566777888888864210
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
+.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 137 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 208 (249)
T PRK14253 137 --------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208 (249)
T ss_pred --------HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 145788999999999999999999 999999874 689999999 5778
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.+||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 209 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (249)
T PRK14253 209 RISDRTA-FFLMGELVEHDDTQVIFSNPKDDRTQGYV 244 (249)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHHcCCCChHHHHHh
Confidence 8999996 59999999999999988877777665443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=277.42 Aligned_cols=190 Identities=17% Similarity=0.194 Sum_probs=143.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++|++++|+.+. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~ 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGR--QA---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITRLK 70 (222)
T ss_pred CEEEEeeEEEecCCC--eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCC
Confidence 488999999994233 34 677999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.......++.++|++|+...+... ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (222)
T PRK10908 71 -NREVPFLRRQIGMIFQDHHLLMDR----------TVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLD--------- 129 (222)
T ss_pred -hhHHHHHHhheEEEecCccccccc----------cHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000001123456777665433222 4445554432211 1222344566788999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
.+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 130 --------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred --------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999874 789999999 5777
Q ss_pred hcccEEEEEecCCeEee
Q 018829 287 SLTDRARIRTYLGELLG 303 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~ 303 (350)
.+||+++ +|++|+++.
T Consensus 202 ~~~d~i~-~l~~G~i~~ 217 (222)
T PRK10908 202 RRSYRML-TLSDGHLHG 217 (222)
T ss_pred HhCCEEE-EEECCEEcc
Confidence 8999996 599999864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=277.09 Aligned_cols=199 Identities=15% Similarity=0.193 Sum_probs=154.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++||+..|+. +++ |++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|+|++.
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~- 69 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITG- 69 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCC-
Confidence 68999999999986 566 555999999999999999999999999999999999 999999999999973
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC-CCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~~ 231 (350)
...+...+..++|++|..+.|..+ +|.+|+..+....+. +...+..++++.+.+= |.+
T Consensus 70 --~p~~~r~r~Gi~~VPegR~iF~~L----------TVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lke------- 128 (237)
T COG0410 70 --LPPHERARLGIAYVPEGRRIFPRL----------TVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKE------- 128 (237)
T ss_pred --CCHHHHHhCCeEeCcccccchhhC----------cHHHHHhhhhhcccc--cccccccHHHHHHHChhHHH-------
Confidence 223344455677777776665444 555555544332211 1111111444444442 222
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
..+++...|||||||.+|||||| |||+.+|.+ +.||++|.+ +
T Consensus 129 ----------r~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 129 ----------RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred ----------HhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 46889999999999999999999 999999754 779999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
.+.++|||.+| |++|+|+..|+.+++.+.|.
T Consensus 199 ~Al~iaDr~yv-le~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 199 FALEIADRGYV-LENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHHhhCEEEE-EeCCEEEEecCHHHHhcCHH
Confidence 88899999975 99999999999999987754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=276.02 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=140.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~- 69 (214)
T cd03292 1 IEFINVTKTYPNGT--AA---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLR- 69 (214)
T ss_pred CEEEEEEEEeCCCc--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccCC-
Confidence 47899999996433 34 677999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.......++.+++++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 128 (214)
T cd03292 70 GRAIPYLRRKIGVVFQDFRLLPDR----------NVYENVAFALEVT-GVPPREIRKRVPAALELVGLSH---------- 128 (214)
T ss_pred HHHHHHHHHheEEEecCchhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 000001122456666654433322 4445554433211 1123445567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+..
T Consensus 129 -------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 129 -------KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred -------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45889999999999999999999 999999874 799999999 56778
Q ss_pred cccEEEEEecCCeE
Q 018829 288 LTDRARIRTYLGEL 301 (350)
Q Consensus 288 ~aDri~v~l~~G~i 301 (350)
+||+++ +|++|++
T Consensus 202 ~~d~i~-~l~~G~~ 214 (214)
T cd03292 202 TRHRVI-ALERGKL 214 (214)
T ss_pred hCCEEE-EEeCCcC
Confidence 899996 5999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=315.46 Aligned_cols=234 Identities=11% Similarity=0.143 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEc
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 113 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvG 113 (350)
.|......+....|+.++++.+++.... ....++++||+|+|+......+ |+|+||+|++||.++|+|
T Consensus 297 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i---L~~inl~i~~Ge~i~IvG 373 (576)
T TIGR02204 297 VWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA---LDGLNLTVRPGETVALVG 373 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc---ccceeEEecCCCEEEEEC
Confidence 4666677777888999999865542110 1235999999999964321123 677999999999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhh
Q 018829 114 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 193 (350)
Q Consensus 114 pnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~ 193 (350)
|||||||||+++|+|+++ |++|+|.+||.++. .+...+.+...++++|++.++..++.+|
T Consensus 374 ~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 374 PSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLR---------------QLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred CCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHHhceEEccCCccccccHHHH
Confidence 999999999999999999 99999999999886 1222222333444555555555566677
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------
Q 018829 194 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--------- 264 (350)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--------- 264 (350)
+.++.. ...++++.++++.+++.+.+.+..++....+ .+....||||||||++||||+
T Consensus 434 i~~~~~-------~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i------~~~g~~LSgGq~Qrl~laRal~~~~~ilil 500 (576)
T TIGR02204 434 IRYGRP-------DATDEEVEAAARAAHAHEFISALPEGYDTYL------GERGVTLSGGQRQRIAIARAILKDAPILLL 500 (576)
T ss_pred HhcCCC-------CCCHHHHHHHHHHcCcHHHHHhCCCCCCcee------CCCCCcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 765432 1123557777888887654433333333322 334567999999999999999
Q ss_pred chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 265 NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 265 DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||++||+ ++|+|+||| ....+.||+++ +|++|++++.|+++++++.
T Consensus 501 DEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi-~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 501 DEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIV-VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred eCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEeeecHHHHHHc
Confidence 999999874 799999999 56667899995 6999999999999988653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=315.36 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 117 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGs 117 (350)
|..+...+.+..|+.++++.+++.... ..+.+++++++|+|+.+. ..+ |+++||+|++|++++|+|||||
T Consensus 277 ~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~-~~~---l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 277 FNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTD-HPA---LENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCC-Ccc---ccCeeEEECCCCEEEEECCCCC
Confidence 455556666777999999876543211 123589999999997532 134 6669999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhh
Q 018829 118 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 197 (350)
Q Consensus 118 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~ 197 (350)
|||||+++|+|+++ |++|+|.++|+++.. +...+.+...++++|++.++..++.+|+.++
T Consensus 353 GKSTLl~ll~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~ 412 (569)
T PRK10789 353 GKSTLLSLIQRHFD-----VSEGDIRFHDIPLTK---------------LQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412 (569)
T ss_pred CHHHHHHHHhcccC-----CCCCEEEECCEEHhh---------------CCHHHHHhheEEEccCCeeccccHHHHHhcC
Confidence 99999999999999 999999999998751 1122223333444555555555667777654
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhh
Q 018829 198 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 268 (350)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 268 (350)
.. ...++++.++++.+++.+.+.+.+++.... .++....||||||||++||||| ||||
T Consensus 413 ~~-------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~------~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 413 RP-------DATQQEIEHVARLASVHDDILRLPQGYDTE------VGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred CC-------CCCHHHHHHHHHHcCCHHHHHhCcCcccce------ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 32 112344556677777765443333344332 3445668999999999999999 9999
Q ss_pred cCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 269 LSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 269 s~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
++||. ++|+|+||| ....+.||+++ +|++|++++.|+++++++..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEIL-VMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEE-EEeCCEEEEecCHHHHHHcC
Confidence 99874 799999999 44556799995 59999999999999998653
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=281.82 Aligned_cols=197 Identities=13% Similarity=0.165 Sum_probs=148.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++++++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGK-I--QA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCC-c--ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 358999999999964 2 34 677999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHc-CCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~~~~~~~ 230 (350)
. ......++.++|++|+...+... ++.+|+.++... .......+.+.++++.+ ++.+
T Consensus 72 ~---~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~l~~------ 129 (237)
T PRK11614 72 W---QTAKIMREAVAIVPEGRRVFSRM----------TVEENLAMGGFF---AERDQFQERIKWVYELFPRLHE------ 129 (237)
T ss_pred C---CHHHHHHhCEEEeccCcccCCCC----------cHHHHHHHhhhc---cChhHHHHHHHHHHHHHHHHHH------
Confidence 1 00011123456777765444322 334444332211 01122344566667776 4655
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 130 -----------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred -----------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 34778999999999999999999 999999874 799999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+.++|||++ +|++|++++.|++++++..
T Consensus 199 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 199 QALKLADRGY-VLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhhCCEEE-EEeCCEEEeeCCHHHHhcC
Confidence 6889999996 5999999999999888643
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=278.76 Aligned_cols=194 Identities=13% Similarity=0.169 Sum_probs=148.8
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~~- 68 (236)
T TIGR03864 1 ALEVAGLSFAYGA-R--RA---LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRRA- 68 (236)
T ss_pred CEEEEeeEEEECC-E--EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcccC-
Confidence 5789999999964 2 34 667999999999999999999999999999999999 9999999999887411
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
. . . .++.++|++|+...+... ++.+|+.+..... ........+.+.++++.+|+.+
T Consensus 69 -~-~-~-~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 124 (236)
T TIGR03864 69 -P-R-A-ALARLGVVFQQPTLDLDL----------SVRQNLRYHAALH-GLSRAEARERIAALLARLGLAE--------- 124 (236)
T ss_pred -C-h-h-hhhhEEEeCCCCCCcccC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0 0 1 112456777765443222 3334443322111 1122344567888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
.+++.+.+||||||||++||||| |||+++||. +.|+|++|| +.+
T Consensus 125 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 125 --------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI 196 (236)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH
Confidence 45889999999999999999999 999999873 689999999 455
Q ss_pred HhcccEEEEEecCCeEeecCCccccccC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
. .||+++ +|++|++++.|++++++..
T Consensus 197 ~-~~d~i~-~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 197 E-ADDRLV-VLHRGRVLADGAAAELRGA 222 (236)
T ss_pred h-hCCEEE-EEeCCeEEEeCCHHHHHHH
Confidence 5 599996 5999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=284.57 Aligned_cols=218 Identities=16% Similarity=0.187 Sum_probs=158.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~-~--~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD-K--QA---LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC-e--eE---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 458999999999964 2 34 67799999999999999999999999999999998710000379999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .......++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 97 ~--~~~~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 159 (272)
T PRK14236 97 K--KVDVAELRRRVGMVFQRPNPFPK-----------SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK---- 159 (272)
T ss_pred c--ccCHHHHhccEEEEecCCccCcc-----------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH----
Confidence 0 00001113356677776544432 344444433221111112334566788889999864210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
+.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 160 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~ 230 (272)
T PRK14236 160 ---------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQA 230 (272)
T ss_pred ---------HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHH
Confidence 135788999999999999999999 999999874 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.++||+++ +|++|++++.|++++++..+.+.++..+
T Consensus 231 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 266 (272)
T PRK14236 231 ARVSDYTA-FMYMGKLVEYGDTDTLFTSPAKKQTEDY 266 (272)
T ss_pred HhhCCEEE-EEECCEEEecCCHHHHhcCCCcHHHHHH
Confidence 78999996 5999999999999999887776665443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=281.88 Aligned_cols=219 Identities=20% Similarity=0.226 Sum_probs=158.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|++ . .+ |+|+||+|++||+++|+||||||||||+++|+|+++.....+++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE-K--HA---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC-e--ee---eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 468999999999964 2 34 77799999999999999999999999999999997511000248999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ......++.++|++|+...+.. ++.+|+.++............++.+.++++.+++.+.+.
T Consensus 78 ~~--~~~~~~~~~i~~~~q~~~~~~~-----------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 140 (253)
T PRK14261 78 SG--ADVVALRRKIGMVFQRPNPFPK-----------SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK---- 140 (253)
T ss_pred cc--cchhhhhceEEEEecCCccCcc-----------cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH----
Confidence 10 0001112345677776544432 444555443321111112344566778888888854210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
+.+++.+.+||||||||++||||| |||+++||. ++|||++|| ..+
T Consensus 141 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~ 211 (253)
T PRK14261 141 ---------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA 211 (253)
T ss_pred ---------HHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH
Confidence 135788999999999999999999 999999874 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+||+++ +|++|++++.|++++++..+.++.++.++
T Consensus 212 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK14261 212 ARVSDYTG-FMYLGKLIEFDKTTQIFENPHEELTENYI 248 (253)
T ss_pred HhhCCEEE-EEECCEEEEcCCHHHHHhCCCcHHHHHHh
Confidence 78999996 59999999999999998877666655443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=344.57 Aligned_cols=231 Identities=11% Similarity=0.094 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHccchhccc----C-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 47 LVDQRRRDAVFREVLQSYDQLRT----R-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 47 ~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
......+++|+.++++.++|.+. . ..+.|+++||+|+|.++.+ ++ |+|+||+|++||.+||||+|
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~V---L~~is~~I~~GekVaIVGrS 1274 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP-PV---LHGLSFEISPSEKVGIVGRT 1274 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC-ce---ecceeEEEcCCCEEEEECCC
Confidence 34555667799999987765321 0 1236999999999965432 24 67799999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|.|+++ |++|+|.+||.|+. .+.+.+.|..+++|+|++.+|..++.+|+.
T Consensus 1275 GSGKSTLl~lL~rl~~-----p~~G~I~IDG~dI~---------------~i~l~~LR~~IsiVpQdp~LF~GTIreNLd 1334 (1622)
T PLN03130 1275 GAGKSSMLNALFRIVE-----LERGRILIDGCDIS---------------KFGLMDLRKVLGIIPQAPVLFSGTVRFNLD 1334 (1622)
T ss_pred CCCHHHHHHHHhCcCC-----CCCceEEECCEecc---------------cCCHHHHHhccEEECCCCccccccHHHHhC
Confidence 9999999999999999 99999999999987 233334444445555555555556666665
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
.+. +..++++.++++.+++.+.+...++++...| .+....||||||||++||||| ||
T Consensus 1335 ~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~V------ge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1335 PFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEV------SEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred cCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccc------cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 321 1234567788888888775544455555544 334568999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 316 (350)
||++||. ++|+|+||| -.....||||+ +|++|+|++.|+|+++++.+..
T Consensus 1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl-VLd~G~IvE~Gt~~eLl~~~~g 1465 (1622)
T PLN03130 1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL-VLDAGRVVEFDTPENLLSNEGS 1465 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCC
Confidence 9999873 899999999 34445699996 5999999999999999986543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=275.61 Aligned_cols=189 Identities=20% Similarity=0.203 Sum_probs=139.6
Q ss_pred EEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 75 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 75 l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|+++||+++|+++. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA---LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKLS 72 (218)
T ss_pred CeEeeeEEEecCCCcceeE---EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhcc
Confidence 57899999996421 0134 677999999999999999999999999999999999 99999999998875110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
........++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+|+.+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 132 (218)
T cd03255 73 EKELAAFRRRHIGFVFQSFNLLPDL----------TALENVELPLLLA-GVPKKERRERAEELLERVGLGD--------- 132 (218)
T ss_pred hhHHHHHHhhcEEEEeeccccCCCC----------cHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 0000011223456777765544332 3344444432211 1122334567888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 133 --------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 133 --------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred --------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 45889999999999999999999 999999873 689999999 455
Q ss_pred HhcccEEEEEecCCeE
Q 018829 286 LSLTDRARIRTYLGEL 301 (350)
Q Consensus 286 ~~~aDri~v~l~~G~i 301 (350)
. +||+++ +|++|++
T Consensus 205 ~-~~d~v~-~l~~G~i 218 (218)
T cd03255 205 E-YADRII-ELRDGKI 218 (218)
T ss_pred h-hhcEEE-EeeCCcC
Confidence 5 899996 5999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=281.60 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=145.5
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~-~--~i---l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGE-R--TV---LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA- 77 (257)
T ss_pred CCcEEEEEEEEEECC-c--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-
Confidence 467999999999974 2 34 677999999999999999999999999999999999 99999999997753
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .++.++|++|+...+... ++.+|+.++.. ...++++.++++.+++.+
T Consensus 78 -----~---~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~------- 125 (257)
T PRK11247 78 -----E---AREDTRLMFQDARLLPWK----------KVIDNVGLGLK-------GQWRDAALQALAAVGLAD------- 125 (257)
T ss_pred -----H---hhCceEEEecCccCCCCC----------cHHHHHHhccc-------chHHHHHHHHHHHcCChh-------
Confidence 0 122456777665433211 44555544321 112456788899999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 126 ----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 126 ----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999873 789999999 4
Q ss_pred HHHhcccEEEEEecCCeEeecCCcc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAK 308 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~ 308 (350)
.+..+||+++ +|++|++++.++.+
T Consensus 196 ~~~~~~d~i~-~l~~G~i~~~~~~~ 219 (257)
T PRK11247 196 EAVAMADRVL-LIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhCCEEE-EEECCEEEeecccc
Confidence 6778999996 59999999988764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=276.81 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=140.3
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+|+++||+++|+... ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA---LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceee---ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccc
Confidence 578999999996431 0134 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHH-HHHHHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNR-MRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~--~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~-i~~~l~~~gl~~~~~~~ 229 (350)
. .+.....++.++|++|+.. .+..+ ++.+|+.++.............+. +.++++.+++...
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 137 (228)
T cd03257 73 S-RRLRKIRRKEIQMVFQDPMSSLNPRM----------TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE---- 137 (228)
T ss_pred c-hhhHHHhhccEEEEecCchhhcCCcC----------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh----
Confidence 0 0000112335667777652 11111 334444433221111111122222 3578889998531
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 138 ------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 138 ------------VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred ------------HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g 305 (350)
+.+..+||+++ +|++|++++.|
T Consensus 206 ~~~~~~~~d~i~-~l~~G~i~~~g 228 (228)
T cd03257 206 LGVVAKIADRVA-VMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCeEE-EEeCCEEEecC
Confidence 56777999996 59999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=286.56 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=159.0
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 36 ~~~~l~i~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGD-E--QA---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECC-E--ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4568999999999964 2 34 6779999999999999999999999999999999861000148999999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.... .....++.++|++|+...+.. ++.+|+.++..... .. ....+++.++++.+++...+.
T Consensus 110 ~~~~--~~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~i~--- 171 (285)
T PRK14254 110 DADV--DPVALRRRIGMVFQKPNPFPK-----------SIYDNVAYGLKIQG-YD-GDIDERVEESLRRAALWDEVK--- 171 (285)
T ss_pred cccc--chHhhhccEEEEecCCccCcC-----------CHHHHHHHHHHHcC-Cc-HHHHHHHHHHHHHcCCCchhH---
Confidence 1100 001113356677776543322 33444443322111 11 234567888999999864210
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
..+++++.+||||||||++||||| |||+++||. +.|||++|| +.
T Consensus 172 ----------~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~ 241 (285)
T PRK14254 172 ----------DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ 241 (285)
T ss_pred ----------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 035788999999999999999999 999999874 679999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+|||++++|++|++++.|++++++..+.+++++.++
T Consensus 242 i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 280 (285)
T PRK14254 242 AARISDKTAVFLTGGELVEFDDTDKIFENPESQRVEDYI 280 (285)
T ss_pred HHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHHHHHHh
Confidence 778999975557999999999999988777666555443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=283.19 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=158.3
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|.++.
T Consensus 10 ~~~~l~i~nl~~~~~~---~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 10 KNIIISLQNVTISYGT---FEA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCceEEEEeEEEEECC---EEE---EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3468999999999974 245 6669999999999999999999999999999999861111148999999998864
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
... ..... .++.++|++|+.. ++..++.+|+.++..... .. ...++++.++++.+++...+
T Consensus 84 ~~~-~~~~~-~~~~i~~v~q~~~-----------l~~~tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l---- 144 (269)
T PRK14259 84 DPR-VDPVE-VRRRIGMVFQQPN-----------PFPKSIYENIAFGARING-YT-GDMDELVERSLRKAAVWDEC---- 144 (269)
T ss_pred ccc-CCHHH-HhhceEEEccCCc-----------cchhhHHHHHhhhhhhcC-Cc-HHHHHHHHHHHHHhCCcchh----
Confidence 100 00001 1223555555543 333356666655432211 11 23345667788888874311
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
.+.+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 145 ---------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 215 (269)
T PRK14259 145 ---------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ 215 (269)
T ss_pred ---------hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0145788999999999999999999 999999873 689999999 57
Q ss_pred HHhcccEEEEEecC-----------CeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYL-----------GELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~-----------G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+||+++ +|++ |++++.|++++++..+.++++..++
T Consensus 216 ~~~~~d~i~-~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 264 (269)
T PRK14259 216 AVRVSDMTA-FFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYI 264 (269)
T ss_pred HHHhcCEEE-EEeccccccccccccceEEEeCCHHHHHhCcCChHHHHHH
Confidence 889999996 5986 6799999999999888877655443
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=286.04 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=151.5
Q ss_pred EEEEEEEEEECCCce--EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 75 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 75 l~i~~l~~~y~~~~~--~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
|+++||+++|+.... .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA---LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCccccce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc
Confidence 889999999964220 134 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.........++.++|++|+... .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------- 137 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPES---------QLFEETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISES------- 137 (280)
T ss_pred ccccCHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000001112245666665310 112224455555433211 12233455667888999999742
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 138 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 138 ---------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV 208 (280)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 35889999999999999999999 999999873 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
..+||+++ +|++|++++.|++++++..
T Consensus 209 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 209 ANYADFVY-VLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHhcC
Confidence 78999996 5999999999999888764
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=264.95 Aligned_cols=210 Identities=16% Similarity=0.125 Sum_probs=174.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.|+++++++.|+.. .+ |.||+|+.++||.+.++||||+|||||+|.|+-+.- |.+|+..+-|....-..
T Consensus 2 sirv~~in~~yg~~---q~---lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s~ 70 (242)
T COG4161 2 SIQLNGINCFYGAH---QA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred ceEEcccccccccc---hh---eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEeccccccccc
Confidence 37899999999863 34 677999999999999999999999999999999988 99999999876443111
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.+. .-..++.+...++|+|...+.+. ++.+|+..++..-.+.++.+...++.++|+.+.+.+
T Consensus 71 ~~~---------~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-------- 133 (242)
T COG4161 71 TPS---------DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-------- 133 (242)
T ss_pred Ccc---------HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc--------
Confidence 111 12234556677888998888887 899998887766667777888899999999999999
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
+++++|-.|||||+||||||||| ||||++||+ |.|-+++|| +.+
T Consensus 134 ---------~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va 204 (242)
T COG4161 134 ---------YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA 204 (242)
T ss_pred ---------ccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH
Confidence 67999999999999999999999 999999986 999999999 678
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
.+.|.+++ .|++|+|++.|++. .|.+|..+..+.+
T Consensus 205 ~k~as~vv-yme~g~ive~g~a~-~ft~p~te~f~~y 239 (242)
T COG4161 205 RKTASRVV-YMENGHIVEQGDAS-CFTEPQTEAFKNY 239 (242)
T ss_pred HhhhhheE-eeecCeeEeecchh-hccCccHHHHHHH
Confidence 89999995 59999999999985 5666765544433
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=285.98 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=153.9
Q ss_pred CcEEEEEEEEEECCCc---eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 73 SLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~---~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++++|++++|+... ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i 74 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA---LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLDT 74 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEec
Confidence 5899999999996421 1234 666999999999999999999999999999999999 9999999999887
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
... ......++.++|++|+.... ++..++.+|+.++.... ..+..+.++++.++++.+|+.+
T Consensus 75 ~~~---~~~~~~~~~i~~v~q~~~~~---------~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~----- 136 (280)
T PRK13633 75 SDE---ENLWDIRNKAGMVFQNPDNQ---------IVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYE----- 136 (280)
T ss_pred ccc---ccHHHHhhheEEEecChhhh---------hccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHh-----
Confidence 410 00011123456666654211 12224455665543322 1233455677889999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+.++++.+||||||||++||||| |||+++||. |.|||++||
T Consensus 137 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 137 ------------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 56899999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+.. ||+++ +|++|+++..|++++++..
T Consensus 205 ~~~~~~-~d~v~-~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 205 MEEAVE-ADRII-VMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred hHHHhc-CCEEE-EEECCEEEEecCHHHHhcC
Confidence 45554 99996 5999999999999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=287.05 Aligned_cols=201 Identities=14% Similarity=0.196 Sum_probs=153.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc---cEEEECCEe
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 148 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~ 148 (350)
..+|+++|++++|++.. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+
T Consensus 3 ~~~l~i~~l~~~~~~~~-~~~---l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSK-KPA---LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred CceEEEEEEEEEcCCCC-ccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 35799999999996432 134 677999999999999999999999999999999999 887 899999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 149 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 149 i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
+.... ... .++.++|++|+... .++..++.+|+.++.... ....++..+++.++++.+++.+
T Consensus 74 ~~~~~---~~~-~~~~ig~v~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---- 135 (282)
T PRK13640 74 LTAKT---VWD-IREKVGIVFQNPDN---------QFVGATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLD---- 135 (282)
T ss_pred CCcCC---HHH-HHhheEEEEECHHH---------hhccCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChh----
Confidence 75100 000 12244566655421 111225556665543221 2233455677889999999987
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH 282 (350)
+.++++.+|||||+||++||||| |||+++||. |+|||++||
T Consensus 136 -------------~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 136 -------------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56899999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+.+ ..||+++ +|++|++++.|++++++..+
T Consensus 203 ~~~~~-~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 203 DIDEA-NMADQVL-VLDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred CHHHH-HhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 455 5799996 59999999999999887654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=283.99 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=152.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~l~i~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-SFT---LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAITD 75 (269)
T ss_pred CceEEEEEEEEEcCCCC-Ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 46899999999997432 124 677999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .... .++.++|++|+.. .+.. .++.+|+.++.... ........+++.++++.+++.+
T Consensus 76 ~---~~~~-~~~~i~~v~q~~~~~~~~----------~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 134 (269)
T PRK13648 76 D---NFEK-LRKHIGIVFQNPDNQFVG----------SIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLE------ 134 (269)
T ss_pred C---CHHH-HHhheeEEEeChHHhccc----------ccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 0 0011 1234566666642 2211 13344444432211 1123345567888999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 135 -----------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 135 -----------RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+.+. .|||++ +|++|++++.|++++++..+
T Consensus 204 ~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 204 SEAM-EADHVI-VMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred hHHh-cCCEEE-EEECCEEEEecCHHHHhcCH
Confidence 4555 499996 59999999999998886653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=284.66 Aligned_cols=200 Identities=14% Similarity=0.215 Sum_probs=152.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|+++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~l~~~nl~~~~~~~~-~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-NNA---LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITISK 75 (271)
T ss_pred ceEEEEEeEEEEcCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCc
Confidence 46899999999996322 134 677999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .... .++.++|++|+.. .+ ...++.+|+.++.... .......++.+.++++.+++.+
T Consensus 76 ~---~~~~-~~~~i~~v~q~~~~~~----------~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 134 (271)
T PRK13632 76 E---NLKE-IRKKIGIIFQNPDNQF----------IGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMED------ 134 (271)
T ss_pred C---CHHH-HhcceEEEEeCHHHhc----------CcccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHH------
Confidence 0 0001 1234566666642 12 1224555555443211 1223445567888999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++.+.+||||||||++||||| |||+++||. ++|||++||
T Consensus 135 -----------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 135 -----------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 45899999999999999999999 999999874 489999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+.+ ..||+++ +|++|+++..|++++++..+
T Consensus 204 ~~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 204 DEA-ILADKVI-VFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hHH-hhCCEEE-EEECCEEEEecCHHHHhcCH
Confidence 455 4799996 59999999999988876654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=285.83 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=153.9
Q ss_pred CcEEEEEEEEEECCCce--EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 73 SLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~--~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..|+++|++++|+.... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 46899999999964320 124 777999999999999999999999999999999999 99999999998874
Q ss_pred CCc-cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTY-FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~-~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
... ........++.++|++|+... .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~---- 142 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEY---------QLFQETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPED---- 142 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcch---------hhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 100 000001112245666665321 122235666666543321 12233445667888999999521
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+.++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 143 ------------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 143 ------------YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+.+.++||+++ +|++|++++.|++++++..+
T Consensus 211 ~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 211 MDQVLRIADEVI-VMHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 56778999996 59999999999998876643
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=274.39 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=138.3
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
+++|++++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~~~--~---l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---- 66 (205)
T cd03226 1 RIENISFSYKKGTE--I---LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIKA---- 66 (205)
T ss_pred CcccEEEEeCCcCc--e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhhh----
Confidence 47899999964232 3 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
...++.++|++|+... .++..++.+|+.++..... ...+++.++++.+++.+
T Consensus 67 ---~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~----------- 118 (205)
T cd03226 67 ---KERRKSIGYVMQDVDY---------QLFTDSVREELLLGLKELD-----AGNEQAETVLKDLDLYA----------- 118 (205)
T ss_pred ---HHhhcceEEEecChhh---------hhhhccHHHHHhhhhhhcC-----ccHHHHHHHHHHcCCch-----------
Confidence 1112245666665321 1122355666655432111 12356788999999987
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHhc
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~~ 288 (350)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+..+
T Consensus 119 ------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 119 ------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred ------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 45889999999999999999999 999999874 789999999 567789
Q ss_pred ccEEEEEecCCeEe
Q 018829 289 TDRARIRTYLGELL 302 (350)
Q Consensus 289 aDri~v~l~~G~iv 302 (350)
||+++ +|++|+++
T Consensus 193 ~d~i~-~l~~G~iv 205 (205)
T cd03226 193 CDRVL-LLANGAIV 205 (205)
T ss_pred CCEEE-EEECCEEC
Confidence 99996 59999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=290.24 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=154.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|++ ..+ |+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~---~~~---l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~~- 69 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNA---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQN- 69 (301)
T ss_pred EEEEEEEEEEECC---EEE---EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccC-
Confidence 4899999999974 345 666999999999999999999999999999999999 9999999999987520
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ...++.++|++|+...+..+ +.+++.++. ... ..+..+..+++.++++.+|+.+
T Consensus 70 ---~-~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~-----------~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 125 (301)
T TIGR03522 70 ---P-KEVQRNIGYLPEHNPLYLDMYVREYLQFIA-----------GIY-GMKGQLLKQRVEEMIELVGLRP-------- 125 (301)
T ss_pred ---h-HHHHhceEEecCCCCCCCCCcHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 0 11133567777776555443 555544322 111 1223445567888999999988
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
..++++..||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 126 ---------EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred ---------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 45899999999999999999999 999999874 789999999 6788
Q ss_pred hcccEEEEEecCCeEeecCCcccccc
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++|||++ +|++|+++..|+++++..
T Consensus 197 ~~~d~i~-~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 197 AICDRVI-IINKGKIVADKKLDELSA 221 (301)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHHH
Confidence 9999996 599999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=283.89 Aligned_cols=219 Identities=16% Similarity=0.182 Sum_probs=157.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 22 ~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGED---HA---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 4689999999999742 24 77799999999999999999999999999999998511111589999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ......++.++|++|+...+. .++.+|+.++.......+....++.+.++++.+++...+
T Consensus 96 ~~--~~~~~~~~~i~~v~q~~~~~~-----------~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l----- 157 (271)
T PRK14238 96 KS--YSVEELRTNVGMVFQKPNPFP-----------KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL----- 157 (271)
T ss_pred cc--ccHHHHhhhEEEEecCCcccc-----------ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-----
Confidence 00 001111335667777654432 244455544332111111223345567777777653211
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
...+++++.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 158 --------~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i 229 (271)
T PRK14238 158 --------KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA 229 (271)
T ss_pred --------HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH
Confidence 0145788999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.++||+++ +|++|++++.|++++++..+.++++..++
T Consensus 230 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 266 (271)
T PRK14238 230 ARISDKTA-FFLNGYVNEYDDTDKIFSNPSDKRTEDYI 266 (271)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHcCCCCHHHHHHH
Confidence 78999996 59999999999999998887766654443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=284.34 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=152.1
Q ss_pred CCCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 70 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 70 ~~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
+..++|+++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 7 ~~~~~l~i~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 75 (265)
T PRK10575 7 HSDTTFALRNVSFRVPG-R--TL---LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPL 75 (265)
T ss_pred CCCceEEEeeEEEEECC-E--EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEeh
Confidence 34568999999999964 2 34 677999999999999999999999999999999999 9999999999887
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh-c--CCCcHHHHHHHHHHHHHcCCCCcc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSV 226 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~-~--~~~~~~~~~~i~~~l~~~gl~~~~ 226 (350)
... .... .++.++|++|+...+..+ ++.+|+.++.... . ........+++.++++.+++.+
T Consensus 76 ~~~---~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 139 (265)
T PRK10575 76 ESW---SSKA-FARKVAYLPQQLPAAEGM----------TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-- 139 (265)
T ss_pred hhC---CHHH-HhhheEEeccCCCCCCCc----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH--
Confidence 410 0111 122456666664333222 3444444332100 0 0112334566888999999976
Q ss_pred ccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEE
Q 018829 227 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 280 (350)
Q Consensus 227 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIii 280 (350)
..++++.+||||||||++||||| ||||++||. +.|||++
T Consensus 140 ---------------~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~ 204 (265)
T PRK10575 140 ---------------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204 (265)
T ss_pred ---------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999999 999999863 7899999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
|| +.+.++||+++ +|++|++++.|+++++..
T Consensus 205 sH~~~~i~~~~d~i~-~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 205 LHDINMAARYCDYLV-ALRGGEMIAQGTPAELMR 237 (265)
T ss_pred eCCHHHHHHhCCEEE-EEECCeEEEecCHHHhcC
Confidence 99 56778999996 599999999998887754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=281.75 Aligned_cols=210 Identities=16% Similarity=0.216 Sum_probs=153.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 3 QPLLSVSGLMMRFGG---LLA---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG 71 (255)
T ss_pred CceEEEeeEEEEECC---EEE---EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC
Confidence 357999999999964 234 677999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHH-Hhhhhhhhhhhc--CCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWI-MEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v-~~~v~~~~~~~~--~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
.. .....+..++|++|+...+..+ +.+|+.+..... ..++..+..... .....+..+.+.++++.+|+.+
T Consensus 72 ~~---~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 145 (255)
T PRK11300 72 LP---GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE--- 145 (255)
T ss_pred CC---HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh---
Confidence 10 0011122456677776655443 555554321100 000000000000 0011233456778899999977
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiT 281 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|
T Consensus 146 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 146 --------------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred --------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 56899999999999999999999 999999873 68999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
| +.+..+||+++ +|++|++++.|++++++..
T Consensus 212 H~~~~~~~~~d~i~-~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 212 HDMKLVMGISDRIY-VVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred CCHHHHHHhCCEEE-EEECCeEEecCCHHHHhhC
Confidence 9 57778999996 5999999999999887653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=281.63 Aligned_cols=186 Identities=15% Similarity=0.186 Sum_probs=145.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++|++++|++ . .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 67 (255)
T PRK11248 1 MLQISHLYADYGG-K--PA---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-- 67 (255)
T ss_pred CEEEEEEEEEeCC-e--ee---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 5899999999964 2 34 677999999999999999999999999999999999 999999999998741
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
. ...++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 ----~---~~~~~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 120 (255)
T PRK11248 68 ----P---GAERGVVFQNEGLLPWR----------NVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG--------- 120 (255)
T ss_pred ----C---CCcEEEEeCCCccCCCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0 11246666665433221 3444444332211 1223345567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 121 --------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 121 --------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192 (255)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999873 789999999 577
Q ss_pred HhcccEEEEEec--CCeEeecCCcc
Q 018829 286 LSLTDRARIRTY--LGELLGIPPAK 308 (350)
Q Consensus 286 ~~~aDri~v~l~--~G~iv~~g~~~ 308 (350)
..+||+++ +|+ +|++++.++.+
T Consensus 193 ~~~~d~i~-~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 193 VFMATELV-LLSPGPGRVVERLPLN 216 (255)
T ss_pred HHhCCEEE-EEeCCCcEEEEEecCC
Confidence 88999996 588 59999987653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=277.07 Aligned_cols=204 Identities=16% Similarity=0.191 Sum_probs=153.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|+++.|++ .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~~i~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 69 (242)
T TIGR03411 1 PILYLEGLSVSFDG---FKA---LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTGL 69 (242)
T ss_pred CeEEEEeeEEEcCC---eEE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCCC
Confidence 36899999999964 245 666999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
......++.++|++|+...+..+ +.+|+.+.... ...+ +. ..........++++.++++.+|+.+
T Consensus 70 ---~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~l~~------- 135 (242)
T TIGR03411 70 ---PEHQIARAGIGRKFQKPTVFENLTVFENLELALPR-DKSV-FA--SLFFRLSAEEKDRIEEVLETIGLAD------- 135 (242)
T ss_pred ---CHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc-cccc-cc--ccccccHHHHHHHHHHHHHHcCCch-------
Confidence 01111223567777776655543 55554432110 0000 00 0000112345567888999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
..++.+..|||||+||++||||| ||||++||. ++|||++|| +.+
T Consensus 136 ----------~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 205 (242)
T TIGR03411 136 ----------EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV 205 (242)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 45889999999999999999999 999999874 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCcccccc
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
..+||+++ +|++|++++.|++++++.
T Consensus 206 ~~~~d~i~-~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 206 RSIADKVT-VLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhCCEEE-EEECCeEEeeCCHHHHhc
Confidence 78999996 599999999999888764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=312.30 Aligned_cols=202 Identities=15% Similarity=0.190 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC----------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEE
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLI 112 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIv 112 (350)
.|..+...+.+..|+.++++.+++.... ....++++||+|+|+++.++ |+|+||+|++||++||+
T Consensus 293 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~v-----L~~isl~i~~G~~vaIv 367 (529)
T TIGR02868 293 AAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPV-----LDGVSLDLPPGERVAIL 367 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCce-----eecceEEEcCCCEEEEE
Confidence 3555666677777999999876542110 12359999999999754434 77799999999999999
Q ss_pred cCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHh
Q 018829 113 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME 192 (350)
Q Consensus 113 GpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~ 192 (350)
||||||||||+++|+|+++ |++|+|.+||.++. .+ ..+.+...++|+|++.++..++.+
T Consensus 368 G~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~i~---------------~~-~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 368 GPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVSVS---------------SL-QDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred CCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh---------------hH-HHHHHhheEEEccCcccccccHHH
Confidence 9999999999999999999 99999999999987 34 455556667777777777778888
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--------
Q 018829 193 GVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------- 264 (350)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------- 264 (350)
|+.++.. +..++++.++++.+++++.+.+.++++...|++ ....||||||||++|||||
T Consensus 427 NI~~g~~-------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige------~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 427 NLRLGRP-------DATDEELWAALERVGLADWLRSLPDGLDTVLGE------GGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred HHhccCC-------CCCHHHHHHHHHHcCCHHHHHhCcccccchhcc------ccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8886532 223466788899999987665556666665544 3457999999999999999
Q ss_pred -chhhcCCCC---------------CceEEEEech
Q 018829 265 -NCPYLSFRD---------------DKPVVVVTHG 283 (350)
Q Consensus 265 -DEPts~Ld~---------------g~TVIiiTH~ 283 (350)
|||||+||. ++|+|+|||+
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999873 7999999994
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=275.25 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=150.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++||+++|+. . ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~---~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 65 (232)
T PRK10771 1 MLKLTDITWLYHH---L-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTT-- 65 (232)
T ss_pred CeEEEEEEEEECC---c-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCc--
Confidence 5789999999963 2 335999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....+..++|++|+...+... ++.+|+.++.... .......++++.++++.+|+.+
T Consensus 66 ----~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (232)
T PRK10771 66 ----TPPSRRPVSMLFQENNLFSHL----------TVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIED--------- 121 (232)
T ss_pred ----CChhhccEEEEecccccccCC----------cHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHH---------
Confidence 111123456666664433221 4445554432110 0112344567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||+ |||+++||. ++|||++|| +.+
T Consensus 122 --------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 122 --------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193 (232)
T ss_pred --------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 56899999999999999999999 999999873 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.++||+++ +|++|++++.|++++++..+
T Consensus 194 ~~~~d~i~-~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 194 ARIAPRSL-VVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHhCh
Confidence 78999996 59999999999998887654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=311.36 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 117 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGs 117 (350)
.|..+...+....|+.++++.+++.... ....++++|++|+|+++. .++ |+|+||+|++|++++|+|||||
T Consensus 280 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~~~~~i~~G~~~~ivG~sGs 355 (544)
T TIGR01842 280 GWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGK-KPT---LRGISFRLQAGEALAIIGPSGS 355 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEEcCCCEEEEECCCCC
Confidence 4555666677778999999776543211 123599999999996432 134 6669999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhh
Q 018829 118 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 197 (350)
Q Consensus 118 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~ 197 (350)
|||||+++|+|+++ |++|+|.++|.++... .. ...++.+++++|++.. +..++.+|+.++
T Consensus 356 GKSTL~~ll~g~~~-----~~~G~i~~~g~~i~~~---~~-~~~~~~i~~v~q~~~l-----------f~~ti~~Ni~~~ 415 (544)
T TIGR01842 356 GKSTLARLIVGIWP-----PTSGSVRLDGADLKQW---DR-ETFGKHIGYLPQDVEL-----------FPGTVAENIARF 415 (544)
T ss_pred CHHHHHHHHhCCCC-----CCCceEEECCEehhhC---CH-HHHhhheEEecCCccc-----------ccccHHHHHhcc
Confidence 99999999999999 9999999999987510 00 0112344555555444 444555666532
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhh
Q 018829 198 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 268 (350)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 268 (350)
.. . ..++++.++++.+++.+.+....++... ...+....||||||||++||||| ||||
T Consensus 416 ~~---~----~~~~~~~~~~~~~~~~~~i~~l~~gl~t------~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 416 GE---N----ADPEKIIEAAKLAGVHELILRLPDGYDT------VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred CC---C----CCHHHHHHHHHHhChHHHHHhCcccccc------ccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 11 0 1122333444444443321111111111 33566788999999999999999 9999
Q ss_pred cCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 269 LSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 269 s~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++||. ++|+|++|| -.....||+++ +|++|++++.|+++++..
T Consensus 483 s~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 483 SNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKIL-VLQDGRIARFGERDEVLA 542 (544)
T ss_pred cccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEeeCCHHHHhh
Confidence 99873 689999999 34557799995 599999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=273.96 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=142.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+. . ++ |+++||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~-~--~~---l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 66 (211)
T cd03264 1 LQLENLTKRYGK-K--RA---LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQ-- 66 (211)
T ss_pred CEEEEEEEEECC-E--EE---EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccccc--
Confidence 578999999964 2 35 66699999999 999999999999999999999999 9999999999876411
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
. ...++.+++++|+...+..+ ++.+|+.+..... .....+.++.+.++++.+++.+
T Consensus 67 -~--~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (211)
T cd03264 67 -P--QKLRRRIGYLPQEFGVYPNF----------TVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGD---------- 122 (211)
T ss_pred -h--HHHHhheEEecCCCcccccC----------CHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHH----------
Confidence 0 11123456666665544332 3444444332211 1122344567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHhc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~~ 288 (350)
.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+.++
T Consensus 123 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 123 -------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESL 195 (211)
T ss_pred -------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 45889999999999999999999 999999874 789999999 566789
Q ss_pred ccEEEEEecCCeEeecC
Q 018829 289 TDRARIRTYLGELLGIP 305 (350)
Q Consensus 289 aDri~v~l~~G~iv~~g 305 (350)
|||++ +|++|++++.|
T Consensus 196 ~d~i~-~l~~g~i~~~g 211 (211)
T cd03264 196 CNQVA-VLNKGKLVFEG 211 (211)
T ss_pred CCEEE-EEECCEEEecC
Confidence 99996 59999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=314.12 Aligned_cols=222 Identities=13% Similarity=0.188 Sum_probs=165.2
Q ss_pred CCCcEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 71 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++|+++|++++|+... ..++ |++|||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~ 80 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLL 80 (623)
T ss_pred CCceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEe
Confidence 356899999999996321 2345 666999999999999999999999999999999999 9999999999755
Q ss_pred CCC-----cc--ccc---cccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHH
Q 018829 150 DGT-----YF--LQE---YTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAH 218 (350)
Q Consensus 150 ~~~-----~~--~~~---~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~ 218 (350)
... .. ... ..+.+..+++++|++.. .+++ .++.+|+.++...+...+..+.++++.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~---------~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 151 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT---------SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchh---------hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 210 00 000 01112245555555310 1222 2556666655433222334456678899999
Q ss_pred HcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------
Q 018829 219 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 273 (350)
Q Consensus 219 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------- 273 (350)
.+|+.+.. ..+++++.+||||||||++||||| ||||++||.
T Consensus 152 ~~gL~~~~--------------~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~ 217 (623)
T PRK10261 152 QVRIPEAQ--------------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217 (623)
T ss_pred HCCCCChh--------------hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh
Confidence 99996410 045899999999999999999999 999999873
Q ss_pred -CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 -g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|+|||+||| +.+..+||||+ +|++|++++.|++++++..+.+++++.++.
T Consensus 218 ~g~tvi~itHdl~~~~~~adri~-vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~ 270 (623)
T PRK10261 218 MSMGVIFITHDMGVVAEIADRVL-VMYQGEAVETGSVEQIFHAPQHPYTRALLA 270 (623)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEE-EeeCCeecccCCHHHhhcCCCChhhhhhhh
Confidence 789999999 57789999996 599999999999999998887777655543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=313.71 Aligned_cols=231 Identities=11% Similarity=0.152 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
|......+.+..|+.++++.+++..+. ..+.++++||+|+|+++.. + |+++||+|++|++++|+|||
T Consensus 296 ~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~--~---l~~i~~~i~~G~~~~ivG~s 370 (585)
T TIGR01192 296 ITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQ--G---VFDVSFEAKAGQTVAIVGPT 370 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCc--c---ccceeEEEcCCCEEEEECCC
Confidence 445555666677999998765432111 1235999999999975433 3 66699999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|.++.. +...+.+...++++|+..++..++.+|+.
T Consensus 371 GsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 430 (585)
T TIGR01192 371 GAGKTTLINLLQRVYD-----PTVGQILIDGIDINT---------------VTRESLRKSIATVFQDAGLFNRSIRENIR 430 (585)
T ss_pred CCCHHHHHHHHccCCC-----CCCCEEEECCEEhhh---------------CCHHHHHhheEEEccCCccCcccHHHHHh
Confidence 9999999999999999 999999999998751 11112222233344444445556667776
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. .. .++++.++++.+++.+.+.+.++++.. ...+.+..||||||||++||||| ||
T Consensus 431 ~~~~---~~----~~~~~~~a~~~~~~~~~i~~l~~g~~t------~~~~~~~~LSgGq~qrl~lARall~~p~ililDE 497 (585)
T TIGR01192 431 LGRE---GA----TDEEVYEAAKAAAAHDFILKRSNGYDT------LVGERGNRLSGGERQRLAIARAILKNAPILVLDE 497 (585)
T ss_pred cCCC---CC----CHHHHHHHHHHhCcHHHHHhccccccc------hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 5432 11 123344445555544322111112221 34566778999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. ++|+|+||| -.....||+|+ +|++|++++.|+++++...
T Consensus 498 pts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 498 ATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVL-FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEE-EEECCEEEEECCHHHHHHC
Confidence 9999873 799999999 34446799995 5999999999999998764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=280.34 Aligned_cols=219 Identities=15% Similarity=0.179 Sum_probs=158.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|++ ..+ |+++||+|++||+++|+|+||||||||+++|+|+++.+....++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~---~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLSFYYNT---SKA---IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEEEEECC---eEe---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 457999999999974 234 66699999999999999999999999999999998711000048999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ......+..+++++|+...+. .++.+|+.++.......+.....+.+.++++.+++...+.
T Consensus 79 ~~--~~~~~~~~~i~~v~q~~~l~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 141 (259)
T PRK14260 79 PR--ININRLRRQIGMVFQRPNPFP-----------MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK---- 141 (259)
T ss_pred cc--cchHhhhhheEEEecccccCC-----------ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh----
Confidence 00 000111235677777654443 2344444433221111122344566778899998853210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
..+++++.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 142 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i 212 (259)
T PRK14260 142 ---------DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212 (259)
T ss_pred ---------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 145788999999999999999999 999999873 689999999 678
Q ss_pred HhcccEEEEEec-----CCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTY-----LGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~-----~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+||++++ |+ +|++++.|++++++..+..+++..++
T Consensus 213 ~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 254 (259)
T PRK14260 213 TRVSDFTAF-FSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYV 254 (259)
T ss_pred HHhcCeEEE-EeccCCCCceEEEeCCHHHHhcCCCChHHHHhh
Confidence 899999964 87 59999999999998877776655443
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.10 Aligned_cols=196 Identities=15% Similarity=0.204 Sum_probs=151.9
Q ss_pred EEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcccccc
Q 018829 79 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 158 (350)
Q Consensus 79 ~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 158 (350)
||+++|++ . . + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.........
T Consensus 4 ~l~~~~~~-~-~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~~~~~~ 70 (354)
T TIGR02142 4 RFSKRLGD-F-S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSRKGIFL 70 (354)
T ss_pred EEEEEECC-E-E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCcccccc
Confidence 89999964 2 2 4 5999999999999999999999999999999999 9999999999987411000001
Q ss_pred ccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecc
Q 018829 159 TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVD 238 (350)
Q Consensus 159 ~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~ 238 (350)
...++.+++++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~-------------- 123 (354)
T TIGR02142 71 PPEKRRIGYVFQEARLFPHL----------SVRGNLRYGMKRA---RPSERRISFERVIELLGIGH-------------- 123 (354)
T ss_pred chhhCCeEEEecCCccCCCC----------cHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChh--------------
Confidence 11133456666665444332 4455555443211 12334566888999999987
Q ss_pred hhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhccc
Q 018829 239 GLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTD 290 (350)
Q Consensus 239 ~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aD 290 (350)
++++++.+||||||||++||||| |||+++||. ++|||++|| +.+..+||
T Consensus 124 ---~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 124 ---LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred ---HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 56899999999999999999999 999999873 789999999 57778999
Q ss_pred EEEEEecCCeEeecCCccccccCCCCCC
Q 018829 291 RARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 291 ri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
+++ +|++|++++.|++++++..|...+
T Consensus 201 ~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 201 RVV-VLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EEE-EEeCCEEEEECCHHHHhcCcCccc
Confidence 996 599999999999999998887654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=280.24 Aligned_cols=211 Identities=15% Similarity=0.202 Sum_probs=156.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-----ccEEEECCE
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 147 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~ 147 (350)
++|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|+
T Consensus 6 ~~l~~~nl~~~~~~~---~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KI---LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-----LESEVRVEGRVEFFNQ 74 (261)
T ss_pred ceEEEeeEEEEeCCe---eE---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-----CCCCccccceEEECCE
Confidence 579999999999642 34 666999999999999999999999999999999998 74 899999998
Q ss_pred eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 148 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 148 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
++.... . .....++.+++++|+...+. .++.+|+.++.......+..+..+.+.++++.+++.+.+.
T Consensus 75 ~i~~~~-~-~~~~~~~~i~~~~q~~~l~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 141 (261)
T PRK14258 75 NIYERR-V-NLNRLRRQVSMVHPKPNLFP-----------MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141 (261)
T ss_pred Ehhccc-c-chHHhhccEEEEecCCccCc-----------ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh
Confidence 863100 0 00111234566666644332 2344444433211111122334566788899998854210
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiT 281 (350)
...++.+.+||||||||++||||| ||||++||. +.|||++|
T Consensus 142 -------------~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 142 -------------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred -------------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 035788999999999999999999 999999863 78999999
Q ss_pred c--hHHHhcccEEEEEecC-----CeEeecCCccccccCCCCCChHH
Q 018829 282 H--GDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~-----G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
| ..+.++||+++ +|++ |++++.|++++++..|..+....
T Consensus 209 H~~~~i~~~~d~i~-~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~ 254 (261)
T PRK14258 209 HNLHQVSRLSDFTA-FFKGNENRIGQLVEFGLTKKIFNSPHDSRTRE 254 (261)
T ss_pred CCHHHHHHhcCEEE-EEccCCCcCceEEEeCCHHHHHhCCCCHHHHH
Confidence 9 57789999996 5999 99999999999988877665543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=284.71 Aligned_cols=220 Identities=18% Similarity=0.206 Sum_probs=159.0
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++|++++|+. . .+ |+|+||+|++||+++|+||||||||||+++|+|+.+.....|++|+|.++|.++.
T Consensus 36 ~~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE-F--EA---VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECC-E--EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4568999999999964 2 34 6779999999999999999999999999999998531000138999999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
... . .....++.++|++|+...+.. ++.+|+.++.......+....++++.++++.+++...+.
T Consensus 110 ~~~-~-~~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--- 173 (286)
T PRK14275 110 GKF-T-DEVLLRKKIGMVFQKPNPFPK-----------SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS--- 173 (286)
T ss_pred hcc-c-chHHhhhcEEEECCCCCCCcc-----------CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---
Confidence 110 0 001123356677776544322 444555443221111112334566778888888753110
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
..+++.+..||||||||++||||| |||+++||. ++|||++|| +.
T Consensus 174 ----------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 174 ----------DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ----------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 035788999999999999999999 999999873 679999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 244 ~~~~~d~i~-~L~~G~i~~~g~~~~~~~~~~~~~~~~~~ 281 (286)
T PRK14275 244 ASRVSDYTM-FFYEGVLVEHAPTAQLFTNPKDRMTEDYI 281 (286)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence 778999996 59999999999999998877766655444
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=273.03 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=140.7
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|++ . ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 67 (208)
T cd03268 1 LKTNDLTKTYGK-K--RV---LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQKN-- 67 (208)
T ss_pred CEEEEEEEEECC-e--Ee---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccch--
Confidence 478999999964 2 34 666999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
...++.+++++|+...+... ++.+|+.++..... . .++++.++++.+++.+
T Consensus 68 ----~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~-~----~~~~~~~~l~~~~l~~---------- 118 (208)
T cd03268 68 ----IEALRRIGALIEAPGFYPNL----------TARENLRLLARLLG-I----RKKRIDEVLDVVGLKD---------- 118 (208)
T ss_pred ----HHHHhhEEEecCCCccCccC----------cHHHHHHHHHHhcC-C----cHHHHHHHHHHcCCHH----------
Confidence 11123456666664433222 44455544322111 1 2356778899999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 119 -------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred -------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 45888999999999999999999 999999874 789999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 018829 288 LTDRARIRTYLGELLGIP 305 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g 305 (350)
+||+++ +|++|++++.|
T Consensus 192 ~~d~v~-~l~~g~i~~~g 208 (208)
T cd03268 192 VADRIG-IINKGKLIEEG 208 (208)
T ss_pred hcCEEE-EEECCEEEecC
Confidence 999996 59999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=283.92 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=153.1
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+......+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~ 74 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAE 74 (277)
T ss_pred ceEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECCcC
Confidence 37999999999974321234 677999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.... .++.++|++|+... .++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 75 ---~~~~-~~~~i~~v~q~~~~---------~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (277)
T PRK13642 75 ---NVWN-LRRKIGMVFQNPDN---------QFVGATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLD-------- 132 (277)
T ss_pred ---CHHH-HhcceEEEEECHHH---------hhccCCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHh--------
Confidence 0011 12345666666421 011124455555433211 1223445567888999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 133 ---------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 55889999999999999999999 999999873 789999999 45
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+. .||+++ +|++|++++.|++++++..+
T Consensus 204 ~~-~~d~i~-~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 204 AA-SSDRIL-VMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HH-hCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 54 699996 59999999999999887654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=277.73 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=154.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-----ccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~~ 148 (350)
+++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQA---VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-----LTPGARVTGRILLDGQD 72 (252)
T ss_pred EEEEeeeEEEECC---EEe---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceeEEECCEE
Confidence 6899999999974 245 666999999999999999999999999999999997 64 8999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 149 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 149 i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
+.... .. ....++.++|++|+...+... ++.+|+.++.........+...+.+.++++.+++...+
T Consensus 73 ~~~~~-~~-~~~~~~~i~~~~q~~~~~~~~----------t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-- 138 (252)
T PRK14272 73 IYGPR-VD-PVAMRRRVGMVFQKPNPFPTM----------SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV-- 138 (252)
T ss_pred cccCc-cC-HHHhhceeEEEeccCccCcCC----------CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh--
Confidence 74100 00 011133567777765544322 33344433221111111233455666777777764311
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-- 282 (350)
...+++.+.+||||||||++||||| |||+++||. ++|||++||
T Consensus 139 -----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 207 (252)
T PRK14272 139 -----------KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207 (252)
T ss_pred -----------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 0134788999999999999999999 999999873 699999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
..+..+||+++ +|++|++++.|++++++..+.++.+..+
T Consensus 208 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 246 (252)
T PRK14272 208 HQAARVSDTTS-FFLVGDLVEHGPTDQLFTNPRDERTEAY 246 (252)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcCcHHHHHH
Confidence 56778999996 5999999999999999887766654443
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=282.20 Aligned_cols=217 Identities=17% Similarity=0.196 Sum_probs=158.5
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 18 ~~~~l~i~nl~~~~~~-~--~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 18 AAPAMAAVNLTLGFAG-K--TV---LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cCcEEEEeeEEEEECC-E--EE---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 4568999999999974 2 34 6669999999999999999999999999999999981111126999999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.. ......+..++|++|+...+...+. +|+.++..........+..+.+.++++.+++....
T Consensus 92 ~~---~~~~~~~~~i~~v~q~~~l~~~tv~-----------eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 153 (276)
T PRK14271 92 NY---RDVLEFRRRVGMLFQRPNPFPMSIM-----------DNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV---- 153 (276)
T ss_pred cc---chhHHHhhheEEeccCCccCCccHH-----------HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh----
Confidence 10 0001113355677776554432244 44443321111112234445667788999986421
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
.+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 154 ---------~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 224 (276)
T PRK14271 154 ---------KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQ 224 (276)
T ss_pred ---------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0134788999999999999999999 999999873 689999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
+..+|||++ +|++|++++.|++++++..+.++....
T Consensus 225 ~~~~~dri~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 260 (276)
T PRK14271 225 AARISDRAA-LFFDGRLVEEGPTEQLFSSPKHAETAR 260 (276)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCcCcHHHHH
Confidence 788999996 599999999999999988777655444
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=270.84 Aligned_cols=182 Identities=14% Similarity=0.155 Sum_probs=143.3
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|+++.|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (210)
T cd03269 1 LEVENVTKRFGR-V--TA---LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDI--- 66 (210)
T ss_pred CEEEEEEEEECC-E--EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchhH---
Confidence 578999999964 2 34 677999999999999999999999999999999999 999999999987641
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
..+..++|++|+...+... +.+++.+ ..... .......++++.++++.+++.+
T Consensus 67 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (210)
T cd03269 67 -----AARNRIGYLPEERGLYPKMKVIDQLVY-----------LAQLK-GLKKEEARRRIDEWLERLELSE--------- 120 (210)
T ss_pred -----HHHccEEEeccCCcCCcCCcHHHHHHH-----------HHHHc-CCChHHHHHHHHHHHHHcCChH---------
Confidence 1123567777776554432 4444433 21111 1122445567888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 121 --------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 121 --------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred --------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45888999999999999999999 999999874 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecC
Q 018829 287 SLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g 305 (350)
++||+++ +|++|++++.|
T Consensus 193 ~~~d~i~-~l~~g~i~~~~ 210 (210)
T cd03269 193 ELCDRVL-LLNKGRAVLYG 210 (210)
T ss_pred HhhhEEE-EEeCCEEEecC
Confidence 8999996 59999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=272.50 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=140.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (213)
T cd03262 1 IEIKNLHKSFGD-F--HV---LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDD-- 67 (213)
T ss_pred CEEEEEEEEECC-e--Ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc--
Confidence 478999999964 2 34 666999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.......++.++|++|+...+... ++.+|+.++............++++.++++.+++.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 127 (213)
T cd03262 68 KKNINELRQKVGMVFQQFNLFPHL----------TVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD---------- 127 (213)
T ss_pred chhHHHHHhcceEEecccccCCCC----------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------
Confidence 000111123567777776544322 333444332211111122345567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.+
T Consensus 128 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 128 -------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred -------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45889999999999999999999 999999873 789999999 56778
Q ss_pred cccEEEEEecCCeE
Q 018829 288 LTDRARIRTYLGEL 301 (350)
Q Consensus 288 ~aDri~v~l~~G~i 301 (350)
+||+++ +|++|++
T Consensus 201 ~~d~i~-~l~~g~i 213 (213)
T cd03262 201 VADRVI-FMDDGRI 213 (213)
T ss_pred hCCEEE-EEeCCcC
Confidence 999996 5999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=340.31 Aligned_cols=232 Identities=11% Similarity=0.015 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcc---cC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEE
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLR---TR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 111 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~---~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaI 111 (350)
.|........+++|+.++++.+++.. .. ..+.|+++||+++|+++.+ ++ |+|+||+|++||.+||
T Consensus 1242 ~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~v---L~~is~~I~~GekiaI 1317 (1522)
T TIGR00957 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LV---LRHINVTIHGGEKVGI 1317 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-cc---ccceeEEEcCCCEEEE
Confidence 46666677778889999998765532 11 1245999999999975432 34 6669999999999999
Q ss_pred EcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHH
Q 018829 112 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIM 191 (350)
Q Consensus 112 vGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~ 191 (350)
||+||||||||+++|.|+++ |++|+|.+||.|+. .+..++.|...++|+|++.+|..++.
T Consensus 1318 VGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~dI~---------------~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1318 VGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLNIA---------------KIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred ECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEEcc---------------ccCHHHHHhcCeEECCCCcccCccHH
Confidence 99999999999999999999 99999999999997 23344445555555566556666666
Q ss_pred hhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-------
Q 018829 192 EGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------- 264 (350)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------- 264 (350)
+|+.... ...++++.++++.+++.+.+...+++++..|++ ....||||||||++|||||
T Consensus 1378 ~NLdp~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e------~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1378 MNLDPFS--------QYSDEEVWWALELAHLKTFVSALPDKLDHECAE------GGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred HHcCccc--------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecC------CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 6664110 123456778889998887665555666665544 3457999999999999999
Q ss_pred --chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 265 --NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 265 --DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||+++|. ++|||+||| -.....||||+ +|++|+|++.|+|++++++
T Consensus 1444 iLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIl-Vld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1444 VLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI-VLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999999873 899999999 34556699996 5999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=280.31 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=150.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (255)
T PRK11231 2 TLRTENLTVGYGT-K--RI---LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPISMLS 70 (255)
T ss_pred EEEEEeEEEEECC-E--EE---EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhHHCC
Confidence 5899999999974 2 34 677999999999999999999999999999999999 99999999998864110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh---hcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~---~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
... .++.++|++|+...+..+ ++.+|+.++... ..........+++.++++.+++.+
T Consensus 71 ---~~~-~~~~i~~~~q~~~~~~~~----------tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 130 (255)
T PRK11231 71 ---SRQ-LARRLALLPQHHLTPEGI----------TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH------ 130 (255)
T ss_pred ---HHH-HhhheEEecccCCCCCCc----------cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH------
Confidence 001 122456777765443322 333444432110 001112334566788899999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
..++.+.+|||||+||++||||| |||+++||. ++|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 131 -----------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred -----------HHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 56889999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.+.++||+++ +|++|+++..|++++++.
T Consensus 200 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 200 QASRYCDHLV-VLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCEEE-EEECCeEEEEcCHHHhcC
Confidence 6778999996 599999999998887754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=280.92 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=156.9
Q ss_pred CcEEEEEEEEEECCC------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 73 SLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
++|+++||++.|+.+ ....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~~g 73 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTV---LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSWRG 73 (268)
T ss_pred ceEEEeceEEEecCCccccccCceee---EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECC
Confidence 579999999999731 01245 666999999999999999999999999999999999 9999999999
Q ss_pred EeCCCCccccccccCCCccceeeccccc-c-ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 147 SVGDGTYFLQEYTIPRGSNSFSLYDTRS-L-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 147 ~~i~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
.++.... .......++.++|++|+... + ... ++.+++.+................+.++++.+++..
T Consensus 74 ~~~~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~~----------t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 142 (268)
T PRK10419 74 EPLAKLN-RAQRKAFRRDIQMVFQDSISAVNPRK----------TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD 142 (268)
T ss_pred EeccccC-hhHHHHHHhcEEEEEcChhhccCCCC----------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh
Confidence 8875110 11101113356777777521 1 111 222333222111111123344567889999999973
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
. ..++.+..||||||||++||||| |||+++||. +.|+|
T Consensus 143 ~----------------~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii 206 (268)
T PRK10419 143 S----------------VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206 (268)
T ss_pred h----------------HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 2 35889999999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++|| +.+..+||+++ +|++|++++.|++++++. +.++++..++
T Consensus 207 ivsH~~~~i~~~~d~i~-~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 251 (268)
T PRK10419 207 FITHDLRLVERFCQRVM-VMDNGQIVETQPVGDKLT-FSSPAGRVLQ 251 (268)
T ss_pred EEECCHHHHHHhCCEEE-EEECCEEeeeCChhhccC-CCCHHHHHHH
Confidence 9999 57778999996 599999999999999874 5666654444
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=280.50 Aligned_cols=216 Identities=15% Similarity=0.171 Sum_probs=156.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+++|+|++......|++|+|.++|.++..
T Consensus 8 ~~~l~i~~v~~~~~~---~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGS---FLA---VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECC---EEE---eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 358999999999964 234 66699999999999999999999999999999998610000378999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .+. ...++.+++++|+...+ +.++.+|+.++..... . .....+++.++++.+++...+
T Consensus 82 ~~-~~~-~~~~~~i~~v~q~~~~~-----------~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l----- 141 (264)
T PRK14243 82 PD-VDP-VEVRRRIGMVFQKPNPF-----------PKSIYDNIAYGARING-Y-KGDMDELVERSLRQAALWDEV----- 141 (264)
T ss_pred cc-cCh-HHHhhhEEEEccCCccc-----------cccHHHHHHhhhhhcC-c-chHHHHHHHHHHHHhCchhhH-----
Confidence 00 000 11123456666654332 2345566655432211 1 123345566778888875321
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
...+++.+.+||||||||++||||| |||+++||. ++|||++|| +.+
T Consensus 142 --------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~ 213 (264)
T PRK14243 142 --------KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQA 213 (264)
T ss_pred --------HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 0135788999999999999999999 999999873 689999999 578
Q ss_pred HhcccEEEEEec---------CCeEeecCCccccccCCCCCChHHH
Q 018829 286 LSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 286 ~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
..+|||++ +|+ +|++++.|++++++..|.+++++.+
T Consensus 214 ~~~~d~v~-~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 258 (264)
T PRK14243 214 ARVSDMTA-FFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDY 258 (264)
T ss_pred HHhCCEEE-EEecccccccccCceEEEeCCHHHHHhCCCcHHHHHH
Confidence 89999996 488 8999999999999988877666544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=276.43 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=155.1
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....+++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGK-F--EA---LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECC-e--eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 457999999999974 2 34 66699999999999999999999999999999986411000258999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .......++.++|++|+...+...+.+| +.++............++.+.++++.+++...+
T Consensus 77 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~~n-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i----- 138 (252)
T PRK14255 77 P--NEDVVQLRKQVGMVFQQPNPFPFSIYEN-----------VIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV----- 138 (252)
T ss_pred c--cccHHHhcCeEEEEECCCccCCCcHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-----
Confidence 0 0011111235677777755443234444 433221111111223345567778888775311
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
....++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 139 --------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 139 --------KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred --------hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 0135788999999999999999999 999999874 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 320 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 320 (350)
..+||+++ +|++|++++.|++.+++..+.....+
T Consensus 211 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~ 244 (252)
T PRK14255 211 SRISDKTA-FFLTGNLIEFADTKQMFLNPKEKETE 244 (252)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHhcCCCChHHH
Confidence 78999996 59999999999999998887765543
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=286.69 Aligned_cols=243 Identities=20% Similarity=0.232 Sum_probs=170.5
Q ss_pred cccccCCC-CCCCccchhHHHHHHHHHHHHHHHHHccchhcccCCCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCC
Q 018829 28 PLLSMNSG-DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 106 (350)
Q Consensus 28 ~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~G 106 (350)
|-+...|| .||-+|+.|... +.. ..++|+++||+++|++ ..+ |+++||+|++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~------------------~~~--~~~~l~i~nl~~~~~~---~~i---L~~is~~i~~G 71 (305)
T PRK14264 18 PEVETTSGESDEQTRDEWTDY------------------EFD--GDAKLSVEDLDVYYGD---DHA---LKGVSMDIPEK 71 (305)
T ss_pred ccccccccchhhhhhhccccc------------------ccC--CCceEEEEEEEEEeCC---eee---eeeeEEEEcCC
Confidence 44444555 478899999332 211 2357999999999975 234 66699999999
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI 186 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~ 186 (350)
|+++|+||||||||||+++|+|+++.....|++|+|.++|.++... .......++.++|++|+...+...+.+|+
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~--~~~~~~~~~~i~~v~q~~~l~~~tv~enl--- 146 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD--GVNLVELRKRVGMVFQSPNPFPKSIRENI--- 146 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc--cccHHHHhhceEEEccCCccccccHHHHH---
Confidence 9999999999999999999999985110015899999999887410 00001112356677776544433344444
Q ss_pred HHHHHhhhhhhhhhhc-----------CCC-cHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 187 KLWIMEGVRHGELVIR-----------RSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 187 ~~~v~~~v~~~~~~~~-----------~~~-~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
.++..... ... ....++.+.++++.+++.+.+ .+.+++++.+|||||
T Consensus 147 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------------~~~~~~~~~~LSgGq 205 (305)
T PRK14264 147 --------SYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------------NDRLDDNALGLSGGQ 205 (305)
T ss_pred --------HhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------------hHHhcCccccCCHHH
Confidence 33221100 011 123456788889999885311 014578899999999
Q ss_pred HHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCcc
Q 018829 255 QYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 308 (350)
Q Consensus 255 rQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 308 (350)
|||++||||| |||+++||. ++|||++|| +.+..+||+++++|++|++++.|+++
T Consensus 206 ~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 206 QQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTD 285 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHH
Confidence 9999999999 999999873 689999999 57778999974458999999999999
Q ss_pred ccccCCCCCChHHH
Q 018829 309 QIFDIPESSDPENE 322 (350)
Q Consensus 309 ~l~~~~~~~~~~~~ 322 (350)
+++..+.++.+..+
T Consensus 286 ~~~~~~~~~~~~~~ 299 (305)
T PRK14264 286 KIFENPESQRVEDY 299 (305)
T ss_pred HHHhCcccHHHHHH
Confidence 98877666554443
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=281.97 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=151.3
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
..+|+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~---~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 73 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTV---AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQH 73 (265)
T ss_pred ccEEEEEEEEEEECC---EEE---eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhhh
Confidence 457999999999974 234 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhc---CCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
. ..... +..++|++|+...+... ++.+|+.++..... .......++++.++++.+++.+
T Consensus 74 ~---~~~~~-~~~i~~v~q~~~~~~~~----------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (265)
T PRK10253 74 Y---ASKEV-ARRIGLLAQNATTPGDI----------TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---- 135 (265)
T ss_pred C---CHHHH-hhheEEeeccCcCCCCC----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 0 00011 12456777775544322 33344433211000 0011334557788999999986
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH 282 (350)
..++.+.+||||||||++||||| ||||++||. +.|||++||
T Consensus 136 -------------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 136 -------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred -------------HhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45899999999999999999999 999999873 689999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+.+..+||+++ +|++|++++.|++++++.
T Consensus 203 ~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 203 DLNQACRYASHLI-ALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CHHHHHHhCCEEE-EEECCEEEEeCCHHHHhh
Confidence 56789999996 599999999999887754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=275.57 Aligned_cols=203 Identities=13% Similarity=0.069 Sum_probs=146.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc--CCCCCCCcccEEEECCEeCCCC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~---~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~~ 69 (243)
T TIGR01978 1 LKIKDLHVSVED---KEI---LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLEL 69 (243)
T ss_pred CeEeeEEEEECC---EEE---EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCCC
Confidence 578999999964 234 66699999999999999999999999999999994 7 8999999999987521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .....+..++|++|+...+..+ +.+++.+..... . ...........+..+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 135 (243)
T TIGR01978 70 E---PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR----R-SARGEEPLDLLDFLKLLKAKLALLGMDEE------ 135 (243)
T ss_pred C---HHHhhccceEeeeccccccCCcCHHHHHHHHHHHh----h-cccccccccHHHHHHHHHHHHHHcCCchh------
Confidence 0 0011122356777776554433 444443221100 0 00000001123345678889999999742
Q ss_pred eeeeecchhhhhccCCC-CCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
..++.+. +||||||||++||||| ||||++||. ++|||++|| +
T Consensus 136 ----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 136 ----------FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred ----------hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 3466776 5999999999999999 999999874 789999999 5
Q ss_pred HHHhc-ccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSL-TDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~-aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+..+ ||+++ +|++|++++.|+++++...
T Consensus 206 ~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 235 (243)
T TIGR01978 206 LLNYIKPDYVH-VLLDGRIVKSGDVELAKEL 235 (243)
T ss_pred HHHhhcCCeEE-EEeCCEEEEecCHHHhccc
Confidence 66677 89996 5999999999998765443
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=271.32 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=140.4
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++++||+++|+++. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV---LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKL 72 (221)
T ss_pred CEEEEeeeEEccCCCcceEe---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 478999999996421 1235 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.......+.++.++|++|+...+..+ ++.+|+.++.... ........+++.++++.+|+.+
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 133 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLLPDF----------TALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEH-------- 133 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 10000001123456777765444322 3344444322111 1122334567788999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 134 ---------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 134 ---------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 689999999 45
Q ss_pred HHhcccEEEEEecCCeEe
Q 018829 285 LLSLTDRARIRTYLGELL 302 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv 302 (350)
+ ..||+++ +|++|+++
T Consensus 205 ~-~~~d~v~-~l~~G~i~ 220 (221)
T TIGR02211 205 A-KKLDRVL-EMKDGQLF 220 (221)
T ss_pred H-hhcCEEE-EEeCCEec
Confidence 5 4589996 59999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=289.26 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=141.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.++... ... .++.++|++|+...+
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~----~~~-~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVRE----PRK-VRRSIGIVPQYASVD 78 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccC----HHH-HHhhcEEecCCCCCC
Confidence 666999999999999999999999999999999999 9999999999987510 011 133567777776555
Q ss_pred ccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 176 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 176 ~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
..+ +.+++.+ ..... ..+.....+++.++++.+++.+ ..++++.+|||||
T Consensus 79 ~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 129 (302)
T TIGR01188 79 EDLTGRENLEM-----------MGRLY-GLPKDEAEERAEELLELFELGE-----------------AADRPVGTYSGGM 129 (302)
T ss_pred CCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhCCchhhCCHHH
Confidence 443 4554433 21111 1223445667889999999987 4588999999999
Q ss_pred HHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCc
Q 018829 255 QYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 255 rQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
|||++||||| ||||++||+ |+|||++|| +++.++||+++ +|++|+++..|++
T Consensus 130 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~-~l~~G~i~~~g~~ 208 (302)
T TIGR01188 130 RRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIA-IIDHGRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE-EEECCEEEEECCH
Confidence 9999999999 999999874 799999999 67888999996 5999999999999
Q ss_pred cccccC
Q 018829 308 KQIFDI 313 (350)
Q Consensus 308 ~~l~~~ 313 (350)
+++...
T Consensus 209 ~~l~~~ 214 (302)
T TIGR01188 209 EELKRR 214 (302)
T ss_pred HHHHHh
Confidence 887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=271.77 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=164.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++||+++|+. ..+ |+++|++|++|.+++|+||||||||||+.+++++.+ +++|+|+++|.++..
T Consensus 1 MI~i~nv~K~y~~---~~v---l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~-- 67 (252)
T COG4604 1 MITIENVSKSYGT---KVV---LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTS-- 67 (252)
T ss_pred CeeehhhhHhhCC---EEe---eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeeccc--
Confidence 6899999999975 344 566999999999999999999999999999999999 999999999999872
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhh-hhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~-~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+.-++.........|...+... +|.+-+.||- ..+++...++++..+.++++.++|.+
T Consensus 68 -------------~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~------- 127 (252)
T COG4604 68 -------------TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED------- 127 (252)
T ss_pred -------------CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-------
Confidence 2222322222333343333333 8888888873 45566677889999999999999998
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+.+++..+||||||||.-||+.| |||..+||- |+||++|-| +
T Consensus 128 ----------l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 128 ----------LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred ----------hHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 67999999999999999999999 999999872 999999999 7
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
++..++|+|+ -|++|+++..|++++++...
T Consensus 198 fAS~YsD~IV-AlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 198 FASCYSDHIV-ALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred HHHhhhhhee-eecCCEEEecCCHHHhcCHH
Confidence 9999999995 59999999999999998753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=268.17 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=141.3
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++ . ..++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~---~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~~-- 65 (211)
T cd03298 1 VRLDKIRFSYGE---Q-----PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTAA-- 65 (211)
T ss_pred CEEEeEEEEeCC---E-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCcC--
Confidence 478999999964 2 125999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
...++.++|++|+...+... ++.+|+.++...... .....++++.++++.+++.+
T Consensus 66 ----~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---------- 120 (211)
T cd03298 66 ----PPADRPVSMLFQENNLFAHL----------TVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAG---------- 120 (211)
T ss_pred ----CHhHccEEEEecccccCCCC----------cHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHH----------
Confidence 11123456777765444322 444555443221001 11234567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| |||+++||. ++|||++|| +.+.
T Consensus 121 -------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 121 -------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred -------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecC
Q 018829 287 SLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g 305 (350)
.+||+++ +|++|++++.|
T Consensus 194 ~~~d~i~-~l~~G~i~~~~ 211 (211)
T cd03298 194 RLAQRVV-FLDNGRIAAQG 211 (211)
T ss_pred hhhCEEE-EEECCEEeecC
Confidence 8999996 59999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=271.73 Aligned_cols=183 Identities=20% Similarity=0.225 Sum_probs=136.7
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
+++|++++|+... .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~~~~l~~~~~~~~-~~i---l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~--- 68 (211)
T cd03225 1 ELKNLSFSYPDGA-RPA---LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLTKL--- 68 (211)
T ss_pred CceeEEEecCCCC-eee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcccC---
Confidence 4789999996421 134 666999999999999999999999999999999999 9999999999887511
Q ss_pred cccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 156 QEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~-~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.. ...++.++|++|+... +. ..++.+|+.++.... .......++++.++++.+++.+
T Consensus 69 ~~-~~~~~~i~~~~q~~~~~~~----------~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 126 (211)
T cd03225 69 SL-KELRRKVGLVFQNPDDQFF----------GPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEG---------- 126 (211)
T ss_pred CH-HHHHhhceEEecChhhhcC----------CCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHh----------
Confidence 00 0112345666666421 11 123444444332211 1122344567888999999986
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
.+++++..||||||||++||||| ||||++||. ++|||++|| ..+..
T Consensus 127 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 127 -------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred -------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45889999999999999999999 999999874 789999999 56778
Q ss_pred cccEEEEEecCCe
Q 018829 288 LTDRARIRTYLGE 300 (350)
Q Consensus 288 ~aDri~v~l~~G~ 300 (350)
+||+++ +|++|+
T Consensus 200 ~~d~i~-~l~~G~ 211 (211)
T cd03225 200 LADRVI-VLEDGK 211 (211)
T ss_pred hCCEEE-EEeCCC
Confidence 899996 598874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=279.22 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=149.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++|++++|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~~~- 69 (258)
T PRK13548 2 MLEARNLSVRLGG-R--TL---LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLADW- 69 (258)
T ss_pred eEEEEeEEEEeCC-e--ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcccC-
Confidence 6899999999974 2 34 677999999999999999999999999999999999 9999999999886410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.... .++.++|++|+...+.. .++.+|+.++..... ......++.+.++++.+++.+
T Consensus 70 --~~~~-~~~~i~~~~q~~~~~~~----------~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~--------- 126 (258)
T PRK13548 70 --SPAE-LARRRAVLPQHSSLSFP----------FTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAH--------- 126 (258)
T ss_pred --CHHH-hhhheEEEccCCcCCCC----------CCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHh---------
Confidence 0001 12245666666443221 134455544322111 112334556788999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------------chhhcCCCC-----------------CceEEEEe
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVVVT 281 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPts~Ld~-----------------g~TVIiiT 281 (350)
..++.+.+||||||||++||||| ||||++||. +.|||++|
T Consensus 127 --------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 198 (258)
T PRK13548 127 --------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL 198 (258)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45889999999999999999986 999999863 68999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
| +.+..+||+++ +|++|++++.|++++++.
T Consensus 199 H~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 199 HDLNLAARYADRIV-LLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCHHHHHHhcCEEE-EEECCEEEeeCCHHHHhC
Confidence 9 56778999996 599999999998887764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=271.27 Aligned_cols=195 Identities=18% Similarity=0.176 Sum_probs=144.4
Q ss_pred CCcEEEEEEEEEECCCce-EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 72 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~-~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++|+++|++++|+.+.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~ 75 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI---LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLH 75 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE---EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcc
Confidence 368999999999974321 234 666999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...........++.+++++|+...+... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 138 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTL----------NALENVELPALLR-GESSRQSRNGAKALLEQLGLGK------ 138 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCc----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh------
Confidence 2100000011123467777765544332 2334433322111 1122445677889999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++.+..||||||||++||||| ||||++||. +.|||++||
T Consensus 139 -----------~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 139 -----------RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred -----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEecCCeEeec
Q 018829 283 GDLLSLTDRARIRTYLGELLGI 304 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~ 304 (350)
+.+ ..||+++ +|++|++++.
T Consensus 208 ~~~-~~~d~i~-~l~~g~i~~~ 227 (228)
T PRK10584 208 QLA-ARCDRRL-RLVNGQLQEE 227 (228)
T ss_pred HHH-HhCCEEE-EEECCEEEec
Confidence 444 5599996 5999999754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=303.41 Aligned_cols=220 Identities=12% Similarity=0.119 Sum_probs=157.3
Q ss_pred CCcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 72 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.++++++|++++|+.+ ....+ |+++||+|++||++||+||||||||||+|+|+|+++.....|++|+|.++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~---l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV---VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceee---eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 3589999999999632 11245 6669999999999999999999999999999999981111127999999999875
Q ss_pred CCccccccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~-~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.....+.....++.++|++|+... +.. ..++.+++.+........+.....+++.++++.+|+.+..
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--- 147 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNP---------LHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--- 147 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCc---------hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH---
Confidence 211000011122356777776431 110 1133333332211111123345667889999999997510
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
..+++++.+||||||||++||||| ||||++||+ ++|||+|||
T Consensus 148 -----------~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 148 -----------KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred -----------HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 024889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
+.+..+||||+ +|++|++++.|++++++..+....
T Consensus 217 ~~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~~~~~ 252 (529)
T PRK15134 217 LSIVRKLADRVA-VMQNGRCVEQNRAATLFSAPTHPY 252 (529)
T ss_pred HHHHHHhcCEEE-EEECCEEEEeCCHHHHhhCCCCHH
Confidence 57778999996 599999999999998887655433
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=278.49 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=148.2
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|+++.|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 69 (256)
T TIGR03873 2 LRLSRVSWSAGG-R--LI---VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLHGLS- 69 (256)
T ss_pred ceEEeEEEEECC-E--EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcccCC-
Confidence 689999999964 2 34 677999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh---cCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
... .++.++|++|+...+... ++.+|+.++.... .........+++.++++.+++.+
T Consensus 70 --~~~-~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 129 (256)
T TIGR03873 70 --RRA-RARRVALVEQDSDTAVPL----------TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH------- 129 (256)
T ss_pred --HHH-HhhheEEecccCccCCCC----------CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-------
Confidence 001 122456777665332222 3334443321100 01112234457888999999976
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
..++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 130 ----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (256)
T TIGR03873 130 ----------LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199 (256)
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56889999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCcccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+..+||+++ +|++|++++.|++++++.
T Consensus 200 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 200 AASYCDHVV-VLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhCCEEE-EEeCCCEEEecCHHHhhC
Confidence 778999996 599999999999887654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=279.66 Aligned_cols=218 Identities=15% Similarity=0.179 Sum_probs=156.8
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~-~--~~---l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG-F--LA---LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCC-e--EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 3468999999999974 2 34 6669999999999999999999999999999999861100026899999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
... . .....++.++|++|+...+. .++.+|+.++..... . ....++.+.++++.+++...+.
T Consensus 91 ~~~-~-~~~~~~~~i~~v~q~~~l~~-----------~tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l~--- 152 (274)
T PRK14265 91 DSQ-I-NSVKLRRQVGMVFQRPNPFP-----------KSIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEVK--- 152 (274)
T ss_pred ccc-c-hhHHHhhcEEEEccCCcccc-----------ccHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhhH---
Confidence 100 0 00111235566666644332 244455544322111 1 1123345667788888753210
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
..+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 153 ----------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 222 (274)
T PRK14265 153 ----------DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ 222 (274)
T ss_pred ----------HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 135788999999999999999999 999999873 689999999 57
Q ss_pred HHhcccEEEEEec---------CCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+.++||+++ +|+ +|++++.|++++++..+.++.++.++
T Consensus 223 ~~~~~d~i~-~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~ 269 (274)
T PRK14265 223 ASRVADWTA-FFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYI 269 (274)
T ss_pred HHHhCCEEE-EEecccccccccCceEEEeCCHHHHHhCCCCHHHHHHh
Confidence 789999996 487 89999999999999888776655443
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=275.50 Aligned_cols=205 Identities=15% Similarity=0.165 Sum_probs=154.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC----cccEEEECCEeC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 149 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p----~~G~I~i~G~~i 149 (350)
+|+++|++++| + . .+ |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-~-~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA-A-Q--PL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe-c-c--ce---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 68999999999 3 2 24 667999999999999999999999999999999999 8 999999999987
Q ss_pred CCCccccccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
. .....++.++|++|+... +... .++.+++.+...... . ...++++.++++.+++.+..
T Consensus 72 ~------~~~~~~~~i~~v~q~~~~~~~~~---------~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~~-- 131 (254)
T PRK10418 72 A------PCALRGRKIATIMQNPRSAFNPL---------HTMHTHARETCLALG-K--PADDATLTAALEAVGLENAA-- 131 (254)
T ss_pred c------ccccccceEEEEecCCccccCcc---------ccHHHHHHHHHHHcC-C--ChHHHHHHHHHHHcCCCChh--
Confidence 4 112223357788887532 2110 022223222111111 1 12236788899999997620
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH 282 (350)
+++++.+.+||||||||++||||| ||||++||. |.|||++||
T Consensus 132 ------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 132 ------------RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred ------------hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 134788999999999999999999 999999873 689999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+.+..+||+++ +|++|++++.|++++++..+.++..+.+.
T Consensus 200 ~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
T PRK10418 200 DMGVVARLADDVA-VMSHGRIVEQGDVETLFNAPKHAVTRSLV 241 (254)
T ss_pred CHHHHHHhCCEEE-EEECCEEEEecCHHHHhhCCCCHHHHHHH
Confidence 56778999996 59999999999999998877655544333
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=271.51 Aligned_cols=203 Identities=15% Similarity=0.224 Sum_probs=157.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+. . ++ |+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~--- 66 (237)
T TIGR00968 1 IEIANISKRFGS-F--QA---LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATR--- 66 (237)
T ss_pred CEEEEEEEEECC-e--ee---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 478999999974 2 34 677999999999999999999999999999999999 999999999988751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.++|++++...+..+ ++.+|+.+..... ........+.+.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~----------t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (237)
T TIGR00968 67 ---VHARDRKIGFVFQHYALFKHL----------TVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEG---------- 122 (237)
T ss_pred ---CChhhcCEEEEecChhhccCC----------cHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHh----------
Confidence 111133556777665444332 3334443332211 1122334567788999999976
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
+.++.+..||+||+||++||||| |||+++||. ++|||++|| +.+.
T Consensus 123 -------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 123 -------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAM 195 (237)
T ss_pred -------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 56889999999999999999999 999999873 689999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++||+++ +|++|++++.|++++++..+..+++..+.
T Consensus 196 ~~~d~i~-~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
T TIGR00968 196 EVADRIV-VMSNGKIEQIGSPDEVYDHPANPFVMSFL 231 (237)
T ss_pred hhcCEEE-EEECCEEEEecCHHHHHcCCCcHHHHHhc
Confidence 8999996 59999999999999998776666554444
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.38 Aligned_cols=206 Identities=12% Similarity=0.073 Sum_probs=162.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.|+++||+|+|+++.+ .+ |+|+||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.
T Consensus 1308 ~I~f~nVsf~Y~~~~~-~v---L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~--- 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP-LV---LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIG--- 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCC-ce---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc---
Confidence 5999999999976542 24 677999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.+...+.+..+++|+|++.+|..++.+||.... +..++++.++++.+++.+.+....+++
T Consensus 1376 ------------~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--------~~sdeeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1376 ------------AYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--------EASSAEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred ------------cCCHHHHHhcceEECCCCccccccHHHHhCccc--------CCCHHHHHHHHHHCCChHHHhhCcccc
Confidence 233344445555556666666666667764211 123467888999999987665555566
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh----------chhhcCCCC---------------CceEEEEec-hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------DEPts~Ld~---------------g~TVIiiTH-~~~~~ 287 (350)
...|++ ....||||||||++||||| |||||+||. ++|||+||| -....
T Consensus 1436 dt~vge------~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1436 DSRVLE------GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred cccccC------CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 654443 3557999999999999999 999999873 899999999 45556
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
.||+|+ +|++|+|++.|+|++++..+...+
T Consensus 1510 ~~DrIl-VLd~G~VvE~Gt~~eLl~~~~~~f 1539 (1560)
T PTZ00243 1510 QYDKII-VMDHGAVAEMGSPRELVMNRQSIF 1539 (1560)
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCCCHH
Confidence 799995 599999999999999988654433
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=270.08 Aligned_cols=199 Identities=15% Similarity=0.177 Sum_probs=154.7
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+. . .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~-~--~i---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~-- 67 (232)
T cd03300 1 IELENVSKFYGG-F--VA---LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITNL-- 67 (232)
T ss_pred CEEEeEEEEeCC-e--ee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcC--
Confidence 478999999974 2 34 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
...++.+++++|+...+.++ +.+| +.++.... ........+++.++++.+++.+
T Consensus 68 ----~~~~~~i~~~~q~~~~~~~~t~~~n-----------l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (232)
T cd03300 68 ----PPHKRPVNTVFQNYALFPHLTVFEN-----------IAFGLRLK-KLPKAEIKERVAEALDLVQLEG--------- 122 (232)
T ss_pred ----ChhhcceEEEecccccCCCCcHHHH-----------HHHHHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 11123567777776554332 4444 33322111 1122344567788999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
.+++.+..||+|||||++||||| |||+++||. +.|||++|| ..+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 123 --------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999863 689999999 467
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 320 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 320 (350)
.++||+++ +|++|++++.|++++++..+..+.++
T Consensus 195 ~~~~d~i~-~l~~G~~~~~~~~~~~~~~~~~~~~~ 228 (232)
T cd03300 195 LTMSDRIA-VMNKGKIQQIGTPEEIYEEPANRFVA 228 (232)
T ss_pred HHhcCEEE-EEECCEEEecCCHHHHHhCCchHHHH
Confidence 78999996 59999999999998888765544443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=270.57 Aligned_cols=196 Identities=16% Similarity=0.260 Sum_probs=153.1
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|++ . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~-~---~---l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~--- 65 (235)
T cd03299 1 LKVENLSKDWKE-F---K---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN--- 65 (235)
T ss_pred CeeEeEEEEeCC-c---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc---
Confidence 478999999964 2 3 777999999999999999999999999999999999 999999999998752
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.+++++|+...+... ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 66 ---~~~~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 121 (235)
T cd03299 66 ---LPPEKRDISYVPQNYALFPHM----------TVYKNIAYGLKKR-KVDKKEIERKVLEIAEMLGIDH---------- 121 (235)
T ss_pred ---CChhHcCEEEEeecCccCCCc----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 111133567777765444322 3334443332211 1123445567888999999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
.+++++.+|||||+||++||||| |||+++||. ++|+|++|| ..+.
T Consensus 122 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 122 -------LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred -------HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45889999999999999999999 999999863 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESS 317 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~ 317 (350)
.+||+++ +|++|++++.|+++++...+..+
T Consensus 195 ~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~ 224 (235)
T cd03299 195 ALADKVA-IMLNGKLIQVGKPEEVFKKPKNE 224 (235)
T ss_pred HhCCEEE-EEECCEEEEecCHHHHHhCcccH
Confidence 8999996 59999999999998887765444
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=268.65 Aligned_cols=184 Identities=15% Similarity=0.224 Sum_probs=142.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++||+++|+. . ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~---~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 64 (213)
T TIGR01277 1 LALDKVRYEYEH---L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTG--- 64 (213)
T ss_pred CeEEeeeEEeCC---c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccc---
Confidence 478999999963 3 567999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.++|++|+...+..+ ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ---~~~~~~~i~~v~q~~~~~~~~----------t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---------- 120 (213)
T TIGR01277 65 ---LAPYQRPVSMLFQENNLFAHL----------TVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIAD---------- 120 (213)
T ss_pred ---CChhccceEEEeccCccCCCC----------cHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHH----------
Confidence 111123456777665444322 444554433211101 11233556788999999976
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++.+.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 121 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 121 -------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred -------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5677
Q ss_pred hcccEEEEEecCCeEeecCC
Q 018829 287 SLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~ 306 (350)
.+||+++ +|++|++++.|.
T Consensus 194 ~~~d~v~-~l~~g~i~~~~~ 212 (213)
T TIGR01277 194 AIASQIA-VVSQGKIKVVSD 212 (213)
T ss_pred hhcCeEE-EEECCeEEEecC
Confidence 8999996 599999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=277.52 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=157.9
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.-.-
T Consensus 7 ~~~~i~~~~~~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~ 75 (257)
T PRK14246 7 AEDVFNISRLYLYIND---KAI---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLY 75 (257)
T ss_pred hhhheeeeeEEEecCC---cee---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEE
Confidence 4578999999999974 234 666999999999999999999999999999999999 99988777764211
Q ss_pred CCccccccc--cCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 151 GTYFLQEYT--IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 151 ~~~~~~~~~--~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
.+....... ..+..++|++|+...+.+. ++.+|+.++..........+..+++.++++.+++.+.+
T Consensus 76 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 143 (257)
T PRK14246 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFPHL----------SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-- 143 (257)
T ss_pred CCcccccCCHHHHhcceEEEccCCccCCCC----------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc--
Confidence 000000000 0123456666665444332 34445444322111112234556788899999996411
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-- 282 (350)
.+..++.+..||+|||||++||||| ||||++||. +.|||++||
T Consensus 144 -----------~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 144 -----------YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred -----------hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence 0034778999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
+.+..+||+++ +|++|++++.|++++++..|.+++++.+
T Consensus 213 ~~~~~~~d~v~-~l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 213 QQVARVADYVA-FLYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 56778999996 5999999999999999988877776554
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=274.85 Aligned_cols=214 Identities=16% Similarity=0.194 Sum_probs=154.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
-+++|++++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++...
T Consensus 6 ~~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~-- 77 (251)
T PRK14244 6 ASVKNLNLWYGS-K--QI---LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV-- 77 (251)
T ss_pred EEeeeEEEEECC-e--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhc--
Confidence 478999999964 2 34 677999999999999999999999999999999975100003689999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC-CCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.......++.++|++|+...+...+. +|+.++...... ......++.+.++++.+++.+.+.
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~tv~-----------~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 140 (251)
T PRK14244 78 DTNVVLLRAKVGMVFQKPNPFPKSIY-----------DNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------ 140 (251)
T ss_pred ccchHHHhhhEEEEecCcccccCCHH-----------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh------
Confidence 00000113356677776544433344 444433211111 112334566788899999965210
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~ 287 (350)
+.+++.+.+||||||||++||||| ||||++||. ++|||++|| ..+..
T Consensus 141 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 141 -------DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred -------hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 024678899999999999999999 999999874 799999999 56778
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
+||+++ +|++|++++.|++++++..+.+++++.
T Consensus 214 ~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14244 214 VSDRVA-FFQSGRIVEYNTTQEIFKNPQSSKTKR 246 (251)
T ss_pred hcCEEE-EEECCEEEEeCCHHHHhcCCCChHHHH
Confidence 999996 599999999999999988877666543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=304.49 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=159.6
Q ss_pred CCCcEEEEEEEEEECCC--------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE
Q 018829 71 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 142 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~--------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I 142 (350)
..++|+++|++++|+.+ ....+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i 342 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEI 342 (529)
T ss_pred CCCcccccCcEEEeecCcccccccccccee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEE
Confidence 34689999999999521 01235 666999999999999999999999999999999974 57999
Q ss_pred EECCEeCCCCccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhhc-CCCcHHHHHHHHHHHHH
Q 018829 143 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHK 219 (350)
Q Consensus 143 ~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~v~q~~~l~~~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~ 219 (350)
.++|+++.... .......+..++|++|+.. .+.. .++.+|+.++..... ..+....++++.++++.
T Consensus 343 ~~~g~~i~~~~-~~~~~~~~~~i~~v~q~~~~~l~~~----------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 411 (529)
T PRK15134 343 WFDGQPLHNLN-RRQLLPVRHRIQVVFQDPNSSLNPR----------LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEE 411 (529)
T ss_pred EECCEEccccc-hhhHHHhhhceEEEEeCchhhcCCc----------ccHHHHHHHHHHhccccCChHHHHHHHHHHHHH
Confidence 99999875110 0000001234567777642 2211 144455544332111 11233455678889999
Q ss_pred cCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------
Q 018829 220 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 273 (350)
Q Consensus 220 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------- 273 (350)
+++.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 412 ~~l~~~----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 475 (529)
T PRK15134 412 VGLDPE----------------TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475 (529)
T ss_pred cCCCHH----------------HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh
Confidence 999731 35889999999999999999999 999999873
Q ss_pred CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 274 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 274 g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
|+|||+||| +.+..+||+++ +|++|++++.|++++++..|.+++++.++
T Consensus 476 ~~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
T PRK15134 476 QLAYLFISHDLHVVRALCHQVI-VLRQGEVVEQGDCERVFAAPQQEYTRQLL 526 (529)
T ss_pred CCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEEcCHHHHhcCCCChHHHHHh
Confidence 789999999 57788999996 59999999999999999888777765443
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=270.71 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=138.1
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
+++||+++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~-~--~~---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~----- 64 (213)
T cd03235 1 EVEDLTVSYGG-H--PV---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE----- 64 (213)
T ss_pred CcccceeEECC-E--Ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-----
Confidence 46899999964 2 34 666999999999999999999999999999999999 99999999997753
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC---CCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .++.++|++|+..... .+..++.+|+.++...... ......++++.++++.+++.+
T Consensus 65 -~---~~~~i~~v~q~~~~~~--------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 124 (213)
T cd03235 65 -K---ERKRIGYVPQRRSIDR--------DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-------- 124 (213)
T ss_pred -H---HHhheEEecccccccc--------CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH--------
Confidence 0 1224577777654310 0112444555443221100 112344567888999999986
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 125 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 125 ---------LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195 (213)
T ss_pred ---------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEecCCeEeecC
Q 018829 286 LSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g 305 (350)
.++||+++ +|++| +++.|
T Consensus 196 ~~~~d~i~-~l~~~-~~~~g 213 (213)
T cd03235 196 LEYFDRVL-LLNRT-VVASG 213 (213)
T ss_pred HHhcCEEE-EEcCc-EeecC
Confidence 78999996 48875 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=297.37 Aligned_cols=193 Identities=17% Similarity=0.268 Sum_probs=159.5
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++++++|++|+|++ ++||++ |||++.+||++||+|.||||||||+|+|+|.|+ |++|+|+++|+...
T Consensus 5 ~~~ll~~~~i~K~Fgg---V~AL~~---v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~ 73 (500)
T COG1129 5 TPPLLELRGISKSFGG---VKALDG---VSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVA 73 (500)
T ss_pred ccceeeeecceEEcCC---ceeecc---ceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEcc
Confidence 3468999999999986 678555 999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeecccc-ccccchhhhhHhhHH-HHHhhhhhhhhhh---cCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~-~~~~~v~q~~~l~~~-~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
. ..+.+.. .-+.+|+|++.+++. +|.+|+.++.... +..+.....+++.++|+.+++...
T Consensus 74 ~---------------~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~ 138 (500)
T COG1129 74 F---------------SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID 138 (500)
T ss_pred C---------------CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC
Confidence 1 1122221 123446677777666 7778887775543 235678889999999999998632
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIii 280 (350)
.+....+||.||||.|+||||| ||||++|.. |.+||+|
T Consensus 139 -----------------~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~I 201 (500)
T COG1129 139 -----------------PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI 201 (500)
T ss_pred -----------------hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2788999999999999999999 999999753 9999999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
|| +++.++||||. ||.+|+.+...+.
T Consensus 202 SHrl~Ei~~i~Drit-VlRDG~~v~~~~~ 229 (500)
T COG1129 202 SHRLDEVFEIADRIT-VLRDGRVVGTRPT 229 (500)
T ss_pred cCcHHHHHHhcCEEE-EEeCCEEeeeccc
Confidence 99 89999999996 5999999998873
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=275.95 Aligned_cols=199 Identities=15% Similarity=0.193 Sum_probs=148.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc---ccEEEECCEeC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 149 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i 149 (350)
++|+++||++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.++
T Consensus 3 ~~l~~~nl~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 3 TIIRVEKLAKTFNQ-H--QA---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTV 71 (262)
T ss_pred cEEEEeeEEEEeCC-e--EE---EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEec
Confidence 58999999999964 2 34 666999999999999999999999999999999998 75 49999999887
Q ss_pred CCCc-cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh-------cCCCcHHHHHHHHHHHHHcC
Q 018829 150 DGTY-FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIG 221 (350)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~-------~~~~~~~~~~~i~~~l~~~g 221 (350)
.... ........++.++|++|+...+..+ ++.+|+.++.... ........++++.++++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 141 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRL----------SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVG 141 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCC----------cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcC
Confidence 4210 0000011123456777665444332 3334443321100 00012334567889999999
Q ss_pred CCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------Cc
Q 018829 222 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 275 (350)
Q Consensus 222 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~ 275 (350)
+.+ ..++.+.+||||||||++||||| ||||++||. |+
T Consensus 142 l~~-----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 204 (262)
T PRK09984 142 MVH-----------------FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI 204 (262)
T ss_pred CHH-----------------HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 986 45889999999999999999999 999999873 68
Q ss_pred eEEEEec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 276 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 276 TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
|||++|| ..+.++||+++ +|++|++++.|+++++
T Consensus 205 tvii~tH~~~~~~~~~d~i~-~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 205 TVVVTLHQVDYALRYCERIV-ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEEeCCHHHHHHhCCEEE-EEECCEEEEeCCHHHh
Confidence 9999999 46789999996 5999999999998775
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=263.19 Aligned_cols=188 Identities=16% Similarity=0.207 Sum_probs=157.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++.+.+++.+|... +..+ |+|+|++|.+||+++++||||||||||+|+++|+.+ |+.|+|.+||..+++
T Consensus 2 ~~l~~~~~sl~y~g~-~~~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g- 71 (259)
T COG4525 2 CMLNVSHLSLSYEGK-PRSA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG- 71 (259)
T ss_pred ceeehhheEEecCCc-chhh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC-
Confidence 578899999999743 3346 556999999999999999999999999999999999 999999999998862
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+..--+.||||..++++ ++.+|+.||+... ..++.+..+.+.+.+..+||.+
T Consensus 72 -------------------PgaergvVFQ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~------- 124 (259)
T COG4525 72 -------------------PGAERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEG------- 124 (259)
T ss_pred -------------------CCccceeEeccCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCccc-------
Confidence 11122445666677777 8899999998854 4556778888999999999998
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
..++++.+||||||||+.||||| |||+.+||. |+.+++||| +
T Consensus 125 ----------~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 125 ----------AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred ----------ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 45899999999999999999999 999999863 999999999 6
Q ss_pred HHHhcccEEEEEec--CCeEeecCCcc
Q 018829 284 DLLSLTDRARIRTY--LGELLGIPPAK 308 (350)
Q Consensus 284 ~~~~~aDri~v~l~--~G~iv~~g~~~ 308 (350)
++.-+|+|++ +|. .|++++.-+++
T Consensus 195 EAlflatrLv-vlsp~pgRvv~~~~~d 220 (259)
T COG4525 195 EALFLATRLV-VLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHhhhheeE-EecCCCceeeEecCCC
Confidence 8889999995 587 47888776553
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=270.14 Aligned_cols=190 Identities=13% Similarity=0.130 Sum_probs=142.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++||++.|+. .++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHI---LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLP- 68 (230)
T ss_pred CEEEeEEEEeCC---eEE---ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCC-
Confidence 578999999974 245 666999999999999999999999999999999999 99999999998875210
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC-CCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~~~~ 233 (350)
.....++.++|++|+...+..+ ++.+|+.++..... . ...+.+.++++.++ +.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~l~~--------- 123 (230)
T TIGR03410 69 --PHERARAGIAYVPQGREIFPRL----------TVEENLLTGLAALP-R---RSRKIPDEIYELFPVLKE--------- 123 (230)
T ss_pred --HHHHHHhCeEEeccCCcccCCC----------cHHHHHHHHHHhcC-c---chHHHHHHHHHHHHhHHH---------
Confidence 0011123456777665444322 34444444322111 1 11233456666665 444
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 195 (230)
T TIGR03410 124 --------MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA 195 (230)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH
Confidence 45889999999999999999999 999999873 689999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCcccc
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
..+||+++ ++++|++++.|+++++
T Consensus 196 ~~~~d~v~-~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 196 RELADRYY-VMERGRVVASGAGDEL 219 (230)
T ss_pred HHhCCEEE-EEECCEEEEECCHHHc
Confidence 78999996 5999999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=301.13 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=152.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC--cccEEEECCEeC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 149 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i 149 (350)
+++|+++|++++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.++
T Consensus 3 ~~~l~~~nl~~~~~~---~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 3 EYLLEMKNITKTFGG---VKA---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEEL 71 (506)
T ss_pred CceEEEeeeEEEeCC---eEe---ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEEC
Confidence 358999999999964 245 666999999999999999999999999999999998 7 799999999987
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
... ......++.++|++|+...+..+ ++.+|+.++.... ...+.....+++.++++.+++..
T Consensus 72 ~~~---~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 135 (506)
T PRK13549 72 QAS---NIRDTERAGIAIIHQELALVKEL----------SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI--- 135 (506)
T ss_pred CCC---CHHHHHHCCeEEEEeccccCCCC----------cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC---
Confidence 511 00111123467777765443322 4455555443211 01122345567889999999976
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH 282 (350)
..++++.+||||||||++||||| ||||++||+ |+|||++||
T Consensus 136 --------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH 201 (506)
T PRK13549 136 --------------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISH 201 (506)
T ss_pred --------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35889999999999999999999 999999884 789999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
+.+..+||+++ +|++|+++..|+++++.
T Consensus 202 ~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 202 KLNEVKAISDTIC-VIRDGRHIGTRPAAGMT 231 (506)
T ss_pred cHHHHHHhcCEEE-EEECCEEeeecccccCC
Confidence 57778999996 59999999999887763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=271.69 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=158.7
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++||++.|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+.......|++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~~~-~--~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD-A--HI---LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC-e--EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5899999999974 2 34 6779999999999999999999999999999998641100138999999999875110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
......++.++|++|+...+. .++.+|+.++............++++.++++.+++...+.
T Consensus 77 --~~~~~~~~~i~~~~q~~~~~~-----------~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------ 137 (250)
T PRK14266 77 --VDVVELRKKVGMVFQKPNPFP-----------KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK------ 137 (250)
T ss_pred --ccHHHHhhheEEEecCCccCc-----------chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH------
Confidence 001111335667776654332 2444555443221111122345677888899999864210
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~ 287 (350)
..+++.+..||||||||++||||| |||+++||. +.|||++|| ..+..
T Consensus 138 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 138 -------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred -------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 135788999999999999999999 999999874 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
+||+++ +|++|++++.|++++++..+..+.+..+
T Consensus 211 ~~~~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14266 211 VSKYTS-FFLNGEIIESGLTDQIFINPKDKRTEDY 244 (250)
T ss_pred hcCEEE-EEECCeEEEeCCHHHHHhCCCChHHHHH
Confidence 999996 5999999999999999888777765443
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=300.40 Aligned_cols=197 Identities=12% Similarity=0.179 Sum_probs=152.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|++ .++ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 3 ~~i~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 71 (501)
T PRK10762 3 ALLQLKGIDKAFPG---VKA---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTFN 71 (501)
T ss_pred ceEEEeeeEEEeCC---eEE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 57999999999964 234 666999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh---cCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
. .....++.++|++|+...+..+ ++.+|+.++.... ...+....++++.++++.+|+.+
T Consensus 72 ~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 133 (501)
T PRK10762 72 G---PKSSQEAGIGIIHQELNLIPQL----------TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF----- 133 (501)
T ss_pred C---HHHHHhCCEEEEEcchhccCCC----------cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----
Confidence 0 0011123456666654333222 4555555543211 01122344567888999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 134 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 134 ------------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred ------------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45889999999999999999999 999999874 789999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
+.+..+||+++ +|++|+++..|+++++.
T Consensus 202 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 202 KEIFEICDDVT-VFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHhCCEEE-EEeCCEEEEecCcCcCC
Confidence 57789999996 59999999999887653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=266.47 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=155.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+.+|++++..+. .. |+++||++++||+++|+||||||||||+|.|+|-+. |++|++.++|.++..
T Consensus 1 mi~a~nls~~~~Gr---~l---l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~-- 67 (259)
T COG4559 1 MIRAENLSYSLAGR---RL---LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNS-- 67 (259)
T ss_pred CeeeeeeEEEeecc---ee---ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhh--
Confidence 68999999998653 34 666999999999999999999999999999999999 999999999998761
Q ss_pred cccccccCCCccceeeccccccccchhhhhHh-hHHHHHhhhhhhhhhhcCCC-cHHHHHHHHHHHHHcCCCCccccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l-~~~~v~~~v~~~~~~~~~~~-~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+.+.+....-+..+|+..+ |+.++.+-|.+|...++... ..+..+.+.++|...++..
T Consensus 68 -------------~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~------- 127 (259)
T COG4559 68 -------------WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG------- 127 (259)
T ss_pred -------------CCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-------
Confidence 1111211111222333332 44467777777776554322 2345556788899999988
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------------chhhcCCCC----------------CceEEEE
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPts~Ld~----------------g~TVIii 280 (350)
++.+....|||||||||.+||.| |||||+||- |..|+.|
T Consensus 128 ----------la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~V 197 (259)
T COG4559 128 ----------LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197 (259)
T ss_pred ----------hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 67888999999999999999999 999999872 8899999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
-| +.++.+||||+ +|++|+++..|+|++++..
T Consensus 198 LHDLNLAA~YaDriv-ll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 198 LHDLNLAAQYADRIV-LLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred EccchHHHHhhheee-eeeCCeEeecCCHHHhcCH
Confidence 99 78999999995 5999999999999998765
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=302.57 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|......+....|+.++++.+++.... ..+.++++||+|+|+++. .++ |+|+||+|++|++++|+||||
T Consensus 283 ~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~l~i~~G~~~~ivG~sG 358 (529)
T TIGR02857 283 DYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRR-APA---LRPVSFTVPPGERVALVGPSG 358 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCC-ccc---ccceeEEECCCCEEEEECCCC
Confidence 4566666677778999999754332111 123699999999997543 134 667999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+|+|+|+++ |++|+|.++|.++. .+...+.+...++|+|++.++..++.+|+.+
T Consensus 359 sGKSTL~~ll~g~~~-----~~~G~I~~~g~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~ 418 (529)
T TIGR02857 359 AGKSTLLNLLLGFVD-----PTEGSIAVNGVPLA---------------DADADSWRDQIAWVPQHPFLFAGTIAENIRL 418 (529)
T ss_pred CCHHHHHHHHhcCCC-----CCCcEEEECCEehh---------------hCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence 999999999999999 99999999999986 1222333334455555555566667777765
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. ...++++.++++.+++.+.+.+..+++...|+ +....||||||||++||||| |||
T Consensus 419 ~~~-------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~------e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 419 ARP-------DASDAEIRRALERAGLDEFVAALPQGLDTLIG------EGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred cCC-------CCCHHHHHHHHHHcCcHHHHHhCcccccchhc------cccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 432 11235677888888888766555556655443 45568999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec-hHHHhcccEEEE
Q 018829 268 YLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 294 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v 294 (350)
|++||. ++|+|+||| -...+.||+|++
T Consensus 486 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 486 TAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEe
Confidence 999874 799999999 345577999953
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=273.47 Aligned_cols=193 Identities=11% Similarity=0.138 Sum_probs=139.1
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+.+. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 69 (237)
T cd03252 1 ITFEHVRFRYKPDG-PVI---LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLALA-- 69 (237)
T ss_pred CEEEEEEEecCCCC-ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehHhc--
Confidence 47899999996432 234 666999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH-----HHHHHHHHc--CCCCccc
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 227 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 227 (350)
.... .++.++|++|+ ..++..++.+|+.++.. ........+ .+.++++.+ ++..
T Consensus 70 -~~~~-~~~~i~~~~q~-----------~~~~~~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--- 130 (237)
T cd03252 70 -DPAW-LRRQVGVVLQE-----------NVLFNRSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDT--- 130 (237)
T ss_pred -CHHH-HhhcEEEEcCC-----------chhccchHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccc---
Confidence 0000 12234555554 33333356666655321 011111111 122333333 3333
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 --------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 196 (237)
T cd03252 131 --------------IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHR 196 (237)
T ss_pred --------------hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 34778999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+ ..||+++ +|++|++++.|++++++..
T Consensus 197 ~~~~-~~~d~v~-~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 197 LSTV-KNADRII-VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHH-HhCCEEE-EEECCEEEEEcCHHHHHhc
Confidence 455 4699996 5999999999999887765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=298.80 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=153.3
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|++ . .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 9 ~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 9 PPLLCARSISKQYSG-V--EV---LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCAR 77 (510)
T ss_pred CceEEEEeEEEEeCC-c--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 458999999999974 2 34 677999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .....+..++|++|+...+..+ ++.+|+.++... ....++++.++++.+++.+
T Consensus 78 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~------- 132 (510)
T PRK15439 78 LT---PAKAHQLGIYLVPQEPLLFPNL----------SVKENILFGLPK-----RQASMQKMKQLLAALGCQL------- 132 (510)
T ss_pred CC---HHHHHhCCEEEEeccCccCCCC----------cHHHHhhccccc-----chHHHHHHHHHHHHcCCCc-------
Confidence 10 1111122456777765433322 445555543321 1334567888999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ----------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 133 ----------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred ----------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999874 789999999 56
Q ss_pred HHhcccEEEEEecCCeEeecCCcccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+..+||+++ +|++|++++.|++++++.
T Consensus 203 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 203 IRQLADRIS-VMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHhCCEEE-EEECCEEEEecChHHcCH
Confidence 778999996 599999999999887653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=274.39 Aligned_cols=195 Identities=14% Similarity=0.198 Sum_probs=146.7
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++|++++|+++..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~~~~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~-- 73 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTA-----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQ-- 73 (272)
T ss_pred eEEEEeEEEEecCCcEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhHH--
Confidence 69999999999643333 777999999999999999999999999999999999 999999999988641
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh---hcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~---~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...+..++|++|+....... ...+.+++.++... .........++++.++++.+++.+
T Consensus 74 -----~~~~~~i~~v~q~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 134 (272)
T PRK15056 74 -----ALQKNLVAYVPQSEEVDWSF--------PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE------ 134 (272)
T ss_pred -----hhccceEEEeccccccccCC--------CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh------
Confidence 11122467777765321100 00122232221100 000112334556778899999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
..++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 135 -----------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 135 -----------FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45889999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.+..+||++ +++ +|++++.|++++++.
T Consensus 204 ~~~~~~d~v-~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 204 SVTEFCDYT-VMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhCCEE-EEE-CCEEEeecCHHhccC
Confidence 778999999 446 899999999988764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=273.00 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=156.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|+. . ++ |+++||+|++||+++|+||||||||||+++|+|+.+.....|++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~-~--~v---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-Y--QA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC-e--ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 457999999999974 2 34 67799999999999999999999999999999998710000179999999977631
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..........++.++|++|+...+ ..++.+|+.++............++++.++++.+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-----------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 152 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-----------PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK---- 152 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-----------cchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh----
Confidence 000000001123456666654433 22445555443321111111233466777888888753110
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
+..++.+..||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 153 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~ 223 (265)
T PRK14252 153 ---------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA 223 (265)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 145788999999999999999999 999999874 689999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.++||+++ +|++|++++.|++++++..+.+++++.++
T Consensus 224 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 260 (265)
T PRK14252 224 ARVSDYTA-YMYMGELIEFGATDTIFIKPKNKQTEDYI 260 (265)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 78999996 59999999999999998877776655443
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=299.41 Aligned_cols=198 Identities=15% Similarity=0.170 Sum_probs=152.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++++|++ . ++ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 3 TPYISMAGIGKSFGP-V--HA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK 71 (510)
T ss_pred CceEEEeeeEEEcCC-e--EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence 368999999999964 2 34 666999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh---cC---CCcHHHHHHHHHHHHHcCCCCc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RR---SDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~---~~---~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
.. .....++.++|++|+...+..+ ++.+|+.++.... .. .+..+..+++.++++.+|+.+
T Consensus 72 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~- 137 (510)
T PRK09700 72 LD---HKLAAQLGIGIIYQELSVIDEL----------TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV- 137 (510)
T ss_pred CC---HHHHHHCCeEEEeecccccCCC----------cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-
Confidence 11 1011123467777765443322 3444444332100 01 112345567889999999987
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIii 280 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 138 ----------------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 201 (510)
T PRK09700 138 ----------------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYI 201 (510)
T ss_pred ----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45889999999999999999999 999999874 7999999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
|| +.+..+||+++ +|++|+++..|++++++
T Consensus 202 sHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 202 SHKLAEIRRICDRYT-VMKDGSSVCSGMVSDVS 233 (510)
T ss_pred eCCHHHHHHhCCEEE-EEECCEEeeecchhhCC
Confidence 99 57778999996 59999999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=272.35 Aligned_cols=213 Identities=19% Similarity=0.201 Sum_probs=155.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.+.+++++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGN---FMA---VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 457899999999974 234 66799999999999999999999999999999999810000279999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
... . ....++.++|++|+...+. .++.+|+.++..... . .....+.+.++++.+++.+.+.
T Consensus 80 ~~~-~-~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~---- 140 (261)
T PRK14263 80 KGV-D-PVVVRRYIGMVFQQPNPFS-----------MSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVK---- 140 (261)
T ss_pred ccc-c-hHhhhhceEEEecCCcccc-----------ccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhh----
Confidence 100 0 0112334667777654332 244455544432111 1 1234567888899999865321
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 285 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~ 285 (350)
...++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 141 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i 211 (261)
T PRK14263 141 ---------DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211 (261)
T ss_pred ---------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 023678889999999999999999 999999874 789999999 567
Q ss_pred HhcccEEEEEec--------CCeEeecCCccccccCCCCCCh
Q 018829 286 LSLTDRARIRTY--------LGELLGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 286 ~~~aDri~v~l~--------~G~iv~~g~~~~l~~~~~~~~~ 319 (350)
..+|||++ +|+ +|++++.|++++++..+.++.+
T Consensus 212 ~~~~d~v~-~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 252 (261)
T PRK14263 212 IRVADTTA-FFSVDISQGTRTGYLVEMGPTAQIFQNPREQLT 252 (261)
T ss_pred HHhCCEEE-EEecccccccCCceEEEeCCHHHHHhCCCcHHH
Confidence 88999996 485 8999999999999887665443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=277.68 Aligned_cols=199 Identities=13% Similarity=0.146 Sum_probs=148.7
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
-|+++|++++|..+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~~~~-~~---l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-----~-~G~I~i~g~~i~~-- 69 (275)
T cd03289 2 QMTVKDLTAKYTEGGN-AV---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-----T-EGDIQIDGVSWNS-- 69 (275)
T ss_pred eEEEEEEEEEeCCCCC-cc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-----C-CcEEEECCEEhhh--
Confidence 3789999999964321 34 667999999999999999999999999999999996 4 6999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
+...+.+..+++++|+..+++.++.+|+..... . ..+++.++++.+|+.+
T Consensus 70 -------------~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~----~----~~~~~~~~l~~~gL~~--------- 119 (275)
T cd03289 70 -------------VPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK----W----SDEEIWKVAEEVGLKS--------- 119 (275)
T ss_pred -------------CCHHHHhhhEEEECCCcccchhhHHHHhhhccC----C----CHHHHHHHHHHcCCHH---------
Confidence 111112222333444444555566677642110 1 1245677888899987
Q ss_pred eeecchhhhhccCCCC-----------CCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEE
Q 018829 234 IFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVV 278 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVI 278 (350)
+.+++|.+ ||||||||++||||| ||||++||. ++|||
T Consensus 120 --------~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii 191 (275)
T cd03289 120 --------VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVI 191 (275)
T ss_pred --------HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34666665 999999999999999 999999873 79999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
+||| +.+ ..||||+ +|++|++++.|++++++..+ .+...++...
T Consensus 192 ~isH~~~~i-~~~dri~-vl~~G~i~~~g~~~~l~~~~--~~~~~~~~~~ 237 (275)
T cd03289 192 LSEHRIEAM-LECQRFL-VIEENKVRQYDSIQKLLNEK--SHFKQAISPS 237 (275)
T ss_pred EEECCHHHH-HhCCEEE-EecCCeEeecCCHHHHhhCc--HHHHHHHhhc
Confidence 9999 444 4599996 59999999999999998854 3445555443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=268.86 Aligned_cols=200 Identities=15% Similarity=0.207 Sum_probs=138.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.|+++|++++|+.... + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~~~~--~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~- 70 (229)
T cd03254 2 EIEFENVNFSYDEKKP--V---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIRDI- 70 (229)
T ss_pred eEEEEEEEEecCCCCc--c---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHHHc-
Confidence 3789999999964322 3 677999999999999999999999999999999999 9999999999876410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.. ...++.++|++|+ ..++..++.+|+.+.... .. ...+.++++.+++........+.
T Consensus 71 --~~-~~~~~~i~~~~q~-----------~~~~~~tv~~~~~~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~- 128 (229)
T cd03254 71 --SR-KSLRSMIGVVLQD-----------TFLFSGTIMENIRLGRPN---AT----DEEVIEAAKEAGAHDFIMKLPNG- 128 (229)
T ss_pred --CH-HHHhhhEEEecCC-----------chhhhhHHHHHHhccCCC---CC----HHHHHHHHHHhChHHHHHhCccc-
Confidence 00 0012234444444 444444666777654221 01 11223333333332210000000
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~ 287 (350)
-.+.+++.+.+||||||||++||||| |||+++||. ++|||++|| +.+ .
T Consensus 129 -----~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~ 202 (229)
T cd03254 129 -----YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-K 202 (229)
T ss_pred -----ccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h
Confidence 00034667899999999999999999 999999873 799999999 444 4
Q ss_pred cccEEEEEecCCeEeecCCccccccC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.||+++ +|++|++++.|+.++++..
T Consensus 203 ~~d~i~-~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 203 NADKIL-VLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred hCCEEE-EEeCCeEEEeCCHHHHHhh
Confidence 599996 5999999999888776543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=263.92 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=142.2
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+. . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~--- 66 (223)
T TIGR03740 1 LETKNLSKRFGK-Q--TA---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTR--- 66 (223)
T ss_pred CEEEeEEEEECC-E--EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc---
Confidence 578999999974 2 34 666999999999999999999999999999999999 999999999987641
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.. .+.+++++|+...+... +.+|+ .+..... .. ..+++.++++.+++.+
T Consensus 67 ---~~--~~~~~~~~q~~~~~~~~t~~~~~-----------~~~~~~~-~~----~~~~~~~~l~~~~l~~--------- 116 (223)
T TIGR03740 67 ---KD--LHKIGSLIESPPLYENLTARENL-----------KVHTTLL-GL----PDSRIDEVLNIVDLTN--------- 116 (223)
T ss_pred ---cc--cccEEEEcCCCCccccCCHHHHH-----------HHHHHHc-CC----CHHHHHHHHHHcCCcH---------
Confidence 11 12456777765444322 44443 3222111 11 1245778899999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
..++.+.+|||||+||++||||+ |||+++||. +.|||++|| +.+.
T Consensus 117 --------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 117 --------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45888999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEecCCeEeecCCcc
Q 018829 287 SLTDRARIRTYLGELLGIPPAK 308 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~ 308 (350)
.+||+++ +|++|+++..|++.
T Consensus 189 ~~~d~i~-~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 189 QLADHIG-IISEGVLGYQGKIN 209 (223)
T ss_pred HhcCEEE-EEeCCEEEEecChh
Confidence 8999996 59999999998874
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=267.68 Aligned_cols=190 Identities=10% Similarity=0.075 Sum_probs=142.3
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||++.|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~i~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-A--KI---LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST 73 (225)
T ss_pred CceEEEeccEEeeCC-c--ee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence 357999999999964 2 34 666999999999999999999999999999999999 999999999988751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .. . .++.++|++|+...+ ..++.+|+.++...... ...++++.++++.+++.+.
T Consensus 74 ~~-~~--~-~~~~i~~~~q~~~l~-----------~~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~------ 129 (225)
T PRK10247 74 LK-PE--I-YRQQVSYCAQTPTLF-----------GDTVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDT------ 129 (225)
T ss_pred CC-HH--H-HHhccEEEecccccc-----------cccHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChH------
Confidence 10 00 0 123456666664433 22444555443221111 1123556788999999632
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
..++++.+|||||+||++||||| ||||++||. +.|||++|| +
T Consensus 130 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ----------ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 35889999999999999999999 999999873 789999999 4
Q ss_pred HHHhcccEEEEEe-cCCeEeecCCcc
Q 018829 284 DLLSLTDRARIRT-YLGELLGIPPAK 308 (350)
Q Consensus 284 ~~~~~aDri~v~l-~~G~iv~~g~~~ 308 (350)
.+ ..||++++ | +++..+++|+++
T Consensus 200 ~~-~~~d~i~~-l~~~~~~~~~~~~~ 223 (225)
T PRK10247 200 EI-NHADKVIT-LQPHAGEMQEARYE 223 (225)
T ss_pred HH-HhCCEEEE-EecccchHhhhhhc
Confidence 55 46999965 7 577778888774
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=274.70 Aligned_cols=196 Identities=11% Similarity=0.027 Sum_probs=147.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc--------ccEEEEC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 145 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~--------~G~I~i~ 145 (350)
||+++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~-~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRH-R--AI---LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECC-E--eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 5899999999964 2 34 666999999999999999999999999999999999 87 8999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhc---CCCcHHHHHHHHHHHHHcCC
Q 018829 146 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGC 222 (350)
Q Consensus 146 G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl 222 (350)
|.++.... ... .++.+++++|+...+. ..++.+|+.++..... ........+.+.++++.+++
T Consensus 70 g~~~~~~~---~~~-~~~~~~~v~q~~~~~~----------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (272)
T PRK13547 70 GEPLAAID---APR-LARLRAVLPQAAQPAF----------AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135 (272)
T ss_pred CEEcccCC---HHH-HHhhcEEecccCCCCC----------CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc
Confidence 98874110 000 1113456666543221 1244455544321100 01112345667889999999
Q ss_pred CCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------------chhhcCCCC-----------
Q 018829 223 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------------NCPYLSFRD----------- 273 (350)
Q Consensus 223 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------------DEPts~Ld~----------- 273 (350)
.+ ..++++.+||||||||++||||| ||||++||.
T Consensus 136 ~~-----------------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 198 (272)
T PRK13547 136 TA-----------------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR 198 (272)
T ss_pred Hh-----------------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 87 45889999999999999999987 799999873
Q ss_pred ------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 274 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 274 ------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++|||++|| +.+.++||+++ +|++|++++.|++++++.
T Consensus 199 ~~~~~~~~tviiisH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 199 RLARDWNLGVLAIVHDPNLAARHADRIA-MLADGAIVAHGAPADVLT 244 (272)
T ss_pred HHHHhcCCEEEEEECCHHHHHHhCCEEE-EEECCeEEEecCHHHHcC
Confidence 689999999 56778999996 599999999999887754
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=268.20 Aligned_cols=193 Identities=15% Similarity=0.212 Sum_probs=140.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++.. ..+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~-- 69 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPV---LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVRDY-- 69 (234)
T ss_pred CEEEEEEEEeCCCC-ccc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhhhC--
Confidence 47899999996532 123 677999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH-----HHHHHHHHc--CCCCccc
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 227 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 227 (350)
.... .++.+++++|+...+ ..++.+|+.++... .......+ .+.++++.+ ++..
T Consensus 70 -~~~~-~~~~i~~~~q~~~~~-----------~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 130 (234)
T cd03251 70 -TLAS-LRRQIGLVSQDVFLF-----------NDTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDT--- 130 (234)
T ss_pred -CHHH-HHhhEEEeCCCCeec-----------cccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcce---
Confidence 0001 122456666654333 23455555543221 01111111 233444444 4554
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
..++.+..||||||||++||||| |||+++||. +.|||++||
T Consensus 131 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 196 (234)
T cd03251 131 --------------VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHR 196 (234)
T ss_pred --------------eeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34778999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
..+.. ||+++ +|++|++++.|++++++..
T Consensus 197 ~~~~~~-~d~v~-~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 197 LSTIEN-ADRIV-VLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHhh-CCEEE-EecCCeEeeeCCHHHHHHc
Confidence 45544 99996 5999999999998877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=264.20 Aligned_cols=192 Identities=17% Similarity=0.192 Sum_probs=141.9
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.++++|+++.|+++. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYGA 72 (220)
T ss_pred CEEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHhc
Confidence 378999999996431 1245 666999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
........++.+++++|+...+..+ ++.+|+.++............++.+.++++.+|+.+
T Consensus 73 -~~~~~~~~~~~i~~~~q~~~~~~~~----------t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 133 (220)
T TIGR02982 73 -SEKELVQLRRNIGYIFQAHNLLGFL----------TARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-------- 133 (220)
T ss_pred -CHhHHHHHHhheEEEcCChhhcCCC----------CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh--------
Confidence 0000001123456666665444322 333444332211111123445567889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-~~~ 285 (350)
..++.+..||+|||||++||||| |||+++||. ++|||++|| ...
T Consensus 134 ---------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~ 204 (220)
T TIGR02982 134 ---------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI 204 (220)
T ss_pred ---------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 799999999 345
Q ss_pred HhcccEEEEEecCCeEe
Q 018829 286 LSLTDRARIRTYLGELL 302 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv 302 (350)
..+||+++ +|++|+++
T Consensus 205 ~~~~d~v~-~l~~g~~~ 220 (220)
T TIGR02982 205 LDVADRIV-HMEDGKLL 220 (220)
T ss_pred HhhCCEEE-EEECCEEC
Confidence 68999996 59999863
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=295.31 Aligned_cols=217 Identities=10% Similarity=0.091 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccch---hc---cc----------CCCCcEEEEEEEEEECCCc--eEEecCCCeeEeEEEe
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYD---QL---RT----------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVP 104 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~---~~---~~----------~~~~~l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~ 104 (350)
.|..+...+.+..|+.++++.+. +. .+ .....++++||+|+|++.. ..++ |+|+||+|+
T Consensus 290 ~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~---l~~vs~~i~ 366 (555)
T TIGR01194 290 ALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA---LGPIDLRIA 366 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce---eccceEEEc
Confidence 34556666777789999975321 11 10 0123599999999997431 1134 666999999
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhH
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN 184 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~ 184 (350)
+|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. +...+.+...++|+|+..
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~---------------~~~~~~~~~i~~v~q~~~ 426 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSA---------------DSRDDYRDLFSAIFADFH 426 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC---------------CCHHHHHhhCcEEccChh
Confidence 999999999999999999999999999 999999999999861 222233444566677777
Q ss_pred hhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh
Q 018829 185 MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 264 (350)
Q Consensus 185 l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL 264 (350)
++..++.+|.. ....++++.++++.+++.+.+...++++ .....||||||||++||||+
T Consensus 427 lf~~ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~-----------~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 427 LFDDLIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDGGF-----------STTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhhhhhhcccc----------cchhHHHHHHHHHHcCCchhhccccccc-----------CCcccCCHHHHHHHHHHHHH
Confidence 77766666631 1234566788899999987431111111 11256999999999999999
Q ss_pred ---------chhhcCCCC-----------------CceEEEEec-hHHHhcccEEEEEecCCeEeec
Q 018829 265 ---------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 304 (350)
Q Consensus 265 ---------DEPts~Ld~-----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~ 304 (350)
||||++||. ++|+|+||| ....+.||+|+ +|++|++++.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~-~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII-KLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE-EEECCEEEEe
Confidence 999999863 799999999 45567899995 5999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=293.92 Aligned_cols=212 Identities=10% Similarity=0.110 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhc--ccC---C-CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQL--RTR---I-GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~--~~~---~-~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|..+...+....|+.+++..+.+. ... . ...++++|++|+|+++.+ + |+|+||+|++|++++|+||||
T Consensus 285 ~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~--~---l~~i~~~i~~G~~~aivG~sG 359 (547)
T PRK10522 285 ALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGF--S---VGPINLTIKRGELLFLIGGNG 359 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCCe--E---EecceEEEcCCCEEEEECCCC
Confidence 4555666677777999987544321 111 1 135999999999974433 4 677999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+++|+|+++ |++|+|.++|+++.. +...+.+...++++|+..++..++.+| .
T Consensus 360 sGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~n-~- 417 (547)
T PRK10522 360 SGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTA---------------EQPEDYRKLFSAVFTDFHLFDQLLGPE-G- 417 (547)
T ss_pred CCHHHHHHHHhCCCC-----CCCeEEEECCEECCC---------------CCHHHHhhheEEEecChhHHHHhhccc-c-
Confidence 999999999999999 999999999999861 112222333445566666666665554 0
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhcc--CCCCCCHHHHHHHHHHHHh---------c
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~--~~~~LSGGqrQRvaIArAL---------D 265 (350)
....++.+.++++.+++..... ..+. ....||||||||++||||| |
T Consensus 418 ---------~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 418 ---------KPANPALVEKWLERLKMAHKLE--------------LEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred ---------CchHHHHHHHHHHHcCCchhhh--------------ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1233456778888898876320 0011 2468999999999999999 9
Q ss_pred hhhcCCCC-----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecC
Q 018829 266 CPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 266 EPts~Ld~-----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g 305 (350)
|||++||. ++|+|+||| ....+.||+|+ +|++|++++..
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~e~~ 531 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL-EMRNGQLSELT 531 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE-EEECCEEEEec
Confidence 99999863 689999999 45567899995 59999999873
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.48 Aligned_cols=227 Identities=10% Similarity=0.085 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|..++..+.+..|+.++++.+++.... ....|+++||+|+|+.....++ |+|+||+|++||++||+|||
T Consensus 344 ~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~S 420 (1466)
T PTZ00265 344 NITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGES 420 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECCC
Confidence 4566677777788999999877653211 1125899999999974322235 66699999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEE-CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTY-NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i-~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
|||||||+++|+|+++ |++|+|.+ +|.++.. +.....+..+++|+|++.++..++.+|+
T Consensus 421 GsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~i~~---------------~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI 480 (1466)
T PTZ00265 421 GCGKSTILKLIERLYD-----PTEGDIIINDSHNLKD---------------INLKWWRSKIGVVSQDPLLFSNSIKNNI 480 (1466)
T ss_pred CCCHHHHHHHHHHhcc-----CCCCeEEEeCCcchhh---------------CCHHHHHHhccEecccccchhccHHHHH
Confidence 9999999999999999 99999999 5677641 1111222333444444444445566666
Q ss_pred hhhhhhhc--------------------------------------------------CCCcHHHHHHHHHHHHHcCCCC
Q 018829 195 RHGELVIR--------------------------------------------------RSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 195 ~~~~~~~~--------------------------------------------------~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
.++..... .......++++.++++.+++.+
T Consensus 481 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~ 560 (1466)
T PTZ00265 481 KYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHD 560 (1466)
T ss_pred HhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHH
Confidence 55421000 0000123456788888888876
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.+.+..+++.. ...+.+..||||||||++||||| ||||++||. |+|+|
T Consensus 561 ~i~~lp~g~dT------~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvI 634 (1466)
T PTZ00265 561 FVSALPDKYET------LVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITI 634 (1466)
T ss_pred HHHhCccccCc------eeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEE
Confidence 43332333333 23456778999999999999999 999999873 68999
Q ss_pred EEec-hHHHhcccEEEEEecCC
Q 018829 279 VVTH-GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 279 iiTH-~~~~~~aDri~v~l~~G 299 (350)
+||| -...+.||+|+ +|++|
T Consensus 635 iIsHrls~i~~aD~Ii-vl~~g 655 (1466)
T PTZ00265 635 IIAHRLSTIRYANTIF-VLSNR 655 (1466)
T ss_pred EEeCCHHHHHhCCEEE-EEeCC
Confidence 9999 34447899996 59886
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=264.79 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=134.1
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|+++.|+.+. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 71 (220)
T cd03245 3 IEFRNVSFSYPNQE-IPA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIRQL-- 71 (220)
T ss_pred EEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhHHC--
Confidence 78999999996432 234 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.... .++.++|++|+.. ++..++.+|+.+.... . ..+.+.++++.+++.+.....++.+-
T Consensus 72 -~~~~-~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 72 -DPAD-LRRNIGYVPQDVT-----------LFYGTLRDNITLGAPL---A----DDERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred -CHHH-HHhhEEEeCCCCc-----------cccchHHHHhhcCCCC---C----CHHHHHHHHHHcCcHHHHHhcccccc
Confidence 0000 1223455555543 2333556666543211 1 12345567777887652100000000
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHHhcc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 289 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~~~a 289 (350)
. .....+.+||||||||++||||| ||||++||. ++|||++|| ....++|
T Consensus 132 ~------~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 132 L------QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred c------eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 0 01223469999999999999999 999999874 579999999 2334799
Q ss_pred cEEEEEecCCeEeecC
Q 018829 290 DRARIRTYLGELLGIP 305 (350)
Q Consensus 290 Dri~v~l~~G~iv~~g 305 (350)
|+++ +|++|++++.|
T Consensus 206 d~v~-~l~~g~i~~~~ 220 (220)
T cd03245 206 DRII-VMDSGRIVADG 220 (220)
T ss_pred CEEE-EEeCCeEeecC
Confidence 9996 59999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=267.41 Aligned_cols=194 Identities=11% Similarity=0.165 Sum_probs=137.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|+++.|+.....++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~i~~l~~~~~~~~~~~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI---LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIRDL-- 70 (238)
T ss_pred CeEEEEEEecCCCCCccc---eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehhhc--
Confidence 478999999964321234 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH-----HHHHHHHHc--CCCCccc
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 227 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 227 (350)
.... .++.++|++| +..++..++.+|+.++.... ......+ .+.++++.+ ++..
T Consensus 71 -~~~~-~~~~i~~~~q-----------~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 131 (238)
T cd03249 71 -NLRW-LRSQIGLVSQ-----------EPVLFDGTIAENIRYGKPDA---TDEEVEEAAKKANIHDFIMSLPDGYDT--- 131 (238)
T ss_pred -CHHH-HHhhEEEECC-----------chhhhhhhHHHHhhccCCCC---CHHHHHHHHHHcChHHHHHhhccccce---
Confidence 0000 0113444444 44444446677776543211 1111111 112222222 3333
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
..++.+.+||||||||++||||| |||+++||. ++|||++||
T Consensus 132 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~ 197 (238)
T cd03249 132 --------------LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHR 197 (238)
T ss_pred --------------eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 24677899999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+. +||+++ +|++|++++.|+.+++...
T Consensus 198 ~~~~~-~~d~v~-~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 198 LSTIR-NADLIA-VLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HHHHh-hCCEEE-EEECCEEEEeCCHHHHhhc
Confidence 4554 899996 5999999999988777653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=265.05 Aligned_cols=191 Identities=13% Similarity=0.227 Sum_probs=136.7
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+++..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~~~-- 68 (236)
T cd03253 1 IEFENVTFAYDPGRPV-----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIREV-- 68 (236)
T ss_pred CEEEEEEEEeCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhhhC--
Confidence 4789999999643323 777999999999999999999999999999999999 9999999999887510
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH-----HHHHHHHHc--CCCCccc
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 227 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 227 (350)
.... .++.++|++|+. .++..++.+|+.++... .......+ .+.+.++.+ ++..
T Consensus 69 -~~~~-~~~~i~~~~q~~-----------~~~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~--- 129 (236)
T cd03253 69 -TLDS-LRRAIGVVPQDT-----------VLFNDTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDT--- 129 (236)
T ss_pred -CHHH-HHhhEEEECCCC-----------hhhcchHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccc---
Confidence 0000 122345555553 33334666776654321 11111111 111222222 3333
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
..++.+.+||||||||++||||| |||+++||. ++|||++||
T Consensus 130 --------------~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~ 195 (236)
T cd03253 130 --------------IVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHR 195 (236)
T ss_pred --------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 34667889999999999999999 999999873 689999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+.+ ..||+++ +|++|++++.|+.+++..
T Consensus 196 ~~~~-~~~d~~~-~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 196 LSTI-VNADKII-VLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHH-HhCCEEE-EEECCEEEeeCCHHHHhh
Confidence 455 4599996 599999999998877765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=285.35 Aligned_cols=191 Identities=15% Similarity=0.206 Sum_probs=162.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++.+++++++|+|+. +.|.++ |||+|++||++||+|+||||||||+++|+|+|+ |++|+|.++|+.+..
T Consensus 2 ~~~l~~~~itK~f~~---~~And~---V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~ 70 (501)
T COG3845 2 EPALEMRGITKRFPG---VVANDD---VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRI 70 (501)
T ss_pred CceEEEeccEEEcCC---EEecCc---eeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEecc
Confidence 357999999999984 678555 999999999999999999999999999999999 999999999998862
Q ss_pred CccccccccCCCccceeecc-ccccccchhhhhHhhHH-HHHhhhhhhhhh--hcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d-~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~--~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
-.+.+ .+.-++||+|++.+++. |+.+||.++... ....+....++++.++.+.+|++=+.
T Consensus 71 ---------------~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp- 134 (501)
T COG3845 71 ---------------KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP- 134 (501)
T ss_pred ---------------CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-
Confidence 11222 23456778888888777 899999988763 23446678889999999999997533
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH 282 (350)
+++..+||-||||||.|-+|| ||||+-|.+ |+|||+|||
T Consensus 135 ----------------~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 135 ----------------DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred ----------------cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 889999999999999999999 999999753 999999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCC
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~ 306 (350)
+++.++|||+.| |..|+++...+
T Consensus 199 KL~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 199 KLKEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred cHHHHHHhhCeeEE-EeCCeEEeeec
Confidence 899999999975 99999877655
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=264.83 Aligned_cols=187 Identities=15% Similarity=0.125 Sum_probs=140.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC----cccEEEECCEeCCCCccccccccCCCccceeecc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 171 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p----~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d 171 (350)
|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++.. ....++.++|++|+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~~------~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLLP------LSIRGRHIATIMQN 70 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEechh------hhhhhheeEEEecC
Confidence 566999999999999999999999999999999999 8 89999999998751 11222356778777
Q ss_pred cc-ccc-cchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCC
Q 018829 172 TR-SLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 249 (350)
Q Consensus 172 ~~-~~~-~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 249 (350)
.. .+. .+ ++.+++.+...... .......+++.++++.+++.+. .+..++.+..
T Consensus 71 ~~~~~~~~~----------t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~--------------~~~~~~~~~~ 125 (230)
T TIGR02770 71 PRTAFNPLF----------TMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDP--------------EEVLKKYPFQ 125 (230)
T ss_pred chhhcCccc----------CHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCch--------------HHHHhCChhh
Confidence 53 121 11 22233322211111 1123345678899999999730 0045888999
Q ss_pred CCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeE
Q 018829 250 SDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 250 LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~i 301 (350)
||||||||++||||| ||||++||. ++|||++|| +.+..+||+++ +|++|++
T Consensus 126 LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~-~l~~G~i 204 (230)
T TIGR02770 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA-VMDDGRI 204 (230)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCEE
Confidence 999999999999999 999999863 689999999 56778999996 5999999
Q ss_pred eecCCccccccCCCCCCh
Q 018829 302 LGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 302 v~~g~~~~l~~~~~~~~~ 319 (350)
++.|++++++..+...+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 205 VERGTVKEIFYNPKHETT 222 (230)
T ss_pred EEeCCHHHHHhCcCCHHH
Confidence 999999999876654443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=265.44 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=134.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ... ..++++|+...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~------~~~---~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE------PGP---DRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC------CCh---hheEEecCcccC
Confidence 356999999999999999999999999999999999 999999999998751 000 124666655444
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhh-hcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~-~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
... ++.+|+.++... .........++++.++++.+++.+ ..++++.+|||||
T Consensus 67 ~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 119 (230)
T TIGR01184 67 PWL----------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE-----------------AADKRPGQLSGGM 119 (230)
T ss_pred CCC----------CHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHH-----------------HHcCChhhCCHHH
Confidence 322 333444332110 011122344566888999999986 4588999999999
Q ss_pred HHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCC
Q 018829 255 QYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 255 rQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 306 (350)
|||++||||| ||||++||. ++|||++|| +.+.++||+++ +|++|++++.|+
T Consensus 120 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~-~l~~G~i~~~~~ 198 (230)
T TIGR01184 120 KQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV-MLTNGPAANIGQ 198 (230)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE-EEeCCcEecccC
Confidence 9999999999 999999873 689999999 56788999996 599999999998
Q ss_pred cccc
Q 018829 307 AKQI 310 (350)
Q Consensus 307 ~~~l 310 (350)
..++
T Consensus 199 ~~~~ 202 (230)
T TIGR01184 199 ILEV 202 (230)
T ss_pred ceec
Confidence 7776
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.47 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=143.1
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEeC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i 149 (350)
.++++++||++.|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNE-N--EI---LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCC-E--Ee---eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 458999999999974 2 35 6669999999999999999999999999999998 57 8999999999987
Q ss_pred CCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
.... .....+..+++++|+...+... +.+++.+.... ... ..........+..+++.++++.+++.+.
T Consensus 74 ~~~~---~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~--- 142 (252)
T CHL00131 74 LDLE---PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS--KRK---FQGLPELDPLEFLEIINEKLKLVGMDPS--- 142 (252)
T ss_pred ccCC---hhhhheeeEEEEeccccccccccHHHHHHHhhhh--hhc---ccccccccHHHHHHHHHHHHHHcCCchh---
Confidence 5210 0011111345666665444333 33332221100 000 0000000112334567888999999732
Q ss_pred ccceeeeecchhhhhccCCC-CCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH 282 (350)
..++.+. .||||||||++||||| ||||++||. ++|||++||
T Consensus 143 -------------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 143 -------------FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred -------------hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3467776 5999999999999999 999999873 799999999
Q ss_pred --hHHHhc-ccEEEEEecCCeEeecCCccc
Q 018829 283 --GDLLSL-TDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 283 --~~~~~~-aDri~v~l~~G~iv~~g~~~~ 309 (350)
+.+..+ ||+++ +|++|++++.|+++.
T Consensus 210 ~~~~~~~~~~d~i~-~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 210 YQRLLDYIKPDYVH-VMQNGKIIKTGDAEL 238 (252)
T ss_pred CHHHHHhhhCCEEE-EEeCCEEEEecChhh
Confidence 455555 89996 599999999998873
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=292.21 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=148.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~~~ 71 (490)
T PRK10938 3 SLQISQGTFRLSDT---KT---LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRLS 71 (490)
T ss_pred eEEEEeEEEEcCCe---ee---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccccCC
Confidence 69999999999642 34 666999999999999999999999999999999999 99999999987653100
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
... .++.+++++|+.... +..+....+..++.+++.++ ...++++.++++.+++.+
T Consensus 72 ---~~~-~~~~i~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--------- 127 (490)
T PRK10938 72 ---FEQ-LQKLVSDEWQRNNTD--MLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITA--------- 127 (490)
T ss_pred ---HHH-HHHHhceeccCcchh--hcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHh---------
Confidence 000 112356666654221 00000001122444444321 123466788999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
++++++.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 128 --------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~ 199 (490)
T PRK10938 128 --------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIP 199 (490)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 56899999999999999999999 999999874 789999999 5778
Q ss_pred hcccEEEEEecCCeEeecCCccccccC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+||+++ +|++|+++..|++++++..
T Consensus 200 ~~~d~v~-~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 200 DFVQFAG-VLADCTLAETGEREEILQQ 225 (490)
T ss_pred hhCCEEE-EEECCEEEEeCCHHHHhcc
Confidence 9999996 5999999999998887654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=257.75 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=138.3
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
+++ ||+++|++. . + + +||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 2 ~~~-~l~~~~~~~--~-~--~---vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 2 LCV-DIEKRLPDF--T-L--K---IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSRK 66 (214)
T ss_pred cee-eeeEecCCe--e-e--C---ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecccccc
Confidence 455 999999752 2 2 5 9999999 9999999999999999999999999 999999999988641000
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.......++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~---------- 123 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHL----------NVRENLAFGLKRK---RNREDRISVDELLDLLGLDH---------- 123 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCC----------CHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHh----------
Confidence 000011123456777665444322 3344443332111 12334567888999999986
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 124 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 124 -------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred -------HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5677
Q ss_pred hcccEEEEEecCCeEeecC
Q 018829 287 SLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g 305 (350)
.+||+++ +|++|++++.|
T Consensus 197 ~~~d~i~-~l~~G~i~~~g 214 (214)
T cd03297 197 YLADRIV-VMEDGRLQYIG 214 (214)
T ss_pred HhcCEEE-EEECCEEEecC
Confidence 8999996 59999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=262.90 Aligned_cols=190 Identities=12% Similarity=0.155 Sum_probs=137.4
Q ss_pred CCCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 70 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 70 ~~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
...++++++|++++|++.....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 78 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLV---LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPI 78 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCch
Confidence 34678999999999964321234 666999999999999999999999999999999999 9999999999876
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCC--CcHHHHHHHHHHHHHc--CCCCc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKI--GCEPS 225 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~--~~~~~~~~i~~~l~~~--gl~~~ 225 (350)
... .....++.++|++ |+..++..++.+|+.++....... .....+..+.++++.+ |+.+
T Consensus 79 ~~~----~~~~~~~~i~~~~-----------q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~- 142 (226)
T cd03248 79 SQY----EHKYLHSKVSLVG-----------QEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT- 142 (226)
T ss_pred HHc----CHHHHHhhEEEEe-----------cccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-
Confidence 410 0001112334444 444444457778876543311000 0001112245667777 7776
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEe
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 281 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiT 281 (350)
.+++++.+||||||||++||||| ||||++||. +.|+|++|
T Consensus 143 ----------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 206 (226)
T cd03248 143 ----------------EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIA 206 (226)
T ss_pred ----------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 45888999999999999999999 999999873 68999999
Q ss_pred c--hHHHhcccEEEEEecCCeE
Q 018829 282 H--GDLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~i 301 (350)
| +.+. .||+++ +|++|++
T Consensus 207 h~~~~~~-~~d~i~-~l~~g~i 226 (226)
T cd03248 207 HRLSTVE-RADQIL-VLDGGRI 226 (226)
T ss_pred CCHHHHH-hCCEEE-EecCCcC
Confidence 9 4554 599996 5999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=290.50 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=148.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~-~--~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~~ 71 (501)
T PRK11288 3 PYLSFDGIGKTFPG-V--KA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRFA 71 (501)
T ss_pred ceEEEeeeEEEECC-E--EE---EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCC
Confidence 58999999999964 2 34 667999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .....++.++|++|+...+... ++.+|+.++.... ...+..+.++++.++++.+++.+
T Consensus 72 ~---~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 132 (501)
T PRK11288 72 S---TTAALAAGVAIIYQELHLVPEM----------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI------ 132 (501)
T ss_pred C---HHHHHhCCEEEEEechhccCCC----------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC------
Confidence 0 1111233556666654433222 4445555432110 11123345567889999999986
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
..++++.+||||||||++||||| ||||++||. |+|||+||| +
T Consensus 133 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 133 -----------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred -----------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34889999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
.+..+||+++ +|++|+++..++.
T Consensus 202 ~~~~~~d~i~-~l~~G~i~~~~~~ 224 (501)
T PRK11288 202 EIFALCDAIT-VFKDGRYVATFDD 224 (501)
T ss_pred HHHHhCCEEE-EEECCEEEeecCc
Confidence 7778999996 5999999876653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=321.96 Aligned_cols=230 Identities=12% Similarity=0.076 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhccc-------------------------CCCCcEEEEEEEEEECCCceEEecCCCe
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRT-------------------------RIGSLTDAKNKILSYTPGAWIENVGGMT 97 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~-------------------------~~~~~l~i~~l~~~y~~~~~~~~l~~L~ 97 (350)
.|........+++|+.++++.+++... +..+.|+++||+++|+++.+ ++ |+
T Consensus 1161 ~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~-~v---L~ 1236 (1490)
T TIGR01271 1161 SSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGR-AV---LQ 1236 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCc-ce---ee
Confidence 455555566778899999876655321 01235999999999975432 34 67
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccccc
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 177 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 177 (350)
|+||+|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.++. .+..++.+...+
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~---------------~i~~~~lR~~is 1295 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWN---------------SVTLQTWRKAFG 1295 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcc---------------cCCHHHHHhceE
Confidence 7999999999999999999999999999999986 4799999999986 122223333334
Q ss_pred chhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHH
Q 018829 178 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 257 (350)
Q Consensus 178 ~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 257 (350)
+|+|++.+|..++.+|+... ....++++.++++.+++.+.+...++++...|++ ....||||||||
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp~--------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e------~G~nLSgGQrQr 1361 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDPY--------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD------GGYVLSNGHKQL 1361 (1490)
T ss_pred EEeCCCccCccCHHHHhCcc--------cCCCHHHHHHHHHHCCCHHHHHhCcccccccccc------CCCcCCHHHHHH
Confidence 44444444444555555311 0123467888899999877554444555554433 345799999999
Q ss_pred HHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 258 QIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 258 vaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++||||| ||||++||. ++|||+||| -.....||||+ +|++|+|++.|+|+++++
T Consensus 1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIl-vL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFL-VIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEeCCHHHHHc
Confidence 9999999 999999873 899999999 34555699996 599999999999999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=267.34 Aligned_cols=178 Identities=20% Similarity=0.308 Sum_probs=143.7
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccccc
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 177 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 177 (350)
+++|+++...++||.|+||||||||+|+|+|+.+ |++|.|.+||.-+......-.....++.++|+|||.++|..
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 4899999867999999999999999999999999 99999999998653111000111224566777777777765
Q ss_pred chhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHH
Q 018829 178 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 257 (350)
Q Consensus 178 ~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 257 (350)
| +|..|+.||... .......++...+|+.+ +++++|..||||||||
T Consensus 91 ~----------tVrgNL~YG~~~-------~~~~~fd~iv~lLGI~h-----------------LL~R~P~~LSGGEkQR 136 (352)
T COG4148 91 Y----------TVRGNLRYGMWK-------SMRAQFDQLVALLGIEH-----------------LLDRYPGTLSGGEKQR 136 (352)
T ss_pred e----------EEecchhhhhcc-------cchHhHHHHHHHhCcHH-----------------HHhhCCCccCcchhhH
Confidence 5 344444444331 13455677888999999 7899999999999999
Q ss_pred HHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 258 QIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 258 vaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
|||+||| |||.++||. +.+|++||| ++++++||+++ +|++|++.+.|+.++
T Consensus 137 VAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e~ 215 (352)
T COG4148 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVV-VLENGKVKASGPLEE 215 (352)
T ss_pred HHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE-EecCCeEEecCcHHH
Confidence 9999999 999999984 899999999 89999999995 699999999999999
Q ss_pred cccCCC
Q 018829 310 IFDIPE 315 (350)
Q Consensus 310 l~~~~~ 315 (350)
++..+.
T Consensus 216 v~~~~~ 221 (352)
T COG4148 216 VWGSPD 221 (352)
T ss_pred HhcCcc
Confidence 998874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.05 Aligned_cols=196 Identities=15% Similarity=0.184 Sum_probs=148.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC--cccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i~~ 151 (350)
+|+++|++++|++ .++ |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~~---~~i---l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGG---VKA---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCC---eEe---ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 4789999999964 245 666999999999999999999999999999999998 7 79999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--c-CCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--R-RSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~-~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
. ......++.++|++|+...+..+ ++.+|+.++.... . ........+++.++++.+++.+..
T Consensus 70 ~---~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 134 (500)
T TIGR02633 70 S---NIRDTERAGIVIIHQELTLVPEL----------SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN-- 134 (500)
T ss_pred C---CHHHHHhCCEEEEeeccccCCCC----------cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc--
Confidence 1 01111123467777765433322 3444444432211 0 012234556788899999997621
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
.++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 135 --------------~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 135 --------------VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred --------------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 2567899999999999999999 999999874 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
+.+..+||+++ +|++|+++..++++++
T Consensus 201 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 201 LNEVKAVCDTIC-VIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhCCEEE-EEeCCeEeeecCcccC
Confidence 57788999996 5999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=290.49 Aligned_cols=192 Identities=14% Similarity=0.197 Sum_probs=147.1
Q ss_pred EEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcccc
Q 018829 77 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 156 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 156 (350)
++|++++|++ . ++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~~nl~~~~~~-~--~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~--- 66 (491)
T PRK10982 1 MSNISKSFPG-V--KA---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDFKS--- 66 (491)
T ss_pred CCceEEEeCC-E--Ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCCCC---
Confidence 4789999964 2 34 666999999999999999999999999999999999 99999999999875210
Q ss_pred ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC--CCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 157 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 157 ~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~--~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.....++.++|++|+...+..+ ++.+|+.++...... .+.....+++.++++.+++..
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 126 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQR----------SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI---------- 126 (491)
T ss_pred HHHHHhCCEEEEecccccccCC----------CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC----------
Confidence 0011123456777765433222 444555443211101 122344567888999999986
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+..
T Consensus 127 -------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 127 -------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred -------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34888999999999999999999 999999874 789999999 57778
Q ss_pred cccEEEEEecCCeEeecCCcccc
Q 018829 288 LTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l 310 (350)
+||+++ +|++|++++.|+++++
T Consensus 200 ~~d~i~-~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 200 LCDEIT-ILRDGQWIATQPLAGL 221 (491)
T ss_pred hCCEEE-EEECCEEEeecChhhC
Confidence 999996 5999999999988765
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=250.95 Aligned_cols=217 Identities=14% Similarity=0.163 Sum_probs=172.3
Q ss_pred CCcEEEEEEEEEECCC------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC
Q 018829 72 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
+++++++|+++.|... ....|++- |||++++|+.+||+|.||||||||.|+|+|+.+ |++|+|.+|
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~---vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n 73 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP---VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILIN 73 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc---eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEEC
Confidence 4678999999988532 22567555 999999999999999999999999999999999 999999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 146 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 146 G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
|+.+. ...+..+.+.+.++|||+.... |+.+ .+..-+..++........+...+++.+.|+.+||-++
T Consensus 74 ~~~L~----~~Dy~~R~k~IRMiFQDpnts~-----NPRl---~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd 141 (267)
T COG4167 74 DHPLH----FGDYSFRSKRIRMIFQDPNTSL-----NPRL---RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD 141 (267)
T ss_pred Ccccc----ccchHhhhhheeeeecCCcccc-----Chhh---hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc
Confidence 99875 3334444446678888876431 1111 2222222233333344566778899999999999775
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIi 279 (350)
.++-+|+.||-|||||||+|||| ||...+||- |.+.|.
T Consensus 142 ----------------han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 142 ----------------HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred ----------------ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 46889999999999999999999 888888763 999999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
|+. ..+..++|.|+ ||+.|+++|.|.+.+++..|.++.++.++..
T Consensus 206 V~QhlG~iKHi~D~vi-VM~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 206 VTQHIGMIKHISDQVL-VMHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred EechhhHhhhhcccEE-EEecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 998 68889999996 5999999999999999999999998877753
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=258.31 Aligned_cols=193 Identities=16% Similarity=0.103 Sum_probs=135.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.++++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~- 71 (221)
T cd03244 2 DIEFKNVSLRYRPNL-PPV---LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKI- 71 (221)
T ss_pred cEEEEEEEEecCCCC-ccc---ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhHhC-
Confidence 378999999997432 134 666999999999999999999999999999999999 9999999999887410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.... .++.++|++|+... +..++.+|+.+... . ..+++.++++.+++.+.+..-..
T Consensus 72 --~~~~-~~~~i~~~~q~~~l-----------~~~tv~enl~~~~~----~----~~~~~~~~~~~~~l~~~~~~l~~-- 127 (221)
T cd03244 72 --GLHD-LRSRISIIPQDPVL-----------FSGTIRSNLDPFGE----Y----SDEELWQALERVGLKEFVESLPG-- 127 (221)
T ss_pred --CHHH-HhhhEEEECCCCcc-----------ccchHHHHhCcCCC----C----CHHHHHHHHHHhCcHHHHHhccc--
Confidence 0001 12345666665443 22345555542111 1 12334455666665442100000
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~ 287 (350)
+-.+..++.+..||+|||||++||||| |||+++||. +.|||++|| +.+.
T Consensus 128 ----~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~- 202 (221)
T cd03244 128 ----GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII- 202 (221)
T ss_pred ----ccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-
Confidence 000022568899999999999999999 999999873 789999999 4554
Q ss_pred cccEEEEEecCCeEeecCC
Q 018829 288 LTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~ 306 (350)
.||+++ +|++|++++.|+
T Consensus 203 ~~d~i~-~l~~g~~~~~~~ 220 (221)
T cd03244 203 DSDRIL-VLDKGRVVEFDS 220 (221)
T ss_pred hCCEEE-EEECCeEEecCC
Confidence 599996 599999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=290.28 Aligned_cols=201 Identities=11% Similarity=0.110 Sum_probs=148.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-cccEEEECCEeCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 150 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~ 150 (350)
.++|+++|++++|+.+...++ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR---VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKPVK 328 (506)
T ss_pred CceEEEecCcccccccccccc---ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEECC
Confidence 458999999999952111234 666999999999999999999999999999999997 6 8999999999874
Q ss_pred CCccccccccCCCccceeecccc---ccccchhhhhHhhHHHHHhhhhhhhhh-hc---CCCcHHHHHHHHHHHHHcCCC
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELV-IR---RSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~---~~~~~v~q~~~l~~~~v~~~v~~~~~~-~~---~~~~~~~~~~i~~~l~~~gl~ 223 (350)
... .....+..++|++|+.. .+..+ ++.+|+.++... .. ..+....++++.++++.+++.
T Consensus 329 ~~~---~~~~~~~~i~~v~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 395 (506)
T PRK13549 329 IRN---PQQAIAQGIAMVPEDRKRDGIVPVM----------GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK 395 (506)
T ss_pred CCC---HHHHHHCCCEEeCcchhhCCCcCCC----------CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc
Confidence 110 00111234677777642 22222 333444332210 00 012234456788999999996
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEE
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 278 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVI 278 (350)
+. ..++++.+||||||||++||||| ||||++||. |+|||
T Consensus 396 ~~----------------~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 459 (506)
T PRK13549 396 TA----------------SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAII 459 (506)
T ss_pred CC----------------CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEE
Confidence 31 24889999999999999999999 999999874 89999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
++|| +.+.++|||++ +|++|+++..|+++++
T Consensus 460 ~~sHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 460 VISSELPEVLGLSDRVL-VMHEGKLKGDLINHNL 492 (506)
T ss_pred EECCCHHHHHHhCCEEE-EEECCEEEEEeccccC
Confidence 9999 57889999996 5999999998877654
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=258.69 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=141.5
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+.++|++++|+..+ ..++ |+|+||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~~- 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRKP- 76 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECCh-
Confidence 467999999996432 1345 566999999999999999999999999999999986211 589999999988641
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhc--CCCcHHHHHHHHH-HHHHcCCCCcccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR--RSDSSSLRNRMRC-KAHKIGCEPSVIR 228 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~--~~~~~~~~~~i~~-~l~~~gl~~~~~~ 228 (350)
. ..++.+++++|+...+..+ +.+|+. ++..... ..........+.+ .++.+++.+
T Consensus 77 -----~-~~~~~i~~~~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (226)
T cd03234 77 -----D-QFQKCVAYVRQDDILLPGLTVRETLT-----------YTAILRLPRKSSDAIRKKRVEDVLLRDLALTR---- 135 (226)
T ss_pred -----H-HhcccEEEeCCCCccCcCCcHHHHHH-----------HHHHhhcccccchHHHHHHHHHHHHHhhcchh----
Confidence 1 1233567777776555432 444443 3221110 0111222234444 788888876
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEech
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 283 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH~ 283 (350)
+.++.+..|||||+||++||||| |||+++||. +.|+|++||+
T Consensus 136 -------------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 136 -------------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred -------------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45788999999999999999999 999999873 7899999993
Q ss_pred ---HHHhcccEEEEEecCCeEeecC
Q 018829 284 ---DLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 284 ---~~~~~aDri~v~l~~G~iv~~g 305 (350)
.+..+||+++ +|++|++++.|
T Consensus 203 ~~~~~~~~~d~i~-~l~~G~i~~~g 226 (226)
T cd03234 203 PRSDLFRLFDRIL-LLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHhCCEEE-EEeCCEEEecC
Confidence 5789999996 59999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=265.52 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=139.3
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.|+++|++++|+... ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 17 ~~~i~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~~ 87 (257)
T cd03288 17 GGEIKIHDLCVRYENNL-KPV---LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDISK 87 (257)
T ss_pred CceEEEEEEEEEeCCCC-Ccc---eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhhh
Confidence 46799999999997432 123 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHH-----HHHHHHHHHc--CCCC
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR-----NRMRCKAHKI--GCEP 224 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~-----~~i~~~l~~~--gl~~ 224 (350)
. .... .++.++|++|+... +..++.+|+..... ....... ..+.++++.+ +++.
T Consensus 88 ~---~~~~-~~~~i~~v~q~~~l-----------~~~tv~~nl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~ 148 (257)
T cd03288 88 L---PLHT-LRSRLSIILQDPIL-----------FSGSIRFNLDPECK----CTDDRLWEALEIAQLKNMVKSLPGGLDA 148 (257)
T ss_pred C---CHHH-HhhhEEEECCCCcc-----------cccHHHHhcCcCCC----CCHHHHHHHHHHhCcHHHHhhcccccCc
Confidence 0 0001 12245566665433 23344455432110 0011111 1122333333 4444
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVV 280 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIii 280 (350)
..+..+..||+|||||++||||| ||||++||. +.|||++
T Consensus 149 -----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~ 211 (257)
T cd03288 149 -----------------VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTI 211 (257)
T ss_pred -----------------EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 23667889999999999999999 999999873 7999999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|| +.+. .|||++ +|++|++++.|++++++..
T Consensus 212 sh~~~~~~-~~dri~-~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 212 AHRVSTIL-DADLVL-VLSRGILVECDTPENLLAQ 244 (257)
T ss_pred ecChHHHH-hCCEEE-EEECCEEEEeCCHHHHHhc
Confidence 99 4444 499996 5999999999999887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=290.88 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=145.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc--CCCCCCCcccEEEECCEeCC-C
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGD-G 151 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~-~ 151 (350)
|+++|++++|++ . ++ |+++||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++|.... .
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDG-K--EV---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECC-e--Ee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 578999999964 2 35 66699999999999999999999999999999996 7 99999999732100 0
Q ss_pred Ccccc--------------------------c--cccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhc
Q 018829 152 TYFLQ--------------------------E--YTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR 202 (350)
Q Consensus 152 ~~~~~--------------------------~--~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~ 202 (350)
++..| . ....++.+++++|+. ..+++. ++.+|+.++.....
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~----------~~~~~~~tv~~~l~~~~~~~~ 139 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT----------FALYGDDTVLDNVLEALEEIG 139 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccc----------cccCCCCCHHHHHHHHHHHcC
Confidence 00000 0 000112344444431 222222 45566655433221
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC
Q 018829 203 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 273 (350)
Q Consensus 203 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~ 273 (350)
.+..+.++++.++++.+|+.+ .+++++.+||||||||++||||| ||||++||+
T Consensus 140 -~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~ 201 (520)
T TIGR03269 140 -YEGKEAVGRAVDLIEMVQLSH-----------------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201 (520)
T ss_pred -CCHHHHHHHHHHHHHHcCChh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH
Confidence 223445677889999999987 45889999999999999999999 999999874
Q ss_pred -----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 274 -----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 274 -----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
|+|||+||| +.+..+||+++ +|++|+++..|++++++.
T Consensus 202 ~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 202 QTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI-WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE-EEeCCEEeeecCHHHHHH
Confidence 789999999 56778999996 599999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=290.17 Aligned_cols=208 Identities=13% Similarity=0.164 Sum_probs=149.5
Q ss_pred CCCcEEEEEEEEEECC--CceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC-CE
Q 018829 71 IGSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SS 147 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~--~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~ 147 (350)
..++|+++||+++|+. +...++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ |.
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~ 347 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKA---VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGD 347 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCC
Confidence 3468999999999952 111234 667999999999999999999999999999999999 999999996 53
Q ss_pred e---CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 148 V---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 148 ~---i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
+ +... ........++.++|++|+...+..+ ++.+|+.++... ..+....++++.++++.+++.+
T Consensus 348 ~~~~~~~~-~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 348 EWVDMTKP-GPDGRGRAKRYIGILHQEYDLYPHR----------TVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred cccccccc-chhhHHHHhhhEEEEccCcccCCCC----------cHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCC
Confidence 2 2100 0000001122456777765433322 344444432211 1122334567888999999974
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.. ...++++++.+||||||||++||||| ||||++||. |.|||
T Consensus 415 ~~------------~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi 482 (520)
T TIGR03269 415 EK------------AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFI 482 (520)
T ss_pred cc------------chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 10 00035889999999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+||| +.+..+|||++ +|++|++++.|++++++.
T Consensus 483 ~vsHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 483 IVSHDMDFVLDVCDRAA-LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEeCCHHHHHHhCCEEE-EEECCEEEEECCHHHHHh
Confidence 9999 57788999996 599999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=260.80 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=128.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeec-cccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRS 174 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~-d~~~ 174 (350)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .....++.++|+++ +...
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~-----~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWK-----RRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc-----cchhhcccEEEEcCCcccc
Confidence 666999999999999999999999999999999999 999999999987531 00111234566653 3222
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
+..+ ++.+|+.+..... ........+++.++++.+++.+ ..++.+..|||||
T Consensus 107 ~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LS~G~ 158 (236)
T cd03267 107 WWDL----------PVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEE-----------------LLDTPVRQLSLGQ 158 (236)
T ss_pred CCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHHH
Confidence 2222 2333333322111 1122344566778899999986 4588899999999
Q ss_pred HHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecC
Q 018829 255 QYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 255 rQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g 305 (350)
|||++||||| ||||++||. +.|||++|| ..+..+||+++ +|++|++++.|
T Consensus 159 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~-~l~~G~i~~~g 236 (236)
T cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL-VIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE-EEeCCEEEecC
Confidence 9999999999 999999873 689999999 56778999996 59999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=260.10 Aligned_cols=190 Identities=12% Similarity=0.188 Sum_probs=159.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
++++++|+++|++ ..|++| +||++++|++.+++|||||||||++|+|.|++. |++|+|.++|.+++.
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~---isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~~-- 68 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDN---ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLSQ-- 68 (300)
T ss_pred ceEEecchhccCc---eeeecc---eeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchhh--
Confidence 5899999999986 467555 999999999999999999999999999999999 999999999998861
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
..+.++||.+.+..++..+ |.+.+.++. . ..+++.++.++++..+|+++++..
T Consensus 69 ------~~~~rIGyLPEERGLy~k~tv~dql~yla-----------~-LkGm~~~e~~~~~~~wLer~~i~~-------- 122 (300)
T COG4152 69 ------EIKNRIGYLPEERGLYPKMTVEDQLKYLA-----------E-LKGMPKAEIQKKLQAWLERLEIVG-------- 122 (300)
T ss_pred ------hhhhhcccChhhhccCccCcHHHHHHHHH-----------H-hcCCcHHHHHHHHHHHHHhccccc--------
Confidence 1123567777776665544 444433332 2 125677899999999999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..+++..+||.|++|++.+..|+ |||+|+||+ |.|||++|| ..+
T Consensus 123 ---------~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 123 ---------KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ---------cccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 34889999999999999999998 999999986 999999999 789
Q ss_pred HhcccEEEEEecCCeEeecCCcccccc
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.++||+++ .|++|+.|-.|+.+.+-.
T Consensus 194 EeLCD~ll-mL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELCDRLL-MLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHhhhhh-eecCCceEEeccHHHHHH
Confidence 99999996 599999999999877654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=288.44 Aligned_cols=194 Identities=11% Similarity=0.090 Sum_probs=145.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++.|.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 263 ~~~l~~~~l~~~~~~---~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 263 ETVFEVRNVTSRDRK---K-----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISP 329 (510)
T ss_pred CcEEEEeCccccCCC---c-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCC
Confidence 458999999997631 3 677999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeeccc---cccccchhhhhHhhHHHHHhhhhhhhhh----h----cCCCcHHHHHHHHHHHHHc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDT---RSLSDDASDNINMIKLWIMEGVRHGELV----I----RRSDSSSLRNRMRCKAHKI 220 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~---~~~~~~v~q~~~l~~~~v~~~v~~~~~~----~----~~~~~~~~~~~i~~~l~~~ 220 (350)
.. .....++.++|++|+. ..+..+ ++.+|+.++... . ........++++.++++.+
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (510)
T PRK09700 330 RS---PLDAVKKGMAYITESRRDNGFFPNF----------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396 (510)
T ss_pred CC---HHHHHHCCcEEccCccccCCCcCCC----------cHHHHhccccccccccccccccccChHHHHHHHHHHHHhc
Confidence 10 0001123467777763 122222 344444433210 0 0001223345678899999
Q ss_pred CCC-CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------C
Q 018829 221 GCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 274 (350)
Q Consensus 221 gl~-~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g 274 (350)
++. + ..++++.+||||||||++||||| ||||++||. |
T Consensus 397 ~l~~~-----------------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 459 (510)
T PRK09700 397 ALKCH-----------------SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459 (510)
T ss_pred CCCCC-----------------CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 996 5 34889999999999999999999 999999874 8
Q ss_pred ceEEEEec--hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 275 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 275 ~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
.|||++|| +.+..+|||++ +|++|++++.++..+
T Consensus 460 ~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 460 KVILMVSSELPEIITVCDRIA-VFCEGRLTQILTNRD 495 (510)
T ss_pred CEEEEEcCCHHHHHhhCCEEE-EEECCEEEEEecCcc
Confidence 89999999 57889999996 599999998776633
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=255.10 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=133.3
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
+.+++++++|+. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~---~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 88 (224)
T cd03220 23 LGILGRKGEVGE---FWA---LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--- 88 (224)
T ss_pred hhhhhhhhhcCC---eEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh---
Confidence 678888888875 234 677999999999999999999999999999999999 999999999987630
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.+ ....++. ...+.+|+ .++.... .......++++.++++.+++.+
T Consensus 89 ~~--------~~~~~~~----~~tv~enl-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 134 (224)
T cd03220 89 LG--------LGGGFNP----ELTGRENI-----------YLNGRLL-GLSRKEIDEKIDEIIEFSELGD---------- 134 (224)
T ss_pred hc--------ccccCCC----CCcHHHHH-----------HHHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00 0011110 11234443 3322111 1122344556788899999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
.+++.+.+||||||||++||||| |||+++||. ++|||++|| +.+..
T Consensus 135 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 135 -------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999874 689999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 018829 288 LTDRARIRTYLGELLGIP 305 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g 305 (350)
+||+++ +|++|++++.|
T Consensus 208 ~~d~i~-~l~~G~i~~~g 224 (224)
T cd03220 208 LCDRAL-VLEKGKIRFDG 224 (224)
T ss_pred hCCEEE-EEECCEEEecC
Confidence 999996 59999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=262.01 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=140.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++||+++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~-~--~v---l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~---- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQ-R--RV---LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL---- 67 (251)
T ss_pred cEEEEeceEEEECC-c--eE---EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc----
Confidence 57999999999974 2 34 777999999999999999999999999999999999 999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.++|++|+...+..+ ..++.+++.+.. ....+++.++++.+++.+
T Consensus 68 -----------~i~~v~q~~~~~~~l--------~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~-------- 112 (251)
T PRK09544 68 -----------RIGYVPQKLYLDTTL--------PLTVNRFLRLRP--------GTKKEDILPALKRVQAGH-------- 112 (251)
T ss_pred -----------CEEEecccccccccc--------ChhHHHHHhccc--------cccHHHHHHHHHHcCChH--------
Confidence 346777765332111 012223322110 111345678899999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
..++++..||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 113 ---------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 113 ---------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred ---------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45889999999999999999999 999999873 689999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+..+||+++ +|++ ++++.|++++++..
T Consensus 184 i~~~~d~i~-~l~~-~i~~~g~~~~~~~~ 210 (251)
T PRK09544 184 VMAKTDEVL-CLNH-HICCSGTPEVVSLH 210 (251)
T ss_pred HHHhCCEEE-EECC-ceEeeCCHHHHhCC
Confidence 778999996 4864 79999999888654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=251.30 Aligned_cols=179 Identities=19% Similarity=0.178 Sum_probs=131.4
Q ss_pred EEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcccc
Q 018829 77 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 156 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 156 (350)
++|+++.|++ .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.......
T Consensus 1 i~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 1 LKNISKKFGD---KII---LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred CcceEEEECC---EEE---EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccchhh
Confidence 4799999974 235 666999999999999999999999999999999999 99999999999864100000
Q ss_pred ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeee
Q 018829 157 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 236 (350)
Q Consensus 157 ~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~v 236 (350)
.....++.+++++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~----------t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------------ 126 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIENE----------TVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNL------------ 126 (206)
T ss_pred HHHHHHhCeeEEecchhhccCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchh------------
Confidence 0011123456666654433221 4445554432211 1223445667889999999977
Q ss_pred cchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhccc
Q 018829 237 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 290 (350)
Q Consensus 237 v~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aD 290 (350)
..++.+.+||||||||++||||| |||+++||. +.|||++|| .....+||
T Consensus 127 -----~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d 201 (206)
T TIGR03608 127 -----KLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQAD 201 (206)
T ss_pred -----hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcC
Confidence 45889999999999999999999 999999873 789999999 33456899
Q ss_pred EEEE
Q 018829 291 RARI 294 (350)
Q Consensus 291 ri~v 294 (350)
++++
T Consensus 202 ~i~~ 205 (206)
T TIGR03608 202 RVIE 205 (206)
T ss_pred EEEe
Confidence 9953
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=256.39 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=140.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++++|+++.|++ . ++ |+++||+|++|++++|+||||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~~-~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVED-K--AI---LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCC-e--ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 5899999999974 2 34 6669999999999999999999999999999999 47 899999999987641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. ......+..+++++|+...+... .+ ..+...+.+++..... ..........+.+.++++.+++.+.
T Consensus 70 ~---~~~~~~~~~i~~~~q~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~------ 136 (248)
T PRK09580 70 L---SPEDRAGEGIFMAFQYPVEIPGV--SN-QFFLQTALNAVRSYRG-QEPLDRFDFQDLMEEKIALLKMPED------ 136 (248)
T ss_pred C---CHHHHhhcceEEEecCchhccch--hH-HHHHHHhhhhhhcccc-cccchHHHHHHHHHHHHHHcCCChh------
Confidence 1 01111123467777765433221 00 1111111122211000 0001112345667788899998632
Q ss_pred eeeeecchhhhhccCCC-CCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
..++.+. +||||||||++||||| ||||++||. ++|||++|| .
T Consensus 137 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 137 ----------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred ----------hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 2355664 7999999999999999 999999873 789999999 4
Q ss_pred HHHhc-ccEEEEEecCCeEeecCCccc
Q 018829 284 DLLSL-TDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 284 ~~~~~-aDri~v~l~~G~iv~~g~~~~ 309 (350)
.+..+ ||+++ +|++|+++..|+++.
T Consensus 207 ~~~~~~~d~i~-~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 207 ILDYIKPDYVH-VLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHhhhCCEEE-EEECCeEEEeCCHHH
Confidence 55565 89996 599999999988763
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=247.90 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=121.7
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~-~--~~---l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~~---- 65 (180)
T cd03214 1 EVENLSVGYGG-R--TV---LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLAS---- 65 (180)
T ss_pred CeeEEEEEECC-e--ee---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCc----
Confidence 47899999964 2 34 667999999999999999999999999999999999 999999999988741
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
+.....+...++++| +++.+++.+
T Consensus 66 -----------~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~----------- 89 (180)
T cd03214 66 -----------LSPKELARKIAYVPQ----------------------------------ALELLGLAH----------- 89 (180)
T ss_pred -----------CCHHHHHHHHhHHHH----------------------------------HHHHcCCHh-----------
Confidence 100000011111111 677888876
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHh
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~ 287 (350)
..++.+..||||||||++||||| ||||++||. +.|+|++|| +.+.+
T Consensus 90 ------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 90 ------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44788999999999999999999 999999873 579999999 56678
Q ss_pred cccEEEEEecCCeEeecC
Q 018829 288 LTDRARIRTYLGELLGIP 305 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g 305 (350)
+||+++ +|++|++++.|
T Consensus 164 ~~d~~~-~l~~g~i~~~~ 180 (180)
T cd03214 164 YADRVI-LLKDGRIVAQG 180 (180)
T ss_pred hCCEEE-EEECCEEEecC
Confidence 999996 59999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=261.30 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=140.6
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
+++||++. . . |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++.... .
T Consensus 2 ~~~~l~~~----~-~-----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~~~~-~ 64 (248)
T PRK03695 2 QLNDVAVS----T-R-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLEAWS-A 64 (248)
T ss_pred cccccchh----c-e-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecCcCC-H
Confidence 56788874 1 3 677999999999999999999999999999999986 6 899999999875110 0
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
. .. ++.++|++|+...+.. .++.+|+.++... ........+++.++++.+++.+
T Consensus 65 ~--~~-~~~i~~v~q~~~~~~~----------~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~----------- 118 (248)
T PRK03695 65 A--EL-ARHRAYLSQQQTPPFA----------MPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDD----------- 118 (248)
T ss_pred H--HH-hhheEEecccCccCCC----------ccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHh-----------
Confidence 0 01 1234566665433221 1344555443211 1122344567888999999987
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh----------------chhhcCCCC----------------CceEEEEec-
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
..++++..||||||||++||||| |||+++||. ++|||++||
T Consensus 119 ------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~ 192 (248)
T PRK03695 119 ------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192 (248)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 45889999999999999999986 899999863 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+.+.++||+++ +|++|++++.|++++++.
T Consensus 193 ~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 193 LNHTLRHADRVW-LLKQGKLLASGRRDEVLT 222 (248)
T ss_pred HHHHHHhCCEEE-EEECCEEEEECCHHHHhC
Confidence 56789999996 599999999999887754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=251.33 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=135.6
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++|++++|++. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~ 76 (214)
T PRK13543 8 APPLLAAHALAFSRNEE---PV---FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT 76 (214)
T ss_pred CcceEEEeeEEEecCCc---ee---eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence 45689999999999642 34 666999999999999999999999999999999999 99999999998875
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .. .++.++|++|+...+... ++.+|+.+...... ....+.+.++++.+++.+
T Consensus 77 ~------~~-~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~~~----~~~~~~~~~~l~~~~l~~------ 129 (214)
T PRK13543 77 R------GD-RSRFMAYLGHLPGLKADL----------STLENLHFLCGLHG----RRAKQMPGSALAIVGLAG------ 129 (214)
T ss_pred c------hh-hhhceEEeecCcccccCC----------cHHHHHHHHHHhcC----CcHHHHHHHHHHHcCChh------
Confidence 1 11 122356666654433222 33344433221111 113345678899999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++.+..||||||||++||||+ |||+++||. +.|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 130 -----------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred -----------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 45888999999999999999999 999999873 799999999 5
Q ss_pred HHHhcccEEEEEec
Q 018829 284 DLLSLTDRARIRTY 297 (350)
Q Consensus 284 ~~~~~aDri~v~l~ 297 (350)
++.++||++++ +.
T Consensus 199 ~~~~~~~~i~~-l~ 211 (214)
T PRK13543 199 AAPPVRTRMLT-LE 211 (214)
T ss_pred hhhhhcceEEE-Ee
Confidence 78899999954 65
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=244.96 Aligned_cols=219 Identities=17% Similarity=0.151 Sum_probs=162.7
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC-
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG- 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i- 149 (350)
..|++++.++++.|++.. . .++|||++.+||+++|||+||||||||++||++-+. |++|+|.+.-.+-
T Consensus 3 ~~PLL~V~~lsk~Yg~~~---g---c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~ 71 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGK---G---CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQ 71 (258)
T ss_pred CCcceeehhhhhhhCCCc---C---ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCC
Confidence 357899999999998643 3 566999999999999999999999999999999999 9999999865332
Q ss_pred ----CCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 150 ----DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
...+..+.+.+.|...+|+-|.++--..+ | +...||..-+...+...-..+++.+..+|+++.++.
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~V---------SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~ 142 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV---------SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL 142 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeee---------ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCc
Confidence 11111222223333445554444321111 1 222333322221111112356677888999999986
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.. .+..|..+|||||||+.|||-| ||||.+||- +.+++
T Consensus 143 ~R----------------iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 143 DR----------------IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred cc----------------ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 43 4889999999999999999999 999999862 88999
Q ss_pred EEech--HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 279 VVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 279 iiTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
++||+ .+.-+++|.. +|++|++++.|-+++++..|+++|+..+++.+
T Consensus 207 iVTHDl~VarLla~rlm-vmk~g~vve~GLTDrvLDDP~hPYTQLLVSsv 255 (258)
T COG4107 207 IVTHDLAVARLLADRLM-VMKQGQVVESGLTDRVLDDPHHPYTQLLVSSV 255 (258)
T ss_pred EEechhHHHHHhhhcce-eecCCCEeccccccccccCCCCchHHHHHHHh
Confidence 99994 4556899996 59999999999999999999999998777643
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=251.07 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=130.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+.++++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 5 GEIEVENLSVRYAPDL-PPV---LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDISTI 75 (207)
T ss_pred CeEEEEEEEEEeCCCC-ccc---ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhHHC
Confidence 4689999999997432 134 666999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.... .++.++|++|+...+ ..++.+|+.+... .. .+.+.++++ +
T Consensus 76 ---~~~~-~~~~i~~v~q~~~~~-----------~~tv~~~l~~~~~----~~----~~~~~~~l~---~---------- 119 (207)
T cd03369 76 ---PLED-LRSSLTIIPQDPTLF-----------SGTIRSNLDPFDE----YS----DEEIYGALR---V---------- 119 (207)
T ss_pred ---CHHH-HHhhEEEEecCCccc-----------CccHHHHhcccCC----CC----HHHHHHHhh---c----------
Confidence 0001 123466777765433 2244455532110 11 122333333 1
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~ 286 (350)
++.+..|||||+||++||||| |||+++||. ++|+|++|| +.+.
T Consensus 120 -----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 120 -----------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred -----------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 456889999999999999999 999999873 789999999 4554
Q ss_pred hcccEEEEEecCCeEeecCCc
Q 018829 287 SLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~ 307 (350)
. ||+++ +|++|++++.|++
T Consensus 189 ~-~d~v~-~l~~g~i~~~g~~ 207 (207)
T cd03369 189 D-YDKIL-VMDAGEVKEYDHP 207 (207)
T ss_pred h-CCEEE-EEECCEEEecCCC
Confidence 4 99996 5999999988754
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=250.89 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=131.8
Q ss_pred cEEEEEEEEEECC----CceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC--E
Q 018829 74 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS--S 147 (350)
Q Consensus 74 ~l~i~~l~~~y~~----~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G--~ 147 (350)
||+++|++++|+. +....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE---EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCC
Confidence 5899999999963 111245 666999999999999999999999999999999999 9999999984 2
Q ss_pred --eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 148 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 148 --~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
++............++.++|++|+...+..+ ++.+|+.++.... ........+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~ 141 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRV----------SALEVVAEPLLER-GVPREAARARARELLARLNIPER 141 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCc----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchh
Confidence 3320000000011123456777765443322 3334443322211 11223445677889999999752
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIii 280 (350)
+.++++.+||||||||++||||| ||||++||. ++|||++
T Consensus 142 ----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v 205 (224)
T TIGR02324 142 ----------------LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGI 205 (224)
T ss_pred ----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 23678999999999999999999 999999874 7899999
Q ss_pred ec--hHHHhcccEEE
Q 018829 281 TH--GDLLSLTDRAR 293 (350)
Q Consensus 281 TH--~~~~~~aDri~ 293 (350)
|| ..+..+||+++
T Consensus 206 sH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 206 FHDEEVRELVADRVM 220 (224)
T ss_pred eCCHHHHHHhcceeE
Confidence 99 45667999995
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=249.03 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=131.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++|++++|+. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~~- 68 (204)
T PRK13538 1 MLEARNLACERDE---RIL---FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRRQ- 68 (204)
T ss_pred CeEEEEEEEEECC---EEE---EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccc-
Confidence 5899999999964 245 666999999999999999999999999999999999 9999999999887511
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.+++++++...+... ++.+|+.+...... ...++++.++++.+|+.+
T Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~----------tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~--------- 121 (204)
T PRK13538 69 ----RDEYHQDLLYLGHQPGIKTEL----------TALENLRFYQRLHG----PGDDEALWEALAQVGLAG--------- 121 (204)
T ss_pred ----hHHhhhheEEeCCccccCcCC----------cHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHH---------
Confidence 001122445666554333221 44455544322111 123456788999999986
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. +.|||++|| .++.
T Consensus 122 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 122 --------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred --------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 45889999999999999999999 999999873 789999999 5666
Q ss_pred hcccEEE
Q 018829 287 SLTDRAR 293 (350)
Q Consensus 287 ~~aDri~ 293 (350)
.+.+|++
T Consensus 194 ~~~~~~~ 200 (204)
T PRK13538 194 SDKVRKL 200 (204)
T ss_pred cCCceEE
Confidence 7777884
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=283.23 Aligned_cols=201 Identities=18% Similarity=0.201 Sum_probs=155.7
Q ss_pred CcEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
++++++|++++|+.+. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV---LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVAT 74 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCc
Confidence 4799999999996421 1234 677999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....+.....++.++|++|+...+... +.+|+.+ ..... .....+.++++.++++.+|+.+
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~-----------~~~~~-~~~~~~~~~~~~~~l~~lgl~~------ 136 (648)
T PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV-----------PAVYA-GLERKQRLLRAQELLQRLGLED------ 136 (648)
T ss_pred CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 111111112234667888887655443 5555443 11111 1123455677889999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~ 284 (350)
..++.+.+||+||+||++||||| |||+++||. ++|+|++|| ..
T Consensus 137 -----------~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 137 -----------RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred -----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 45889999999999999999999 999999873 799999999 33
Q ss_pred HHhcccEEEEEecCCeEeecCCccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
....|||++ +|++|++++.|++++..
T Consensus 206 ~~~~~d~i~-~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 206 VAAQAERVI-EIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhCCEEE-EEECCEEEeecCccccc
Confidence 445799996 59999999999999886
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=244.76 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=146.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++++.+.-++ . ++ |+++||++.+||+++|+||||||||||+|+++.+.. |++|.+.|.|+++.
T Consensus 4 le~kq~~y~a~~-a--~i---l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs---- 68 (223)
T COG4619 4 LELKQVGYLAGD-A--KI---LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVS---- 68 (223)
T ss_pred hHHHHHHhhcCC-C--ee---ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCcccc----
Confidence 455555543332 2 33 677999999999999999999999999999999999 99999999999986
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.+.+...+....|+.|.+.+|+.+|.+|+-|+...+... ..+..+.++++.+++.+.
T Consensus 69 -----------~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr---~dr~aa~~llar~~l~~~--------- 125 (223)
T COG4619 69 -----------TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR---PDRAAALDLLARFALPDS--------- 125 (223)
T ss_pred -----------ccChHHHHHHHHHHHcCccccccchhhccccchHHhccC---CChHHHHHHHHHcCCchh---------
Confidence 233444444555566666677777777777776654432 255677889999999885
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
++++....|||||+||+||+|-| |||||+||+ +..++.||| +.+.
T Consensus 126 -------~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 126 -------ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198 (223)
T ss_pred -------hhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh
Confidence 47999999999999999999998 999999985 789999999 6778
Q ss_pred hcccEEEEEecCCeEee
Q 018829 287 SLTDRARIRTYLGELLG 303 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~ 303 (350)
+++|+++ .+..|++-+
T Consensus 199 rha~k~i-tl~~G~~~~ 214 (223)
T COG4619 199 RHADKVI-TLQPGHAGE 214 (223)
T ss_pred hhhheEE-EeccCcccc
Confidence 9999995 688887643
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=270.90 Aligned_cols=227 Identities=10% Similarity=0.087 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 48 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 48 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
-+.....+++.+++..+.+..+. ....+.+.+|+|.|.+..++ |+++||++++|+.+||+||||+|
T Consensus 227 ~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~i-----L~~isf~i~~g~tvAiVg~SG~g 301 (497)
T COG5265 227 RQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-----LNGISFTIPLGKTVAIVGESGAG 301 (497)
T ss_pred HHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchh-----hcCccccccCccEEEEEeCCCCc
Confidence 33334455777777777665443 12237899999999876655 77799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 198 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~ 198 (350)
|||++++|.++|+ +++|.|.+||++++ .+..+..+..+++|+|+.-|+..++..|+.++-
T Consensus 302 KsTI~rllfRFyD-----~~sG~I~id~qdir---------------~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr 361 (497)
T COG5265 302 KSTILRLLFRFYD-----VNSGSITIDGQDIR---------------DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR 361 (497)
T ss_pred HHHHHHHHHHHhC-----CcCceEEEcchhHH---------------HhHHHHHHHHhCcCcccceehhhhHHHHHhccC
Confidence 9999999999999 99999999999987 345556667777788888888888888888765
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhc
Q 018829 199 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 269 (350)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts 269 (350)
. ....+.+.++++.+.+.+.+..=+.++..-|++.. -.||||||||+||||++ ||.||
T Consensus 362 ~-------~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg------lklSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 362 P-------DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG------LKLSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred c-------cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe------eeccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 4 23345566667777776644333444444444443 25999999999999998 99999
Q ss_pred CCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 270 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 270 ~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+||- |.|-++|.| -...--||.|+ +|++|+|+|.|+|++++..
T Consensus 429 aldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeii-vl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 429 ALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEII-VLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEE-EeeCCEEEecCcHHHHHHc
Confidence 9873 899999999 34445699995 5999999999999999886
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=280.25 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=145.5
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-cccEEEECCEeCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 150 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~ 150 (350)
..+|+++|++++|+.+....+ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKR---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKPVD 326 (500)
T ss_pred CceEEEeCCcccccccccccc---cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEECC
Confidence 357999999999942111234 666999999999999999999999999999999998 7 7999999998874
Q ss_pred CCccccccccCCCccceeecccc---ccccchhhhhHhhHHHHHhhhhhhhhh-h---cCCCcHHHHHHHHHHHHHcCCC
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELV-I---RRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~---~~~~~v~q~~~l~~~~v~~~v~~~~~~-~---~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
... .....++.++|++|+.. .+..+ ++.+|+.++... . ........++++.++++.+++.
T Consensus 327 ~~~---~~~~~~~~i~~v~q~~~~~~l~~~~----------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 327 IRN---PAQAIRAGIAMVPEDRKRHGIVPIL----------GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCC---HHHHHhCCCEEcCcchhhCCcCCCC----------CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 110 00111335677777642 22222 333343332110 0 0111233456788899999996
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEE
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 278 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVI 278 (350)
.. ..++++.+||||||||++||||| ||||++||. |.|||
T Consensus 394 ~~----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 457 (500)
T TIGR02633 394 TA----------------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457 (500)
T ss_pred CC----------------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEE
Confidence 42 24889999999999999999999 999999874 88999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCc
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
++|| +.+.++||+++ +|++|+++...+.
T Consensus 458 ivsHd~~~~~~~~d~v~-~l~~G~i~~~~~~ 487 (500)
T TIGR02633 458 VVSSELAEVLGLSDRVL-VIGEGKLKGDFVN 487 (500)
T ss_pred EECCCHHHHHHhCCEEE-EEECCEEEEEEcc
Confidence 9999 57889999996 5999999886654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=310.56 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|......+.+..|+.++++.+++.... ....++++|++|+|+.....++ |+|+||+|++|+.++|+||||
T Consensus 577 ~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sG 653 (1495)
T PLN03232 577 LLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT---LSDINLEIPVGSLVAIVGGTG 653 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce---eeeeEEEEcCCCEEEEECCCC
Confidence 4556677777888999999876542211 1235999999999974211123 777999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+++|.|+++ |++|.+.. + +..++|+.|++ .++..++.+||.+
T Consensus 654 SGKSTLl~lLlG~~~-----~~~G~i~~----~------------~~~Iayv~Q~p-----------~Lf~gTIreNI~f 701 (1495)
T PLN03232 654 EGKTSLISAMLGELS-----HAETSSVV----I------------RGSVAYVPQVS-----------WIFNATVRENILF 701 (1495)
T ss_pred CcHHHHHHHHhCCCc-----ccCCCEEE----e------------cCcEEEEcCcc-----------ccccccHHHHhhc
Confidence 999999999999999 99886531 1 11334555554 4555566667766
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. ..+++..++++..++.+++...+++....|++. ...||||||||++||||+ |||
T Consensus 702 g~~--------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~------G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 702 GSD--------FESERYWRAIDVTALQHDLDLLPGRDLTEIGER------GVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred CCc--------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC------CcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 532 123456667777787765555555555655444 557999999999999999 999
Q ss_pred hcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+|+||. ++|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii-~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRII-LVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEE-EEeCCEEEEecCHHHHHhc
Confidence 999873 799999999 45567799995 5999999999999988753
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-32 Score=273.43 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=145.2
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++++++||++.|+.+....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~ 89 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL 89 (549)
T ss_pred ccceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee
Confidence 3468999999999976433345 666999999999999999999999999999999999 99999999996521
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .+ .......+ ++.+|+.+..... .....+..+++.++++.+++.+
T Consensus 90 i--------------~~---~~~l~~~l----------TV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~------ 135 (549)
T PRK13545 90 I--------------AI---SSGLNGQL----------TGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGK------ 135 (549)
T ss_pred E--------------Ee---ccccCCCC----------cHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 0 00 00001111 3334443322111 1223445566778899999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 136 -----------~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 136 -----------FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 45889999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+..+||+++ +|++|++++.|++++++..
T Consensus 205 ~i~~l~DrIi-vL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 205 QVKSFCTKAL-WLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhh
Confidence 7778999996 5999999999999887654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=309.80 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=157.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.|+++||++.|++++ ..+ ++++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 926 ~~~L~I~nLsK~y~~~~-k~a---L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSG-RPA---VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIET 996 (2272)
T ss_pred CceEEEEeEEEEecCCC-ceE---EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcc
Confidence 35799999999996322 245 666999999999999999999999999999999999 999999999999851
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.....++.+++++|+...+..+ |.+++.+ ..... ..+..+.++++.++++.+||.+
T Consensus 997 -----~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f-----------~~~lk-g~~~~~~~~~v~~lL~~vgL~~------ 1053 (2272)
T TIGR01257 997 -----NLDAVRQSLGMCPQHNILFHHLTVAEHILF-----------YAQLK-GRSWEEAQLEMEAMLEDTGLHH------ 1053 (2272)
T ss_pred -----hHHHHhhcEEEEecCCcCCCCCCHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1111234577888876555443 5555443 22211 1223455677889999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 284 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~ 284 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +.
T Consensus 1054 -----------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmde 1122 (2272)
T TIGR01257 1054 -----------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE 1122 (2272)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 56899999999999999999999 999999874 899999999 67
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccC
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+..+||||+ +|++|+++..|++..+...
T Consensus 1123 a~~laDrI~-iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1123 ADLLGDRIA-IISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHhCCEEE-EEECCEEEEecCHHHHHHh
Confidence 888999996 5999999999998877543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=246.82 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=129.5
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (201)
T cd03231 1 LEADELTCERDGR---AL---FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDFQ-- 67 (201)
T ss_pred CEEEEEEEEeCCc---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccc--
Confidence 5789999999742 34 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.++|++|+...+.. .++.+|+.+... ...++++.++++.+++.+
T Consensus 68 ---~~~~~~~i~~~~q~~~~~~~----------~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~---------- 117 (201)
T cd03231 68 ---RDSIARGLLYLGHAPGIKTT----------LSVLENLRFWHA-------DHSDEQVEEALARVGLNG---------- 117 (201)
T ss_pred ---cHHhhhheEEeccccccCCC----------cCHHHHHHhhcc-------cccHHHHHHHHHHcCChh----------
Confidence 01112345566655433211 144455543211 012456778899999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. +.|+|++|| .....
T Consensus 118 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 118 -------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred -------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 45788999999999999999999 999999874 789999999 46678
Q ss_pred cccEEE
Q 018829 288 LTDRAR 293 (350)
Q Consensus 288 ~aDri~ 293 (350)
+|++++
T Consensus 191 ~~~~~~ 196 (201)
T cd03231 191 AGAREL 196 (201)
T ss_pred ccceeE
Confidence 899994
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=279.19 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=145.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 255 ~~~l~~~~l~~~------~-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 255 EVRLKVDNLSGP------G-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT 318 (501)
T ss_pred CcEEEEeCcccC------C-----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 357999999841 2 677999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeecccc---ccccchhhhhHhhHHHHHhhhhhhhhh-h----cCCCcHHHHHHHHHHHHHcCCC
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELV-I----RRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~---~~~~~v~q~~~l~~~~v~~~v~~~~~~-~----~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
.. .....++.++|++|+.. .+..+ ++.+|+.++... . ........++++.++++.+++.
T Consensus 319 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 385 (501)
T PRK10762 319 RS---PQDGLANGIVYISEDRKRDGLVLGM----------SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385 (501)
T ss_pred CC---HHHHHHCCCEEecCccccCCCcCCC----------cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC
Confidence 10 00111235677777642 22222 333444332110 0 0011233456788999999995
Q ss_pred -CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceE
Q 018829 224 -PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 277 (350)
Q Consensus 224 -~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TV 277 (350)
+ ..++++.+||||||||++||||| ||||++||. |.||
T Consensus 386 ~~-----------------~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tv 448 (501)
T PRK10762 386 TP-----------------SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSI 448 (501)
T ss_pred CC-----------------CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEE
Confidence 4 34889999999999999999999 999999874 7899
Q ss_pred EEEec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 278 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 278 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
|++|| +.+..+||+++ +|++|+++..++++++
T Consensus 449 iivtHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 449 ILVSSEMPEVLGMSDRIL-VMHEGRISGEFTREQA 482 (501)
T ss_pred EEEcCCHHHHHhhCCEEE-EEECCEEEEEeccccC
Confidence 99999 67889999996 5999999998887654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=277.05 Aligned_cols=201 Identities=14% Similarity=0.158 Sum_probs=143.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|+++.|. ++ |+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 248 ~~~i~~~~l~~~~~-----~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 248 EVILEVRNLTSLRQ-----PS---IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred CcEEEEeCcccccC-----cc---cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 45899999999752 23 777999999999999999999999999999999999 999999999988752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .....++.++|++|+.... + ++++......++.+++.+.............++.+.++++.+++...
T Consensus 315 ~~---~~~~~~~~i~~~~q~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 383 (491)
T PRK10982 315 HN---ANEAINHGFALVTEERRST-G-IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP------ 383 (491)
T ss_pred CC---HHHHHHCCCEEcCCchhhC-C-cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC------
Confidence 11 1111123467777764211 0 11111111112223332211100111223445677888999999532
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 384 ----------~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 384 ----------GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred ----------CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 24889999999999999999999 999999874 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
+..+|||++ +|++|+++..++.
T Consensus 454 ~~~~~d~v~-~l~~g~i~~~~~~ 475 (491)
T PRK10982 454 LLGITDRIL-VMSNGLVAGIVDT 475 (491)
T ss_pred HHhhCCEEE-EEECCEEEEEEcc
Confidence 889999996 5999999976655
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-32 Score=307.40 Aligned_cols=220 Identities=14% Similarity=0.092 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhccc--C----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRT--R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~--~----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|......+....|+.++++.+..... . ..+.++++|++|+|+.....++ |+|+||+|++|+.++|+||||
T Consensus 577 ~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sG 653 (1622)
T PLN03130 577 LITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT---LSNINLDVPVGSLVAIVGSTG 653 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce---eeceeEEecCCCEEEEECCCC
Confidence 456667777778899999976543211 1 1236999999999964321234 677999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcc-cEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
||||||+++|.|.++ |++ |+|.+.+ +++|+.|++..+. .++.+||.
T Consensus 654 SGKSTLl~lLlG~~~-----~~~GG~I~l~~-----------------~Iayv~Q~p~Lfn-----------gTIreNI~ 700 (1622)
T PLN03130 654 EGKTSLISAMLGELP-----PRSDASVVIRG-----------------TVAYVPQVSWIFN-----------ATVRDNIL 700 (1622)
T ss_pred CCHHHHHHHHHHhhc-----cCCCceEEEcC-----------------eEEEEcCccccCC-----------CCHHHHHh
Confidence 999999999999999 999 8998643 3356666655554 45556665
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ..+++..++++..++.+++...+++...+|++ ....||||||||++||||+ ||
T Consensus 701 fg~~--------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe------~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 701 FGSP--------FDPERYERAIDVTALQHDLDLLPGGDLTEIGE------RGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred CCCc--------ccHHHHHHHHHHhCcHHHHHhCCCcccccccC------CCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 5432 13456777788888876655555555554444 4557999999999999999 99
Q ss_pred hhcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|+|+||. ++|+|+||| -.....||+|+ +|++|++++.|+++++++.
T Consensus 767 ptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii-~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRII-LVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEE-EEeCCEEEEeCCHHHHHhc
Confidence 9999873 799999999 45567799995 5999999999999988753
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=245.07 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=127.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (198)
T TIGR01189 1 LAARNLACSRGE---RML---FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQ-- 67 (198)
T ss_pred CEEEEEEEEECC---EEE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccc--
Confidence 578999999974 245 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
. ...++.++|.+|+...+.. .++.+|+.+...... .. ++++.++++.+++.+
T Consensus 68 -~--~~~~~~i~~~~q~~~~~~~----------~tv~~~l~~~~~~~~---~~--~~~~~~~l~~~~l~~---------- 119 (198)
T TIGR01189 68 -R--DEPHRNILYLGHLPGLKPE----------LSALENLHFWAAIHG---GA--QRTIEDALAAVGLTG---------- 119 (198)
T ss_pred -h--HHhhhheEEeccCcccccC----------CcHHHHHHHHHHHcC---Cc--HHHHHHHHHHcCCHH----------
Confidence 0 1112244566554333221 144455443322111 11 345778899999987
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEechHHHhcc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLSLT 289 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH~~~~~~a 289 (350)
..++++.+||||||||++||||+ ||||++||. +.|+|++||+...-.|
T Consensus 120 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 120 -------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE 192 (198)
T ss_pred -------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 45889999999999999999999 999999873 7899999995554557
Q ss_pred cEE
Q 018829 290 DRA 292 (350)
Q Consensus 290 Dri 292 (350)
+++
T Consensus 193 ~~~ 195 (198)
T TIGR01189 193 ARE 195 (198)
T ss_pred eEE
Confidence 777
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=305.49 Aligned_cols=197 Identities=10% Similarity=0.073 Sum_probs=158.5
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
..+|+++||+++|+.+. ..+ |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~-~~a---L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTS-SPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILT 2005 (2272)
T ss_pred CceEEEEEEEEEECCCC-ceE---EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcc
Confidence 45799999999997432 245 666999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.....++.++|++|....+..+ +.|++.++. .. +..+.+..++.+.++++.+++.+
T Consensus 2006 -----~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a-----------~l-~g~~~~~~~~~v~~lLe~lgL~~------ 2062 (2272)
T TIGR01257 2006 -----NISDVHQNMGYCPQFDAIDDLLTGREHLYLYA-----------RL-RGVPAEEIEKVANWSIQSLGLSL------ 2062 (2272)
T ss_pred -----hHHHHhhhEEEEeccccCCCCCCHHHHHHHHH-----------Hh-cCCCHHHHHHHHHHHHHHcCCHH------
Confidence 1111234678888876655444 555554422 11 12233445667888999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++++.+||||||||++||+|| ||||++||+ |+|||++|| +
T Consensus 2063 -----------~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 -----------YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999874 899999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++..+|||++ +|++|+++..|+++++..
T Consensus 2132 e~e~lcDrV~-IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2132 ECEALCTRLA-IMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHH
Confidence 8889999996 599999999999988744
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-32 Score=240.50 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=115.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|+... .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~-~- 69 (178)
T cd03247 1 LSINNVSFSYPEQE-QQV---LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVSD-L- 69 (178)
T ss_pred CEEEEEEEEeCCCC-ccc---eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHHH-H-
Confidence 57899999996532 123 777999999999999999999999999999999999 999999999987641 0
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
. ...++.++|++|+ ..++..++.+|+
T Consensus 70 ~---~~~~~~i~~~~q~-----------~~~~~~tv~~~i---------------------------------------- 95 (178)
T cd03247 70 E---KALSSLISVLNQR-----------PYLFDTTLRNNL---------------------------------------- 95 (178)
T ss_pred H---HHHHhhEEEEccC-----------CeeecccHHHhh----------------------------------------
Confidence 0 0011233444443 222221222211
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHhc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~~ 288 (350)
+..|||||+||++||||| |||+++||. +.|||++|| +.+ ..
T Consensus 96 ------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~ 162 (178)
T cd03247 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-EH 162 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-Hh
Confidence 347999999999999999 999999873 789999999 455 46
Q ss_pred ccEEEEEecCCeEeecC
Q 018829 289 TDRARIRTYLGELLGIP 305 (350)
Q Consensus 289 aDri~v~l~~G~iv~~g 305 (350)
||+++ +|++|++++.|
T Consensus 163 ~d~~~-~l~~g~i~~~~ 178 (178)
T cd03247 163 MDKIL-FLENGKIIMQG 178 (178)
T ss_pred CCEEE-EEECCEEEecC
Confidence 99996 59999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=242.65 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=127.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (207)
T PRK13539 2 MLEGEDLACVRGG---RVL---FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDD-- 68 (207)
T ss_pred EEEEEeEEEEECC---eEE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcc--
Confidence 6899999999974 235 666999999999999999999999999999999999 999999999987531
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
. . .+..+++++++...+... ++.+|+.+...... . ..+++.++++.+|+.+
T Consensus 69 -~---~-~~~~~~~~~~~~~~~~~~----------tv~~~l~~~~~~~~---~--~~~~~~~~l~~~~l~~--------- 119 (207)
T PRK13539 69 -P---D-VAEACHYLGHRNAMKPAL----------TVAENLEFWAAFLG---G--EELDIAAALEAVGLAP--------- 119 (207)
T ss_pred -h---h-hHhhcEEecCCCcCCCCC----------cHHHHHHHHHHhcC---C--cHHHHHHHHHHcCCHH---------
Confidence 1 1 222446666544333222 33333332211111 1 1234778899999976
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 120 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 120 --------LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred --------HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 45788999999999999999999 999999873 799999999 3444
Q ss_pred hcccEEEEEec
Q 018829 287 SLTDRARIRTY 297 (350)
Q Consensus 287 ~~aDri~v~l~ 297 (350)
. |+++ .++
T Consensus 192 ~--~~~~-~~~ 199 (207)
T PRK13539 192 G--AREL-DLG 199 (207)
T ss_pred c--CcEE-eec
Confidence 3 8884 353
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=249.67 Aligned_cols=186 Identities=13% Similarity=0.058 Sum_probs=139.1
Q ss_pred cEEEEEEEEEECCC-----------------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCC
Q 018829 74 LTDAKNKILSYTPG-----------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 136 (350)
Q Consensus 74 ~l~i~~l~~~y~~~-----------------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~ 136 (350)
.++++||++.|... ....+ |+++||+|++||+++|+||||||||||+++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~----- 75 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFA---LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS----- 75 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----
Confidence 47899999888531 11345 566999999999999999999999999999999999
Q ss_pred CcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHH
Q 018829 137 SERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK 216 (350)
Q Consensus 137 p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~ 216 (350)
|++|+|.++|... +..+.......+ ++.+|+.++.... ........+.+..+
T Consensus 76 p~~G~I~~~g~~~-----------------~~~~~~~~~~~~----------tv~enl~~~~~~~-~~~~~~~~~~~~~~ 127 (264)
T PRK13546 76 PTVGKVDRNGEVS-----------------VIAISAGLSGQL----------TGIENIEFKMLCM-GFKRKEIKAMTPKI 127 (264)
T ss_pred CCceEEEECCEEe-----------------EEecccCCCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 9999999998521 111111111111 2233333221111 11223445566778
Q ss_pred HHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC--------------
Q 018829 217 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 273 (350)
Q Consensus 217 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------- 273 (350)
++.+++.+ ..++.+.+|||||+||++||||| |||+++||.
T Consensus 128 l~~~~l~~-----------------~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~ 190 (264)
T PRK13546 128 IEFSELGE-----------------FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK 190 (264)
T ss_pred HHHcCCch-----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 88889887 45889999999999999999999 999999873
Q ss_pred --CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 274 --DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 274 --g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
++|||++|| ..+..+||+++ +|++|++++.|++++++..
T Consensus 191 ~~g~tiIiisH~~~~i~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 191 EQNKTIFFVSHNLGQVRQFCTKIA-WIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HCCCEEEEEcCCHHHHHHHcCEEE-EEECCEEEEeCCHHHHHHH
Confidence 789999999 56778999996 5999999999999887664
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=244.22 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=121.1
Q ss_pred EEEEEEEEEECCCc--eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 75 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 75 l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++||+++|++.. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~i---l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g-~---- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT---LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG-S---- 67 (204)
T ss_pred CEEeEEEEecCCCCccccce---eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC-E----
Confidence 57999999997542 0124 677999999999999999999999999999999999 9999999998 1
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
++|++|++..+ ..++.+|+.++... .. +...++++.+++...+.....
T Consensus 68 ------------i~~~~q~~~l~-----------~~t~~enl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~- 115 (204)
T cd03250 68 ------------IAYVSQEPWIQ-----------NGTIRENILFGKPF----DE----ERYEKVIKACALEPDLEILPD- 115 (204)
T ss_pred ------------EEEEecCchhc-----------cCcHHHHhccCCCc----CH----HHHHHHHHHcCcHHHHHhccC-
Confidence 25666665433 22455555543221 11 112223333333221100000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+..+..++.+.+||+|||||++||||| |||+++||. +.|||++|| ..
T Consensus 116 -----~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 116 -----GDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred -----cccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 000123567889999999999999999 999999863 689999999 45
Q ss_pred HHhcccEEEEEecCCe
Q 018829 285 LLSLTDRARIRTYLGE 300 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~ 300 (350)
+.. ||+++ +|++|+
T Consensus 191 ~~~-~d~i~-~l~~G~ 204 (204)
T cd03250 191 LPH-ADQIV-VLDNGR 204 (204)
T ss_pred Hhh-CCEEE-EEeCCC
Confidence 555 99996 598884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=274.93 Aligned_cols=192 Identities=13% Similarity=0.060 Sum_probs=143.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+.++++|+++. .+ ++++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 256 ~~l~~~~~~~~-------~~---l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 256 VRLRLDGLKGP-------GL---REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIR 320 (501)
T ss_pred cEEEEeccccC-------Cc---ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCC
Confidence 46899999832 13 677999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCccceeecccc---ccccchhhhhHhhHHHHHhhhhhhhhhhc---C--CCcHHHHHHHHHHHHHcCCC-
Q 018829 153 YFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELVIR---R--SDSSSLRNRMRCKAHKIGCE- 223 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~---~~~~~v~q~~~l~~~~v~~~v~~~~~~~~---~--~~~~~~~~~i~~~l~~~gl~- 223 (350)
. .....++.++|++|+.. .+..+ ++.+|+.++..... . ......++.+.++++.+++.
T Consensus 321 ~---~~~~~~~~i~~~~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 387 (501)
T PRK11288 321 S---PRDAIRAGIMLCPEDRKAEGIIPVH----------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 (501)
T ss_pred C---HHHHHhCCCEEcCcCHhhCCCcCCC----------CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc
Confidence 0 01111234567777642 22211 34444443221100 0 11223345678899999995
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEE
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 278 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVI 278 (350)
+ ..++++.+||||||||++||||| ||||++||. |.|||
T Consensus 388 ~-----------------~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 450 (501)
T PRK11288 388 P-----------------SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450 (501)
T ss_pred C-----------------CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEE
Confidence 4 34889999999999999999999 999999873 88999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
++|| +.+.++||+++ +|++|++++.|+++++
T Consensus 451 ivsHd~~~~~~~~d~i~-~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 451 FVSSDLPEVLGVADRIV-VMREGRIAGELAREQA 483 (501)
T ss_pred EECCCHHHHHhhCCEEE-EEECCEEEEEEccccC
Confidence 9999 67889999996 5999999999887654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=273.10 Aligned_cols=196 Identities=12% Similarity=0.107 Sum_probs=145.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++|++++|++ . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~i~~ls~~~~~-~--~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~----- 64 (530)
T PRK15064 1 MLSTANITMQFGA-K--PL---FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPNE----- 64 (530)
T ss_pred CEEEEEEEEEeCC-c--Ee---EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-----
Confidence 5899999999964 2 34 666999999999999999999999999999999999 999999998721
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHH------hhhhhhhh---------------hhcCCCcHHHHH
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRHGEL---------------VIRRSDSSSLRN 211 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~------~~v~~~~~---------------~~~~~~~~~~~~ 211 (350)
.++|++|+...+..+ +.+++.+...... +.+. ... ..........++
T Consensus 65 ----------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 65 ----------RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY-ALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred ----------EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh-cccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 246777766554443 6666543211000 0000 000 000000112345
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~--------- 273 (350)
++.++++.+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 134 ~~~~~l~~~gl~~~----------------~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 197 (530)
T PRK15064 134 RAGELLLGVGIPEE----------------QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV 197 (530)
T ss_pred HHHHHHHhCCCChh----------------HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH
Confidence 67889999999752 12567899999999999999999 999999984
Q ss_pred ----CceEEEEec--hHHHhcccEEEEEecCCeE-eecCCccccccC
Q 018829 274 ----DKPVVVVTH--GDLLSLTDRARIRTYLGEL-LGIPPAKQIFDI 313 (350)
Q Consensus 274 ----g~TVIiiTH--~~~~~~aDri~v~l~~G~i-v~~g~~~~l~~~ 313 (350)
+.|||+||| +.+..+||+++ +|++|++ +..|++++++..
T Consensus 198 l~~~~~tiiivsHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 198 LNERNSTMIIISHDRHFLNSVCTHMA-DLDYGELRVYPGNYDEYMTA 243 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEE-EEeCCEEEEecCCHHHHHHH
Confidence 889999999 57789999996 5999999 478888877643
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=260.47 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=136.5
Q ss_pred EEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHH
Q 018829 111 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWI 190 (350)
Q Consensus 111 IvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v 190 (350)
|+||||||||||+++|+|+++ |++|+|.++|+++.. ....++.++|++|+...+..+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~------~~~~~~~i~~v~q~~~l~~~~----------tv 59 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTN------VPPHLRHINMVFQSYALFPHM----------TV 59 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC------CCHHHCCEEEEecCccccCCC----------cH
Confidence 689999999999999999999 999999999998751 111123456666665444322 45
Q ss_pred HhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------
Q 018829 191 MEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------ 264 (350)
Q Consensus 191 ~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------ 264 (350)
.+|+.++.... ..+....++++.++++.+++.+ ++++++.+||||||||++|||||
T Consensus 60 ~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 60 EENVAFGLKMR-KVPRAEIKPRVLEALRLVQLEE-----------------FADRKPHQLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCcc-----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 55655543321 1223445667889999999987 56899999999999999999999
Q ss_pred ---chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 265 ---NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 265 ---DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
|||+++||. ++|+|++|| +++..+|||++ +|++|++++.|++++++..|...+.+.+
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~-vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 200 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA-IMRKGKIAQIGTPEEIYEEPANLFVARF 200 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHHh
Confidence 999999873 789999999 57788999996 5999999999999999998877666655
Q ss_pred HH
Q 018829 323 LI 324 (350)
Q Consensus 323 ~~ 324 (350)
+.
T Consensus 201 ~~ 202 (325)
T TIGR01187 201 IG 202 (325)
T ss_pred cC
Confidence 54
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=275.02 Aligned_cols=193 Identities=11% Similarity=0.036 Sum_probs=143.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|+++ . . |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 266 ~~~l~~~~l~~---~---~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTG---E---G-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCC---C---C-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 45899999983 1 2 677999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeecccc---ccccchhhhhHhhHHHHHhhhhhhhh--hhcCCCcHHHHHHHHHHHHHcCCC-Cc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCE-PS 225 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~---~~~~~v~q~~~l~~~~v~~~v~~~~~--~~~~~~~~~~~~~i~~~l~~~gl~-~~ 225 (350)
.. .....+..++|++|+.. .+..+ ++.+|+..... ..........++.+.++++.+++. .
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~l~~~~----------t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~- 395 (510)
T PRK15439 330 LS---TAQRLARGLVYLPEDRQSSGLYLDA----------PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN- 395 (510)
T ss_pred CC---HHHHHhCCcEECCCChhhCCccCCC----------cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC-
Confidence 10 01111234677777531 22221 22233321100 000011123345678899999997 5
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIii 280 (350)
.+++++.+||||||||++||||| ||||++||. |.|||++
T Consensus 396 ----------------~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIiv 459 (510)
T PRK15439 396 ----------------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI 459 (510)
T ss_pred ----------------CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEE
Confidence 34889999999999999999999 999999874 7899999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
|| +.+.++|||++ +|++|+++..|+++++.
T Consensus 460 sHd~~~i~~~~d~i~-~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 460 SSDLEEIEQMADRVL-VMHQGEISGALTGAAIN 491 (510)
T ss_pred CCCHHHHHHhCCEEE-EEECCEEEEEEccccCC
Confidence 99 67889999996 59999999988776553
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=237.57 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=109.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+... ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 70 (173)
T cd03246 1 LEVENVSFRYPGAE-PPV---LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQWD- 70 (173)
T ss_pred CEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcccCC-
Confidence 47899999996432 124 677999999999999999999999999999999999 99999999998874100
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
... .++.++|++|+ ..+++.++.+|
T Consensus 71 --~~~-~~~~i~~~~q~-----------~~~~~~tv~~~----------------------------------------- 95 (173)
T cd03246 71 --PNE-LGDHVGYLPQD-----------DELFSGSIAEN----------------------------------------- 95 (173)
T ss_pred --HHH-HHhheEEECCC-----------CccccCcHHHH-----------------------------------------
Confidence 000 11233444443 22211111110
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSL 288 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~ 288 (350)
+ ||||||||++||||| ||||++||. ++|+|++|| ......
T Consensus 96 -------l-------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 96 -------I-------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred -------C-------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 1 999999999999999 999999874 789999999 233367
Q ss_pred ccEEEEEecCCeE
Q 018829 289 TDRARIRTYLGEL 301 (350)
Q Consensus 289 aDri~v~l~~G~i 301 (350)
||+++ +|++|++
T Consensus 162 ~d~v~-~l~~G~i 173 (173)
T cd03246 162 ADRIL-VLEDGRV 173 (173)
T ss_pred CCEEE-EEECCCC
Confidence 99996 5999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=242.88 Aligned_cols=170 Identities=12% Similarity=0.132 Sum_probs=127.8
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++|++++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 1 ml~~~~l~~~~~~-~--~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~-- 67 (200)
T PRK13540 1 MLDVIELDFDYHD-Q--PL---LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKK-- 67 (200)
T ss_pred CEEEEEEEEEeCC-e--eE---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcccc--
Confidence 5899999999974 2 34 677999999999999999999999999999999999 999999999987641
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.....++.++|++|+...+... ++.+|+.++... . . .+..+.++++.+++..
T Consensus 68 ---~~~~~~~~i~~~~q~~~~~~~~----------tv~~~~~~~~~~--~--~--~~~~~~~~l~~~~l~~--------- 119 (200)
T PRK13540 68 ---DLCTYQKQLCFVGHRSGINPYL----------TLRENCLYDIHF--S--P--GAVGITELCRLFSLEH--------- 119 (200)
T ss_pred ---CHHHHHhheEEeccccccCcCC----------CHHHHHHHHHhc--C--c--chHHHHHHHHHcCCch---------
Confidence 0011123456666654433221 344444433211 0 1 1246778899999876
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~ 287 (350)
..++.+.+|||||+||++||||+ |||+++||. +.|+|++|| .....
T Consensus 120 --------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 120 --------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred --------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 34778899999999999999999 999999873 789999999 44456
Q ss_pred cccEE
Q 018829 288 LTDRA 292 (350)
Q Consensus 288 ~aDri 292 (350)
.||..
T Consensus 192 ~~d~~ 196 (200)
T PRK13540 192 KADYE 196 (200)
T ss_pred ccchh
Confidence 68866
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=273.92 Aligned_cols=181 Identities=12% Similarity=0.116 Sum_probs=141.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~---- 382 (530)
T PRK15064 318 NALEVENLTKGFDN-G--PL---FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA---- 382 (530)
T ss_pred ceEEEEeeEEeeCC-c--ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce----
Confidence 48999999999964 2 34 666999999999999999999999999999999999 999999998732
Q ss_pred ccccccccCCCccceeecccc-cc-ccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTR-SL-SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~-~~-~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.++|++|+.. .+ ..+ +.+ ++.+.. . ....++++.++++.+++...
T Consensus 383 -----------~i~~~~q~~~~~~~~~~t~~~-----------~~~~~~----~--~~~~~~~~~~~l~~~~l~~~---- 430 (530)
T PRK15064 383 -----------NIGYYAQDHAYDFENDLTLFD-----------WMSQWR----Q--EGDDEQAVRGTLGRLLFSQD---- 430 (530)
T ss_pred -----------EEEEEcccccccCCCCCcHHH-----------HHHHhc----c--CCccHHHHHHHHHHcCCChh----
Confidence 3467777653 12 111 333 222100 0 01224567888999999521
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHH
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 285 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 431 ------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 431 ------------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred ------------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999984 569999999 577
Q ss_pred HhcccEEEEEecCCeEe-ecCCccccccC
Q 018829 286 LSLTDRARIRTYLGELL-GIPPAKQIFDI 313 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv-~~g~~~~l~~~ 313 (350)
..+||+++ +|++|+++ ..|+++++++.
T Consensus 499 ~~~~d~i~-~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 499 SSLATRII-EITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHhCCEEE-EEECCeEEEcCCCHHHHHHH
Confidence 88999996 59999998 77888776543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=240.00 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=119.7
Q ss_pred cEEEEEEEEEECCCc---eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc--CCCCCCCcccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~---~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~ 148 (350)
.++++|++++|+... ..++ |+++||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~---l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~ 74 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL---LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRP 74 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc---eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEe
Confidence 589999999996420 1234 66699999999999999999999999999999999 8 999999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccc
Q 018829 149 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 228 (350)
Q Consensus 149 i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 228 (350)
+.. . ..++.+++++|+...+.. .++.+|+.++. .
T Consensus 75 ~~~------~-~~~~~i~~~~q~~~~~~~----------~t~~~~i~~~~-------------------------~---- 108 (194)
T cd03213 75 LDK------R-SFRKIIGYVPQDDILHPT----------LTVRETLMFAA-------------------------K---- 108 (194)
T ss_pred Cch------H-hhhheEEEccCcccCCCC----------CcHHHHHHHHH-------------------------H----
Confidence 751 0 112244555555332211 13333332100 0
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
. . +||||||||++||||| |||+++||. ++|+|++||
T Consensus 109 -------------~-~----~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 109 -------------L-R----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred -------------h-c----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 0 1 7999999999999999 999999873 789999999
Q ss_pred -h-HHHhcccEEEEEecCCeEeecC
Q 018829 283 -G-DLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 283 -~-~~~~~aDri~v~l~~G~iv~~g 305 (350)
. .+..+||+++ +|++|+++..|
T Consensus 171 ~~~~~~~~~d~v~-~l~~G~i~~~~ 194 (194)
T cd03213 171 PSSEIFELFDKLL-LLSQGRVIYFG 194 (194)
T ss_pred chHHHHHhcCEEE-EEeCCEEEecC
Confidence 3 4668899996 59999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=251.11 Aligned_cols=203 Identities=19% Similarity=0.130 Sum_probs=142.1
Q ss_pred HHHHHHHHccchhcccC-----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 54 DAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 54 ~~~~~~~l~~~~~~~~~-----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
...++++|..+++.... ..+.|+++|+++. . . .+ |+++||+|++||+++|+||||||||||+++|+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~-~--~--~v---L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 14 DEGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV-G--A--PV---LKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHHhcccccccccccCCCCCeEEEEEEEEe-c--c--cc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34788899887764332 3456999999985 2 2 23 777999999999999999999999999999999
Q ss_pred ccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHH
Q 018829 129 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 208 (350)
Q Consensus 129 l~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~ 208 (350)
+++ |++|+|.++|. ++|++|+...+.. ++.+|+.++... . .
T Consensus 86 l~~-----p~~G~I~i~g~-----------------i~yv~q~~~l~~~-----------tv~enl~~~~~~----~-~- 126 (282)
T cd03291 86 ELE-----PSEGKIKHSGR-----------------ISFSSQFSWIMPG-----------TIKENIIFGVSY----D-E- 126 (282)
T ss_pred CCC-----CCCcEEEECCE-----------------EEEEeCccccccc-----------CHHHHhhccccc----C-H-
Confidence 999 99999999872 2566666443322 334444432210 0 0
Q ss_pred HHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------
Q 018829 209 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------ 273 (350)
Q Consensus 209 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------ 273 (350)
..+.++++.+++.+.+....... .+..++.+..||||||||++||||| |||+++||.
T Consensus 127 --~~~~~~l~~~~l~~~l~~~~~~~------~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l 198 (282)
T cd03291 127 --YRYKSVVKACQLEEDITKFPEKD------NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198 (282)
T ss_pred --HHHHHHHHHhCCHHHHHhccccc------cceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence 11222333344332110000000 0022456789999999999999999 999999873
Q ss_pred ----------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 274 ----------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 274 ----------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.|||++|| ..+ ..||+++ +|++|++++.|+++++...
T Consensus 199 ~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~-~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 199 FESCVCKLMANKTRILVTSKMEHL-KKADKIL-ILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHHhhCCCEEEEEeCChHHH-HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 789999999 344 5799996 5999999999999888654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=273.37 Aligned_cols=197 Identities=12% Similarity=0.085 Sum_probs=145.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~~~--~i---l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~---- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKK--QI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG---- 69 (556)
T ss_pred cEEEEEeeEEEEeCCCC--ee---eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC----
Confidence 46899999999997222 34 666999999999999999999999999999999999 99999998641
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHH------hhhhh--hhh----------------hhcCCCc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRH--GEL----------------VIRRSDS 206 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~------~~v~~--~~~----------------~~~~~~~ 206 (350)
..++|++|++..+..+ +.+++.+...... ..... ... .......
T Consensus 70 -----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 70 -----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred -----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 1357888887655443 6676654211100 00000 000 0000000
Q ss_pred HHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----
Q 018829 207 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 273 (350)
Q Consensus 207 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---- 273 (350)
.+..+++.++++.+|+.. .++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~~~~~~~l~~~gl~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~ 200 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPP------------------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200 (556)
T ss_pred cchHHHHHHHHHhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHH
Confidence 122456788899999953 2788999999999999999999 999999985
Q ss_pred ---------CceEEEEec--hHHHhcccEEEEEecCCeEe-ecCCcccccc
Q 018829 274 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 312 (350)
Q Consensus 274 ---------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 312 (350)
+.|||+||| +.+..+||+|+ +|++|+++ ..|+.+++..
T Consensus 201 ~l~~~L~~~~~tviiisHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL-ELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE-EEeCCEEEEecCCHHHHHH
Confidence 569999999 57788999996 59999986 7788776544
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=239.94 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=114.6
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ........++.++|++|+...
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~- 79 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDY--SRKGLLERRQRVGLVFQDPDD- 79 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEccc--cccchHHHHhhEEEEecChhh-
Confidence 666999999999999999999999999999999999 999999999988741 000111112345677766421
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 255 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 255 (350)
.++..++.+|+.++.... ..+.....+++.++++.+++.+ ..++++.+||||||
T Consensus 80 --------~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~ 133 (190)
T TIGR01166 80 --------QLFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASG-----------------LRERPTHCLSGGEK 133 (190)
T ss_pred --------ccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchh-----------------hhhCChhhCCHHHH
Confidence 011124445554432211 1223345567888999999987 45889999999999
Q ss_pred HHHHHHHHh---------chhhcCCCC----------------CceEEEEech
Q 018829 256 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 283 (350)
Q Consensus 256 QRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH~ 283 (350)
||++||||| ||||++||. ++|||++||+
T Consensus 134 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 134 KRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999999999 999999873 7899999994
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=245.72 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=130.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchh
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 180 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~ 180 (350)
|+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. . .++.++|++|+...+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~------~---~~~~i~~v~q~~~~~~~--- 63 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPG------K---GWRHIGYVPQRHEFAWD--- 63 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccch------H---hhCcEEEecccccccCC---
Confidence 5789999999999999999999999999999 99999999998753 1 12346777776543210
Q ss_pred hhhHhhHHHHHhhhhhhhhhh-c--CCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHH
Q 018829 181 DNINMIKLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 257 (350)
Q Consensus 181 q~~~l~~~~v~~~v~~~~~~~-~--~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 257 (350)
+..++.+|+.++.... . .......++++.++++.+++.+ ..++++.+||||||||
T Consensus 64 -----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~qr 121 (223)
T TIGR03771 64 -----FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-----------------LADRPVGELSGGQRQR 121 (223)
T ss_pred -----CCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-----------------hhcCChhhCCHHHHHH
Confidence 1113344444332100 0 0112234566888999999987 4588999999999999
Q ss_pred HHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 258 QIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 258 vaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
++||||| ||||++||. ++|||++|| +.+.++||++++ + +|+++..|+++++
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~-l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL-L-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE-E-CCEEEeecCHHHh
Confidence 9999999 999999873 789999999 567789999964 8 7999999998877
Q ss_pred cc
Q 018829 311 FD 312 (350)
Q Consensus 311 ~~ 312 (350)
..
T Consensus 200 ~~ 201 (223)
T TIGR03771 200 QD 201 (223)
T ss_pred cC
Confidence 55
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=270.40 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=138.1
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-cccEEEECCEeCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 150 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~ 150 (350)
.++++++|+++.|++ . .+ |+++||+|++||+++|+||||||||||+|+|+|+.+ + ++|+|.++|+++.
T Consensus 258 ~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~~ 326 (490)
T PRK10938 258 EPRIVLNNGVVSYND-R--PI---LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRRG 326 (490)
T ss_pred CceEEEeceEEEECC-e--eE---EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccCC
Confidence 468999999999964 2 34 677999999999999999999999999999999876 6 6999999997653
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh---hcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~---~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
... .....++.++|++|+...+... ..++.+++.++... .........++++.++++.+++.+.
T Consensus 327 ~~~---~~~~~~~~i~~v~q~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 393 (490)
T PRK10938 327 SGE---TIWDIKKHIGYVSSSLHLDYRV--------STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR-- 393 (490)
T ss_pred CCC---CHHHHHhhceEECHHHHhhccc--------CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh--
Confidence 100 0000122456666543221100 01222222211110 0001112335678889999999752
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------C-ceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g-~TVIiiT 281 (350)
..++++.+||||||||++||||| ||||++||. + .|||++|
T Consensus 394 --------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs 459 (490)
T PRK10938 394 --------------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459 (490)
T ss_pred --------------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 24889999999999999999999 999999874 4 4699999
Q ss_pred c--hHHHh-cccEEEEEecCCeEeecCCc
Q 018829 282 H--GDLLS-LTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 282 H--~~~~~-~aDri~v~l~~G~iv~~g~~ 307 (350)
| +.+.. +||+++ +|++|++++....
T Consensus 460 Hd~~~~~~~~~d~v~-~l~~G~i~~~~~~ 487 (490)
T PRK10938 460 HHAEDAPACITHRLE-FVPDGDIYRYVQT 487 (490)
T ss_pred cchhhhhhhhheeEE-EecCCceEEeecc
Confidence 9 46665 599996 5999999876543
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=240.88 Aligned_cols=171 Identities=14% Similarity=0.094 Sum_probs=124.2
Q ss_pred CcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+.++||+|.|+.+ ....+ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~ 76 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKE 76 (202)
T ss_pred ceEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECcc
Confidence 357899999999643 12345 666999999999999999999999999999999997221 579999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. ....++.++|++|+...+..+ ++.+|+.++... . .
T Consensus 77 ~-----~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~-----------------~-----~------- 112 (202)
T cd03233 77 F-----AEKYPGEIIYVSEEDVHFPTL----------TVRETLDFALRC-----------------K-----G------- 112 (202)
T ss_pred c-----hhhhcceEEEEecccccCCCC----------cHHHHHhhhhhh-----------------c-----c-------
Confidence 0 011123456666654333221 444444321110 0 1
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec---
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--- 282 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--- 282 (350)
++.+..||||||||++||||| |||+++||. +.|+|+++|
T Consensus 113 ------------~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~ 180 (202)
T cd03233 113 ------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQAS 180 (202)
T ss_pred ------------ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCH
Confidence 556789999999999999999 999999873 456666655
Q ss_pred hHHHhcccEEEEEecCCeEeecC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g 305 (350)
+.+.++||+++ +|++|++++.|
T Consensus 181 ~~~~~~~d~i~-~l~~G~i~~~g 202 (202)
T cd03233 181 DEIYDLFDKVL-VLYEGRQIYYG 202 (202)
T ss_pred HHHHHhCCeEE-EEECCEEEecC
Confidence 46778999996 59999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=238.09 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=119.5
Q ss_pred CcEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 73 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+|+++|+++.|+++. ..++ |+++||+|++||+++|+||||||||||+++|+|++.. .|++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~~~G~i~~~g~~~~- 74 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL---LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA---GVITGEILINGRPLD- 74 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe---EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCcceEEEECCEehH-
Confidence 4689999999996421 1234 6669999999999999999999999999999998621 078999999998863
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
...++.++|++|+...+.. .++.+|+.++..
T Consensus 75 -------~~~~~~i~~~~q~~~~~~~----------~tv~~~l~~~~~-------------------------------- 105 (192)
T cd03232 75 -------KNFQRSTGYVEQQDVHSPN----------LTVREALRFSAL-------------------------------- 105 (192)
T ss_pred -------HHhhhceEEecccCccccC----------CcHHHHHHHHHH--------------------------------
Confidence 0112234566655432221 134344331100
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h-
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G- 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~- 283 (350)
. + +|||||+||++||||| |||+++||. ++|+|++|| +
T Consensus 106 ----------~-~----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 106 ----------L-R----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred ----------H-h----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 0 1 7999999999999999 999999873 799999999 3
Q ss_pred HHHhcccEEEEEecC-CeEeecC
Q 018829 284 DLLSLTDRARIRTYL-GELLGIP 305 (350)
Q Consensus 284 ~~~~~aDri~v~l~~-G~iv~~g 305 (350)
.+..+||+++ +|++ |++++.|
T Consensus 171 ~~~~~~d~i~-~l~~~g~i~~~g 192 (192)
T cd03232 171 SIFEKFDRLL-LLKRGGKTVYFG 192 (192)
T ss_pred HHHhhCCEEE-EEcCCCeEEeCC
Confidence 3578899996 5998 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=235.34 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=111.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+. . ++ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (173)
T cd03230 1 IEVRNLSKRYGK-K--TA---LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKE-- 67 (173)
T ss_pred CEEEEEEEEECC-e--ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcccc--
Confidence 478999999964 2 34 666999999999999999999999999999999999 9999999999887511
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
. ...++.++|++|+.. ++.. ++.+|+
T Consensus 68 ~---~~~~~~i~~~~q~~~-----------~~~~~tv~~~~--------------------------------------- 94 (173)
T cd03230 68 P---EEVKRRIGYLPEEPS-----------LYENLTVRENL--------------------------------------- 94 (173)
T ss_pred h---HhhhccEEEEecCCc-----------cccCCcHHHHh---------------------------------------
Confidence 0 011223455555432 2111 111111
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~ 286 (350)
. ||||||||++||||| ||||++||. |.|+|++|| ..+.
T Consensus 95 ----------~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 95 ----------K-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred ----------h-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1 999999999999999 999999874 689999999 4667
Q ss_pred hcccEEEEEecCCeE
Q 018829 287 SLTDRARIRTYLGEL 301 (350)
Q Consensus 287 ~~aDri~v~l~~G~i 301 (350)
.+||+++ +|++|++
T Consensus 160 ~~~d~i~-~l~~g~i 173 (173)
T cd03230 160 RLCDRVA-ILNNGRI 173 (173)
T ss_pred HhCCEEE-EEeCCCC
Confidence 7999996 5999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=240.86 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=126.3
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
.+.|+.++|+.+. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 2 ~~~~~~~~~~~~~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 2 QVTNGYFSWGSGL--AT---LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeeeEEecCCCC--cc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCccccccccc
Confidence 5789999997543 34 677999999999999999999999999999999999 9999999999876411100
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
......++.++|++|+... +..++.+|+.++... . . +++.++++.+++.+.+. ..-
T Consensus 72 ~~~~~~~~~i~~~~q~~~~-----------~~~t~~~nl~~~~~~----~-~---~~~~~~~~~~~l~~~~~----~~~- 127 (218)
T cd03290 72 ATRSRNRYSVAYAAQKPWL-----------LNATVEENITFGSPF----N-K---QRYKAVTDACSLQPDID----LLP- 127 (218)
T ss_pred ccchhhcceEEEEcCCCcc-----------ccccHHHHHhhcCcC----C-H---HHHHHHHHHhCcHHHHH----hCc-
Confidence 0001112345566665432 223555666543210 1 1 12234455555543110 000
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------------------CceEEEEec--hHHH
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------------g~TVIiiTH--~~~~ 286 (350)
....+.++.++..||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 128 -~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~- 205 (218)
T cd03290 128 -FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL- 205 (218)
T ss_pred -CccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-
Confidence 0000013567889999999999999999 999999863 689999999 444
Q ss_pred hcccEEEEEecCCe
Q 018829 287 SLTDRARIRTYLGE 300 (350)
Q Consensus 287 ~~aDri~v~l~~G~ 300 (350)
..||+++ +|++|.
T Consensus 206 ~~~d~i~-~l~~G~ 218 (218)
T cd03290 206 PHADWII-AMKDGS 218 (218)
T ss_pred hhCCEEE-EecCCC
Confidence 5699996 588873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=235.13 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=115.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++| + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (182)
T cd03215 2 EPVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR 66 (182)
T ss_pred CcEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc
Confidence 3579999999998 3 777999999999999999999999999999999999 999999999988751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.. .....++.++|++|+... ..++. .++.+|+.++
T Consensus 67 ~~---~~~~~~~~i~~~~q~~~~--------~~~~~~~t~~e~l~~~--------------------------------- 102 (182)
T cd03215 67 RS---PRDAIRAGIAYVPEDRKR--------EGLVLDLSVAENIALS--------------------------------- 102 (182)
T ss_pred cC---HHHHHhCCeEEecCCccc--------CcccCCCcHHHHHHHH---------------------------------
Confidence 10 001112244555554210 01111 1222222110
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
. .||||||||++||||| |||+++||. +.|+|++|| +
T Consensus 103 -------------~----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 103 -------------S----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred -------------h----hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 0 1999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeE
Q 018829 284 DLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~i 301 (350)
.+.++||+++ +|++|++
T Consensus 166 ~~~~~~d~v~-~l~~G~i 182 (182)
T cd03215 166 ELLGLCDRIL-VMYEGRI 182 (182)
T ss_pred HHHHhCCEEE-EecCCcC
Confidence 7888999996 5999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=236.89 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=118.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEeCCCC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++|++++|++ . .+ |+++||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 1 LEIKDLHVSVGG-K--EI---LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITDL 69 (200)
T ss_pred CeEEEEEEEeCC-E--Ee---eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCcC
Confidence 478999999974 2 34 6669999999999999999999999999999999 47 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .....+..++|++|+. .+++. ++. +.+
T Consensus 70 ~---~~~~~~~~i~~v~q~~-----------~~~~~~~~~-----------------------~~l-------------- 98 (200)
T cd03217 70 P---PEERARLGIFLAFQYP-----------PEIPGVKNA-----------------------DFL-------------- 98 (200)
T ss_pred C---HHHHhhCcEEEeecCh-----------hhccCccHH-----------------------HHH--------------
Confidence 0 0001111244444442 22211 110 000
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
+..+.+|||||+||++||||| ||||++||. ++|||++|| +.
T Consensus 99 ------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 99 ------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred ------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 123358999999999999999 999999873 789999999 55
Q ss_pred HHh-cccEEEEEecCCeEeecCCc
Q 018829 285 LLS-LTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 285 ~~~-~aDri~v~l~~G~iv~~g~~ 307 (350)
+.+ +||+++ +|++|++++.|+.
T Consensus 167 ~~~~~~d~i~-~l~~G~i~~~~~~ 189 (200)
T cd03217 167 LDYIKPDRVH-VLYDGRIVKSGDK 189 (200)
T ss_pred HHHhhCCEEE-EEECCEEEEEccH
Confidence 556 799996 5999999999854
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=237.45 Aligned_cols=204 Identities=15% Similarity=0.204 Sum_probs=173.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC-EeCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G-~~i~~ 151 (350)
+.+++++|+++|++ ..|+ +++||+|.+||.-+|||||||||||++-.|+|-.+ |+.|+|+++| .++.
T Consensus 4 ~iL~~~~vsVsF~G---F~Al---n~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~- 71 (249)
T COG4674 4 IILYLDGVSVSFGG---FKAL---NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLT- 71 (249)
T ss_pred ceEEEeceEEEEcc---eeee---eeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhc-
Confidence 57899999999975 5674 55999999999999999999999999999999999 9999999999 7876
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHH---HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~---~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
...++.+.+..++..||.+.-|..+ |+||+.+... .++..+. . ..+.+-+.++.++|...||.+.
T Consensus 72 --~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~-----~--r~~~~e~~ride~La~igL~~~-- 140 (249)
T COG4674 72 --KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF-----A--RLRAEERRRIDELLATIGLGDE-- 140 (249)
T ss_pred --cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhh-----h--hcChhHHHHHHHHHHHcccchh--
Confidence 4556777788899999999999888 9999887553 3322222 1 1234556789999999999984
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC---------------CCceEEEEec-
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------------DDKPVVVVTH- 282 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld---------------~g~TVIiiTH- 282 (350)
.+.....||-||||++.|++.+ |||++++. .+++|++|.|
T Consensus 141 ---------------~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHD 205 (249)
T COG4674 141 ---------------RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHD 205 (249)
T ss_pred ---------------hhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 4888999999999999999988 99999954 3899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
.++..+|++|.| |+.|.+...|+.+++-++|.
T Consensus 206 M~Fvr~~A~~VTV-lh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 206 MGFVREIADKVTV-LHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred HHHHHHhhheeEE-EeccceeecccHHHhhcCcc
Confidence 689999999985 99999999999999987775
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=276.13 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=143.8
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc--ccEEEECCEeCCCCc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTY 153 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~--~G~I~i~G~~i~~~~ 153 (350)
..+|++++|++ + .+ |+|+||++++||++||+||||||||||+++|+|+++ |+ +|+|.++|+++..
T Consensus 70 ~~~~l~~~~~~-~--~i---L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~~-- 136 (659)
T PLN03211 70 KISDETRQIQE-R--TI---LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPTK-- 136 (659)
T ss_pred ccccccccCCC-C--ee---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECch--
Confidence 35667777854 2 34 677999999999999999999999999999999998 74 8999999988641
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ++.++|++|+...+..+ ++.+++.+..... .....++.++++.++++.+||.+...
T Consensus 137 -----~~-~~~i~yv~Q~~~l~~~l----------TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 196 (659)
T PLN03211 137 -----QI-LKRTGFVTQDDILYPHL----------TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN---- 196 (659)
T ss_pred -----hh-ccceEEECcccccCCcC----------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC----
Confidence 11 22456777765544332 3444444332111 11223445677889999999975110
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h-
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G- 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~- 283 (350)
.. +.++.+.+||||||||++||||| ||||++||. |+|||++|| .
T Consensus 197 ---t~-----vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 197 ---TI-----IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268 (659)
T ss_pred ---ce-----eCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 00 12456788999999999999999 999999873 899999999 3
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
.+.+++|+++ +|++|+++..|+++++.
T Consensus 269 ~i~~~~D~ii-lL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 269 RVYQMFDSVL-VLSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHHHhhceEE-EecCCcEEEECCHHHHH
Confidence 4778999996 59999999999998774
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=234.17 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=110.6
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+. . ++ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~-~--~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (178)
T cd03229 1 LELKNVSKRYGQ-K--TV---LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDL-- 67 (178)
T ss_pred CEEEEEEEEECC-e--EE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc--
Confidence 478999999964 2 34 667999999999999999999999999999999999 9999999999887511
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.+.....++.+++++|+...+.. .++.+|+.
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~----------~t~~~~l~--------------------------------------- 98 (178)
T cd03229 68 EDELPPLRRRIGMVFQDFALFPH----------LTVLENIA--------------------------------------- 98 (178)
T ss_pred chhHHHHhhcEEEEecCCccCCC----------CCHHHhee---------------------------------------
Confidence 00000112234455544221100 01111110
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
+ .||||||||++||||| |||+++||. +.|+|++|| ..+.
T Consensus 99 -------~------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 99 -------L------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred -------e------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 0 1999999999999999 999999873 589999999 4666
Q ss_pred hcccEEEEEecCCe
Q 018829 287 SLTDRARIRTYLGE 300 (350)
Q Consensus 287 ~~aDri~v~l~~G~ 300 (350)
.+||+++ +|++|+
T Consensus 166 ~~~d~i~-~l~~g~ 178 (178)
T cd03229 166 RLADRVV-VLRDGK 178 (178)
T ss_pred HhcCEEE-EEeCCC
Confidence 7899996 498874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=231.52 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=107.9
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++.. ..+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 69 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPV---LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDL-- 69 (171)
T ss_pred CEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhhhc--
Confidence 47899999997532 134 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.... .++.+++++++ ..++..++.+|
T Consensus 70 -~~~~-~~~~i~~~~~~-----------~~~~~~t~~e~----------------------------------------- 95 (171)
T cd03228 70 -DLES-LRKNIAYVPQD-----------PFLFSGTIREN----------------------------------------- 95 (171)
T ss_pred -CHHH-HHhhEEEEcCC-----------chhccchHHHH-----------------------------------------
Confidence 0000 01123343333 22211111000
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHhc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~~ 288 (350)
+ ||+|||||++||||| |||+++||. ++|+|++|| +.+..
T Consensus 96 -------l-------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 96 -------I-------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred -------h-------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 1 999999999999999 999999873 789999999 45655
Q ss_pred ccEEEEEecCCe
Q 018829 289 TDRARIRTYLGE 300 (350)
Q Consensus 289 aDri~v~l~~G~ 300 (350)
||+++ +|++|+
T Consensus 161 ~d~~~-~l~~g~ 171 (171)
T cd03228 161 ADRII-VLDDGR 171 (171)
T ss_pred CCEEE-EEcCCC
Confidence 99996 598874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=233.76 Aligned_cols=166 Identities=10% Similarity=0.073 Sum_probs=123.8
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++|++++|+. .. +.++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~-~~------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 66 (195)
T PRK13541 1 MLSLHQLQFNIEQ-KN------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINN-- 66 (195)
T ss_pred CeEEEEeeEEECC-cE------EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccCh--
Confidence 4789999999964 32 444999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
. ....+++++++...+. ..++.+|+.+..... ...+.+.++++.+++.+
T Consensus 67 ----~--~~~~~~~~~~~~~~~~----------~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~--------- 115 (195)
T PRK13541 67 ----I--AKPYCTYIGHNLGLKL----------EMTVFENLKFWSEIY------NSAETLYAAIHYFKLHD--------- 115 (195)
T ss_pred ----h--hhhhEEeccCCcCCCc----------cCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHh---------
Confidence 0 0112345544432211 124445554332211 02345677889999976
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~ 287 (350)
..++.+..||||||||++||||+ |||+++||. +.|+|++|| .....
T Consensus 116 --------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 116 --------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred --------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 45888999999999999999999 999999873 799999999 34444
Q ss_pred cccEE
Q 018829 288 LTDRA 292 (350)
Q Consensus 288 ~aDri 292 (350)
.||-+
T Consensus 188 ~~~~~ 192 (195)
T PRK13541 188 SAQIL 192 (195)
T ss_pred hhhee
Confidence 57765
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=227.31 Aligned_cols=135 Identities=15% Similarity=0.237 Sum_probs=107.9
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++|++++|++ . ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~-~--~v---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~--- 66 (163)
T cd03216 1 LELRGITKRFGG-V--KA---LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSF--- 66 (163)
T ss_pred CEEEEEEEEECC-e--EE---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCc---
Confidence 478999999974 2 34 667999999999999999999999999999999999 999999999987640
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
... .... -..+++
T Consensus 67 ------------~~~------------------------------------~~~~-------~~~i~~------------ 79 (163)
T cd03216 67 ------------ASP------------------------------------RDAR-------RAGIAM------------ 79 (163)
T ss_pred ------------CCH------------------------------------HHHH-------hcCeEE------------
Confidence 000 0000 000111
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHh
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~ 287 (350)
..+|||||+||++||||| |||+++||. +.|+|++|| ..+..
T Consensus 80 ------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 80 ------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred ------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 112999999999999999 999999873 789999999 46778
Q ss_pred cccEEEEEecCCeEee
Q 018829 288 LTDRARIRTYLGELLG 303 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~ 303 (350)
+||+++ +|++|++++
T Consensus 148 ~~d~~~-~l~~g~i~~ 162 (163)
T cd03216 148 IADRVT-VLRDGRVVG 162 (163)
T ss_pred hCCEEE-EEECCEEEe
Confidence 999996 599999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=273.93 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=129.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+++++||+++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~~--i---l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~------ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV--L---IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA------ 513 (659)
T ss_pred CeEEEEeeEEECCCCCe--e---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC------
Confidence 46999999999964433 4 677999999999999999999999999999999999 9999998753
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
+..+++++|++..+.+. +.+|+.++............++++.++++.+++.+.+ ++..+
T Consensus 514 ---------~~~i~~v~Q~~~l~~~t-----------v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~-~~~~g 572 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLGT-----------LRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHIL-EREGG 572 (659)
T ss_pred ---------CCcEEEECCCCCCCCcC-----------HHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHH-hhcCC
Confidence 12456777776554434 4444444321100000111234577889999987632 11111
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec-hHHHhcc
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 289 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH-~~~~~~a 289 (350)
...+ ...+..||||||||++||||| ||||++||. ++|+|+||| ....+.|
T Consensus 573 ~~~~-------~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 573 WSAV-------QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred cccc-------cccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 1111 123478999999999999999 999999984 899999999 4556889
Q ss_pred cEEEEEec
Q 018829 290 DRARIRTY 297 (350)
Q Consensus 290 Dri~v~l~ 297 (350)
|+++ +|+
T Consensus 646 d~il-~l~ 652 (659)
T TIGR00954 646 EYLL-YMD 652 (659)
T ss_pred CEEE-EEe
Confidence 9996 475
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=267.08 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=141.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+++++||+++|+++. ++ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~~~--~i---l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~----- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK--EI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG----- 67 (552)
T ss_pred EEEEEeeEEEecCCCC--ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-----
Confidence 4799999999996333 34 666999999999999999999999999999999999 99999998751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHh---hhhhhhhhhcCCCc---------------------H
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIME---GVRHGELVIRRSDS---------------------S 207 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~---~v~~~~~~~~~~~~---------------------~ 207 (350)
..++|++|++..+..+ +.+++.+....... .+............ .
T Consensus 68 ----------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (552)
T TIGR03719 68 ----------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137 (552)
T ss_pred ----------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcc
Confidence 1357888876655443 66665542110000 00000000000000 0
Q ss_pred HHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----
Q 018829 208 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 273 (350)
Q Consensus 208 ~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----- 273 (350)
....++.++++.+++.. .++++.+||||||||++||||| ||||++||.
T Consensus 138 ~~~~~~~~~l~~~~l~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~ 199 (552)
T TIGR03719 138 DLDRKLEIAMDALRCPP------------------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW 199 (552)
T ss_pred hhHHHHHHHHhhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHH
Confidence 12244566677777743 2678899999999999999999 999999984
Q ss_pred --------CceEEEEec--hHHHhcccEEEEEecCCeEe-ecCCcccccc
Q 018829 274 --------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 312 (350)
Q Consensus 274 --------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 312 (350)
+.|||+||| +.+..+||+++ +|++|+++ ..|+.++++.
T Consensus 200 l~~~L~~~~~tvIiisHd~~~~~~~~d~v~-~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 200 LEQHLQEYPGTVVAVTHDRYFLDNVAGWIL-ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHhhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 679999999 57788999996 59999976 6788877654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=285.33 Aligned_cols=231 Identities=12% Similarity=0.075 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHccchh----cccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 48 VDQRRRDAVFREVLQSYDQ----LRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 48 ~~~~~~~~~~~~~l~~~~~----~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
-+...+++|+.+-.+.++| .+.. ..+.|+++|++.+|.++.+ .+ |++|||+|++||.+||||.+|
T Consensus 1101 En~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1101 ENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred HhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCC
Confidence 3445567799999887666 1111 2346999999999987654 34 666999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+++|-++.. |.+|+|.+||.|+.. ..-+. -|+++++.+||+..|.+.+..|+..+.
T Consensus 1177 aGKSSL~~aLFRl~e-----~~~G~I~IDgvdI~~---igL~d-LRsrlsIIPQdPvLFsGTvR~NLDPf~--------- 1238 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVE-----PAEGEILIDGVDISK---IGLHD-LRSRLSIIPQDPVLFSGTVRFNLDPFD--------- 1238 (1381)
T ss_pred CCHHHHHHHHHHhcC-----ccCCeEEEcCeeccc---ccHHH-HHhcCeeeCCCCceecCccccccCccc---------
Confidence 999999999999999 999999999999971 10111 144566777777777777666665432
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+-.++++.++|+..+|.+.+.......+.. ..+-...+|-||||.+++|||| ||+
T Consensus 1239 ----------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~------v~egG~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1239 ----------EYSDDEIWEALERCQLKDVVSSLPGGLDSE------VSEGGENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred ----------ccCHHHHHHHHHHhChHHHHhhCCcCCCce------ecCCCccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 233456777777777765433323332221 2344567999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 268 YLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
|++.|. ++|||.|+| +.+. -||||+ ||++|+++|.++|+++++++..-+
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-d~DrVl-Vld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-DSDRVL-VLDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-hcCeEE-EeeCCeEeecCChHHHHhCCcchH
Confidence 999884 999999999 4554 499996 599999999999999998876544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=291.82 Aligned_cols=218 Identities=13% Similarity=0.124 Sum_probs=153.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhccc-----C----CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEc
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRT-----R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 113 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~-----~----~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvG 113 (350)
.|..+...+....|+.++++.+++... . ....++++|++|+|+... .++ |+|+||+|++|++++|+|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---l~~isl~i~~G~~v~IvG 671 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDL-PPT---LNGITFSIPEGALVAVVG 671 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCC-Cce---eeeeEEEEcCCCEEEEEC
Confidence 455666777778899999976543211 0 112699999999997432 123 777999999999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhh
Q 018829 114 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 193 (350)
Q Consensus 114 pnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~ 193 (350)
|||||||||+++|+|+++ |++|+|.++|. ++|++|++..+. .++.+|
T Consensus 672 ~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~-----------------i~yv~Q~~~l~~-----------~Ti~eN 718 (1522)
T TIGR00957 672 QVGCGKSSLLSALLAEMD-----KVEGHVHMKGS-----------------VAYVPQQAWIQN-----------DSLREN 718 (1522)
T ss_pred CCCCCHHHHHHHHhCCCc-----cCCcEEEECCE-----------------EEEEcCCccccC-----------CcHHHH
Confidence 999999999999999999 99999999872 356766654443 355566
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------
Q 018829 194 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--------- 264 (350)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--------- 264 (350)
|.++... +.+ +..++++..++.+++....++.. |..++.+..||||||||++||||+
T Consensus 719 I~~g~~~----~~~----~~~~~~~~~~l~~~l~~~~~g~~------t~ig~~g~~LSGGQkqRiaLARAl~~~~~illL 784 (1522)
T TIGR00957 719 ILFGKAL----NEK----YYQQVLEACALLPDLEILPSGDR------TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 784 (1522)
T ss_pred hhcCCcc----CHH----HHHHHHHHhCCHHHHHhcCCCCC------ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6554321 111 12222222222211100000000 134677889999999999999999
Q ss_pred chhhcCCCC------------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 265 NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 265 DEPts~Ld~------------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
|||+++||. ++|+|+||| ......||+|+ +|++|++++.|++++++.
T Consensus 785 DEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii-~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII-VMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE-EecCCeEEeeCCHHHHHh
Confidence 999999863 589999999 34445599995 599999999999988864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=245.32 Aligned_cols=184 Identities=16% Similarity=0.160 Sum_probs=129.6
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE-----------ECC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 146 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 146 (350)
.+|+++|+++. .+ |+++|+ +++||+++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 4 ~~~~~~y~~~~--~~---l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNS--FK---LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcc--hh---hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 47899997533 34 566995 99999999999999999999999999999 9999996 666
Q ss_pred EeCCCCccccccccCC--CccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 147 SVGDGTYFLQEYTIPR--GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 147 ~~i~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
+++... .. ...+ ..+++.++. ....+.++.+++.+... ....++.+.++++.+++.+
T Consensus 73 ~~~~~~--~~--~~~~~~~~i~~~~~~-----------~~~~~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~~ 131 (255)
T cd03236 73 SELQNY--FT--KLLEGDVKVIVKPQY-----------VDLIPKAVKGKVGELLK------KKDERGKLDELVDQLELRH 131 (255)
T ss_pred chhhhh--hH--Hhhhcccceeeecch-----------hccCchHHHHHHHHHhc------hhHHHHHHHHHHHHcCCch
Confidence 665310 00 0000 012233332 22222222233332211 1234466788999999987
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 279 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIi 279 (350)
..++.+..||||||||++||||| ||||++||. ++|||+
T Consensus 132 -----------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 132 -----------------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred -----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45889999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCccccccCCCC
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 316 (350)
+|| ..+..+||+++ +| +|++.+.| ++..|.+
T Consensus 195 iSHd~~~~~~~ad~i~-~l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 195 VEHDLAVLDYLSDYIH-CL-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred EECCHHHHHHhCCEEE-EE-CCCCCcce----eeecCcc
Confidence 999 56777899995 47 56675544 4555554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=268.16 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=137.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+++|+.. .+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|... .
T Consensus 1 ~i~i~nls~~~g~~---~~---l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~~-i-- 66 (638)
T PRK10636 1 MIVFSSLQIRRGVR---VL---LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNWQ-L-- 66 (638)
T ss_pred CEEEEEEEEEeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE-E--
Confidence 58999999999752 34 666999999999999999999999999999999999 9999999987421 1
Q ss_pred cccccccCCCccceeeccc----cccccchhhhhHhhHH-HHHh------h--hhhhhhhh--cCCCcHHHHHHHHHHHH
Q 018829 154 FLQEYTIPRGSNSFSLYDT----RSLSDDASDNINMIKL-WIME------G--VRHGELVI--RRSDSSSLRNRMRCKAH 218 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~----~~~~~~v~q~~~l~~~-~v~~------~--v~~~~~~~--~~~~~~~~~~~i~~~l~ 218 (350)
+++.|+. ....+++.+....+.. +... + ..++.... ........+.++.++++
T Consensus 67 ------------~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 134 (638)
T PRK10636 67 ------------AWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134 (638)
T ss_pred ------------EEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 2222211 1112233332222111 1000 0 00110000 00111234567889999
Q ss_pred HcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------Cce
Q 018829 219 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKP 276 (350)
Q Consensus 219 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~T 276 (350)
.+|+.+. ..++++.+||||||||++||||| ||||++||. +.|
T Consensus 135 ~lgl~~~----------------~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~t 198 (638)
T PRK10636 135 GLGFSNE----------------QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGT 198 (638)
T ss_pred hCCCCch----------------hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCe
Confidence 9999732 34889999999999999999999 999999984 789
Q ss_pred EEEEec--hHHHhcccEEEEEecCCeEee-cCCccccc
Q 018829 277 VVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIF 311 (350)
Q Consensus 277 VIiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~ 311 (350)
||+||| ..+..+||+++ +|++|+++. .|+.....
T Consensus 199 viivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 199 LILISHDRDFLDPIVDKII-HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEeCCHHHHHHhcCEEE-EEeCCEEEEecCCHHHHH
Confidence 999999 57788999996 599999974 56655443
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=232.07 Aligned_cols=202 Identities=15% Similarity=0.205 Sum_probs=151.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+.+-.+.+.+ |+++||+|++||+++|+||||||||||.+.|+|.-. +.+++|+|.++|+|+..
T Consensus 2 ~~L~I~dLhv~v~~~keI-----LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~- 72 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEI-----LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILE- 72 (251)
T ss_pred ceeEEeeeEEEecCchhh-----hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCccccc-
Confidence 579999999998753234 677999999999999999999999999999999764 33999999999999972
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.......+..+...+|.+..+.+. +.+.+.... |...+.. .. ..+..+++.++++.+++++.
T Consensus 73 --l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~-----n~~~~~~---~~-~~~~~~~~~e~~~~l~~~~~------ 135 (251)
T COG0396 73 --LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAM-----NARRGAR---GI-LPEFIKELKEKAELLGLDEE------ 135 (251)
T ss_pred --CCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHH-----Hhhhccc---cc-cHHHHHHHHHHHHHcCCCHH------
Confidence 112222344566777877776665 333222211 1110000 01 23567788899999999874
Q ss_pred eeeeecchhhhhccCCC-CCCHHHHHHHHHHHHh---------chhhcCCC----------------CCceEEEEec-hH
Q 018829 232 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH-GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPts~Ld----------------~g~TVIiiTH-~~ 284 (350)
+++++.+ .+|||+|.|..|+.++ |||.|+|| ++.++++||| ..
T Consensus 136 ----------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 136 ----------FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred ----------HhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 5677775 5999999999999998 99999986 2899999999 55
Q ss_pred HHhcc--cEEEEEecCCeEeecCCcccccc
Q 018829 285 LLSLT--DRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 285 ~~~~a--Dri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+..+. |++. +|.+|+|+..|.+ ++..
T Consensus 206 ll~~i~pD~vh-vl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 206 LLDYIKPDKVH-VLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHhhcCCCEEE-EEECCEEEecCCH-HHHH
Confidence 55544 9996 5999999999998 5544
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=224.64 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=110.1
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|+.+.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~~--~---l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~------- 63 (166)
T cd03223 1 IELENLSLATPDGRV--L---LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG------- 63 (166)
T ss_pred CEEEEEEEEcCCCCe--e---eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------
Confidence 478999999964333 4 667999999999999999999999999999999999 99999999863
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
+.++|++|+...+ ..++.+|+.++
T Consensus 64 --------~~i~~~~q~~~~~-----------~~tv~~nl~~~------------------------------------- 87 (166)
T cd03223 64 --------EDLLFLPQRPYLP-----------LGTLREQLIYP------------------------------------- 87 (166)
T ss_pred --------ceEEEECCCCccc-----------cccHHHHhhcc-------------------------------------
Confidence 1346666664321 12344444311
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec-hHHHhcccE
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH-~~~~~~aDr 291 (350)
.+.+||||||||++||||| |||+++||. +.|+|++|| .....+||+
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCE
Confidence 1348999999999999999 999999984 789999999 344578999
Q ss_pred EEEEecCC
Q 018829 292 ARIRTYLG 299 (350)
Q Consensus 292 i~v~l~~G 299 (350)
+++ |+++
T Consensus 157 i~~-l~~~ 163 (166)
T cd03223 157 VLD-LDGE 163 (166)
T ss_pred EEE-EcCC
Confidence 964 7765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=234.88 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++|+++||+++|++ + ++ |+++|++|++||.++|+||||||||||+++++|.+. |++|.+.+.|+..-
T Consensus 28 ~~~li~l~~v~v~r~g-k--~i---L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G 96 (257)
T COG1119 28 NEPLIELKNVSVRRNG-K--KI---LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFG 96 (257)
T ss_pred CcceEEecceEEEECC-E--ee---ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeecc
Confidence 3467999999999975 3 34 677999999999999999999999999999999999 99999999998764
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhH--hhHH-HHHhhhhhhhhhh----cCCCcHHHHHHHHHHHHHcCCC
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVI----RRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~--l~~~-~v~~~v~~~~~~~----~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
.. ... ++.+..+++|.-.+. +... ++.+-|..|.-.. +....+...+++..+++.+|+.
T Consensus 97 ~~-------------~~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~ 162 (257)
T COG1119 97 KG-------------ETI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162 (257)
T ss_pred CC-------------cch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh
Confidence 11 111 344444444321111 1111 3333333332111 1122456778899999999999
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------------------Cce
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKP 276 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------------g~T 276 (350)
+ +++++..+||-|||||+.||||| |||+.+||. +.+
T Consensus 163 ~-----------------la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ 225 (257)
T COG1119 163 H-----------------LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPA 225 (257)
T ss_pred h-----------------hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCce
Confidence 8 67999999999999999999999 999999873 688
Q ss_pred EEEEec--hHHHhcccEEEEEecCCeEeecCC
Q 018829 277 VVVVTH--GDLLSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 277 VIiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 306 (350)
+|+||| +++....+++. .+++|+++..|.
T Consensus 226 ll~VtHh~eEi~~~~th~l-ll~~g~v~~~g~ 256 (257)
T COG1119 226 LLFVTHHAEEIPPCFTHRL-LLKEGEVVAQGK 256 (257)
T ss_pred EEEEEcchhhcccccceEE-EeeCCceeeccc
Confidence 999999 67777778885 499999998873
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=239.11 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=112.6
Q ss_pred CeeEeEEEe-----CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeec
Q 018829 96 MTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 170 (350)
Q Consensus 96 L~~is~~I~-----~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~ 170 (350)
+.+++|+++ +||+++|+||||||||||+++|+|+++ |++|+|.++|..+ ++.+|
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~i----------------~~~~q 68 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDTV----------------SYKPQ 68 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCceE----------------EEecc
Confidence 455888886 799999999999999999999999999 9999999998533 45555
Q ss_pred cccccc-cchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCC
Q 018829 171 DTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 249 (350)
Q Consensus 171 d~~~~~-~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 249 (350)
+..... ..+.+++... .... . .....+.++++.+++.. .+++.+.+
T Consensus 69 ~~~~~~~~tv~e~l~~~-----------~~~~-~----~~~~~~~~~l~~l~l~~-----------------~~~~~~~~ 115 (246)
T cd03237 69 YIKADYEGTVRDLLSSI-----------TKDF-Y----THPYFKTEIAKPLQIEQ-----------------ILDREVPE 115 (246)
T ss_pred cccCCCCCCHHHHHHHH-----------hhhc-c----ccHHHHHHHHHHcCCHH-----------------HhhCChhh
Confidence 543222 2244443221 1100 0 01123567788899976 45889999
Q ss_pred CCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhcccEEEEEecCC
Q 018829 250 SDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 250 LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri~v~l~~G 299 (350)
||||||||++||||| ||||++||. ++|||++|| ..+..+||+++ +|+.+
T Consensus 116 LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~-~l~~~ 192 (246)
T cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLI-VFEGE 192 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEcCC
Confidence 999999999999999 999999873 789999999 56778999996 47654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=263.31 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=136.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++||++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 322 ~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~-- 387 (556)
T PRK11819 322 DKVIEAENLSKSFGDR---LL---IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TV-- 387 (556)
T ss_pred CeEEEEEeEEEEECCe---ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ce--
Confidence 3589999999999642 34 666999999999999999999999999999999999 9999999853 21
Q ss_pred CccccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~-~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.++|++|+. ..+..+ ++.+|+.++..... .... ...+..+++.+++.+.
T Consensus 388 ------------~i~~v~q~~~~~~~~~----------tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 437 (556)
T PRK11819 388 ------------KLAYVDQSRDALDPNK----------TVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGG----- 437 (556)
T ss_pred ------------EEEEEeCchhhcCCCC----------CHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChh-----
Confidence 246777764 222222 33344433221111 1111 1234568999999642
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. ..|||+||| +.+.
T Consensus 438 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~ 506 (556)
T PRK11819 438 -----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLD 506 (556)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 24889999999999999999999 999999984 458999999 5778
Q ss_pred hcccEEEEEecC-CeEe-ecCCcccccc
Q 018829 287 SLTDRARIRTYL-GELL-GIPPAKQIFD 312 (350)
Q Consensus 287 ~~aDri~v~l~~-G~iv-~~g~~~~l~~ 312 (350)
.+||+++ +|++ |++. ..|+.+++++
T Consensus 507 ~~~d~i~-~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 507 RIATHIL-AFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HhCCEEE-EEECCCeEEEecCCHHHHHH
Confidence 8999996 5985 7876 4566655443
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=264.83 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=135.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|++ . .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.. ...
T Consensus 2 ~~l~i~~ls~~~~~-~--~i---l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~-~~~ 69 (635)
T PRK11147 2 SLISIHGAWLSFSD-A--PL---LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDL-IVA 69 (635)
T ss_pred cEEEEeeEEEEeCC-c--ee---EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCC-EEE
Confidence 47999999999974 2 34 666999999999999999999999999999999999 999999998731 111
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHh-----hHH-H-------------HHhhhhhhhhhh---cCCCcHHHH
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-----IKL-W-------------IMEGVRHGELVI---RRSDSSSLR 210 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l-----~~~-~-------------v~~~v~~~~~~~---~~~~~~~~~ 210 (350)
+..+... .....+++|++.. ... . ..+++....... ........+
T Consensus 70 ~l~q~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 136 (635)
T PRK11147 70 RLQQDPP-------------RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136 (635)
T ss_pred EeccCCC-------------CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHH
Confidence 1111100 0111222322110 000 0 011221100000 001112345
Q ss_pred HHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC--------
Q 018829 211 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 273 (350)
Q Consensus 211 ~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------- 273 (350)
.++.++++.+|+.. ++++.+||||||||++||||| ||||++||.
T Consensus 137 ~~~~~~l~~lgl~~-------------------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 137 NRINEVLAQLGLDP-------------------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred HHHHHHHHhCCCCC-------------------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH
Confidence 67888999999864 678899999999999999999 999999984
Q ss_pred -----CceEEEEec--hHHHhcccEEEEEecCCeEee-cCCcccccc
Q 018829 274 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIFD 312 (350)
Q Consensus 274 -----g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~~ 312 (350)
+.|||+||| ..+..+||+|+ +|++|+++. .|+..+.+.
T Consensus 198 ~L~~~~~tvlivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 198 FLKTFQGSIIFISHDRSFIRNMATRIV-DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 679999999 57778999996 599999974 577765544
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=232.04 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=117.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE-ECCEeCCCCccccccccCCCccceeeccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 174 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~-i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (350)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|. ++|..+. ++ +....
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~--------------~~---~~~~l 60 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP--------------LG---ANSFI 60 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec--------------cc---ccccc
Confidence 666999999999999999999999999999999999 9999997 7764331 01 11112
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
+..+ ++.+|+.+...... .+..... ..+.+.++++. ..++.+..||+||
T Consensus 61 ~~~l----------tv~enl~~~~~~~~-~~~~~~~---~~~~~~~~l~~-----------------~~~~~~~~lS~G~ 109 (213)
T PRK15177 61 LPGL----------TGEENARMMASLYG-LDGDEFS---HFCYQLTQLEQ-----------------CYTDRVSEYSVTM 109 (213)
T ss_pred CCcC----------cHHHHHHHHHHHcC-CCHHHHH---HHHHHHhChhH-----------------HhhchHhhcCHHH
Confidence 2221 33344433222111 1112222 22334566665 4578899999999
Q ss_pred HHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCcc
Q 018829 255 QYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 308 (350)
Q Consensus 255 rQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 308 (350)
|||++||||| |||++++|+ +.|+|++|| ..+..+||+++ +|++|+++..++.+
T Consensus 110 ~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~ 188 (213)
T PRK15177 110 KTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFG-VLLHGKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeE-EEECCeEEEeCCHH
Confidence 9999999999 999999763 678999999 56778999996 59999999988876
Q ss_pred cc
Q 018829 309 QI 310 (350)
Q Consensus 309 ~l 310 (350)
+.
T Consensus 189 ~~ 190 (213)
T PRK15177 189 QA 190 (213)
T ss_pred HH
Confidence 55
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=262.21 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=133.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|++++|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~-~--~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGD-K--LL---IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECC-e--ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 458999999999964 2 34 666999999999999999999999999999999999 9999999854 21
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.++|++|+.. .+..+ ++.+++.++..... .... +..+.++++.+++...
T Consensus 386 ------------~i~~v~q~~~~~~~~~----------tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 435 (552)
T TIGR03719 386 ------------KLAYVDQSRDALDPNK----------TVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGS----- 435 (552)
T ss_pred ------------EEEEEeCCccccCCCC----------cHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChh-----
Confidence 2467777642 22221 33344443321111 1111 2235578999999642
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+.
T Consensus 436 -----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~ 504 (552)
T TIGR03719 436 -----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLD 504 (552)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 24789999999999999999999 999999984 458999999 5778
Q ss_pred hcccEEEEEecC-CeEe-ecCCc
Q 018829 287 SLTDRARIRTYL-GELL-GIPPA 307 (350)
Q Consensus 287 ~~aDri~v~l~~-G~iv-~~g~~ 307 (350)
++||+++ +|++ |++. ..|+.
T Consensus 505 ~~~d~i~-~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 505 RIATHIL-AFEGDSHVEWFEGNY 526 (552)
T ss_pred HhCCEEE-EEECCCeEEEeCCCH
Confidence 8999996 5986 5766 34544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=264.01 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=136.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||++.|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. .
T Consensus 310 ~~~l~~~~l~~~y~~---~~i---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~-- 375 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RII---LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-I-- 375 (638)
T ss_pred CceEEEEeeEEEeCC---eee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-E--
Confidence 457999999999964 234 666999999999999999999999999999999999 99999998641 1
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.++|.+|+.... + .. ..++.+++.. .......+.+.++++.+++...
T Consensus 376 ------------~igy~~Q~~~~~--l-~~-----~~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~------ 422 (638)
T PRK10636 376 ------------KLGYFAQHQLEF--L-RA-----DESPLQHLAR-------LAPQELEQKLRDYLGGFGFQGD------ 422 (638)
T ss_pred ------------EEEEecCcchhh--C-Cc-----cchHHHHHHH-------hCchhhHHHHHHHHHHcCCChh------
Confidence 235666642110 0 00 0012222210 0012234567889999999642
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHh
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~ 287 (350)
..++++..||||||||++||||| ||||++||. +.|||+||| +.+..
T Consensus 423 ----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 423 ----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 34789999999999999999999 999999984 559999999 57788
Q ss_pred cccEEEEEecCCeEe-ecCCcccc
Q 018829 288 LTDRARIRTYLGELL-GIPPAKQI 310 (350)
Q Consensus 288 ~aDri~v~l~~G~iv-~~g~~~~l 310 (350)
+||+++ +|++|+++ ..|+.++.
T Consensus 493 ~~d~i~-~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 493 TTDDLY-LVHDGKVEPFDGDLEDY 515 (638)
T ss_pred hCCEEE-EEECCEEEEcCCCHHHH
Confidence 999996 59999997 67777665
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=265.33 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=135.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|+++.|+++.. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++..
T Consensus 506 ~~~L~~~~ls~~y~~~~~--i---l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~~--- 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL--L---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAKV--- 572 (718)
T ss_pred CceEEEEeeEEEeCCCCe--e---EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCce---
Confidence 368999999999964332 4 667999999999999999999999999999999999 999999986521
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.++|++|+..... .+.++..+.... . ... ..++++.++++.+++.+.
T Consensus 573 ------------~igyv~Q~~~~~l-~~~~~~~~~~~~---------~-~~~----~~~~~i~~~L~~~gl~~~------ 619 (718)
T PLN03073 573 ------------RMAVFSQHHVDGL-DLSSNPLLYMMR---------C-FPG----VPEQKLRAHLGSFGVTGN------ 619 (718)
T ss_pred ------------eEEEEeccccccC-CcchhHHHHHHH---------h-cCC----CCHHHHHHHHHHCCCChH------
Confidence 3466666531110 022221111000 0 001 113567788999999742
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHh
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. +.|||+||| ..+..
T Consensus 620 ----------~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~ 689 (718)
T PLN03073 620 ----------LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG 689 (718)
T ss_pred ----------HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 34789999999999999999999 999999973 459999999 57788
Q ss_pred cccEEEEEecCCeEe-ecCCccc
Q 018829 288 LTDRARIRTYLGELL-GIPPAKQ 309 (350)
Q Consensus 288 ~aDri~v~l~~G~iv-~~g~~~~ 309 (350)
+||+++ +|++|+++ ..|+.++
T Consensus 690 ~~drv~-~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 690 SVDELW-VVSEGKVTPFHGTFHD 711 (718)
T ss_pred hCCEEE-EEECCEEEEeCCCHHH
Confidence 999996 59999998 5665543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=261.45 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=132.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++.|++ .. |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ +
T Consensus 338 ~~~l~~~~ls~~~~~--~~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~-- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--FS-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---L-- 400 (590)
T ss_pred ceEEEEcceEEEECC--EE-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---e--
Confidence 468999999999964 23 667999999999999999999999999999999999 999999885 1
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.++|.+|+....... ++.+++.++.. ... ....+.++++.+++.+
T Consensus 401 ------------~i~y~~Q~~~~~~~~----------tv~e~l~~~~~---~~~---~~~~~~~~L~~l~l~~------- 445 (590)
T PRK13409 401 ------------KISYKPQYIKPDYDG----------TVEDLLRSITD---DLG---SSYYKSEIIKPLQLER------- 445 (590)
T ss_pred ------------eEEEecccccCCCCC----------cHHHHHHHHhh---hcC---hHHHHHHHHHHCCCHH-------
Confidence 235666664432222 33333333211 001 1124677899999986
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
..++++.+||||||||++||||| ||||++||. ++|||+||| +
T Consensus 446 ----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 446 ----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred ----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999873 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~ 306 (350)
.+..+|||++ +|+ |++...|.
T Consensus 516 ~~~~~aDrvi-vl~-~~~~~~g~ 536 (590)
T PRK13409 516 MIDYISDRLM-VFE-GEPGKHGH 536 (590)
T ss_pred HHHHhCCEEE-EEc-Ccceeeee
Confidence 7778999995 475 57777665
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=227.40 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=142.9
Q ss_pred cEEEEEEEEEECCCce--EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~--~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
|++++|+.+.|.++.+ .+++++ +|++|++|+++.|+|.||||||||+|.|+|-+. |++|+|.++|.+++.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~---~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVtk 72 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNG---LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVTK 72 (263)
T ss_pred CcccccceeeecCCChhHHHHHhc---CceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceeccc
Confidence 4678888888755432 456555 999999999999999999999999999999999 999999999999972
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHh--hHH-HHHhhhhhhhhhh--cCCC---cHHHHHHHHHHHHHcC--
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM--IKL-WIMEGVRHGELVI--RRSD---SSSLRNRMRCKAHKIG-- 221 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l--~~~-~v~~~v~~~~~~~--~~~~---~~~~~~~i~~~l~~~g-- 221 (350)
.+ .+....+...|+|++.. ++. ++.+|+.++...- +... ....++...+.+..++
T Consensus 73 ~~---------------~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg 137 (263)
T COG1101 73 KS---------------VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137 (263)
T ss_pred CC---------------HHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccc
Confidence 11 11112222334555442 222 7777776654421 1111 1233344455566654
Q ss_pred CCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------Cc
Q 018829 222 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 275 (350)
Q Consensus 222 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~ 275 (350)
+++ .++.+..-|||||||-+++++|. ||-|++||| +.
T Consensus 138 Len-----------------rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 138 LEN-----------------RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred hhh-----------------hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 456 56889999999999999999997 999999997 89
Q ss_pred eEEEEec--hHHHhcccEEEEEecCCeEeecCC
Q 018829 276 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 276 TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 306 (350)
|.+|||| .++..+.+|.+ +|+.|+|+.+-.
T Consensus 201 TtlMVTHnm~~Al~yG~RlI-mLh~G~IvlDv~ 232 (263)
T COG1101 201 TTLMVTHNMEDALDYGNRLI-MLHSGKIVLDVT 232 (263)
T ss_pred ceEEEeccHHHHHhhCCeEE-EEeCCeEEEEcc
Confidence 9999999 78999999995 599999998743
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=262.84 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=134.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc---ccEEEECCEeCCCCccccccccCCCccceeeccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 172 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~ 172 (350)
|+|+|+++++||+++|+||||||||||+++|+|..+ +. +|+|.++|.++. ... .++.++|++|+.
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~-----~~~~~~G~i~~~g~~~~------~~~-~~~~i~yv~Q~~ 108 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-----KGVKGSGSVLLNGMPID------AKE-MRAISAYVQQDD 108 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEECC------HHH-Hhhhceeecccc
Confidence 666999999999999999999999999999999987 53 799999998864 111 122445666654
Q ss_pred cccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCC---
Q 018829 173 RSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--- 247 (350)
Q Consensus 173 ~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~--- 247 (350)
..+..+ ++.+|+.++.... .....++.++++.++++.+|+.+ ..+..+
T Consensus 109 ~~~~~l----------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------------~~~t~vg~~ 161 (617)
T TIGR00955 109 LFIPTL----------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-----------------CANTRIGVP 161 (617)
T ss_pred ccCccC----------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-----------------cCcCccCCC
Confidence 433222 5555555543321 12233556678899999999976 234444
Q ss_pred ---CCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h-HHHhcccEEEEEe
Q 018829 248 ---GDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-DLLSLTDRARIRT 296 (350)
Q Consensus 248 ---~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~-~~~~~aDri~v~l 296 (350)
.+||||||||++||||| ||||++||. |+|||+++| . .+.+++|+++ +|
T Consensus 162 ~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~-ll 240 (617)
T TIGR00955 162 GRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII-LM 240 (617)
T ss_pred CCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE-Ee
Confidence 36999999999999999 999999873 899999999 2 5778999996 59
Q ss_pred cCCeEeecCCcccc
Q 018829 297 YLGELLGIPPAKQI 310 (350)
Q Consensus 297 ~~G~iv~~g~~~~l 310 (350)
++|++++.|+++++
T Consensus 241 ~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 241 AEGRVAYLGSPDQA 254 (617)
T ss_pred eCCeEEEECCHHHH
Confidence 99999999999877
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=262.94 Aligned_cols=177 Identities=11% Similarity=0.103 Sum_probs=133.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
..+|+++||+++|++ .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~---~~i---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~-- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQL---VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKL-- 382 (635)
T ss_pred CceEEEeeeEEEECC---eEE---EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCc--
Confidence 357999999999964 234 666999999999999999999999999999999999 99999998 4332
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.++|++|+.. .+... ++.+++.++.... .. ......+.+++..+++...
T Consensus 383 ------------~i~y~~q~~~~l~~~~----------tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~----- 432 (635)
T PRK11147 383 ------------EVAYFDQHRAELDPEK----------TVMDNLAEGKQEV-MV--NGRPRHVLGYLQDFLFHPK----- 432 (635)
T ss_pred ------------EEEEEeCcccccCCCC----------CHHHHHHhhcccc-cc--cchHHHHHHHHHhcCCCHH-----
Confidence 2356666532 22221 2333433321100 00 1123457788999998642
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
..++++..||||||||++||||| ||||++||. +.|||+||| .++.
T Consensus 433 -----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 433 -----------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred -----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 34889999999999999999999 999999984 569999999 5777
Q ss_pred hcccEEEEEec-CCeEeec
Q 018829 287 SLTDRARIRTY-LGELLGI 304 (350)
Q Consensus 287 ~~aDri~v~l~-~G~iv~~ 304 (350)
.+||+++ +++ +|++...
T Consensus 502 ~~~d~i~-~l~~~g~i~~~ 519 (635)
T PRK11147 502 NTVTECW-IFEGNGKIGRY 519 (635)
T ss_pred HhcCEEE-EEeCCCeEEEc
Confidence 8999996 587 8998764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=276.87 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=145.1
Q ss_pred cEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+++++||++.|+.+ ....+ |+|||++|++||++||+||||||||||+++|+|+.+.+. |++|+|.+||+++..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i---L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~~~- 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI---LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLDS- 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECCh-
Confidence 57999999999521 11345 666999999999999999999999999999999986322 688999999998741
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhc--CCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~--~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .++.++|++|+...+... ++.+++.++...+. ..+.++..+++.++++.+++.+
T Consensus 833 ------~-~~~~i~yv~Q~~~~~~~~----------Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~------ 889 (1394)
T TIGR00956 833 ------S-FQRSIGYVQQQDLHLPTS----------TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES------ 889 (1394)
T ss_pred ------h-hhcceeeecccccCCCCC----------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh------
Confidence 1 123456777764333222 44455544332111 1233455678899999999987
Q ss_pred ceeeeecchhhhhccCCC----CCCHHHHHHHHHHHHh----------chhhcCCCC----------------CceEEEE
Q 018829 231 NFVIFVVDGLAVLKSMEG----DSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~----~LSGGqrQRvaIArAL----------DEPts~Ld~----------------g~TVIii 280 (350)
.+++.++ +||||||||++||+|| ||||++||. |+|||++
T Consensus 890 -----------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t 958 (1394)
T TIGR00956 890 -----------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT 958 (1394)
T ss_pred -----------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3455555 7999999999999998 999999874 8999999
Q ss_pred ec--hH-HHhcccEEEEEecCC-eEeecCCcc
Q 018829 281 TH--GD-LLSLTDRARIRTYLG-ELLGIPPAK 308 (350)
Q Consensus 281 TH--~~-~~~~aDri~v~l~~G-~iv~~g~~~ 308 (350)
|| .. +...+|+++ +|++| ++++.|++.
T Consensus 959 ~H~~~~~~~~~~D~vl-~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 959 IHQPSAILFEEFDRLL-LLQKGGQTVYFGDLG 989 (1394)
T ss_pred ecCCCHHHHHhcCEEE-EEcCCCEEEEECCcc
Confidence 99 33 457799996 59987 999999874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=278.90 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC---CCCcEEEEEEEEEECCCc-------------------------------e
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGA-------------------------------W 89 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~l~i~~l~~~y~~~~-------------------------------~ 89 (350)
+..++.......||.++|+.+...... ....++++|++|.|.... .
T Consensus 359 ~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 438 (1490)
T TIGR01271 359 IQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYV 438 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCcccccccccccccccccccccccccccccccccc
Confidence 344455666777999999866432111 123489999999994210 0
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceee
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 169 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~ 169 (350)
.++ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ++|++
T Consensus 439 ~~~---l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g~-----------------iayv~ 493 (1490)
T TIGR01271 439 TPV---LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSGR-----------------ISFSP 493 (1490)
T ss_pred Ccc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE-----------------EEEEe
Confidence 124 667999999999999999999999999999999999 99999999872 35777
Q ss_pred ccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCC
Q 018829 170 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 249 (350)
Q Consensus 170 ~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 249 (350)
|++..+.+ ++.+||.++... +.. +..++++..++.+++....++. .|.....+..
T Consensus 494 Q~~~l~~~-----------Ti~eNI~~g~~~----~~~----~~~~~~~~~~L~~~l~~l~~g~------~t~vg~~g~~ 548 (1490)
T TIGR01271 494 QTSWIMPG-----------TIKDNIIFGLSY----DEY----RYTSVIKACQLEEDIALFPEKD------KTVLGEGGIT 548 (1490)
T ss_pred CCCccCCc-----------cHHHHHHhcccc----chH----HHHHHHHHHhHHHHHHhccccc------cccccCcCCC
Confidence 76555433 455555554321 111 1111122222211100000000 1134667889
Q ss_pred CCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEee
Q 018829 250 SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLG 303 (350)
Q Consensus 250 LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~ 303 (350)
||||||||++||||+ |||+++||. ++|+|++|| -.....||+|+ +|++|++++
T Consensus 549 LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii-~l~~g~i~~ 627 (1490)
T TIGR01271 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL-LLHEGVCYF 627 (1490)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE-EEECCEEEE
Confidence 999999999999999 999999874 789999999 23345699996 599999999
Q ss_pred cCCcccccc
Q 018829 304 IPPAKQIFD 312 (350)
Q Consensus 304 ~g~~~~l~~ 312 (350)
.|+++++..
T Consensus 628 ~g~~~~l~~ 636 (1490)
T TIGR01271 628 YGTFSELQA 636 (1490)
T ss_pred EcCHHHHHh
Confidence 999988864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=268.67 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCC
Q 018829 46 SLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 117 (350)
Q Consensus 46 ~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGs 117 (350)
..++......|+.++|..+...+.. ....++++|.+++..+..+.+. |+||||+|++|+.+||+||.||
T Consensus 482 ~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGs 558 (1381)
T KOG0054|consen 482 QLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGS 558 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCC
Confidence 3455566677999999876532221 3346999999999865333234 6779999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhh
Q 018829 118 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 197 (350)
Q Consensus 118 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~ 197 (350)
|||||+.+|.|-++ ..+|.|.++|. ++|++|.+. +++.++.+||.||
T Consensus 559 GKSSLL~AiLGEm~-----~~sG~v~v~gs-----------------iaYv~Q~pW-----------I~ngTvreNILFG 605 (1381)
T KOG0054|consen 559 GKSSLLSAILGEMP-----KLSGSVAVNGS-----------------VAYVPQQPW-----------IQNGTVRENILFG 605 (1381)
T ss_pred CHHHHHHHHhcCcc-----cccceEEEcCe-----------------EEEeccccH-----------hhCCcHHHhhhcC
Confidence 99999999999999 99999999983 246665554 4445566666665
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhh
Q 018829 198 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 268 (350)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 268 (350)
.. -.+++-++.++...|..++..-+++=. |...++...||||||||+++|||+ |.|.
T Consensus 606 ~~--------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~------TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054|consen 606 SP--------YDEERYDKVIKACALKKDLEILPFGDL------TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred cc--------ccHHHHHHHHHHccCHhHHhhcCCCCc------ceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence 54 234455566666666654422222222 234556668999999999999999 9999
Q ss_pred cCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 269 LSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 269 s~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
|++|. ++|+|++|| -...+.||.|+ +|++|+|.+.|+.+++++
T Consensus 672 SAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Ii-vl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQII-VLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEE-EecCCeEecccCHHHHHh
Confidence 99873 899999999 56678899995 599999999999999874
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=210.44 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=102.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
++++|++++|++. .+ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGK---LL---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCc---eE---EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 4789999999752 34 777999999999999999999999999999999999 999999998731
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.++|++
T Consensus 64 ---------~i~~~~----------------------------------------------------------------- 69 (144)
T cd03221 64 ---------KIGYFE----------------------------------------------------------------- 69 (144)
T ss_pred ---------EEEEEc-----------------------------------------------------------------
Confidence 011111
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHhccc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLTD 290 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~~aD 290 (350)
+||+||+||++||||| |||+++||. +.|+|++|| +.+..+||
T Consensus 70 --------------~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d 135 (144)
T cd03221 70 --------------QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred --------------cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 1999999999999999 999999884 789999999 56778899
Q ss_pred EEEEEecCCe
Q 018829 291 RARIRTYLGE 300 (350)
Q Consensus 291 ri~v~l~~G~ 300 (350)
+++ +|++|+
T Consensus 136 ~v~-~l~~g~ 144 (144)
T cd03221 136 KII-ELEDGK 144 (144)
T ss_pred EEE-EEeCCC
Confidence 996 598885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=229.67 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=142.7
Q ss_pred CcEEEEEEEEEECC-----------------C-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCC
Q 018829 73 SLTDAKNKILSYTP-----------------G-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 134 (350)
Q Consensus 73 ~~l~i~~l~~~y~~-----------------~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~ 134 (350)
.++.++|+++.|.- . ..+.|+.| +||+|++|++++++|||||||||++|+|+|++.
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqd---isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--- 75 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQD---ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--- 75 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhhe---eeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---
Confidence 35667777776641 1 12457555 999999999999999999999999999999999
Q ss_pred CCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHH
Q 018829 135 FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 214 (350)
Q Consensus 135 ~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~ 214 (350)
|++|.|.++|.+... .++ .. -+++++++-... ++.++.+.+-...+...| ...+.+.-+++..
T Consensus 76 --p~~G~v~V~G~~Pf~---~~~-~~-~~~~~~v~gqk~---ql~Wdlp~~ds~~v~~~I-------y~Ipd~~F~~r~~ 138 (325)
T COG4586 76 --PTSGKVRVNGKDPFR---RRE-EY-LRSIGLVMGQKL---QLWWDLPALDSLEVLKLI-------YEIPDDEFAERLD 138 (325)
T ss_pred --cCCCeEEecCcCcch---hHH-HH-HHHHHHHhhhhh---eeeeechhhhhHHHHHHH-------HhCCHHHHHHHHH
Confidence 999999999976531 000 00 001112111000 001111111000111111 1334566778888
Q ss_pred HHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------------
Q 018829 215 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------ 273 (350)
Q Consensus 215 ~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------ 273 (350)
.+.+.+++++ +++.+.+.||-|||.|+.||.|| ||||.+||=
T Consensus 139 ~l~eiLdl~~-----------------~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke 201 (325)
T COG4586 139 FLTEILDLEG-----------------FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201 (325)
T ss_pred HHHHHhcchh-----------------hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHH
Confidence 9999999998 56899999999999999999999 999999872
Q ss_pred -----CceEEEEec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 274 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 274 -----g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+.||++.|| +++.++||||+ .|+.|+++..|+.+++..
T Consensus 202 ~n~~~~aTVllTTH~~~di~~lc~rv~-~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 202 YNEERQATVLLTTHIFDDIATLCDRVL-LIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHhhCceEEEEecchhhHHHhhhheE-EeeCCcEeecccHHHHHH
Confidence 899999999 78999999996 599999999988766543
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=218.82 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=143.4
Q ss_pred CcEEEEEEEEEECC---------------------CceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTP---------------------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~---------------------~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+++||++.|.- .....+ |+||||++++||.+||||+||||||||+|+|+|.++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWA---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEE---ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 45777888777631 122567 555999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHH
Q 018829 132 NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 211 (350)
Q Consensus 132 ~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~ 211 (350)
|++|+|.++|.-.. -..+ ..++.++- ...+|+.+.. ... ...+++.++
T Consensus 79 -----Pt~G~v~v~G~v~~------li~l---g~Gf~pel------TGreNi~l~~-----------~~~-G~~~~ei~~ 126 (249)
T COG1134 79 -----PTSGKVKVTGKVAP------LIEL---GAGFDPEL------TGRENIYLRG-----------LIL-GLTRKEIDE 126 (249)
T ss_pred -----CCCceEEEcceEeh------hhhc---ccCCCccc------chHHHHHHHH-----------HHh-CccHHHHHH
Confidence 99999999996432 0000 11222111 1234444322 211 344678899
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC----------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------- 272 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld---------- 272 (350)
++.+..+-.+|.+ +.+.+...+|.||+-|+++|-|. ||-.+.-|
T Consensus 127 ~~~eIieFaELG~-----------------fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 127 KVDEIIEFAELGD-----------------FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHHHHHHH-----------------HhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 9999999999998 56999999999999999999998 77766633
Q ss_pred ------CCceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 273 ------DDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 273 ------~g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+.|+|+||| +.+.++|||++ .|++|++...|.+++++..
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i-~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAI-WLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeE-EEeCCEEEEcCCHHHHHHH
Confidence 3899999999 68889999996 5999999999999988654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=268.28 Aligned_cols=194 Identities=9% Similarity=0.053 Sum_probs=142.7
Q ss_pred cEEEEEEEEEECCC----------ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE
Q 018829 74 LTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 143 (350)
Q Consensus 74 ~l~i~~l~~~y~~~----------~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~ 143 (350)
.+.++||++..+.. ...++ |+|+|+++++|++++|+||||||||||+++|+|..+.+ +.+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i---L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL---LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE---eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEE
Confidence 48999999987411 11245 66699999999999999999999999999999987621 4689999
Q ss_pred ECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcC
Q 018829 144 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIG 221 (350)
Q Consensus 144 i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~g 221 (350)
++|.+.. ... .++.++|++|+...+..+ ++.+++.++.... ...+.++..+.+.++++.++
T Consensus 941 inG~~~~------~~~-~~~~igyv~Q~d~~~~~l----------TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 941 ISGFPKK------QET-FARISGYCEQNDIHSPQV----------TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred ECCccCC------hHH-hhhheEEEccccccCCCC----------cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 9997753 111 122356666654433222 4555555543211 11223445567889999999
Q ss_pred CCCccccccceeeeecchhhhhccCC-----CCCCHHHHHHHHHHHHh---------chhhcCCCC--------------
Q 018829 222 CEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 273 (350)
Q Consensus 222 l~~~~~~~~~~~~~vv~~~~~~~~~~-----~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------- 273 (350)
|.+ ..++.+ .+||||||||++||++| ||||++||.
T Consensus 1004 L~~-----------------~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~ 1066 (1470)
T PLN03140 1004 LDN-----------------LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066 (1470)
T ss_pred Chh-----------------HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 986 345554 58999999999999999 999999873
Q ss_pred --CceEEEEec--h-HHHhcccEEEEEecC-CeEeecCCcc
Q 018829 274 --DKPVVVVTH--G-DLLSLTDRARIRTYL-GELLGIPPAK 308 (350)
Q Consensus 274 --g~TVIiiTH--~-~~~~~aDri~v~l~~-G~iv~~g~~~ 308 (350)
|+|||++|| . .+...+|+++ +|++ |+++..|++.
T Consensus 1067 ~~g~tVI~t~Hq~~~~i~~~~D~vl-lL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1067 DTGRTVVCTIHQPSIDIFEAFDELL-LMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HCCCEEEEEeCCCCHHHHHhCCEEE-EEcCCCEEEEECCcc
Confidence 899999999 3 4678999996 5986 8999999863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-28 Score=252.32 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=127.4
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE-----------ECC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 146 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 146 (350)
++++++|+.... + |++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~~--~---L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNGF--K---LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCce--e---EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 358999975433 4 66699 899999999999999999999999999999 9999997 888
Q ss_pred EeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcc
Q 018829 147 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 226 (350)
Q Consensus 147 ~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 226 (350)
.++.. + .+........+++.+ .++.+.+.++..++.+++.. .+..+++.++++.+++..
T Consensus 146 ~~l~~-~-~~~~~~~~~~~~~~~-------q~~~~~p~~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~-- 204 (590)
T PRK13409 146 TELQN-Y-FKKLYNGEIKVVHKP-------QYVDLIPKVFKGKVRELLKK----------VDERGKLDEVVERLGLEN-- 204 (590)
T ss_pred hHHHH-H-HHHHhccCcceeecc-------cchhhhhhhhcchHHHHHHh----------hhHHHHHHHHHHHcCCch--
Confidence 77641 1 000000000112222 22333333333355555541 123456788999999987
Q ss_pred ccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec
Q 018829 227 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 282 (350)
Q Consensus 227 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH 282 (350)
.+++.+.+||||||||++||+|| ||||++||. ++|||+|||
T Consensus 205 ---------------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsH 269 (590)
T PRK13409 205 ---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 (590)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEecCC
Q 018829 283 --GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G 299 (350)
+.+..+||+++ +|+++
T Consensus 270 d~~~l~~~~D~v~-vl~~~ 287 (590)
T PRK13409 270 DLAVLDYLADNVH-IAYGE 287 (590)
T ss_pred CHHHHHHhCCEEE-EEeCC
Confidence 57778999995 48763
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=269.75 Aligned_cols=200 Identities=14% Similarity=0.116 Sum_probs=139.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+|+|+++++||+++|+||||||||||+|+|+|..... ..|.+|+|.++|+++... ....++.++|++|+...+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~~-----~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEEI-----KKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHHH-----HhhcCceeEEeccccccC
Confidence 66699999999999999999999999999999986311 117899999999886410 011123456666654443
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhc------CCCcHHHHHH-HHHHHHHcCCCCccccccceeeeecchhhhhccCCC
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIR------RSDSSSLRNR-MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 248 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~------~~~~~~~~~~-i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~ 248 (350)
..+ ++.+++.++..... ..++++..++ ++.+++.+||.+.... . +.+..+.
T Consensus 151 ~~l----------TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t-----------~-vg~~~~~ 208 (1394)
T TIGR00956 151 PHL----------TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNT-----------K-VGNDFVR 208 (1394)
T ss_pred CCC----------CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCc-----------e-eCCCcCC
Confidence 332 44455554432111 1122333333 4568999999762100 0 1134567
Q ss_pred CCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec---hHHHhcccEEEEEecCC
Q 018829 249 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 249 ~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH---~~~~~~aDri~v~l~~G 299 (350)
+||||||||++||+|| ||||++||. |+|||+++| ..+.+++|+++ +|++|
T Consensus 209 ~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~-~L~~G 287 (1394)
T TIGR00956 209 GVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI-VLYEG 287 (1394)
T ss_pred CCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE-EEeCC
Confidence 8999999999999999 999999873 789999999 36778999996 59999
Q ss_pred eEeecCCcccc--------ccCCCCCChHHHHH
Q 018829 300 ELLGIPPAKQI--------FDIPESSDPENELI 324 (350)
Q Consensus 300 ~iv~~g~~~~l--------~~~~~~~~~~~~~~ 324 (350)
+++..|+++++ +..|....+..++.
T Consensus 288 ~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~ 320 (1394)
T TIGR00956 288 YQIYFGPADKAKQYFEKMGFKCPDRQTTADFLT 320 (1394)
T ss_pred eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999877 44555555444443
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=205.87 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=132.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
++.++||+.+.++. +. |-++||+|.+||++.|+||||||||||+.-+.|.+.... ..+|+++++++++.
T Consensus 2 ~l~l~nvsl~l~g~---cL---La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~--- 70 (213)
T COG4136 2 MLCLKNVSLRLPGS---CL---LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLD--- 70 (213)
T ss_pred ceeeeeeeecCCCc---eE---EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeecc---
Confidence 57899999887642 34 666999999999999999999999999999999998433 45799999999986
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
...-.++++++.|||...|..+ |.||+. |.+... .+....+..+.+++++.|++.
T Consensus 71 ---~lPa~qRq~GiLFQD~lLFphlsVg~Nl~-----------fAlp~~--~KG~aRr~~a~aAL~~~gL~g-------- 126 (213)
T COG4136 71 ---MLPAAQRQIGILFQDALLFPHLSVGQNLL-----------FALPAT--LKGNARRNAANAALERSGLDG-------- 126 (213)
T ss_pred ---ccchhhhheeeeecccccccccccccceE-----------EecCcc--cccHHHHhhHHHHHHHhccch--------
Confidence 2222345677888887777655 555554 333211 122456677888999999998
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEech
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 283 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH~ 283 (350)
+.++.|.+||||||-||++-|+| |||+|.||. |.++|+|||+
T Consensus 127 ---------~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 127 ---------AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ---------hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 55999999999999999999998 999999862 9999999994
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=265.96 Aligned_cols=167 Identities=15% Similarity=0.167 Sum_probs=123.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+.+ .++|++|++..+
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~-----------------~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER-----------------SIAYVPQQAWIM 733 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC-----------------eEEEEeCCCccC
Confidence 667999999999999999999999999999999999 9999998642 346777776555
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHH-HHHHHHHHHc--CCCCccccccceeeeecchhhhhccCCCCCCH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR-NRMRCKAHKI--GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 252 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~-~~i~~~l~~~--gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 252 (350)
.+.+.+| +.++.........+..+ ..+.+.++.+ |+.. ..++.+..|||
T Consensus 734 ~~Tv~en-----------I~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t-----------------~i~~~g~~LSG 785 (1560)
T PTZ00243 734 NATVRGN-----------ILFFDEEDAARLADAVRVSQLEADLAQLGGGLET-----------------EIGEKGVNLSG 785 (1560)
T ss_pred CCcHHHH-----------HHcCChhhHHHHHHHHHHhhhHHHHHHhhccchH-----------------HhcCCCCCCCH
Confidence 4444444 44322100000000000 1122333444 4544 34788999999
Q ss_pred HHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCC
Q 018829 253 EKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 253 GqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~ 306 (350)
|||||++||||| |||+++||. |+|+|++|| -.....||+|+ +|++|++++.|+
T Consensus 786 GQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii-~l~~G~i~~~G~ 864 (1560)
T PTZ00243 786 GQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV-ALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEecC
Confidence 999999999999 999999873 789999999 34446799996 599999999999
Q ss_pred ccccccC
Q 018829 307 AKQIFDI 313 (350)
Q Consensus 307 ~~~l~~~ 313 (350)
+++++..
T Consensus 865 ~~~l~~~ 871 (1560)
T PTZ00243 865 SADFMRT 871 (1560)
T ss_pred HHHHHhC
Confidence 9988754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=253.39 Aligned_cols=209 Identities=11% Similarity=-0.007 Sum_probs=133.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++|++++|++. .+ |+|+||+|++|+++|||||||||||||+++|+|....+ .|..|+|.+.++.+...
T Consensus 176 ~~I~i~nls~~y~~~---~l---l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g~ 247 (718)
T PLN03073 176 KDIHMENFSISVGGR---DL---IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVGD 247 (718)
T ss_pred eeEEEceEEEEeCCC---EE---EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCCC
Confidence 469999999999642 34 66799999999999999999999999999999975221 28899998766543210
Q ss_pred c--ccccc-ccCCCccceeeccccccccchhhhhHhhHHHHHhhh-----------------hhhhhhhcCCCcHHHHHH
Q 018829 153 Y--FLQEY-TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV-----------------RHGELVIRRSDSSSLRNR 212 (350)
Q Consensus 153 ~--~~~~~-~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v-----------------~~~~~~~~~~~~~~~~~~ 212 (350)
. ..+.. ........+ .....++++|+..+.......+. ............-..+++
T Consensus 248 ~~t~~~~v~~~~~~~~~~----~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 248 DTTALQCVLNTDIERTQL----LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCHHHHHHHhhHHHHHH----HHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 00000 000000000 00001122222211110000110 000000000111234566
Q ss_pred HHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------
Q 018829 213 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 273 (350)
Q Consensus 213 i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------- 273 (350)
+.+++..+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 324 ~~~~L~~lgl~~~----------------~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L 387 (718)
T PLN03073 324 AASILAGLSFTPE----------------MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL 387 (718)
T ss_pred HHHHHHHCCCChH----------------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 7778888888642 34788999999999999999999 999999984
Q ss_pred ---CceEEEEec--hHHHhcccEEEEEecCCeEe-ecCCcccc
Q 018829 274 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQI 310 (350)
Q Consensus 274 ---g~TVIiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l 310 (350)
+.|||+||| +.+..+||+++ +|++|++. ..|+.+.+
T Consensus 388 ~~~~~tviivsHd~~~l~~~~d~i~-~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 388 LKWPKTFIVVSHAREFLNTVVTDIL-HLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHcCCEEEEEECCHHHHHHhCCEEE-EEECCEEEEeCCCHHHH
Confidence 789999999 57778999996 59999996 56665544
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=209.73 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=101.9
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccc
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 157 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 157 (350)
.||+++|++ ..+ ++++ |+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 4 ~~l~~~~~~---~~~---l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i-------- 63 (177)
T cd03222 4 PDCVKRYGV---FFL---LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGITP-------- 63 (177)
T ss_pred CCeEEEECC---EEE---EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEEE--------
Confidence 689999975 344 4554 9999999999999999999999999999999 9999999988543
Q ss_pred cccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeec
Q 018829 158 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 237 (350)
Q Consensus 158 ~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv 237 (350)
++.+|+
T Consensus 64 --------~~~~q~------------------------------------------------------------------ 69 (177)
T cd03222 64 --------VYKPQY------------------------------------------------------------------ 69 (177)
T ss_pred --------EEEccc------------------------------------------------------------------
Confidence 121110
Q ss_pred chhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------C-ceEEEEec--hHHHhcc
Q 018829 238 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GDLLSLT 289 (350)
Q Consensus 238 ~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g-~TVIiiTH--~~~~~~a 289 (350)
. .||||||||++||||| |||+++||. + .|||++|| ..+..+|
T Consensus 70 ----~------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 70 ----I------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred ----C------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 0 1999999999999999 999999873 3 89999999 5677899
Q ss_pred cEEEEEecCCeEeecCCccccccCCC
Q 018829 290 DRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 290 Dri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
|+++ +|+++-. ..+++..|.
T Consensus 140 d~i~-~l~~~~~-----~~~~~~~~~ 159 (177)
T cd03222 140 DRIH-VFEGEPG-----VYGIASQPK 159 (177)
T ss_pred CEEE-EEcCCCc-----cceeccCCc
Confidence 9996 4876643 334555554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-27 Score=265.14 Aligned_cols=204 Identities=14% Similarity=0.159 Sum_probs=143.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc---ccEEEECCEeCCCCccccccccCCCccceeeccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 172 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~ 172 (350)
|+|+|+.|++||+++|+||||||||||+|+|+|.++ |+ +|+|.++|+++.. .. .++.++|+.|+.
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~~------~~-~~~~i~yv~Q~d 248 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLNE------FV-PRKTSAYISQND 248 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEechh------hc-ccceeEEecccc
Confidence 666999999999999999999999999999999998 77 9999999998751 11 133567777765
Q ss_pred cccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcH----------H--------------HHHHHHHHHHHcCCCCccc
Q 018829 173 RSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSS----------S--------------LRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 173 ~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~----------~--------------~~~~i~~~l~~~gl~~~~~ 227 (350)
..+..+ |.|++.+.... ..............+. + ....+..+++.+||++..
T Consensus 249 ~~~~~lTV~EtL~f~a~~--~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~- 325 (1470)
T PLN03140 249 VHVGVMTVKETLDFSARC--QGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK- 325 (1470)
T ss_pred cCCCcCcHHHHHHHHHHh--cCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc-
Confidence 555443 55555443211 0000000000000000 0 012356789999997511
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiT 281 (350)
... +.++.+.+||||||||++||++| ||||++||. |+|+|+++
T Consensus 326 ------~t~-----vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~ 394 (1470)
T PLN03140 326 ------DTI-----VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSL 394 (1470)
T ss_pred ------Cce-----eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 000 23567889999999999999999 999999874 78999999
Q ss_pred c---hHHHhcccEEEEEecCCeEeecCCccccc--------cCCCCCChHHHHHHH
Q 018829 282 H---GDLLSLTDRARIRTYLGELLGIPPAKQIF--------DIPESSDPENELIIV 326 (350)
Q Consensus 282 H---~~~~~~aDri~v~l~~G~iv~~g~~~~l~--------~~~~~~~~~~~~~~~ 326 (350)
| ..+..++|+|+ +|++|+++..|+.+++. ..|....++.++..+
T Consensus 395 Hqp~~~i~~lfD~vi-lL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v 449 (1470)
T PLN03140 395 LQPAPETFDLFDDII-LLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449 (1470)
T ss_pred cCCCHHHHHHhheEE-EeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHh
Confidence 9 36789999996 59999999999998874 456666666666543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=200.50 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=102.9
Q ss_pred EEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 76 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 76 ~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
+++++++.|... .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~~~~~~~~~---~~---l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~---- 65 (157)
T cd00267 1 EIENLSFRYGGR---TA---LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAK---- 65 (157)
T ss_pred CeEEEEEEeCCe---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc----
Confidence 368999999642 34 677999999999999999999999999999999999 999999999977640
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
.. ... ....+++-
T Consensus 66 -----------~~-------------------------------------~~~-------~~~~i~~~------------ 78 (157)
T cd00267 66 -----------LP-------------------------------------LEE-------LRRRIGYV------------ 78 (157)
T ss_pred -----------CC-------------------------------------HHH-------HHhceEEE------------
Confidence 00 000 00011111
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHHHhc
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~~~~ 288 (350)
.+||+||+||++||||+ |||+++||. ++|+|++|| ..+..+
T Consensus 79 ------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 79 ------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred ------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 12999999999999999 999999873 589999999 577788
Q ss_pred ccEEEEEecCCe
Q 018829 289 TDRARIRTYLGE 300 (350)
Q Consensus 289 aDri~v~l~~G~ 300 (350)
||+++ ++++|+
T Consensus 147 ~d~i~-~l~~g~ 157 (157)
T cd00267 147 ADRVI-VLKDGK 157 (157)
T ss_pred CCEEE-EEeCcC
Confidence 99996 488774
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=203.01 Aligned_cols=188 Identities=16% Similarity=0.154 Sum_probs=139.7
Q ss_pred CcEEEEEEEEEEC----CCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 73 SLTDAKNKILSYT----PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 73 ~~l~i~~l~~~y~----~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
..+.++|++|+|. ++-..++ ++++||+++.|||+++-||||||||||+|+|++-|. |++|+|++.-..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g 74 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEG 74 (235)
T ss_pred ceeeeecchhheEeeecCCEEeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCc
Confidence 3588999999883 2323455 555999999999999999999999999999999999 999999996543
Q ss_pred CCCCcc-ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcc
Q 018829 149 GDGTYF-LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 226 (350)
Q Consensus 149 i~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 226 (350)
-+.... ...+ -++.-.+.-++||.|.+...+. ...+-++.++.. ++.+.+..+.++..++.++.+...
T Consensus 75 ~~vdl~~a~pr--------~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlper- 144 (235)
T COG4778 75 EWVDLVTAEPR--------EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPER- 144 (235)
T ss_pred chhhhhccChH--------HHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHH-
Confidence 211000 0000 1111122345666666666555 334445544443 345667888999999999999886
Q ss_pred ccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEe
Q 018829 227 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 281 (350)
Q Consensus 227 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiT 281 (350)
++.-.|..+||||||||.|||.+ ||||++||. |..+|=|-
T Consensus 145 ---------------LW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIF 209 (235)
T COG4778 145 ---------------LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIF 209 (235)
T ss_pred ---------------HhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEee
Confidence 46889999999999999999998 999999974 89999999
Q ss_pred ch-HHH-hcccEEE
Q 018829 282 HG-DLL-SLTDRAR 293 (350)
Q Consensus 282 H~-~~~-~~aDri~ 293 (350)
|| .+. ..|||+.
T Consensus 210 HDeevre~vadR~~ 223 (235)
T COG4778 210 HDEEVREAVADRLL 223 (235)
T ss_pred ccHHHHHHHhhhee
Confidence 94 444 6799994
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=202.79 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=97.9
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceee
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 169 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~ 169 (350)
+++ |+++||+|++|++++|+||||||||||+|+|. +++|++.++|..-. + .+..+.|
T Consensus 8 ~~~---l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~-------~--~~~~~~~-- 64 (176)
T cd03238 8 VHN---LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPK-------F--SRNKLIF-- 64 (176)
T ss_pred eee---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccc-------c--ccccEEE--
Confidence 456 55599999999999999999999999999984 34799998764211 0 0000111
Q ss_pred ccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCC
Q 018829 170 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 249 (350)
Q Consensus 170 ~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 249 (350)
+.| .++++.+++... .+++++.+
T Consensus 65 ---------~~q--------------------------------~~~l~~~~L~~~----------------~~~~~~~~ 87 (176)
T cd03238 65 ---------IDQ--------------------------------LQFLIDVGLGYL----------------TLGQKLST 87 (176)
T ss_pred ---------EhH--------------------------------HHHHHHcCCCcc----------------ccCCCcCc
Confidence 111 245778888652 14788999
Q ss_pred CCHHHHHHHHHHHHh-----------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeE
Q 018829 250 SDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 250 LSGGqrQRvaIArAL-----------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~i 301 (350)
||||||||++||||| |||+++||. |+|||++|| ......||+++ +|.+|+.
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~-~l~~g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWII-DFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EECCCCC
Confidence 999999999999998 999999863 899999999 33346799995 5977554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=234.25 Aligned_cols=192 Identities=16% Similarity=0.110 Sum_probs=134.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+|.++|++++|++ . +. |+++||+|.+|+++||||+||||||||+|+|+|... |++|+|...+. .
T Consensus 1 m~~i~~~~ls~~~g~-~--~l---~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~-- 66 (530)
T COG0488 1 MSMITLENLSLAYGD-R--PL---LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-L-- 66 (530)
T ss_pred CceEEEeeeEEeeCC-c--ee---ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-c--
Confidence 357999999999964 3 33 677999999999999999999999999999999999 99999998752 1
Q ss_pred CccccccccCCCccceeecccccccc-chhhhhHhhHHHH---H---hhhh----------hhhh--hhcCCCcHHHHHH
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSD-DASDNINMIKLWI---M---EGVR----------HGEL--VIRRSDSSSLRNR 212 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~v~q~~~l~~~~v---~---~~v~----------~~~~--~~~~~~~~~~~~~ 212 (350)
.+++..|+...... .|.+........+ . +.+. +... .......-..+.+
T Consensus 67 ------------~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 67 ------------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred ------------eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 12455555444332 1222221110000 0 0000 0000 0000111223567
Q ss_pred HHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------
Q 018829 213 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 273 (350)
Q Consensus 213 i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------- 273 (350)
+..++..+|+.+ . ++...+||||||.|++||+|| ||||+.||-
T Consensus 135 ~~~~L~gLg~~~-----------------~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 135 AEEALLGLGFPD-----------------E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred HHHHHhcCCCCc-----------------c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 778888888887 3 678899999999999999999 999999872
Q ss_pred ----CceEEEEec--hHHHhcccEEEEEecCCeEeec-CCccc
Q 018829 274 ----DKPVVVVTH--GDLLSLTDRARIRTYLGELLGI-PPAKQ 309 (350)
Q Consensus 274 ----g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~-g~~~~ 309 (350)
| |||+||| .++-..|++|+ .++.|++... |.-+.
T Consensus 197 ~~~~g-tviiVSHDR~FLd~V~t~I~-~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 197 KRYPG-TVIVVSHDRYFLDNVATHIL-ELDRGKLTPYKGNYSS 237 (530)
T ss_pred HhCCC-cEEEEeCCHHHHHHHhhheE-EecCCceeEecCCHHH
Confidence 6 9999999 57789999995 6999987655 44433
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=205.56 Aligned_cols=161 Identities=12% Similarity=0.153 Sum_probs=120.7
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++.+|++.+-+. .+. +.++||++.+||++-|.||||||||||+|+|+|+.+ |++|+|.++|..+..
T Consensus 2 ~L~a~~L~~~R~e---~~l---f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~-- 68 (209)
T COG4133 2 MLEAENLSCERGE---RTL---FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN-- 68 (209)
T ss_pred cchhhhhhhccCc---cee---ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc--
Confidence 5678888877654 234 566999999999999999999999999999999999 999999999987751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhh-HHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~-~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
..........|+.-+..+- ..++.||+.|....+.. .....+.++++.+||..
T Consensus 69 --------------~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g-------- 122 (209)
T COG4133 69 --------------VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAG-------- 122 (209)
T ss_pred --------------chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCccc--------
Confidence 0000001111111111111 22667777776654432 23456788899999998
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 282 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH 282 (350)
+.+.+.++||-|||+|+||||-+ |||+++||. |--||..||
T Consensus 123 ---------~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 123 ---------LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred ---------ccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56889999999999999999998 999999984 667899999
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=235.60 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=151.3
Q ss_pred cEEEEEEEEEECCCc--eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~--~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.+++++.....+. ..++ |++||.++++||++||+||||||||||+++|+|-...+. ..+|+|.+||+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRDS 99 (613)
T ss_pred eeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCch
Confidence 478889998875442 2345 666999999999999999999999999999999997432 578999999965431
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh--hcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~--~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
...++..+|+.||...+..+ ||.|.+.+.... ....+.++.+++++++++.+|+..
T Consensus 100 -------~~~~~~s~yV~QdD~l~~~L----------TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~----- 157 (613)
T KOG0061|consen 100 -------RSFRKISGYVQQDDVLLPTL----------TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK----- 157 (613)
T ss_pred -------hhhhheeEEEcccccccccc----------cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-----
Confidence 11222446666665544333 555555554322 122356788899999999999985
Q ss_pred cceeeeecchhhhhccCC-----CCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEE
Q 018829 230 VNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 279 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~-----~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIi 279 (350)
..+... ..+|||||+|++||.-| ||||++||. |+|||+
T Consensus 158 ------------~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~ 225 (613)
T KOG0061|consen 158 ------------CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVIC 225 (613)
T ss_pred ------------hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEE
Confidence 334444 46999999999999998 999999873 999999
Q ss_pred Eec---hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 280 VTH---GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 280 iTH---~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
+-| ..+.++-|+++ +|.+|+++..|+++++
T Consensus 226 tIHQPss~lf~lFD~l~-lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 226 TIHQPSSELFELFDKLL-LLSEGEVVYSGSPREL 258 (613)
T ss_pred EEeCCcHHHHHHHhHhh-hhcCCcEEEecCHHHH
Confidence 999 57889999996 5999999999999765
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=193.41 Aligned_cols=128 Identities=14% Similarity=0.188 Sum_probs=91.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ......+..+++++++...+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~ 71 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISD----IDIEELRRRIGYVPQDPQLF 71 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTT----SHHHHHHHTEEEEESSHCHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccc----cccccccccccccccccccc
Confidence 567999999999999999999999999999999999 999999999999862 00111122344555543333
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 255 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 255 (350)
..+ ++.++ ...+++.++++.+++.+... ...++.+..||+|||
T Consensus 72 ~~~----------tv~~~--------------~~~~~~~~~l~~l~~~~~~~-------------~~~~~~~~~LS~Ge~ 114 (137)
T PF00005_consen 72 PGL----------TVREN--------------ESDERIEEVLKKLGLEDLLD-------------RKIGQRASSLSGGEK 114 (137)
T ss_dssp TTS----------BHHHH--------------HHHHHHHHHHHHTTHGGGTG-------------SBGTSCGGGSCHHHH
T ss_pred ccc----------ccccc--------------cccccccccccccccccccc-------------cccccccchhhHHHH
Confidence 222 22222 23445677788887655110 023555599999999
Q ss_pred HHHHHHHHh---------chhhc
Q 018829 256 YNQIVATTF---------NCPYL 269 (350)
Q Consensus 256 QRvaIArAL---------DEPts 269 (350)
||++||||| ||||+
T Consensus 115 ~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 115 QRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC
Confidence 999999999 99985
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=202.10 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=63.4
Q ss_pred HHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC---------
Q 018829 214 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--------- 273 (350)
Q Consensus 214 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~--------- 273 (350)
.++++.+++.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 118 ~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 118 LGFLVDVGLGYL----------------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HHHHHHCCCCcc----------------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 567899999752 24889999999999999999998 999999873
Q ss_pred -------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecC
Q 018829 274 -------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIP 305 (350)
Q Consensus 274 -------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g 305 (350)
|.|+|++|| .....+||+++ +| ++|+|+++|
T Consensus 182 l~~~~~~g~tii~itH~~~~~~~~d~i~-~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 182 LKRLRDLGNTVLVVEHDEDTIRAADHVI-DIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCEEEEEEeCHHHHHhCCEEE-EeCCCccccCCEEEecC
Confidence 789999999 33346899996 59 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-25 Score=239.25 Aligned_cols=196 Identities=14% Similarity=0.167 Sum_probs=158.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
..+.++++++.|+.... |+++ +||.|++||+.|+.|+|||||||++++|.|..+ |++|++++.|.++...
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~---ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~~ 632 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRG---LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITVS 632 (885)
T ss_pred ceEEEcceeeeecchhh--hhcc---eEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCccccc
Confidence 45889999999975432 7555 999999999999999999999999999999999 9999999999887621
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .....++.+||++|.......+ ..|++.++.. .++.++.+..+.+..+++.+++.+
T Consensus 633 ~---~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar------------lrG~~~~di~~~v~~ll~~~~L~~------- 690 (885)
T KOG0059|consen 633 T---DFQQVRKQLGYCPQFDALWEELTGREHLEFYAR------------LRGLPRSDIGSAIEKLLRLVGLGP------- 690 (885)
T ss_pred c---chhhhhhhcccCCchhhhhhhccHHHHHHHHHH------------HcCCChhHHHHHHHHHHHHcCChh-------
Confidence 1 1111244667888765554444 4444444332 224456678888999999999998
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
.+++....+|||+|+|+++|.|+ |||++|+|+ ++.+|+.|| ++
T Consensus 691 ----------~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 691 ----------YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred ----------hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56888999999999999999999 999999986 559999999 78
Q ss_pred HHhcccEEEEEecCCeEeecCCccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
+..+|||+++ |.+|++...|+++++-
T Consensus 761 ~EaLCtR~aI-mv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 761 AEALCTRTAI-MVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHhhhhhe-eecCeeEEecChHHHH
Confidence 8899999975 9999999999998775
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=207.63 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHccchh--c-ccC---CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHH
Q 018829 47 LVDQRRRDAVFREVLQSYDQ--L-RTR---IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 120 (350)
Q Consensus 47 ~~~~~~~~~~~~~~l~~~~~--~-~~~---~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKS 120 (350)
...++.+..++.++-..+.. . +.. .-..|+++|+.|.|.+.... +..||++|++||++-|+|.||||||
T Consensus 289 l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~Fh-----vgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFH-----VGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCcccce-----ecceeeEEecCcEEEEECCCCCcHH
Confidence 34445555566655443321 1 111 12359999999999865433 5569999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 018829 121 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 200 (350)
Q Consensus 121 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~ 200 (350)
||+++|.|+++ |++|+|.+||+++. +-.+.+.|.....|+.+..+|...+
T Consensus 364 T~~~LLtGL~~-----PqsG~I~ldg~pV~---------------~e~ledYR~LfSavFsDyhLF~~ll---------- 413 (546)
T COG4615 364 TLAMLLTGLYQ-----PQSGEILLDGKPVS---------------AEQLEDYRKLFSAVFSDYHLFDQLL---------- 413 (546)
T ss_pred HHHHHHhcccC-----CCCCceeECCccCC---------------CCCHHHHHHHHHHHhhhHhhhHhhh----------
Confidence 99999999999 99999999999987 3345566666666777777766532
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--chhhcCCCC-----
Q 018829 201 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCPYLSFRD----- 273 (350)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEPts~Ld~----- 273 (350)
+.+.....+.+..+++.+.+.+.. .|.|. .-.+-.||-|||.|+|+--|| +.|..-+|+
T Consensus 414 --~~e~~as~q~i~~~LqrLel~~kt--------sl~d~----~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQ 479 (546)
T COG4615 414 --GPEGKASPQLIEKWLQRLELAHKT--------SLNDG----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479 (546)
T ss_pred --CCccCCChHHHHHHHHHHHHhhhh--------cccCC----cccccccccchHHHHHHHHHHHhhCCeEEeehhhccC
Confidence 111113345566666666665422 01111 123457999999999999998 444444332
Q ss_pred -------------------CceEEEEechH-HHhcccEEEEEecCCeEeecC
Q 018829 274 -------------------DKPVVVVTHGD-LLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 274 -------------------g~TVIiiTH~~-~~~~aDri~v~l~~G~iv~~g 305 (350)
|+||+.||||+ --..|||+. .|.+|++++.-
T Consensus 480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll-~~~~G~~~e~t 530 (546)
T COG4615 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLL-EMRNGQLSELT 530 (546)
T ss_pred ChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHH-HHhcCceeecc
Confidence 99999999954 446799995 69999999874
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-24 Score=191.83 Aligned_cols=232 Identities=13% Similarity=0.188 Sum_probs=166.5
Q ss_pred CCcEEEEEEEEEEC-CCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 72 GSLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 72 ~~~l~i~~l~~~y~-~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++.++|++..+. ...+++++++ +|+++.+||+-++||+||||||-..+.|.|..+++- ..+.-+..+++.++-
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~---v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW-~vTADR~Rf~~idLL 76 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDR---VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNW-RVTADRMRFDDIDLL 76 (330)
T ss_pred CCcccccceEEEEecCCCceEeeee---eeeeeccceeeeeeccCCCchhHHHHHHhcccccce-EEEhhhcccccchhh
Confidence 46789999999984 3345788666 999999999999999999999999999999987432 144566777777765
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhh-hhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~-~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.....+++.+-.+.+++.||++..-.+- ..-...-+.+||-.. ++..-+..-.-.+.++.++|+++|+.+..
T Consensus 77 ~L~Pr~RRk~ig~~isMIFQeP~sCLDP----S~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk--- 149 (330)
T COG4170 77 RLSPRERRKLVGHNVSMIFQEPQSCLDP----SERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--- 149 (330)
T ss_pred cCChHHhhhhhccchhhhhcCchhhcCh----HHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH---
Confidence 3333333334444566666665432111 000000111222110 11000111123456788999999997632
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+....||.+|.-|+-|+|+||.|+ ||||.++++ |.||++++|
T Consensus 150 -----------DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D 218 (330)
T COG4170 150 -----------DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218 (330)
T ss_pred -----------HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEccc
Confidence 267899999999999999999999 999999653 899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 326 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 326 (350)
..+.+.||++.| |+.|+-++.++.+++++.|+++|+..++..+
T Consensus 219 l~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 219 LQMISQWADKINV-LYCGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred HHHHHHHhhheEE-EEecccccccchhHHhcCCCCchHHHHHHhC
Confidence 467799999975 9999999999999999999999998877654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=214.89 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=132.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
..+++++|+++.|+++..+ ++++||.|.+|+.+||+||||+|||||+|+|+|... |.+|.|.+.-. +..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l-----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~~-v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGET-VKI 387 (530)
T ss_pred CeeEEEeccccccCCCcee-----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCCc-eEE
Confidence 4579999999999765333 667999999999999999999999999999999999 99999998542 332
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+|..|+..... . ..++.+.+..... ...+..++..|..+++..+.
T Consensus 388 --------------gyf~Q~~~~l~---~------~~t~~d~l~~~~~-------~~~e~~~r~~L~~f~F~~~~----- 432 (530)
T COG0488 388 --------------GYFDQHRDELD---P------DKTVLEELSEGFP-------DGDEQEVRAYLGRFGFTGED----- 432 (530)
T ss_pred --------------EEEEehhhhcC---c------cCcHHHHHHhhCc-------cccHHHHHHHHHHcCCChHH-----
Confidence 44444431110 0 0022233321110 11267788999999998742
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHh
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~ 287 (350)
..+++..||||||-|+++|+.+ ||||..||- .-|||+||| .++.+
T Consensus 433 -----------~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 433 -----------QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred -----------HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 4789999999999999999998 999999872 669999999 57889
Q ss_pred cccEEEEEecCCeEeec-CCcc
Q 018829 288 LTDRARIRTYLGELLGI-PPAK 308 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~-g~~~ 308 (350)
+|+++++ +++ ++... |..+
T Consensus 502 va~~i~~-~~~-~~~~~~g~y~ 521 (530)
T COG0488 502 VATRIWL-VED-KVEEFEGGYE 521 (530)
T ss_pred hcceEEE-EcC-ceeEcCCCHH
Confidence 9999975 776 55444 5443
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=195.26 Aligned_cols=183 Identities=17% Similarity=0.086 Sum_probs=115.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHH-----hccCCCCCCCccc-----------EEEECCEeCCCCccccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERA-----------QVTYNSSVGDGTYFLQEYT 159 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~-----gl~~~~~~~p~~G-----------~I~i~G~~i~~~~~~~~~~ 159 (350)
|+|+|++||.|..++|+|+||||||||++.+. ..+......|..+ -|.++..++..+... .
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs---~ 87 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS---N 87 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC---c
Confidence 78899999999999999999999999999662 2111100002222 244554444311000 0
Q ss_pred cCCCccceeeccccc----------------cccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 018829 160 IPRGSNSFSLYDTRS----------------LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 222 (350)
Q Consensus 160 ~~~~~~~~~~~d~~~----------------~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl 222 (350)
.. .+..++++.|. ...+..+++..... ++.+++.+.... . ..+++.++++.+||
T Consensus 88 ~~--ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~-~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PA--TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------P-KIARKLQTLCDVGL 158 (261)
T ss_pred HH--HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------h-hHHHHHHHHHHcCC
Confidence 00 00111221111 11122233333332 555555442221 1 12456778999999
Q ss_pred CCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC----------------C
Q 018829 223 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------D 274 (350)
Q Consensus 223 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~----------------g 274 (350)
... .+++.+.+|||||+||++|||+| ||||++||. |
T Consensus 159 ~~l----------------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g 222 (261)
T cd03271 159 GYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG 222 (261)
T ss_pred chh----------------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 762 24888999999999999999998 999999863 8
Q ss_pred ceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCc
Q 018829 275 KPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPA 307 (350)
Q Consensus 275 ~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~ 307 (350)
.|||++|| -...+.||+++ .| ++|+|++.|++
T Consensus 223 ~tvIiitH~~~~i~~aD~ii-~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 223 NTVVVIEHNLDVIKCADWII-DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCC
Confidence 99999999 33445799995 59 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-25 Score=193.29 Aligned_cols=186 Identities=16% Similarity=0.184 Sum_probs=141.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
++++++|...- . |-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.++..
T Consensus 3 l~qln~v~~~t-----R-----L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~l~~-- 64 (248)
T COG4138 3 LMQLNDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQPLEA-- 64 (248)
T ss_pred eeeeccccccc-----c-----ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcchhH--
Confidence 56777777542 2 45589999999999999999999999999999998 578999999998851
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.| +-.|.-|.......+ |+|.+.+. .+.++....+.++..++++++
T Consensus 65 -~~~~eLAr-hRAYLsQqq~p~f~mpV~~YL~L~-----------------qP~~~~a~~i~~i~~~L~l~D-------- 117 (248)
T COG4138 65 -WSATELAR-HRAYLSQQQTPPFAMPVWHYLTLH-----------------QPDKTRTELLNDVAGALALDD-------- 117 (248)
T ss_pred -HhHhHHHH-HHHHHhhccCCcchhhhhhhhhhc-----------------CchHHHHHHHHHHHhhhcccc--------
Confidence 11111111 113443333222223 44444332 123556677888899999998
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh----------------chhhcCCC----------------CCceEEEE
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFR----------------DDKPVVVV 280 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPts~Ld----------------~g~TVIii 280 (350)
.+.+..++|||||-|||-+|-.. |||.++|| .|.+|||.
T Consensus 118 ---------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 118 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ---------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 45899999999999999999875 99999976 19999999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.| +-..+.||++++ ++.|+++..|..+|++..+
T Consensus 189 ~HDLNhTLrhA~~~wL-L~rG~l~~~G~~~eVlt~~ 223 (248)
T COG4138 189 SHDLNHTLRHAHRAWL-LKRGKLLASGRREEVLTPP 223 (248)
T ss_pred ccchhhHHHHHHHHHH-HhcCeEEeecchhhhcChH
Confidence 99 677788999986 9999999999999987753
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=181.96 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=97.4
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCC----CCCcccEEEECCEeCCCCccccccccCCCccceeeccc
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 172 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~----~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~ 172 (350)
++++|++++| +++|+||||||||||+++|+|+..... -.+..|++.+.|+++. . ...+..+++++|+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~v~~vfq~~ 85 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR------K-PANFAEVTLTFDNS 85 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC------C-CCceEEEEEEEEcC
Confidence 5599999999 999999999999999999999986110 0122345666665442 0 00122345555544
Q ss_pred cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCH
Q 018829 173 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 252 (350)
Q Consensus 173 ~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 252 (350)
..+ ++.. ..+++.++++. .+ ..++.+.+|||
T Consensus 86 ~~~--------------------~~~~---------~~~~~~~~l~~---~~-----------------~~~~~~~~LS~ 116 (197)
T cd03278 86 DGR--------------------YSII---------SQGDVSEIIEA---PG-----------------KKVQRLSLLSG 116 (197)
T ss_pred CCc--------------------eeEE---------ehhhHHHHHhC---CC-----------------ccccchhhcCH
Confidence 332 0000 12345555665 33 24778899999
Q ss_pred HHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEec
Q 018829 253 EKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTY 297 (350)
Q Consensus 253 GqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~ 297 (350)
|||||++||++| |||+++||+ +.|||++|| .....+||+++. +.
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~-~~ 189 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYG-VT 189 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEE-EE
Confidence 999999999974 999999863 789999999 344578999965 43
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=196.80 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=120.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
...++++|++..-+++... |++.||+|++|+.+.|.||||||||||+|+|+|+++ .-+|+|.+-...
T Consensus 390 ~~~i~~~nl~l~~p~~~~l-----l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~~~--- 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTL-----LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPADS--- 456 (604)
T ss_pred cceeEEeeeeEECCCCCee-----eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCCCC---
Confidence 4679999999998876544 677999999999999999999999999999999999 778888764111
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..-|.+|.+..- ..+..+-+.++.... .-..+.+.++|.++||.+...+
T Consensus 457 ------------~~lflpQ~PY~p-----------~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~r--- 505 (604)
T COG4178 457 ------------ALLFLPQRPYLP-----------QGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAER--- 505 (604)
T ss_pred ------------ceEEecCCCCCC-----------CccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHH---
Confidence 012444443322 223445555443321 1234567788999999873210
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 286 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~ 286 (350)
+|+ ..+=-..||+|||||+|+||.| ||.|++||+ +.|||-|.| ..+.
T Consensus 506 -----l~~---~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 506 -----LDE---EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred -----Hhc---cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 000 0111235999999999999998 999999874 899999999 5666
Q ss_pred hcccEE
Q 018829 287 SLTDRA 292 (350)
Q Consensus 287 ~~aDri 292 (350)
.+.++.
T Consensus 578 ~~h~~~ 583 (604)
T COG4178 578 NFHSRQ 583 (604)
T ss_pred HHHhhh
Confidence 666666
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-22 Score=184.82 Aligned_cols=179 Identities=10% Similarity=-0.009 Sum_probs=105.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECCE-eCCCCccccccccCCCccceeeccccccccchhhhh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 183 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~-~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~ 183 (350)
..+++||||||||||||+++|++++. +. .|++.+.+. ++-. ........+..+++.+|+..... ++...
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~--~~~~~~~~~~~v~~~fq~~~~~~--~~~~~ 95 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIY--KRGQAGITKASVTIVFDNSDKSQ--SPIGF 95 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhh--cCCCCCCcEEEEEEEEEcCCccc--Ccccc
Confidence 34999999999999999999999998 65 357777665 3210 00011122224556666532110 00000
Q ss_pred HhhHH-HHHhhhhhhhhhhcC-CCcHHHHHHHHHHHHHcCCCCc-cc--cccceeeeecchhhhhccCCCCCCHHHHHHH
Q 018829 184 NMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPS-VI--RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 258 (350)
Q Consensus 184 ~l~~~-~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~-~~--~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRv 258 (350)
.+.+. ++..++..+...... .......+++.++++.+++..+ .. -+=+-|.-+++..+..+.++.+||+|||||+
T Consensus 96 ~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~ 175 (251)
T cd03273 96 ENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLV 175 (251)
T ss_pred cCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHH
Confidence 00011 223333322211100 1123345788889999998621 00 0000001112222356788999999999999
Q ss_pred HHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEE
Q 018829 259 IVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 293 (350)
Q Consensus 259 aIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~ 293 (350)
+||||| ||||++||. |.|+|+||| ..+...||+++
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 999965 999999863 889999999 67777899994
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=189.79 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=146.4
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..+.+++++++..- . ++|+||++++||++||.|--|||+|-|+++|.|..+ +.+|+|.++|+++.
T Consensus 260 ~~~~l~v~~l~~~~-----~-----~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~ 324 (500)
T COG1129 260 GEPVLEVRNLSGGG-----K-----VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVR 324 (500)
T ss_pred CCcEEEEecCCCCC-----c-----eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEcc
Confidence 35678899888542 2 667999999999999999999999999999999888 89999999999986
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhh-hhc---CCCcHHHHHHHHHHHHHcCCCCcc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-VIR---RSDSSSLRNRMRCKAHKIGCEPSV 226 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~-~~~---~~~~~~~~~~i~~~l~~~gl~~~~ 226 (350)
..+ ...--+..++|++.|.... +++. ..++.+|+.++.. ... ..+....++.+.++.+.+++...-
T Consensus 325 ~~s---p~~Ai~~Gi~~v~EDRk~~-Gl~l------~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 325 IRS---PRDAIKAGIAYVPEDRKSE-GLVL------DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred CCC---HHHHHHcCCEeCCcccccC-cCcC------CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC
Confidence 322 1111233678888876532 2211 1134444444411 111 234455566778888889886421
Q ss_pred ccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC----------------CCceEEEEe
Q 018829 227 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVT 281 (350)
Q Consensus 227 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld----------------~g~TVIiiT 281 (350)
.+.....||||-||+|.|||.| ||||.++| +|++||+||
T Consensus 395 ----------------~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iS 458 (500)
T COG1129 395 ----------------PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458 (500)
T ss_pred ----------------ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEe
Confidence 3678899999999999999999 99999975 299999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
- .++..+||||+ +|++|+++..-+.++
T Consensus 459 SElpEll~~~DRIl-Vm~~Gri~~e~~~~~ 487 (500)
T COG1129 459 SELPELLGLSDRIL-VMREGRIVGELDREE 487 (500)
T ss_pred CChHHHHhhCCEEE-EEECCEEEEEecccc
Confidence 9 68889999996 599999998654443
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=172.22 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=102.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEe-CCcEEEEEcCCCChHHHHHHHHHh-ccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~-~Ge~iaIvGpnGsGKSTLl~~I~g-l~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.|+++|+. +|... ++++|+.. +|++++|+||||||||||+++|++ ++. +..+....+. ...
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~-~~~- 67 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQEN-LRS- 67 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----Cccccccchh-HHH-
Confidence 37788887 66532 23677654 589999999999999999999996 443 3434333320 000
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ........+++.++...... .+.+.. ..+.....+.+ .+...++.+
T Consensus 68 --~~-~~~~~~~~v~~~f~~~~~~~-~~~r~~-------------------gl~~~~~~~~~--~l~~g~l~~------- 115 (213)
T cd03279 68 --VF-APGEDTAEVSFTFQLGGKKY-RVERSR-------------------GLDYDQFTRIV--LLPQGEFDR------- 115 (213)
T ss_pred --Hh-cCCCccEEEEEEEEECCeEE-EEEEec-------------------CCCHHHHHHhh--hhhhcchHH-------
Confidence 00 00011113445555432111 111111 11111111111 233444444
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-------------------chhhcCCCC----------------Cce
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKP 276 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------------DEPts~Ld~----------------g~T 276 (350)
++++.+..||+||+||++||||| |||+++||. +.|
T Consensus 116 ----------~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 116 ----------FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred ----------HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 55889999999999999999965 899999763 789
Q ss_pred EEEEec--hHHHhcccEEEEEecCCe
Q 018829 277 VVVVTH--GDLLSLTDRARIRTYLGE 300 (350)
Q Consensus 277 VIiiTH--~~~~~~aDri~v~l~~G~ 300 (350)
||+||| ..+..+||+++ ++++|.
T Consensus 186 ii~itH~~~~~~~~~~~i~-~~~~~~ 210 (213)
T cd03279 186 VGVISHVEELKERIPQRLE-VIKTPG 210 (213)
T ss_pred EEEEECchHHHHhhCcEEE-EEecCC
Confidence 999999 56778899996 488874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-20 Score=171.29 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=45.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEE
Q 018829 243 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 293 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~ 293 (350)
.++.+..||||||||++||||| |||+++||+ ++|+|++|| ..+.++||+++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3678899999999999999986 999999873 778888888 67788999996
Q ss_pred EEec
Q 018829 294 IRTY 297 (350)
Q Consensus 294 v~l~ 297 (350)
+ |.
T Consensus 232 ~-l~ 234 (243)
T cd03272 232 G-VK 234 (243)
T ss_pred E-EE
Confidence 4 53
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=183.68 Aligned_cols=186 Identities=15% Similarity=0.072 Sum_probs=127.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
...|++++|++.-+.++. .. ++++||+|++|+.+.|.||||||||+|+|.|.|+++ -.+|.+..-.....
T Consensus 431 Dn~i~~e~v~l~tPt~g~-~l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGD-LL---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGP- 500 (659)
T ss_pred cceEEeeeeeecCCCCCc-ee---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCC-
Confidence 468999999999876332 23 566999999999999999999999999999999999 88999875432210
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+.+-|++|.+.--.+ +.++.+.++........+....+.+.+.|+.++|.+-+ .|+.
T Consensus 501 -----------~~lfflPQrPYmt~G-----------TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~-~r~g 557 (659)
T KOG0060|consen 501 -----------KDLFFLPQRPYMTLG-----------TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL-EREG 557 (659)
T ss_pred -----------CceEEecCCCCcccc-----------chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH-HHhC
Confidence 012355554433323 44445555433221112223456677778887776521 2222
Q ss_pred eee--eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec-hHHH
Q 018829 232 FVI--FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLL 286 (350)
Q Consensus 232 ~~~--~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH-~~~~ 286 (350)
+.+ .+ ..=...||+||+||+|+||.+ ||-||+++. |+|.|-|.| ..+.
T Consensus 558 gld~~~~-------~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 558 GLDQQVD-------WDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW 630 (659)
T ss_pred CCCchhh-------ccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH
Confidence 222 11 112235999999999999998 999999863 999999999 6888
Q ss_pred hcccEEEEEecC
Q 018829 287 SLTDRARIRTYL 298 (350)
Q Consensus 287 ~~aDri~v~l~~ 298 (350)
++-|.+ +.|+.
T Consensus 631 kfHd~~-L~~~g 641 (659)
T KOG0060|consen 631 KFHDYV-LRMDG 641 (659)
T ss_pred hhhhEE-EEecC
Confidence 889998 44654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-20 Score=187.04 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=127.8
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..|.+.++|++|.|.++..+ +++++|-|..++.+++|||||||||||+|+++|.+. |+.|.|.-.-...-
T Consensus 386 p~pvi~~~nv~F~y~~~~~i-----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~~~ 455 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMI-----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHNKL 455 (614)
T ss_pred CCCeEEEeccccCCCCcchh-----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccccc
Confidence 35689999999999765434 777999999999999999999999999999999999 99999875433221
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.++.|+ ..+.. .+..+..+++.-. .+.....+.++.++..+||..+.
T Consensus 456 -~~y~Qh---------------------~~e~l-dl~~s~le~~~~~------~~~~~~~e~~r~ilgrfgLtgd~---- 502 (614)
T KOG0927|consen 456 -PRYNQH---------------------LAEQL-DLDKSSLEFMMPK------FPDEKELEEMRSILGRFGLTGDA---- 502 (614)
T ss_pred -hhhhhh---------------------hHhhc-CcchhHHHHHHHh------ccccchHHHHHHHHHHhCCCccc----
Confidence 000000 00000 0111222333211 11123456788899999998643
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
...+..+||+|||.||++|+++ ||||++||= .-+||++|| ..+.
T Consensus 503 ------------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~ 570 (614)
T KOG0927|consen 503 ------------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLIS 570 (614)
T ss_pred ------------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHH
Confidence 3678899999999999999998 999999871 558999999 4777
Q ss_pred hcccEEEEEecCCeEee
Q 018829 287 SLTDRARIRTYLGELLG 303 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~ 303 (350)
++++++++ ..+|.+..
T Consensus 571 qVaeEi~~-c~~~~~~~ 586 (614)
T KOG0927|consen 571 QVAEEIWV-CENGTVTK 586 (614)
T ss_pred HHHHHhHh-hccCceee
Confidence 99999976 66665543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=192.11 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=77.7
Q ss_pred HHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC-------
Q 018829 213 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------- 273 (350)
Q Consensus 213 i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~------- 273 (350)
..++++.+||... .+++.+..|||||+||++||++| |||+++||.
T Consensus 810 ~l~~L~~vgL~~l----------------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~ 873 (943)
T PRK00349 810 KLQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL 873 (943)
T ss_pred HHHHHHHCCCCcc----------------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH
Confidence 4567888999752 24788999999999999999998 999999863
Q ss_pred ---------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 ---------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| -.....||+++ .| ++|++++.|++++++..+. ++|..++.
T Consensus 874 ~~L~~l~~~G~TVIiitH~~~~i~~aD~ii-~Lgp~~G~~~G~Iv~~Gt~~el~~~~~-s~t~~~l~ 938 (943)
T PRK00349 874 EVLHRLVDKGNTVVVIEHNLDVIKTADWII-DLGPEGGDGGGEIVATGTPEEVAKVEA-SYTGRYLK 938 (943)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCHHHHHhCcc-cHHHHHHH
Confidence 899999999 33446799995 59 7999999999999988766 56666664
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=181.48 Aligned_cols=204 Identities=14% Similarity=0.108 Sum_probs=130.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE--CCEeCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGD 150 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i--~G~~i~ 150 (350)
.-+.+.++++.|.+ +.. ++|+.|++.+|+.+||+|+|||||||+|++|+|-.. |..-.+.+ ..+.+.
T Consensus 74 ~dvk~~sls~s~~g---~~l---~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y~ls~e~~ 142 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VEL---IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFYLLSREIE 142 (614)
T ss_pred ccceeeeeeeccCC---cee---eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchhhhcccCC
Confidence 34899999999975 344 677999999999999999999999999999999888 64443322 111111
Q ss_pred CCccccccccCCCccceeec----cccccccchhhhhHhh-HHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 151 GTYFLQEYTIPRGSNSFSLY----DTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~----d~~~~~~~v~q~~~l~-~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
+.. .+.+..++. .......+ .+++... ...-.+....-.......+....+.++..+|..+|..+.
T Consensus 143 ----ps~----~~av~~v~~~~~~e~~rle~~-~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 143 ----PSE----KQAVQAVVMETDHERKRLEYL-AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred ----Cch----HHHHHHHhhhhHHHHHHHHHH-HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 000 000111110 00000000 0111000 000000000001111123345566677778888887764
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------Cc-eEEEEec
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DK-PVVVVTH 282 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~-TVIiiTH 282 (350)
...+....||||||.|+++|||| ||||++||. +. ++++++|
T Consensus 214 ----------------m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh 277 (614)
T KOG0927|consen 214 ----------------MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSH 277 (614)
T ss_pred ----------------HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEec
Confidence 46788899999999999999999 999999873 55 8999999
Q ss_pred --hHHHhcccEEEEEecCCe-EeecCCccccccC
Q 018829 283 --GDLLSLTDRARIRTYLGE-LLGIPPAKQIFDI 313 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~-iv~~g~~~~l~~~ 313 (350)
+.+-..|..|+ .|+.++ +...|+-++....
T Consensus 278 ~QDfln~vCT~Ii-~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 278 SQDFLNGVCTNII-HLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred chhhhhhHhhhhh-eecccceeeecCCHHHHhhH
Confidence 77889999995 699999 6667777665443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=174.76 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=152.2
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC-
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG- 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i- 149 (350)
..+.+++++|+..-..+ .++ +++|||+|++||++||.|=.|-|-+-|+.+|+|+.+ +.+|+|.++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~--~~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~ 323 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG--VTA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVL 323 (501)
T ss_pred CCeEEEEeeeEeecCCC--Cce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEecc
Confidence 45789999999875433 345 566999999999999999999999999999999998 8889999999997
Q ss_pred CCCccccccccCCCccceeeccccccc---cc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLS---DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
.. .......+..++|++.|..... .+ +.+|..+...... ++...+..+.....+.+.++++.+++...
T Consensus 324 ~~---~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~-----~~~~~g~l~~~~i~~~a~~li~~fdVr~~ 395 (501)
T COG3845 324 GR---LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK-----PFSRGGFLDRRAIRKFARELIEEFDVRAP 395 (501)
T ss_pred cc---CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc-----ccccccccCHHHHHHHHHHHHHHcCccCC
Confidence 21 1122233446788888864432 22 3444333211000 00111123456778888999999988632
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC----------------CCceEEEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVV 280 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld----------------~g~TVIii 280 (350)
- ...+...||||.+||+-+||-| .+||-+|| .|+.|++|
T Consensus 396 ~----------------~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 396 S----------------PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred C----------------CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1 2567789999999999999999 79999986 29999999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
+- +++..+||||+| |++|+++...++++
T Consensus 460 S~dLDEil~lsDrIaV-i~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAV-IYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeee-eeCCceeccccccc
Confidence 99 789999999974 99999999887754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=197.39 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=79.8
Q ss_pred HHHhhhhhhhhhhc--CCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--
Q 018829 189 WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 264 (350)
Q Consensus 189 ~v~~~v~~~~~~~~--~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-- 264 (350)
++.+++.++..... ........+++ ++++.+|+... .+++.+.+|||||+||++|||||
T Consensus 764 tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l----------------~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 764 NIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYL----------------PLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred CHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcch----------------hhcCccccCCHHHHHHHHHHHHHhh
Confidence 55555555433111 11234455556 57889999762 15889999999999999999998
Q ss_pred ----------chhhcCCCC----------------CceEEEEec--hHHHhcccEEEEEec------CCeEeecCCcccc
Q 018829 265 ----------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTY------LGELLGIPPAKQI 310 (350)
Q Consensus 265 ----------DEPts~Ld~----------------g~TVIiiTH--~~~~~~aDri~v~l~------~G~iv~~g~~~~l 310 (350)
||||++||. |.|||+||| +.+ +.||+++ +|. .|+++..|+++++
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi-~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVL-ELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEE-EEccCCCCCCCEEEEeCCHHHH
Confidence 999999863 899999999 455 8999995 595 7999999999998
Q ss_pred cc
Q 018829 311 FD 312 (350)
Q Consensus 311 ~~ 312 (350)
+.
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 75
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-20 Score=169.16 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=47.4
Q ss_pred hhccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEE
Q 018829 242 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 292 (350)
Q Consensus 242 ~~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri 292 (350)
..++++..||+|||||++||||+ |||+++||+ +.|+|++|| ..+.++||++
T Consensus 120 ~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v 199 (212)
T cd03274 120 KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRL 199 (212)
T ss_pred ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEE
Confidence 34778889999999999999855 999999874 679999999 7788999999
Q ss_pred EEEecC
Q 018829 293 RIRTYL 298 (350)
Q Consensus 293 ~v~l~~ 298 (350)
+ +|..
T Consensus 200 ~-~~~~ 204 (212)
T cd03274 200 V-GIYK 204 (212)
T ss_pred E-EEEe
Confidence 5 4754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-19 Score=164.65 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=95.6
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe--CCCCccccccccCCCccceee--ccccc--
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--GDGTYFLQEYTIPRGSNSFSL--YDTRS-- 174 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~--i~~~~~~~~~~~~~~~~~~~~--~d~~~-- 174 (350)
|+..++ +++|+||||||||||+.+|.+++. +..|.+...+.+ +...... ........+...+ ++...
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~r~~~~~~~i~~~~~~-~~~~~~~~v~~~f~~~~~~~~~ 90 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-----EKSSHLRSKNLKDLIYRARVG-KPDSNSAYVTAVYEDDDGEEKT 90 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-----CCcccccccchhhhcccCccc-cCCCceEEEEEEEEcCCCcEEE
Confidence 333444 999999999999999999999998 666766544321 1000000 0000000111222 11100
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecch-hhhh--------cc
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDG-LAVL--------KS 245 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~-~~~~--------~~ 245 (350)
+...+.+.. ..+ . ........+.+.++++.+|+..+. .+++|. -+. ..+. .+
T Consensus 91 ~~~~~~~~~----------~~~--~---ingk~~s~~~~~~~l~~~gi~~~~---~~~~i~-Qg~v~~i~~~~p~~~~~~ 151 (247)
T cd03275 91 FRRIITGGS----------SSY--R---INGKVVSLKEYNEELEKINILVKA---RNFLVF-QGDVESIASKNPPGKRFR 151 (247)
T ss_pred EEEEEECCc----------eEE--E---ECCEEecHHHHHHHHHHhCCCCCC---CeEEEE-CCchhhhhhccCcchhhh
Confidence 000000000 000 0 001122234556788888886421 112111 000 1122 23
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEE
Q 018829 246 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIR 295 (350)
Q Consensus 246 ~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~ 295 (350)
.+.+||+|||||++||||+ |||+++||. |.|||+||| ..+...||+++++
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV 231 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence 3489999999999999986 999999863 789999999 5666889999764
Q ss_pred ecCC
Q 018829 296 TYLG 299 (350)
Q Consensus 296 l~~G 299 (350)
.+++
T Consensus 232 ~~~~ 235 (247)
T cd03275 232 YRDQ 235 (247)
T ss_pred EecC
Confidence 4444
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=180.16 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~------ 273 (350)
+..++++.+||... .+++.+.+|||||+||++||++| |||+++||.
T Consensus 807 ~~l~~L~~~gL~~l----------------~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L 870 (924)
T TIGR00630 807 RKLQTLCDVGLGYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL 870 (924)
T ss_pred HHHHHHHHcCCCch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH
Confidence 34567888898752 24788999999999999999998 999999863
Q ss_pred ----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCcccc
Q 018829 274 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQI 310 (350)
Q Consensus 274 ----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l 310 (350)
|.|||+||| -.....||+++ +| ++|++++.|+++++
T Consensus 871 ~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii-~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 871 LEVLQRLVDQGNTVVVIEHNLDVIKTADYII-DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EecCCccCCCCEEEEeCCHHHh
Confidence 899999999 33446799995 59 79999999998765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-18 Score=154.88 Aligned_cols=145 Identities=16% Similarity=0.238 Sum_probs=91.9
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHH----hccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccc
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 174 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~----gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (350)
.++++.+| +++|+||||||||||+++|. |... |..|.+..+...+.. ...+..+++.+++...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~i~~-------~~~~~~v~~~f~~~~~ 82 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKLIRE-------GEVRAQVKLAFENANG 82 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHHHhC-------CCCcEEEEEEEEeCCC
Confidence 45667777 99999999999999999995 7666 777766522211110 1112234566665421
Q ss_pred cccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHH
Q 018829 175 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 253 (350)
Q Consensus 175 ~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 253 (350)
..+ +.... ++.+|+.+.. ++++.+ .+++.+..||+|
T Consensus 83 -~~~~v~r~~-----~~~~~~~~~~-----------~~~~~~--------------------------~~~~~~~~LS~G 119 (204)
T cd03240 83 -KKYTITRSL-----AILENVIFCH-----------QGESNW--------------------------PLLDMRGRCSGG 119 (204)
T ss_pred -CEEEEEEEh-----hHhhceeeec-----------hHHHHH--------------------------HHhcCccccCcc
Confidence 111 22211 4556665321 111222 235678899999
Q ss_pred HHHH------HHHHHHh---------chhhcCCCC------------------CceEEEEec-hHHHhcccEEEEEecCC
Q 018829 254 KQYN------QIVATTF---------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 254 qrQR------vaIArAL---------DEPts~Ld~------------------g~TVIiiTH-~~~~~~aDri~v~l~~G 299 (350)
|+|| ++||||+ |||+++||+ +.|||++|| ......||+++.+-++|
T Consensus 120 ~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 120 EKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 9996 6888888 999999862 569999999 44556799996533444
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=166.91 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=95.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccc-cccchh
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LSDDAS 180 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~v~ 180 (350)
+|..||+++++||||-|||||+++|+|.++ |++|. ..++.. +|.+|-... +.+.|.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~v--------------SyKPQyI~~~~~gtV~ 419 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLKV--------------SYKPQYISPDYDGTVE 419 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----CccceE--------------eecceeecCCCCCcHH
Confidence 456778999999999999999999999999 99998 333332 233332221 233344
Q ss_pred hhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHH
Q 018829 181 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 260 (350)
Q Consensus 181 q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaI 260 (350)
|-+...... . .... ..-.++++-+.|++ ++++...+|||||.||+||
T Consensus 420 ~~l~~~~~~---~----------~~~s---~~~~ei~~pl~l~~-----------------i~e~~v~~LSGGELQRvaI 466 (591)
T COG1245 420 DLLRSAIRS---A----------FGSS---YFKTEIVKPLNLED-----------------LLERPVDELSGGELQRVAI 466 (591)
T ss_pred HHHHHhhhh---h----------cccc---hhHHhhcCccchHH-----------------HHhcccccCCchhHHHHHH
Confidence 432211110 0 0001 11224566677777 6799999999999999999
Q ss_pred HHHh---------chhhcCCCC-----------------CceEEEEech--HHHhcccEEEE
Q 018829 261 ATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DLLSLTDRARI 294 (350)
Q Consensus 261 ArAL---------DEPts~Ld~-----------------g~TVIiiTH~--~~~~~aDri~v 294 (350)
|.|| |||.+-||- ++|.++|.|| .+-.++||+++
T Consensus 467 aa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 467 AAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred HHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEE
Confidence 9999 999999872 8999999995 45578999953
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=147.89 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
...|++.++.|.|+...++ +-|+|++++.|....+||.||||||||+|+|+|-.- ...|.|.+.|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 4579999999999866665 777999999999999999999999999999999766 566999999976321
Q ss_pred CccccccccC-CCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIP-RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
.. .+. .....|.--++........+-+.-...++ +...++.. . ... ++-+.+++.+.++-
T Consensus 81 ----Dt-~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~---g-~dp---~Rre~LI~iLDIdl------ 141 (291)
T KOG2355|consen 81 ----DT-SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVG---G-DDP---ERREKLIDILDIDL------ 141 (291)
T ss_pred ----cc-cccccCceeEecccccccccccccccccccccH-HHHHhhcc---C-CCh---hHhhhhhhheeccc------
Confidence 00 000 00011111111111111010000000011 11111111 1 011 33334455555543
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC-----------------CCceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld-----------------~g~TVIiiTH-- 282 (350)
.-+.+.+|-|||+||.|++-| ||-|.-|| .|.||+..||
T Consensus 142 -------------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 142 -------------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred -------------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 457789999999999999998 88887764 1999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCc
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
+-++..+.+++ .++.|+++..-+.
T Consensus 209 DGLe~Wpthl~-yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 209 DGLETWPTHLV-YIKSGKLVDNLKY 232 (291)
T ss_pred cchhhcchhEE-EecCCeeeecccc
Confidence 77888899995 5999999884433
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=165.62 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=130.8
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..|.+++.+|+|.|.++.+ .. +.+++++++.-..++++|+||+||||+++++.+-+. |.+|.+.+.+.-
T Consensus 359 ~~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r~-- 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPRL-- 427 (582)
T ss_pred CCCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecccc--
Confidence 4568999999999988773 33 666999999999999999999999999999999998 999988876521
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
++++..|-...+. .+... -+.+-.....+. .++.+++.+..+|++.++
T Consensus 428 -------------ri~~f~Qhhvd~l-------~~~v~----~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g~l---- 475 (582)
T KOG0062|consen 428 -------------RIKYFAQHHVDFL-------DKNVN----AVDFMEKSFPGK----TEEEIRRHLGSFGLSGEL---- 475 (582)
T ss_pred -------------eecchhHhhhhHH-------HHHhH----HHHHHHHhCCCC----CHHHHHHHHHhcCCCchh----
Confidence 2233333222111 01000 011111111121 456677889999999865
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
+......||||||=||++|... ||||..||- +-.||+||| .++.
T Consensus 476 ------------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 476 ------------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred ------------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 3444789999999999999986 999999873 557999999 5778
Q ss_pred hcccEEEEEecCCeEee
Q 018829 287 SLTDRARIRTYLGELLG 303 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~ 303 (350)
..|+.+|+ .++|++..
T Consensus 544 ~~c~E~Wv-ve~g~vt~ 559 (582)
T KOG0062|consen 544 SLCKELWV-VEDGKVTP 559 (582)
T ss_pred hcCceeEE-EcCCcEEe
Confidence 89999986 99999876
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-18 Score=184.23 Aligned_cols=180 Identities=10% Similarity=0.098 Sum_probs=130.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+||+=-++||..+||+|+|||||||||++|+|-...+ ..+|.|.++|.+.. ...+ ++..||+-|+....
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~------q~tF-~R~~GYvqQ~DiH~ 876 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKD------QETF-ARVSGYVEQQDIHS 876 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCc------hhhh-ccccceeecccccC
Confidence 55599999999999999999999999999999976644 56799999998865 1122 22345554432222
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhh--hcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 253 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~--~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 253 (350)
. ..+|.|-+.+.... ....+.++..+.++++++.++|++.. .. +......+||.+
T Consensus 877 ~----------~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------da------iVG~~G~GLs~e 933 (1391)
T KOG0065|consen 877 P----------ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DA------LVGLPGSGLSTE 933 (1391)
T ss_pred c----------ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hh------hccCCCCCCCHH
Confidence 2 22555555554322 22334455668899999999998521 00 234445679999
Q ss_pred HHHHHHHHHHh----------chhhcCCCC----------------CceEEEEec---hHHHhcccEEEEEec-CCeEee
Q 018829 254 KQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH---GDLLSLTDRARIRTY-LGELLG 303 (350)
Q Consensus 254 qrQRvaIArAL----------DEPts~Ld~----------------g~TVIiiTH---~~~~~~aDri~v~l~-~G~iv~ 303 (350)
||+|+.||--| ||||||||. |.|||..-| .++.+.-|++++ |+ .|+.+.
T Consensus 934 QRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-LkrGGqtVY 1012 (1391)
T KOG0065|consen 934 QRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LKRGGQTVY 1012 (1391)
T ss_pred HhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-HhcCCeEEE
Confidence 99999998776 999999973 999999999 467788999965 65 588998
Q ss_pred cCCccc
Q 018829 304 IPPAKQ 309 (350)
Q Consensus 304 ~g~~~~ 309 (350)
.|+..+
T Consensus 1013 ~G~lG~ 1018 (1391)
T KOG0065|consen 1013 FGPLGE 1018 (1391)
T ss_pred ecCccc
Confidence 887643
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-17 Score=162.00 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=114.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
-|.+.+++..|+.. .. |.+-++++..|-.+||+|+||+|||||+|+|+.---... |.+-++. |.++
T Consensus 80 Di~~~~fdLa~G~k---~L---L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f--~veqE~~--g~~t---- 145 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK---IL---LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGF--HVEQEVR--GDDT---- 145 (582)
T ss_pred ceeeeeeeeeecch---hh---hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCcc--Cchhhee--ccch----
Confidence 37788999999852 23 666999999999999999999999999999987111000 2211111 1010
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
... +.......++.+.+........ ....++....+|.-+|..++.
T Consensus 146 ---------------~~~---------~~~l~~D~~~~dfl~~e~~l~~---~~~l~ei~~~~L~glGFt~em------- 191 (582)
T KOG0062|consen 146 ---------------EAL---------QSVLESDTERLDFLAEEKELLA---GLTLEEIYDKILAGLGFTPEM------- 191 (582)
T ss_pred ---------------HHH---------hhhhhccHHHHHHHHhhhhhhc---cchHHHHHHHHHHhCCCCHHH-------
Confidence 000 0000000011111111101000 002223333388899998853
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHhcc
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLT 289 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~~a 289 (350)
..++..+||||-|.|+++|||| ||||..||- +.|+|+||| .++-..|
T Consensus 192 ---------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 192 ---------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred ---------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 5778899999999999999999 999999872 789999999 4677788
Q ss_pred cEEEEEecCCeEe-ecCCccccccC
Q 018829 290 DRARIRTYLGELL-GIPPAKQIFDI 313 (350)
Q Consensus 290 Dri~v~l~~G~iv-~~g~~~~l~~~ 313 (350)
.-|+ .+++-++- ..|+-+++...
T Consensus 263 tdII-H~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 263 TDII-HLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHH-HHhhhhhhhhcCcHHHHHHh
Confidence 8883 47665553 34666555443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=143.01 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=87.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
++++++++.+| +.+|+||||||||||+.+|.-.+. .... ....|..+. ...+ .......+.+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~-~~~r~~~~~--~~i~-~~~~~~~i~~~------- 74 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKAS-DTNRGSSLK--DLIK-DGESSAKITVT------- 74 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcc-cccccccHH--HHhh-CCCCeEEEEEE-------
Confidence 45588888888 889999999999999999986554 2111 001111110 0000 00000011222
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 255 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 255 (350)
+++..+.. | ......++++.++++. .+ ..++++.+||+|||
T Consensus 75 ----~~~~~~~~-----~----------~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~lS~G~k 115 (198)
T cd03276 75 ----LKNQGLDA-----N----------PLCVLSQDMARSFLTS---NK-----------------AAVRDVKTLSGGER 115 (198)
T ss_pred ----EEcCCccC-----C----------cCCHHHHHHHHHHhcc---cc-----------------ccCCcccccChhHH
Confidence 22211111 0 0011223556666666 33 34788999999999
Q ss_pred HHHHHHHHh-------------chhhcCCCC-------------------CceEEEEec--hHHHhcccEEEEEecCCe
Q 018829 256 YNQIVATTF-------------NCPYLSFRD-------------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 300 (350)
Q Consensus 256 QRvaIArAL-------------DEPts~Ld~-------------------g~TVIiiTH--~~~~~~aDri~v~l~~G~ 300 (350)
||++||+|+ |||+++||. +.|||++|| +.+..+ |+|.+ |..++
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~-~~~~~ 192 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV-FRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE-EEecC
Confidence 999999876 999999763 248999999 456554 99964 87653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=159.95 Aligned_cols=174 Identities=13% Similarity=0.053 Sum_probs=105.0
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|.++|+-.--+.+.. + ...++|+|++|-.+.|+||||||||+|.|+|.|+++ ...|...+--
T Consensus 482 I~lenIpvItP~~~v--v---v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P~-------- 543 (728)
T KOG0064|consen 482 IILENIPVITPAGDV--L---VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIPR-------- 543 (728)
T ss_pred eEEecCceeccCcce--e---ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecCC--------
Confidence 667777776665543 3 455999999999999999999999999999999998 6555544311
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
...+-|.+|.+....+...+.+- +|.++.+--. +...++.....|+.+.|+.-+ +|-.+..
T Consensus 544 -------~~~mFYIPQRPYms~gtlRDQII-YPdS~e~~~~----------kg~~d~dL~~iL~~v~L~~i~-qr~~g~d 604 (728)
T KOG0064|consen 544 -------PNNIFYIPQRPYMSGGTLRDQII-YPDSSEQMKR----------KGYTDQDLEAILDIVHLEHIL-QREGGWD 604 (728)
T ss_pred -------CcceEeccCCCccCcCcccceee-cCCcHHHHHh----------cCCCHHHHHHHHHHhhHHHHH-HhccChh
Confidence 11234555554333333332221 1222111110 111123344455555555411 0001111
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC-------------CCceEEEEec-hHHHhcccE
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-------------DDKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld-------------~g~TVIiiTH-~~~~~~aDr 291 (350)
-|- .--..||||+|||+++||.+ ||-|++.. .|.+.|-||| -.+.++-..
T Consensus 605 a~~-------dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 605 AVR-------DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred hhc-------cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHH
Confidence 111 11235999999999999998 99999953 2999999999 455555555
Q ss_pred E
Q 018829 292 A 292 (350)
Q Consensus 292 i 292 (350)
+
T Consensus 678 l 678 (728)
T KOG0064|consen 678 L 678 (728)
T ss_pred H
Confidence 5
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-16 Score=142.21 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=51.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHh--------chhhcCCCC-----------------CceEEEEec-hHHHhcccEEEEEec
Q 018829 244 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTY 297 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIArAL--------DEPts~Ld~-----------------g~TVIiiTH-~~~~~~aDri~v~l~ 297 (350)
......+|+||+|+..|++++ |||++++|. +.|+|++|| ..+..+||++. .|+
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~-~l~ 164 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE-GVE 164 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC-CeE
Confidence 445668999999999999987 999999763 789999999 56778999995 599
Q ss_pred CCeEeecC
Q 018829 298 LGELLGIP 305 (350)
Q Consensus 298 ~G~iv~~g 305 (350)
+|++...+
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=148.30 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=108.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCC---CCCCCcccEEEECCEeCCCCccccccccCCCccceeeccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN---DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 172 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~---~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~ 172 (350)
|+|+||+|++|++++|+|+||||||||+++|+|.... ..+.|++|.|.+--..+. .+.+.+.. +
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-a~iPge~E---------p--- 465 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-ALIPGEYE---------P--- 465 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-hccCcccc---------c---
Confidence 5669999999999999999999999999999996542 234589998886432221 00011100 0
Q ss_pred cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCH
Q 018829 173 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 252 (350)
Q Consensus 173 ~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 252 (350)
.+...++.+++. . ...+-..+.++|..+|+.+.. +..+.+++||-
T Consensus 466 -----------~f~~~tilehl~-------s--~tGD~~~AveILnraGlsDAv---------------lyRr~f~ELSt 510 (593)
T COG2401 466 -----------EFGEVTILEHLR-------S--KTGDLNAAVEILNRAGLSDAV---------------LYRRKFSELST 510 (593)
T ss_pred -----------ccCchhHHHHHh-------h--ccCchhHHHHHHHhhccchhh---------------hhhccHhhcCc
Confidence 011112222222 0 112234567789999998855 56788899999
Q ss_pred HHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHHhc-ccEEEEEecCCeE
Q 018829 253 EKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL-TDRARIRTYLGEL 301 (350)
Q Consensus 253 GqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~-aDri~v~l~~G~i 301 (350)
||+.|..||+++ ||-.+.||+ +.|++++|| +....+ -|.+++ ..-|+.
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~-vgYg~v 587 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL-VGYGKV 587 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE-eecccc
Confidence 999999999999 777777774 999999999 444455 688854 555554
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=165.46 Aligned_cols=206 Identities=13% Similarity=0.149 Sum_probs=148.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+|+|.-+++|+.+.++||.|||||||+++|+|-..+.. -..|+|.+||.+.. +... ++...|+.|.-..+
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~------e~~~-~~~~aY~~e~DvH~ 201 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLK------EFVP-KKTVAYNSEQDVHF 201 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCccc------cccc-CceEEecccccccc
Confidence 666999999999999999999999999999999887554 34579999998875 2111 33556777766666
Q ss_pred ccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHH-HHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHH
Q 018829 176 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 253 (350)
Q Consensus 176 ~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~-~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 253 (350)
..+ |+|-+.+.... ++... +.. ...+.+ ..+..+.+++.+||+. |.+.+|+ +......|||
T Consensus 202 p~lTVreTldFa~rc--k~~~~--r~~-~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VG-----nd~~RGvSGG 264 (1391)
T KOG0065|consen 202 PELTVRETLDFAARC--KGPGS--RYD-EVSRREKLAAMTDYLLKILGLDH-------CADTLVG-----NDMVRGVSGG 264 (1391)
T ss_pred ceeEEeehhhHHHhc--cCCcc--ccc-cccHHHHHHHHHHHHHHHhCchh-------hccceec-----ccccccccCc
Confidence 655 77766654331 01100 000 111222 1225667899999986 3344443 4567789999
Q ss_pred HHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec---hHHHhcccEEEEEecCCeEeec
Q 018829 254 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYLGELLGI 304 (350)
Q Consensus 254 qrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH---~~~~~~aDri~v~l~~G~iv~~ 304 (350)
||.|+++|-++ ||+|.|||- +.|+++.-| .++..+-|.|++ |.+|+++..
T Consensus 265 erKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l-L~eG~~iy~ 343 (1391)
T KOG0065|consen 265 ERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL-LSEGYQIYQ 343 (1391)
T ss_pred ccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee-eeccceEEe
Confidence 99999999998 999999983 888888888 578889999964 999999999
Q ss_pred CCccccc--------cCCCCCChHHHHHHHHH
Q 018829 305 PPAKQIF--------DIPESSDPENELIIVDM 328 (350)
Q Consensus 305 g~~~~l~--------~~~~~~~~~~~~~~~~~ 328 (350)
|+.++++ ..|....++.++..+..
T Consensus 344 Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts 375 (1391)
T KOG0065|consen 344 GPRDEVLPYFEDMGFKCPPRKGTADFLTEVTS 375 (1391)
T ss_pred ccHHHHHHHHHhcCccCCCccCHHHHHHHhhc
Confidence 9998763 34666677777765543
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=151.14 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=79.0
Q ss_pred HHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCC--------
Q 018829 213 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR-------- 272 (350)
Q Consensus 213 i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld-------- 272 (350)
..+.|..+||.= + .+.+....|||||.||+-+|.-| ||||.+|.
T Consensus 802 kLqtL~dVGLgY-i---------------~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl 865 (935)
T COG0178 802 KLQTLVDVGLGY-I---------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL 865 (935)
T ss_pred HHHHHHHcCcce-E---------------ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH
Confidence 345577788863 2 35888999999999999999999 99999963
Q ss_pred --------CCceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 273 --------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 273 --------~g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
.|.|||+|.| -++.+.||.| +-| ..|+|++.|+|+++...+ .++|..++..
T Consensus 866 ~VL~rLvd~GnTViVIEHNLdVIk~AD~I-IDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk~ 931 (935)
T COG0178 866 EVLHRLVDKGNTVIVIEHNLDVIKTADWI-IDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLKK 931 (935)
T ss_pred HHHHHHHhCCCEEEEEecccceEeecCEE-EEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHHH
Confidence 4999999999 4788899999 454 568999999999999876 7888887764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-15 Score=149.99 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=104.1
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..|++-+.+|+|.|++..+. +++++|-|.-...+|||||||.|||||+++|.|-+. |+.|+..-+-. +.
T Consensus 583 ~PPvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnhr-L~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNHR-LR 651 (807)
T ss_pred CCCeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccce-ee
Confidence 45788999999999765543 677999999999999999999999999999999999 99998765431 11
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
+++--|... ..+ ..+.+.-+... ..+.+ .+.++..|-.+||....
T Consensus 652 --------------iG~FdQh~~--E~L~~Eetp~EyLqr-----------~FNlp----yq~ARK~LG~fGL~sHA--- 697 (807)
T KOG0066|consen 652 --------------IGWFDQHAN--EALNGEETPVEYLQR-----------KFNLP----YQEARKQLGTFGLASHA--- 697 (807)
T ss_pred --------------eechhhhhH--HhhccccCHHHHHHH-----------hcCCC----hHHHHHHhhhhhhhhcc---
Confidence 122111110 000 01111111100 00111 23455668888887521
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH 282 (350)
-.-....|||||+-||++|-.- ||||.+||- +-.||||||
T Consensus 698 -------------HTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsH 759 (807)
T KOG0066|consen 698 -------------HTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSH 759 (807)
T ss_pred -------------ceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEec
Confidence 1234568999999999999753 999999871 567999999
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-15 Score=147.54 Aligned_cols=174 Identities=16% Similarity=0.153 Sum_probs=110.3
Q ss_pred EEEEEECCCceEEecCCCeeEeEE-EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccc
Q 018829 79 NKILSYTPGAWIENVGGMTLSDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 157 (350)
Q Consensus 79 ~l~~~y~~~~~~~~l~~L~~is~~-I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 157 (350)
++..+|+.+... | -.+= .++|.++||+||||-||||.+|+|+|.+. |.=|+-. +.+- +
T Consensus 79 e~vHRYg~NgFk-----L--~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~~--~pp~-------w 137 (591)
T COG1245 79 EVVHRYGVNGFK-----L--YRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRYE--DPPS-------W 137 (591)
T ss_pred cceeeccCCceE-----E--ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCCC--CCCC-------H
Confidence 567889765432 2 2333 35799999999999999999999999999 8766432 1110 0
Q ss_pred cccCCCccceeecccc-------ccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 158 YTIPRGSNSFSLYDTR-------SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 158 ~~~~~~~~~~~~~d~~-------~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
..+-++.-+-.+|+.. ...-.-.|...+.+..+.+.+..-++ +....-...++.+.++|..
T Consensus 138 deVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk------~~de~g~~devve~l~L~n------ 205 (591)
T COG1245 138 DEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLK------KVDERGKFDEVVERLGLEN------ 205 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHH------hhhhcCcHHHHHHHhcchh------
Confidence 0000000011111110 00111245555555544333332111 1112234667888899988
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC----------------CCceEEEEechHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTHGDL 285 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld----------------~g~TVIiiTH~~~ 285 (350)
++++...+||||+.||+|||.|+ |||+|-|| ++++||+|.||.+
T Consensus 206 -----------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 206 -----------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred -----------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 67999999999999999999999 99999975 2799999999643
Q ss_pred --HhcccEEEEEec
Q 018829 286 --LSLTDRARIRTY 297 (350)
Q Consensus 286 --~~~aDri~v~l~ 297 (350)
-.++|-|.+ ++
T Consensus 275 vLD~lsD~vhI-~Y 287 (591)
T COG1245 275 VLDYLSDFVHI-LY 287 (591)
T ss_pred HHHHhhheeEE-Ee
Confidence 367898853 44
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=155.07 Aligned_cols=95 Identities=17% Similarity=0.058 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCC-------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR------- 272 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld------- 272 (350)
+..+.|..+||.-- .+.+....|||||.||+-||..| ||||.+|+
T Consensus 1678 ~~L~~L~~vGLgYl----------------~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L 1741 (1809)
T PRK00635 1678 KPLQALIDNGLGYL----------------PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL 1741 (1809)
T ss_pred HHHHHHHHcCCCee----------------eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH
Confidence 34567888898742 35889999999999999999998 99999975
Q ss_pred ---------CCceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 273 ---------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 273 ---------~g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
.|.|||+|.| -++.+.||.| +-| +.|+|++.|+|+++...+ .++|..++.
T Consensus 1742 l~~l~~L~~~g~tvivieH~~~~i~~aD~i-idlgp~gG~~GG~iva~Gtp~~i~~~~-~S~t~~~l~ 1807 (1809)
T PRK00635 1742 LVQLRTLVSLGHSVIYIDHDPALLKQADYL-IEMGPGSGKTGGKILFSGPPKDISASK-DSLLKTYMC 1807 (1809)
T ss_pred HHHHHHHHhcCCeEEEEeCCHHHHHhCCEE-EEcCCCcccCCCEEEEEeCHHHHhhCC-CCcHHHHhc
Confidence 2999999999 4677779999 455 458999999999998764 456666553
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-14 Score=128.76 Aligned_cols=57 Identities=7% Similarity=-0.049 Sum_probs=43.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC-----------------C-ceEEEEec--hHHHhcc
Q 018829 243 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD-----------------D-KPVVVVTH--GDLLSLT 289 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~-----------------g-~TVIiiTH--~~~~~~a 289 (350)
.+..+.+||+|||||+.+|++| |||+++||+ + .|+|++|| ......|
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 3667889999999999887552 999999863 3 47999999 3555666
Q ss_pred c--EEEEEecCCe
Q 018829 290 D--RARIRTYLGE 300 (350)
Q Consensus 290 D--ri~v~l~~G~ 300 (350)
| +++ ++++|+
T Consensus 200 ~~~~v~-~l~~g~ 211 (213)
T cd03277 200 EKMTVL-CVYNGP 211 (213)
T ss_pred CceEEE-EEecCc
Confidence 6 564 488776
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-14 Score=137.46 Aligned_cols=195 Identities=14% Similarity=0.065 Sum_probs=120.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
-|.++|.+.+-.+.. . +.+-|+.|-.|..++||||||-|||||++.|+---- . .|..=.|++..+.+....
T Consensus 264 DIKiEnF~ISA~Gk~---L---FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral-a--IPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL---L---FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL-A--IPPNIDVLLCEQEVVADS 334 (807)
T ss_pred cceeeeeeeecccce---e---eeccceEEEecceecccCCCCCchHHHHHHHHhhhc-c--CCCCCceEeeeeeeeecC
Confidence 378899988875422 2 566999999999999999999999999999975221 0 144445566555442100
Q ss_pred cccccccCCCccceeec-cccccccchhhhhHhhH------HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcc
Q 018829 154 FLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIK------LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 226 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~-d~~~~~~~v~q~~~l~~------~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 226 (350)
.. . +.-++. |... ..+..+...+.. .++.+.+..-....+.......+.+++.+|.-+|++.+.
T Consensus 335 t~---A-----i~tvl~aD~kR-l~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 335 TS---A-----IDTVLKADKKR-LALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred cH---H-----HHHHHHhhHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH
Confidence 00 0 000110 1110 011111111111 111111111111111122234566778888888988753
Q ss_pred ccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--
Q 018829 227 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-- 282 (350)
Q Consensus 227 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH-- 282 (350)
-+++...+|||-|.||++|||| ||||..||- .+|++||+|
T Consensus 406 ----------------Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 406 ----------------QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred ----------------hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 4667788999999999999998 999999762 799999999
Q ss_pred hHHHhcccEEEEEecCCeEee
Q 018829 283 GDLLSLTDRARIRTYLGELLG 303 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~ 303 (350)
.++-..|..|+ .+++-++-.
T Consensus 470 gFLD~VCtdII-HLD~qkLhy 489 (807)
T KOG0066|consen 470 GFLDSVCTDII-HLDNQKLHY 489 (807)
T ss_pred chHHHHHHHHh-hhhhhhhhh
Confidence 47778898884 588776643
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-13 Score=128.08 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEe
Q 018829 246 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT 296 (350)
Q Consensus 246 ~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l 296 (350)
....|||||+||+++|+++ |||+++||. +.|+|++|| ..+..+||++++ +
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~-l 245 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL-V 245 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE-E
Confidence 3345999999999999742 999999863 789999999 446689999965 7
Q ss_pred cCCeE
Q 018829 297 YLGEL 301 (350)
Q Consensus 297 ~~G~i 301 (350)
.++..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 66543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=117.52 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHh-------------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEEec
Q 018829 250 SDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 297 (350)
Q Consensus 250 LSGGqrQRvaIArAL-------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~ 297 (350)
||+||+||++|||++ |||+++||. +.|+|++|| ......+|+++. +.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~-i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG-VL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE-EE
Confidence 999999999999975 999999873 589999999 445568999965 44
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-13 Score=124.85 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHHh-----------chh---hcCCCC---------------CceEEEEec-hHHHhcccEEEEEe
Q 018829 247 EGDSDVEKQYNQIVATTF-----------NCP---YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT 296 (350)
Q Consensus 247 ~~~LSGGqrQRvaIArAL-----------DEP---ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l 296 (350)
...+|.|++|+..+|+++ ||| |+++|. +.++|++|| ..+..+||++. .+
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~-~i 165 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVP-NV 165 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCC-Ce
Confidence 457888888888888887 999 666542 789999999 67888999995 58
Q ss_pred cCCeEeecCC
Q 018829 297 YLGELLGIPP 306 (350)
Q Consensus 297 ~~G~iv~~g~ 306 (350)
++|++...+.
T Consensus 166 ~~g~~~~~~~ 175 (222)
T cd03285 166 KNLHVTALTD 175 (222)
T ss_pred EEEEEEEEEe
Confidence 9999877654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-13 Score=120.12 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=28.2
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.|+++.+|++++|+||||||||||+++|++.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 5778889999999999999999999999953
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=112.28 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHh-------------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEEecC
Q 018829 249 DSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYL 298 (350)
Q Consensus 249 ~LSGGqrQRvaIArAL-------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~ 298 (350)
+||+||+||+++|++| |||++++|. +.++|++|| ......+|+++ .|+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~-~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI-HIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEE-EEEE
Confidence 4999999999999988 999999763 579999999 45556799995 4653
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-12 Score=123.36 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=93.6
Q ss_pred CeeEeEEEeCCc-----EEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECCEeCCCCccccccccCCCccceee
Q 018829 96 MTLSDYDVPKTT-----SLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSL 169 (350)
Q Consensus 96 L~~is~~I~~Ge-----~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i~~~~~~~~~~~~~~~~~~~~ 169 (350)
+-+..|.|..|+ ++..+|+||.|||||+++++|.++ |++| +|-... ++|-+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~ln------------------VSykp 408 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPVLN------------------VSYKP 408 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccccc------------------eeccc
Confidence 344888888884 789999999999999999999999 8876 332222 12223
Q ss_pred ccccc-cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCC
Q 018829 170 YDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 248 (350)
Q Consensus 170 ~d~~~-~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~ 248 (350)
|.... +.+.|.|-+. ..+++.. ...+-+.+.++-+.++. ..++-..
T Consensus 409 qkispK~~~tvR~ll~---~kIr~ay-------------~~pqF~~dvmkpL~ie~-----------------i~dqevq 455 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH---TKIRDAY-------------MHPQFVNDVMKPLQIEN-----------------IIDQEVQ 455 (592)
T ss_pred cccCccccchHHHHHH---HHhHhhh-------------cCHHHHHhhhhhhhHHH-----------------HHhHHhh
Confidence 32221 1122322111 1111100 01122334455555555 4577788
Q ss_pred CCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEechH--HHhcccEEEE
Q 018829 249 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHGD--LLSLTDRARI 294 (350)
Q Consensus 249 ~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH~~--~~~~aDri~v 294 (350)
.||||++||+|+|.+| |||.+-||. ++|-.+|.|+. +..+|||+++
T Consensus 456 ~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrviv 529 (592)
T KOG0063|consen 456 GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 529 (592)
T ss_pred cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence 9999999999999999 999998762 89999999964 4478999943
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-12 Score=105.15 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=40.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
|++++|++++|++++|+||||||||||++++. +|.+.++|.++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~ 48 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV 48 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH
Confidence 56699999999999999999999999999975 488999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-11 Score=114.00 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.5
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 45578888877 789999999999999999977664
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=132.34 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC-----
Q 018829 210 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----- 273 (350)
Q Consensus 210 ~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~----- 273 (350)
.+++ ++|+.+||... .+++.+.+|||||+||++||+|| ||||++||+
T Consensus 467 ~~rl-~~L~~vGL~~l----------------~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~ 529 (943)
T PRK00349 467 RERL-KFLVDVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDR 529 (943)
T ss_pred HHHH-HHhhccccCCC----------------CCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHH
Confidence 3444 36777888751 15889999999999999999998 999999874
Q ss_pred -----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCC
Q 018829 274 -----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 274 -----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~ 314 (350)
|.|||+|+| -.....||+|+ +| ++|+++..|+++++...+
T Consensus 530 L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi-~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 530 LIETLKHLRDLGNTLIVVEHDEDTIRAADYIV-DIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EeccccCCCCCEEeeccCHHHHhcCh
Confidence 899999999 23335699995 59 999999999999886653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-11 Score=131.11 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=61.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEE
Q 018829 243 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 294 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v 294 (350)
+++.+.+|||||+||++||+|| ||||++||+ |.|||+|+| ......||+++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi- 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI- 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE-
Confidence 4889999999999999999998 999999874 899999999 34445899996
Q ss_pred Ee------cCCeEeecCCccccccCC
Q 018829 295 RT------YLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 295 ~l------~~G~iv~~g~~~~l~~~~ 314 (350)
+| ++|+|++.|+++++...+
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~~ 585 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILANP 585 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcCc
Confidence 59 899999999998886543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=110.36 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=37.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+||||||||||+++|+|++. |++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEee
Confidence 5789999999999999999999999 99999999999875
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-11 Score=107.03 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=33.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|++|++++|++++|+||||||||||+++|+++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999999999999999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=103.73 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.5
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++++|+. |++++|+||||||||||+|+|+|...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 44466655 79999999999999999999998663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=98.36 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEE
Q 018829 249 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 294 (350)
Q Consensus 249 ~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v 294 (350)
.||||||-+++||--| ||+.++||+ +.-+|++|| ......||+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~ 210 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIG 210 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999766 999999874 588999999 677788898854
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-10 Score=114.00 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i~ 150 (350)
|++|||+|++||+++|+||||||||||++ +|+.. |++| +|.++|+++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 55599999999999999999999999999 77777 7788 7999999986
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=103.13 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=29.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+.+|+.++|+||+|+|||||++.|+....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5788999999999999999999999999887
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-09 Score=106.31 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++ |.+.+|++++|+|+||+|||||+++|+++.. |+.|.|.+.|+..
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Gerg 196 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGERG 196 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecCC
Confidence 5559 9999999999999999999999999999999 9999999876543
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-09 Score=99.54 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++++|++.+ ++++|+||||||||||+|+|+++.-
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH
Confidence 5669999887 8999999999999999999987553
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-10 Score=100.76 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 018829 109 LLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~ 127 (350)
++|+||||+|||||+|.|.
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6799999999999999998
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-09 Score=116.44 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=30.0
Q ss_pred EeEEEeCC-cEEEEEcCCCChHHHHHHHHHhc-cC
Q 018829 99 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV-FE 131 (350)
Q Consensus 99 is~~I~~G-e~iaIvGpnGsGKSTLl~~I~gl-~~ 131 (350)
+|+++..+ ++++|+||||+|||||+|.|++. +.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~ 348 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM 348 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH
Confidence 68888877 89999999999999999999998 44
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-08 Score=101.72 Aligned_cols=158 Identities=16% Similarity=0.071 Sum_probs=93.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE--CCEeCC---CCccccccccCCCccceeeccccccccc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGD---GTYFLQEYTIPRGSNSFSLYDTRSLSDD 178 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i--~G~~i~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 178 (350)
++|+++++||.||-||||-+++++|-.+ |.-|.-.. +++.+- .++..|.+. .-++.+.. ..-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il~~frgselq~yf------tk~le~~l-k~~~ 165 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEILTYFRGSELQNYF------TKILEDNL-KAII 165 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHhhhhhhHHHhhhh------hhhccccc-cCcC
Confidence 4799999999999999999999999999 76654321 011110 000011100 00011100 0001
Q ss_pred hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHH
Q 018829 179 ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 258 (350)
Q Consensus 179 v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRv 258 (350)
-+|.+.-++..+..++.--+. +...++...++.+.+.|.. ++++-..+||||+.||.
T Consensus 166 kpQyvd~ipr~~k~~v~~~l~------~~~~r~~~~~~~~~~~L~~-----------------~~~re~~~lsggelqrf 222 (592)
T KOG0063|consen 166 KPQYVDQIPRAVKGTVGSLLD------RKDERDNKEEVCDQLDLNN-----------------LLDREVEQLSGGELQRF 222 (592)
T ss_pred ChHHHHHHHHHHHHHHHHHHH------HHhhcccHHHHHHHHHHhh-----------------HHHhhhhhcccchhhhh
Confidence 244444334333332221111 1122223445566677776 56888899999999999
Q ss_pred HHHHHh---------chhhcCCC----------------CCceEEEEech--HHHhcccEEEEEec
Q 018829 259 IVATTF---------NCPYLSFR----------------DDKPVVVVTHG--DLLSLTDRARIRTY 297 (350)
Q Consensus 259 aIArAL---------DEPts~Ld----------------~g~TVIiiTH~--~~~~~aDri~v~l~ 297 (350)
+||.+- |||.+.|| ++.=||+|.|+ .+-.++|-+.+ +.
T Consensus 223 aia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc-LY 287 (592)
T KOG0063|consen 223 AIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC-LY 287 (592)
T ss_pred hhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE-Ee
Confidence 999997 99999865 27789999993 34467788754 54
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=100.17 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=53.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
.++-+.++..|..+ +.+ ++.+ |.+.+|+.++|+|+||+|||||+++|++..+ ++.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TG--ira---ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETG--IKS---IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCC--CEE---Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCC
Confidence 46677788777644 345 4445 9999999999999999999999999999999 999988887755
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=92.39 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++++++.+| +.+|+||||||||||+.+|..+..
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 66699999888 899999999999999999997654
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-08 Score=102.77 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=68.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEE
Q 018829 243 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 294 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v 294 (350)
+++....|||||.||+.||.-+ |||..+|.+ |.|+|+|.| .++.+.||+| |
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~i-I 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHI-I 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEE-E
Confidence 4888999999999999999998 999999853 999999999 6788899999 5
Q ss_pred E------ecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 295 R------TYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 295 ~------l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
- .+.|+|++.|++++++.+++ +.|..++.
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~~-SlTG~YLs 588 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANPE-SLTGQYLS 588 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCCc-chhhHhhc
Confidence 4 46799999999999999875 34455544
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=87.78 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=39.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh-ccCCCCCCCcccEEEEC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYN 145 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g-l~~~~~~~p~~G~I~i~ 145 (350)
.++++|++.+|++++|+||||+|||||+++|++ .+. +..|.....
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~a 66 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVPA 66 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEEc
Confidence 667999999999999999999999999999999 555 777765543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-08 Score=100.05 Aligned_cols=65 Identities=9% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
.+.++.++++..|..+ +.+++ .++ .|.+|++++|+||||||||||+++|+++.. |+.|.|.+.|+
T Consensus 137 p~~~~r~~v~~~l~TG--i~aID---~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLRTG--VRVID---IFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcCCC--cEEee---eec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeeccc
Confidence 4568999999999755 45644 475 999999999999999999999999999999 99999988653
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-08 Score=95.19 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHHHHHccchhccc---CCCCcEEEEEEEEEECCCceEEecCCCe-----------eEeEEEeCCcEEEEEcCCCC
Q 018829 52 RRDAVFREVLQSYDQLRT---RIGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKGS 117 (350)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~---~~~~~l~i~~l~~~y~~~~~~~~l~~L~-----------~is~~I~~Ge~iaIvGpnGs 117 (350)
+...|+.++++..+.... .....+.|+||++.|++...+ |+ |+++.|.+|+.++|+||+||
T Consensus 105 ~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~-----Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~ 179 (415)
T TIGR00767 105 KEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLR-----LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKA 179 (415)
T ss_pred ccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccce-----eecCccccceeeeeeEEEeCCCCEEEEECCCCC
Confidence 345688899887654322 123469999999999765433 64 79999999999999999999
Q ss_pred hHHHHHHHHHhccC
Q 018829 118 GKSSLVNRISKVFE 131 (350)
Q Consensus 118 GKSTLl~~I~gl~~ 131 (350)
|||||++.|+..+.
T Consensus 180 GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 180 GKTVLLQKIAQAIT 193 (415)
T ss_pred ChhHHHHHHHHhhc
Confidence 99999999999886
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-07 Score=102.84 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=38.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHh--------chhhcCCCC-----------------CceEEEEec--hHHHhcccEE
Q 018829 244 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRA 292 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIArAL--------DEPts~Ld~-----------------g~TVIiiTH--~~~~~~aDri 292 (350)
.+..+.+|+||+|++.|++++ |||++++|+ +.++|++|| +.+...+++.
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~ 460 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNRE 460 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCC
Confidence 456678999999999999986 999999763 789999999 3444445555
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-08 Score=87.25 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=40.5
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+.+.+++|+.++|+||||||||||+++|+++++ |+.|.|.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~ 61 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDT 61 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCc
Confidence 667789999999999999999999999999999 99999998763
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-07 Score=83.51 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=24.1
Q ss_pred eEEEeCC--cEEEEEcCCCChHHHHHHHHHh
Q 018829 100 DYDVPKT--TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 100 s~~I~~G--e~iaIvGpnGsGKSTLl~~I~g 128 (350)
++.+.++ .+++|+||||+|||||+|.|..
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 4445554 7899999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.5e-08 Score=85.60 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=25.6
Q ss_pred CCceEEEEec-hHHHhcccEEEEEecCCeEeec
Q 018829 273 DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 304 (350)
Q Consensus 273 ~g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~ 304 (350)
.+.++|+++| ..+...+|+|. .+.+|+|++.
T Consensus 125 ~~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~ 156 (174)
T PRK13695 125 SEKPVIATLHRRSVHPFVQEIK-SRPGGRVYEL 156 (174)
T ss_pred CCCeEEEEECchhhHHHHHHHh-ccCCcEEEEE
Confidence 3668999999 66667899995 5999999776
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=88.70 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=43.0
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+.+ ++.+ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|..
T Consensus 151 i~~---iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r 200 (440)
T TIGR01026 151 VRS---IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGER 200 (440)
T ss_pred eee---eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeec
Confidence 456 4448 9999999999999999999999999999998 888877766654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.8e-07 Score=90.99 Aligned_cols=178 Identities=10% Similarity=0.049 Sum_probs=93.4
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC---EeCCCCccccccccC--CCc
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS---SVGDGTYFLQEYTIP--RGS 164 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G---~~i~~~~~~~~~~~~--~~~ 164 (350)
+.++++ + |++.+|++++|+|+||||||||+++|++..+. .+.|.|.+.| .++.. +.. ..+. ...
T Consensus 152 i~aID~---~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~--~~~-~~l~~~g~~ 220 (442)
T PRK06315 152 VRCIDG---M-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVRE--FIE-GDLGEEGMK 220 (442)
T ss_pred EEEEec---c-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHH--HHH-HHHHhcCCc
Confidence 567555 7 99999999999999999999999999998851 3446677655 33320 000 0011 111
Q ss_pred cceeeccccccccchhhhhHh--hHHHHHhhhhhhhhhhcCC--CcHHHHHHHHHHHHHcCCCCccccccceeeeecchh
Q 018829 165 NSFSLYDTRSLSDDASDNINM--IKLWIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 240 (350)
Q Consensus 165 ~~~~~~d~~~~~~~v~q~~~l--~~~~v~~~v~~~~~~~~~~--~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~ 240 (350)
..+++- +..+|++.. .+..+...++..+..++.. ...+...++.++++.+++... +++
T Consensus 221 ~svvvv------ats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~g------------epp 282 (442)
T PRK06315 221 RSVIVV------STSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAG------------EPP 282 (442)
T ss_pred eEEEEE------eCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCC------------CCc
Confidence 122200 001332221 1112333333333333211 124566778889999999410 011
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhchhhcCCCCC-ceEEEEec----hHHHhcccEEEEEecCCeEeecC
Q 018829 241 AVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD-KPVVVVTH----GDLLSLTDRARIRTYLGELLGIP 305 (350)
Q Consensus 241 ~~~~~~~~~LSGGqrQRvaIArALDEPts~Ld~g-~TVIiiTH----~~~~~~aDri~v~l~~G~iv~~g 305 (350)
.....+|+.||. +++-+ |-......| .|.|.+-. |.-.-++|.+. -+-+|.|+..-
T Consensus 283 ~~~gypP~~fS~-------l~~ll-ERag~~~~GSITai~tVl~~gdD~~dpi~d~~~-~i~dg~ivLsr 343 (442)
T PRK06315 283 ARAGYTPSVFST-------LPKLL-ERSGASDKGTITAFYTVLVAGDDMNEPVADEVK-SILDGHIVLSN 343 (442)
T ss_pred cccCCCCchhhH-------hHHHH-HHhcCCCCcceeeeEEEEecCCCCCcccHHHhh-hhcceEEEEec
Confidence 246889999882 34333 111111222 44443333 32334566664 36677777653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=79.76 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHH-HHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLV-NRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl-~~I~gl~~ 131 (350)
.++|+|++|||||||+ +++.|.+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999 68888876
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=8e-07 Score=66.06 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.2
Q ss_pred CeeEeEEEeC-CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~-Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.++++.+ |.+++|+||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3446778875 56999999999999999999988776
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=78.60 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+|++++|+|+||||||||+++|++++. + +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcccC
Confidence 589999999999999999999999998 6 578887653
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-06 Score=88.07 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=54.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+.++.+.++..|..+ +.+ |+++ |+|.+|++++|+|+||+|||||+++|++... ++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~tG--i~a---ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG--IRA---IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC--cee---eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECCC
Confidence 357788888888544 456 5559 9999999999999999999999999999998 898888777653
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-06 Score=79.51 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=96.15 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=51.6
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh-------------------chhhcCCCC----------------CceEEEE
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------------DEPts~Ld~----------------g~TVIii 280 (350)
|+|-.+...+.+..|||||++|++||+|| |||+++||+ |++|+||
T Consensus 937 ~~~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~ii 1016 (1042)
T TIGR00618 937 VADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGII 1016 (1042)
T ss_pred EEeCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34444455778899999999999999886 999999874 8899999
Q ss_pred ec--hHHHhcccEEEEEecCC
Q 018829 281 TH--GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G 299 (350)
|| .....+||+|.| ++.+
T Consensus 1017 sH~~~~~~~~~~~i~v-~~~~ 1036 (1042)
T TIGR00618 1017 SHVPEFRERIPHRILV-KKTN 1036 (1042)
T ss_pred eCcHHHHHhhCCEEEE-EECC
Confidence 99 577799999964 7643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=77.43 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=31.7
Q ss_pred EEeCCcEEEEEcCCCChHHHH-HHHHHhccCCCCCCCcccEEEEC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSL-VNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTL-l~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
-+++|++++|+||+||||||| +++++++.+ +....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEe
Confidence 368899999999999999999 699999877 444445554
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-06 Score=76.91 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
|++++|+||||||||||+++|++.+. + .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----C---eEEEcCEECC
Confidence 78999999999999999999999887 5 4777776654
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-06 Score=87.01 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=37.2
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
+.++++ + |+|.+|++++|+|+||||||||+++|+|+.. ++.+
T Consensus 143 i~aID~---l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-----~dv~ 184 (434)
T PRK07196 143 VNAING---L-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-----ADVV 184 (434)
T ss_pred eeeccc---e-EeEecceEEEEECCCCCCccHHHHHHhcccC-----CCeE
Confidence 456544 9 9999999999999999999999999999998 7653
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-06 Score=86.77 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=45.4
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc---cEEEECCEeCC
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 150 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i~ 150 (350)
+.+ ++++ |++.+||+++|+|+||+|||||+++|++... ++. |.|..+|.++.
T Consensus 139 i~a---id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 139 VRA---IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVT 193 (428)
T ss_pred cEE---Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHH
Confidence 456 5559 9999999999999999999999999999988 666 88888888764
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.8e-06 Score=90.33 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecC
Q 018829 248 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 298 (350)
Q Consensus 248 ~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~ 298 (350)
..|||||+||++||+++ |||+++++. +.|||+||| ..+...||+++ +|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~-~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHF-KVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEE-EEEE
Confidence 46999999999999886 999999763 899999999 44456899996 4887
Q ss_pred Ce
Q 018829 299 GE 300 (350)
Q Consensus 299 G~ 300 (350)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-06 Score=79.90 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++++|+||||||||||+++|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999987
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=74.12 Aligned_cols=54 Identities=9% Similarity=-0.014 Sum_probs=38.3
Q ss_pred hccCCCCCCHHHHH-----HHHHHHHh----------chhhcCCC-------------------CCceEEEEec--hH--
Q 018829 243 LKSMEGDSDVEKQY-----NQIVATTF----------NCPYLSFR-------------------DDKPVVVVTH--GD-- 284 (350)
Q Consensus 243 ~~~~~~~LSGGqrQ-----RvaIArAL----------DEPts~Ld-------------------~g~TVIiiTH--~~-- 284 (350)
.+..+..+|+|++| +..+.+++ |+|++.++ .|.|+|+++| ..
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 36677888999888 34444432 89987765 1889999999 22
Q ss_pred -------HHhcccEEEEEec
Q 018829 285 -------LLSLTDRARIRTY 297 (350)
Q Consensus 285 -------~~~~aDri~v~l~ 297 (350)
+..+||.++ .|+
T Consensus 145 ~~~~~~~~~~~aD~ii-~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVI-RLR 163 (187)
T ss_pred cccCcCceeEeeeEEE-EEE
Confidence 568899995 465
|
A related protein is found in archaea. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=82.39 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=43.2
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+.+ ++.+ |.+.+|++++|+|+||+|||||+++|++... ++.|.+..-|+.
T Consensus 57 i~a---iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer 106 (326)
T cd01136 57 VRA---IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGER 106 (326)
T ss_pred cEE---Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecC
Confidence 456 4449 9999999999999999999999999999999 888887775543
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=68.04 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+++|.||+|+|||||++.+++... +..+.+.+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEEC
Confidence 378999999999999999999988 66677766543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-06 Score=87.67 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=44.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHh-------------------chhh-cCCCC--------------CceEEEEec-hHHHhc
Q 018829 244 KSMEGDSDVEKQYNQIVATTF-------------------NCPY-LSFRD--------------DKPVVVVTH-GDLLSL 288 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIArAL-------------------DEPt-s~Ld~--------------g~TVIiiTH-~~~~~~ 288 (350)
...+..|||||+||++||+|| |||+ ++||. +.|||+||| ......
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK 542 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh
Confidence 445678999999999999762 9998 66763 789999999 455567
Q ss_pred ccEEEEEecC-CeE
Q 018829 289 TDRARIRTYL-GEL 301 (350)
Q Consensus 289 aDri~v~l~~-G~i 301 (350)
||++++ |.+ |+.
T Consensus 543 ~d~~~~-l~~~~~~ 555 (562)
T PHA02562 543 FDRHLK-MEKVGRF 555 (562)
T ss_pred hhcEEE-EEEECCe
Confidence 999965 664 543
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-06 Score=87.65 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=54.4
Q ss_pred EEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 77 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+.|++..|+.. .+ ++++++.+..|+.++|+||||||||||+++|.|+++ |.+|++.+....+.
T Consensus 187 ~~d~~~v~Gq~---~~---~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE---QG---KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH---HH---HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecchhh
Confidence 45888888643 34 555999999999999999999999999999999999 99999999887653
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-06 Score=79.24 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 142 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I 142 (350)
+..++||.||||||||||+++|+++++ +..|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 457999999999999999999999999 888873
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-05 Score=71.53 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-+|++|++++|++++|+||||+|||||++.+....
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 56699999999999999999999999999998864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-06 Score=86.57 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCC
Q 018829 249 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 249 ~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G 299 (350)
.|||||+||++||+++ |||+++|+. +.+||+||| ..++.+||+.++ +.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~-v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFF-VSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE-Eecc
Confidence 4899999999999997 999999763 789999999 456689999964 7664
Q ss_pred e
Q 018829 300 E 300 (350)
Q Consensus 300 ~ 300 (350)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.7e-06 Score=83.89 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=42.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|+.
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGer 200 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGER 200 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccC
Confidence 4459 9999999999999999999999999999999 888999888754
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-06 Score=84.85 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=41.7
Q ss_pred CeeEeEEE---eCCcE-----EEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I---~~Ge~-----iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++++.+ ++|+. +||+|++|||||||++.|.+++.... ...|.|.+||..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcccc
Confidence 55588877 56776 99999999999999999999998210 13688999987654
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-06 Score=82.35 Aligned_cols=43 Identities=14% Similarity=0.367 Sum_probs=38.2
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
+++.++.|+.++|+||+|||||||+++|+++++ +..+.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEcC
Confidence 446788999999999999999999999999999 8888888753
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.4e-06 Score=93.99 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=51.2
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
++.+.|.++......+..|||||+||++||+++ |||+++||. +.++|||||
T Consensus 1072 ~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1072 GIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHN 1151 (1179)
T ss_pred CceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcC
Confidence 344556666677889999999999999999985 999999874 678999999
Q ss_pred hHHHhcccEEEE
Q 018829 283 GDLLSLTDRARI 294 (350)
Q Consensus 283 ~~~~~~aDri~v 294 (350)
.....+||+++.
T Consensus 1152 ~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1152 KGTMEVADQLYG 1163 (1179)
T ss_pred hhHHHHhhhHee
Confidence 445577999964
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-05 Score=69.80 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++.+|+. .|++++- ++.|+|.||||||||+..|+-...
T Consensus 23 lPa~r~l~~-~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 23 LPAFRHLEE-RLEFRAP-ITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred chHHHhhhh-hccccCc-eEEEEcCCCccHHHHHHHHHhhcc
Confidence 345444442 4555443 889999999999999999986554
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.4e-06 Score=83.58 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=42.8
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+|.+.+|++++|+|+||+|||||+++|++... |+.|.|.+.|+..
T Consensus 133 ~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~ 178 (418)
T TIGR03498 133 TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERG 178 (418)
T ss_pred eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeec
Confidence 699999999999999999999999999999999 9999998888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.7e-06 Score=82.36 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++-+.++..|..+ +.+++. + |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+...|+.
T Consensus 112 ~~R~~~~~~~~tG--i~~id~---l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDVG--VRAING---L-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeeee--EEeecc---e-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecC
Confidence 4455566666533 456444 8 9999999999999999999999999999998 887776665543
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=79.82 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++..++|+||+||||||++++|.+.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999885
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.2e-05 Score=84.41 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=26.5
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+||.+...-.+.|+||+|||||||++.|...+.
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~ 481 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFR 481 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 445444444799999999999999999988765
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.6e-06 Score=81.74 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=43.5
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+..
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~ 175 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERG 175 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccch
Confidence 5559 9999999999999999999999999999998 8999888888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.8e-06 Score=82.68 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=42.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|..
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~~ 182 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGER 182 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEccC
Confidence 5559 9999999999999999999999999999999 999988876543
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.5e-06 Score=71.76 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999886
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.8e-06 Score=90.60 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=52.3
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
++.+.|.|+......+..||||||++++||++| |||+++||+ +.++|+|||
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 455666666666778899999999999999998 999999874 678999999
Q ss_pred hHHHhcccEEEE
Q 018829 283 GDLLSLTDRARI 294 (350)
Q Consensus 283 ~~~~~~aDri~v 294 (350)
..+..+||+++.
T Consensus 1137 ~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1137 SPMIEYADRAIG 1148 (1164)
T ss_pred HHHHHhcceeEe
Confidence 566689999965
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.6e-06 Score=87.57 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=25.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHH--HhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I--~gl~~ 131 (350)
=+++|..+.|.||+|||||||...+ .|...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~ 48 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH 48 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3789999999999999999999876 45544
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=80.61 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=42.9
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+.+++. + |.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+...|..
T Consensus 145 Ir~ID~---l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 145 IKAIDA---F-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ceeecc---e-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 456544 6 9999999999999999999999999999998 888888766643
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.9e-06 Score=72.09 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=27.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 5558888877755 9999999999999999987
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.89 E-value=8e-06 Score=78.66 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=31.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
.++||.||||||||||+++|.+++.. .|.+|.|.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~---~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSR---WPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh---cCCCCceEEEecc
Confidence 58999999999999999999999862 1557787775554
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.9e-06 Score=75.58 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++||.||||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=81.87 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=41.8
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc---cEEEECCEeCC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 150 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i~ 150 (350)
|++.+|++++|+|+||+|||||+++|+++.. ++. |.|.+.|.++.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVK 217 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHH
Confidence 9999999999999999999999999999998 775 89999998874
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.2e-05 Score=79.59 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=42.0
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++.+.-.+++|++++|+|+||+|||||++.|.|... +..|+|.+++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~ 232 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSK 232 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCC
Confidence 444566688999999999999999999999999999 999999997643
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-05 Score=71.26 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999876
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=80.58 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=43.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|+...
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGergr 196 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGERGR 196 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCccch
Confidence 4458 9999999999999999999999999999888 78888888776543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=87.56 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=45.9
Q ss_pred eecchhhh-hccCCCCCCHHHHHHHHHHHHh-----------------chhhcCCCC----------------CceEEEE
Q 018829 235 FVVDGLAV-LKSMEGDSDVEKQYNQIVATTF-----------------NCPYLSFRD----------------DKPVVVV 280 (350)
Q Consensus 235 ~vv~~~~~-~~~~~~~LSGGqrQRvaIArAL-----------------DEPts~Ld~----------------g~TVIii 280 (350)
+|+|-.+. ..+.+..|||||+|+++||+|| |||+.+||+ |+||+||
T Consensus 934 ~~~d~~~~~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~ii 1013 (1047)
T PRK10246 934 EVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVI 1013 (1047)
T ss_pred eeeehhccCCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 44553322 2478899999999999999996 999999874 8999999
Q ss_pred ec--hHHHhcccEEEE
Q 018829 281 TH--GDLLSLTDRARI 294 (350)
Q Consensus 281 TH--~~~~~~aDri~v 294 (350)
|| ....++..+|.|
T Consensus 1014 sH~~~l~~~i~~qi~V 1029 (1047)
T PRK10246 1014 SHVEAMKERIPVQIKV 1029 (1047)
T ss_pred ecHHHHHHhccceEEE
Confidence 99 455577777743
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.5e-05 Score=80.94 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=34.8
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.++++ + |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~---l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSING---L-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecc---e-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567555 8 9999999999999999999999999999887
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.1e-05 Score=68.27 Aligned_cols=33 Identities=12% Similarity=0.389 Sum_probs=25.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
-.++|+|++|||||||++.|.+..... ..|+.|
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g 47 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH-ITPTQG 47 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC
Confidence 469999999999999999999963211 116666
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.3e-05 Score=65.66 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|++|+|||||++.|.+-
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35899999999999999999984
|
|
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.3e-05 Score=71.00 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++++++.+| +++|+||||+||||++.+|.-++-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 56688888887 999999999999999999987775
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.2e-05 Score=78.42 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=37.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++|++++++|||||||||++..|++.+. +..++|.+.+.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCcc
Confidence 5789999999999999999999999998 88889998887763
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.7e-05 Score=71.76 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=35.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-cccEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~ 150 (350)
++|.+++|+|+||||||||++.|.+.+. + ..|.+.++|.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCEeHH
Confidence 5789999999999999999999999775 3 3468999987653
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.6e-05 Score=89.26 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=42.0
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+.+..|++.+| +++|+|+|||||||++++|++++. |..|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCcc
Confidence 55578999886 999999999999999999999998 888999998765
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.5e-06 Score=83.12 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=35.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 141 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~ 141 (350)
+++.++.+++|.+++++|||||||||++..|++.+. ...|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCC
Confidence 334777888999999999999999999999999887 66653
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=86.06 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=42.1
Q ss_pred ccCCCCCCHHHHHHHHHH------HHh---------chhhcCCCC----------------CceEEEEec-hHHHhcccE
Q 018829 244 KSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIA------rAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDr 291 (350)
...+..|||||+|+++|| +++ ||||++||. +.|||+||| ..+...||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 467789999999965555 454 999999874 579999999 556678999
Q ss_pred EEEEec
Q 018829 292 ARIRTY 297 (350)
Q Consensus 292 i~v~l~ 297 (350)
+++ |.
T Consensus 863 ~~~-l~ 867 (880)
T PRK03918 863 VIR-VS 867 (880)
T ss_pred EEE-EE
Confidence 964 76
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.4e-05 Score=78.53 Aligned_cols=54 Identities=26% Similarity=0.233 Sum_probs=45.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCc-------EEEEEcCCCChHHHHHHHHHhcc
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge-------~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.+.+++.+++|+|.... .+ ++.++|+++.|+ .++|+|.+|+|||||++.|.|-.
T Consensus 16 ~g~~~~~~~~~~~~~~~--~~---~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 16 KGDTEALAAAVREDAST--GS---TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred CCccccccccccCCCCc--cc---ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 35678999999997433 35 555999999999 99999999999999999998743
|
|
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.4e-05 Score=79.14 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=33.8
Q ss_pred EEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 90 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 90 ~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++. + |.+.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~---l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINA---M-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecc---e-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 456444 7 9999999999999999999999999999887
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.6e-05 Score=71.69 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+||||||||||+++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999884
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.1e-05 Score=75.19 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=28.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
++||+|+||||||||+++|++++. +..|.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEEC
Confidence 489999999999999999999998 776755543
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.1e-05 Score=84.58 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=37.2
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
++++..++++++|+|++|+|||||+++++..+.. ...|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeecc
Confidence 5677888999999999999999999999665541 56799998763
|
syringae 6; Provisional |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.2e-05 Score=84.09 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=42.2
Q ss_pred ccCCCCCCHHHHHHHHHH------HHh---------chhhcCCCC------------------C-ceEEEEec-hHHHhc
Q 018829 244 KSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD------------------D-KPVVVVTH-GDLLSL 288 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIA------rAL---------DEPts~Ld~------------------g-~TVIiiTH-~~~~~~ 288 (350)
...+..|||||++|++|| |++ ||||++||+ + .|||+||| ......
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 456788999999999765 666 999999874 2 38999999 455678
Q ss_pred ccEEEEEec
Q 018829 289 TDRARIRTY 297 (350)
Q Consensus 289 aDri~v~l~ 297 (350)
||+++. +.
T Consensus 876 ~d~ii~-~~ 883 (895)
T PRK01156 876 ADVAYE-VK 883 (895)
T ss_pred cCeEEE-EE
Confidence 999965 54
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.1e-05 Score=87.49 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=34.8
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHH----HhccCCCCCCCc-ccEEEECCEeC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRI----SKVFENDKFASE-RAQVTYNSSVG 149 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I----~gl~~~~~~~p~-~G~I~i~G~~i 149 (350)
|+|. +| +++|+|||||||||++.+| .|..+ |. +|.+++.+.++
T Consensus 24 I~F~--~~-~~~I~G~NGaGKTTil~ai~~al~G~~~-----~~~~g~~~i~~~~~ 71 (1311)
T TIGR00606 24 IDFF--SP-LTILVGPNGAGKTTIIECLKYICTGDFP-----PGTKGNTFVHDPKV 71 (1311)
T ss_pred eecc--cc-eEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCceEecCCCc
Confidence 5554 44 9999999999999999999 58888 75 68888877554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.5e-05 Score=68.04 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
++++++++|+||+|||||+|.|.+-.. ...|.|.-
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~-----~~t~~is~ 68 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK-----QKTGEISE 68 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS---------S----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc-----hhhhhhhc
Confidence 358999999999999999999999766 55566653
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.7e-05 Score=70.74 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.+++|.|+||||||||++.|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999999999999885
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.1e-05 Score=76.44 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=41.2
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.+++..|++.++.....+..|.+++| +++|+.+.|+||+|+|||+|+.+|.....
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356777777754432112222555899 99999999999999999999999976554
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=4e-05 Score=74.03 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+|.+++++|+||+|||||+|+|.|... +..|.|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~-----~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE-----LKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC-----CCCcceec
Confidence 589999999999999999999999998 88899876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 6e-11
Identities = 56/383 (14%), Positives = 115/383 (30%), Gaps = 79/383 (20%)
Query: 3 GEKTTSRFFTPEGEEIISPVDDFDIPLLSMNSGDDEGSRDSWDSLVDQRRRDAVFREVLQ 62
E+ +F EE++ F + + + D+ D +V
Sbjct: 75 QEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN---QVFA 127
Query: 63 SYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 122
Y+ +R+ + +L P + + G+ GSGK+ +
Sbjct: 128 KYN--VSRLQPYLKLRQALLELRPAKNV-LIDGV------------------LGSGKTWV 166
Query: 123 VNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS-DDAS 180
V + K + ++ + + E + D S D S
Sbjct: 167 AL---DVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 181 DNINMIKLWIMEGVRHGELVIRRSDSSSL------RNRMRCKAHKIGCEPSVIRKVNFVI 234
NI + I +R L+ + + L +N A + C+ + + V
Sbjct: 221 SNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 235 FVVDGLAVLK-SMEGDSDV--EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL----- 286
+ S++ S + ++ +C D P V+T
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIA 334
Query: 287 -SLTDR-ARIRTY-------LGELLG-----IPPA--KQIFD----IPESSD-PENELII 325
S+ D A + L ++ + PA +++FD P S+ P L +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 326 V--DMLRYCLEHADRNLSCKSCA 346
+ D+++ + L S
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 128/374 (34%)
Query: 41 RDSWDSLVDQRRRDAVFREVLQSYD-QLR----TRIGSLTDAKNKILSYTPGAWIENVGG 95
+ ++ + +++ + TR +TD + + T + +
Sbjct: 251 LNVQNA------------KAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMT 297
Query: 96 MT-------LSDY------DVP---KTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFAS 137
+T L Y D+P TT+ + + K DK +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 138 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS---DNIN-----MIKLW 189
SS+ N + R + D S + + + +W
Sbjct: 358 -----IIESSL----------------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 190 ----------IMEGVRHGELVIRRSDSS-----SLRNRMRCKAHKIGCEPSVIRKVNFVI 234
++ + LV ++ S S+ ++ K E ++ R +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRSI---- 449
Query: 235 FVVDGLAVLKSMEGDS---DVEKQY--NQIV-----------ATTFNCPYLSF------- 271
VD + K+ + D QY + I T F +L F
Sbjct: 450 --VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 272 RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRY 331
R D + L +L ++ Y I D +DP+ E ++ +L +
Sbjct: 508 RHDSTAWNASGSILNTLQQ---LKFYK---------PYICD----NDPKYERLVNAILDF 551
Query: 332 CLEHADRNLSCKSC 345
+ + + K
Sbjct: 552 LPKIEENLICSKYT 565
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 6e-05
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 109 LLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 166
+L++G G GKSS VN I +V F SE + + R +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-------------VMVSRSRAGFT 88
Query: 167 FSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSL 209
++ DT L + N +N+IK ++++ L + R D+ +
Sbjct: 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.94 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.9 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.87 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.79 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.78 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.76 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.75 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.73 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.73 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.72 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.71 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.7 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.68 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.68 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.67 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.66 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.65 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.61 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.6 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.55 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.51 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.51 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.5 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.5 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.49 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.47 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.46 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.46 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.45 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.45 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.44 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.43 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.41 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.4 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.4 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.35 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.34 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.32 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.32 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.31 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.31 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.3 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.3 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.3 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.29 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.29 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.25 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.25 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.2 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.19 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.19 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.18 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.13 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.13 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.13 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.12 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.11 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.11 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.09 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.08 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.04 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.03 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.03 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.03 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.02 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.01 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.01 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.97 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.96 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.93 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.9 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.89 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.89 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.86 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.86 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.84 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.81 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.8 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.77 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.73 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.68 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.68 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.63 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.58 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.57 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.54 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.52 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.47 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.45 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.44 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.39 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.38 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.36 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.36 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.34 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.33 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.26 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.26 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.22 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.21 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.19 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.19 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.18 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.15 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.14 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.08 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.05 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.05 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.03 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.03 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.02 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.02 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.01 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.0 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.96 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.96 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.92 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.89 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.89 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.87 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.87 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.85 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.85 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.83 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.78 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.77 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.73 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.66 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.64 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.64 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.6 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.6 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.59 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.57 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.55 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.54 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.54 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.53 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.51 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.5 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.48 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.43 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.43 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.4 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.39 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.38 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.27 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.26 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.21 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.21 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.18 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.17 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.17 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.14 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.13 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.11 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.09 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.06 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.04 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.04 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.04 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.0 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.0 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.99 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.95 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.94 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.93 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.92 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.89 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.88 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.88 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.87 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.86 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.85 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.84 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.83 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.82 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.81 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.79 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.77 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.76 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.75 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.73 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.72 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.71 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.69 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.68 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.68 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.67 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.66 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.61 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.6 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.6 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.6 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.59 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.58 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.58 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.58 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.57 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.55 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.55 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.5 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.49 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.48 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.48 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.48 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.47 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.47 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.47 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.46 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.46 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.46 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.45 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.44 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.43 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.43 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.43 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.42 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.42 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.41 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.41 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.4 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.4 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.4 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.39 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.38 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.38 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.37 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.35 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.35 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.35 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.35 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.35 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.34 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.33 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.33 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.32 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.31 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.3 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.3 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.3 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.29 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.28 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.26 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.26 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.26 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.25 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.24 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.24 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.23 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.22 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.22 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.2 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.2 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.2 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.18 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.18 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.17 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.17 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.17 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.16 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.16 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.15 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.14 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.14 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.14 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.13 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.11 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.11 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.1 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.1 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.08 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.08 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.07 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.06 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.06 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.06 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.05 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.05 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.05 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.05 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.04 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.04 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.03 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.02 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.02 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.02 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.01 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.01 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.0 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.99 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.99 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.99 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.98 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.97 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.96 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.96 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.93 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.92 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.92 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.91 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.91 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.9 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.9 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.9 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.88 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.87 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.87 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.87 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.86 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.85 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.85 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.84 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.84 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.84 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.83 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.83 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.83 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.82 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.82 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.8 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.8 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.8 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.8 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.78 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.76 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.73 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.73 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.73 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.72 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.71 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.7 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.68 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.67 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.66 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.66 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.65 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.64 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.64 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.63 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.61 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.61 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.6 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.6 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.59 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.58 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.56 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.54 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.54 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.53 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.52 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.51 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.49 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.46 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.46 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.45 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.45 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.42 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.36 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.36 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.35 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.35 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.35 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.31 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.3 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.3 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.27 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.27 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.26 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.23 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.19 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.17 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.14 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.14 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.05 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.03 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.98 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 94.9 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.89 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 94.88 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.88 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.87 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.86 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.84 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.81 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.81 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.78 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.75 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.71 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.68 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.65 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.62 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.6 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.59 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 94.56 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.55 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.48 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.46 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.43 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.41 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.41 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.4 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.39 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.32 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.32 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.31 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 94.23 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.2 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.18 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.16 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.16 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.15 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.09 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 94.06 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.02 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.99 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.99 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.95 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.93 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.91 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.89 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.89 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.87 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.87 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.85 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 93.84 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.83 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.79 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 93.73 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.72 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 93.69 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=359.31 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=173.5
Q ss_pred CCCcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 71 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++|+++||+++|+.+ ..+++ |++|||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 45789999999999643 22456 666999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
...... .....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++|+.+||.+
T Consensus 93 ~~~~~~-~~~~~r~~Ig~v~Q~~~l~~~~----------TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~----- 155 (366)
T 3tui_C 93 TTLSES-ELTKARRQIGMIFQHFNLLSSR----------TVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD----- 155 (366)
T ss_dssp SSCCHH-HHHHHHTTEEEECSSCCCCTTS----------CHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGG-----
T ss_pred CcCCHH-HHHHHhCcEEEEeCCCccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 621111 1111123567777766544332 4455555544322 2345677788999999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+++++|.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 156 ------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 156 ------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp ------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+.+.++||||+ +|++|++++.|++++++..|.+++++.++..
T Consensus 224 l~~~~~~aDrv~-vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 224 MDVVKRICDCVA-VISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp HHHHHHHCSEEE-EEETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 57788999996 5999999999999999999998887777654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=353.16 Aligned_cols=208 Identities=13% Similarity=0.194 Sum_probs=168.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~i~~ls~~y~~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 3 AALHIGHLSKSFQN---TPV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSK 71 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESS
T ss_pred cEEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 37999999999974 345 677999999999999999999999999999999999 9999999999987310
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.......++.+++++|+.. +++. ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 72 --~~~~~~~~r~ig~vfQ~~~-----------l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 130 (359)
T 3fvq_A 72 --NTNLPVRERRLGYLVQEGV-----------LFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISE------- 130 (359)
T ss_dssp --SCBCCGGGSCCEEECTTCC-----------CCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGG-------
T ss_pred --ccccchhhCCEEEEeCCCc-----------CCCCCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCch-------
Confidence 0011112234556555544 3443 6677777765532 2345667788999999999988
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 131 ----------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 ----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56999999999999999999999 999999984 899999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++..+||||+ +|++|+|++.|++++++..|...+.+.++
T Consensus 201 ea~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~~a~~~ 239 (359)
T 3fvq_A 201 EALQYADRIA-VMKQGRILQTASPHELYRQPADLDAALFI 239 (359)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSCHHHHHHH
T ss_pred HHHHHCCEEE-EEECCEEEEEeCHHHHHhCcccHHHHHhc
Confidence 7889999996 59999999999999999988765544444
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=352.02 Aligned_cols=206 Identities=12% Similarity=0.152 Sum_probs=170.0
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~yg~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~- 69 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND- 69 (381)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC-
Confidence 46999999999974 345 677999999999999999999999999999999999 999999999999862
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.+++++|+...+..+ ++.+|+.++.... ..++++.++++.++++.+++.+
T Consensus 70 -----~~~~~r~ig~VfQ~~~l~p~l----------tV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (381)
T 3rlf_A 70 -----TPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH-------- 125 (381)
T ss_dssp -----CCGGGSCEEEECTTCCCCTTS----------CHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred -----CCHHHCCEEEEecCCcCCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123456666665444332 5556666655432 3445677888999999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred ---------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+..+||||+ +|++|++++.|++++++..|...+++.++.
T Consensus 197 a~~~aDri~-vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 197 AMTLADKIV-VLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHhCCEEE-EEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 889999996 599999999999999999998777665543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=335.80 Aligned_cols=202 Identities=13% Similarity=0.204 Sum_probs=159.5
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|+.+.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~ls~~y~~~~~--~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~ 74 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTH--A---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDY 74 (275)
T ss_dssp CEEEEEEEEEEECTTSCE--E---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCC
T ss_pred CcEEEEEEEEEEECCCCe--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCc
Confidence 357999999999975433 4 777999999999999999999999999999999999 999999999999841
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. ...... .++.++|++|++.. .++..++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 75 ~-~~~~~~-~~~~ig~v~Q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------- 135 (275)
T 3gfo_A 75 S-RKGIMK-LRESIGIVFQDPDN---------QLFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEH------- 135 (275)
T ss_dssp S-HHHHHH-HHHSEEEECSSGGG---------TCCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c-cccHHH-HhCcEEEEEcCccc---------ccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 000001 12356677776421 111224455555544322 2345667788999999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
++++++.+||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 136 ----------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 136 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp ----------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 56899999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+..+||||+ +|++|++++.|++++++..
T Consensus 206 ~~~~~~drv~-~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 206 IVPLYCDNVF-VMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp SGGGGCSEEE-EEETTEEEEEECHHHHTHH
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHhcC
Confidence 7788999996 5999999999999998764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=342.40 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=166.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+. ....+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~i~~l~~~y~~-~~~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 2 VRIIVKNVSKVFKK-GKVVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASN 72 (353)
T ss_dssp CCEEEEEEEEEEGG-GTEEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEET
T ss_pred cEEEEEeEEEEECC-Eeeee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECccc
Confidence 46999999999964 22014 777999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .......++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 73 ~-~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 132 (353)
T 1oxx_K 73 G-KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH-------- 132 (353)
T ss_dssp T-EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred c-cccCChhhCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 0 000111123456666654443322 5667777665422 2334566778999999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+||| ++
T Consensus 133 ---------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 133 ---------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 204 ~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 241 (353)
T 1oxx_K 204 IFAIADRVG-VLVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (353)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 788999996 59999999999999999988766554444
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=328.12 Aligned_cols=211 Identities=16% Similarity=0.125 Sum_probs=161.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC-
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG- 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~- 151 (350)
++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 47999999999964 234 777999999999999999999999999999999999 999999999998741
Q ss_pred ----C----ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC
Q 018829 152 ----T----YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 152 ----~----~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
. .........++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 143 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCC----------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 0 00000000122456777765444332 34444444321111223345567788999999998
Q ss_pred Cccccccceeeeecchhhh-hccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceE
Q 018829 224 PSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 277 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~-~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TV 277 (350)
+ . +++++.+||||||||++||||| ||||++||+ |+||
T Consensus 144 ~-----------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 144 E-----------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp H-----------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred c-----------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 7 5 6899999999999999999999 999999874 8999
Q ss_pred EEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 278 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 278 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
|++|| +.+..+||+++ +|++|++++.|++++++..+..++++.+
T Consensus 207 i~vtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 252 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVI-FLHQGKIEEEGDPEQVFGNPQSPRLQQF 252 (262)
T ss_dssp EEECSCHHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCCSHHHHHH
T ss_pred EEEeCCHHHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcchHHHHHH
Confidence 99999 56778999996 5999999999999999887665544433
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=339.72 Aligned_cols=205 Identities=14% Similarity=0.207 Sum_probs=165.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (362)
T 2it1_A 2 VEIKLENIVKKFGN-F--TA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE- 69 (362)
T ss_dssp CCEEEEEEEEESSS-S--EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEeEEEEECC-E--EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc-
Confidence 36999999999964 2 34 777999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.+++++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (362)
T 2it1_A 70 -----LPPKDRNVGLVFQNWALYPHM----------TVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDK-------- 125 (362)
T ss_dssp -----SCGGGTTEEEECTTCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred -----CCHhHCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123566776665544333 4555555554322 2334566778999999999988
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 126 ---------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+||||+ +|++|++++.|++++++..|...+.+.++
T Consensus 197 a~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~~ 234 (362)
T 2it1_A 197 ALAMADRIA-VIREGEILQVGTPDEVYYKPKYKFVGGFL 234 (362)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHHc
Confidence 788999996 59999999999999999988766554443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=328.51 Aligned_cols=206 Identities=14% Similarity=0.182 Sum_probs=159.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y~~---~~v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~-~ 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGS---LEV---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK-A 90 (263)
T ss_dssp CSEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS-S
T ss_pred heEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC-C
Confidence 47999999999964 234 777999999999999999999999999999999999 99999999999874 1
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....... .++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+++.+
T Consensus 91 ~~~~~~~-~~~~i~~v~Q~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------- 151 (263)
T 2olj_A 91 KDTNLNK-VREEVGMVFQRFNLFPHM----------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-------- 151 (263)
T ss_dssp TTCCHHH-HHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred ccccHHH-HhCcEEEEeCCCcCCCCC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch--------
Confidence 0000001 123467777765544332 344444443211112233455677889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
++++++.+||||||||++||||| ||||++||+ |+|||++|| +.+
T Consensus 152 ---------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 152 ---------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 45899999999999999999999 999999874 899999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCCh
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 319 (350)
..+||+++ +|++|++++.|++++++..+...++
T Consensus 223 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
T 2olj_A 223 REVGDRVL-FMDGGYIIEEGKPEDLFDRPQHERT 255 (263)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCCSHHH
T ss_pred HHhCCEEE-EEECCEEEEECCHHHHHhCcccHHH
Confidence 78999996 5999999999999999887655443
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=342.64 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=163.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 M~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEECC---EEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 456999999999964 245 677999999999999999999999999999999999 999999999999851
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....++.++|+ +|+..+++. ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 78 ------~~~~~r~ig~v-----------~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------ 133 (372)
T 1v43_A 78 ------LPPKDRNISMV-----------FQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 133 (372)
T ss_dssp ------SCGGGGTEEEE-----------EC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ------CChhhCcEEEE-----------ecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 11111234444 455455554 6778887765432 2334556778999999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|++||
T Consensus 134 -----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 134 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+++..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 203 ~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~a~~~ 242 (372)
T 1v43_A 203 VEAMTMGDRIA-VMNRGQLLQIGSPTEVYLRPNSVFVATFI 242 (372)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 57788999996 59999999999999999988766555444
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=338.42 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=167.1
Q ss_pred CCCcEEEEEEEEEE-CCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 71 IGSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y-~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
..++|+++||+++| +. .. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 11 ~~~~l~~~~l~~~y~g~-~~--v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 79 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG-AR--S---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRV 79 (355)
T ss_dssp CCEEEEEEEEEECCTTS-TT--C---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEEEEEEEcCC-CE--E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEEC
Confidence 34689999999999 54 22 3 777999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.. ....++.+++++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 80 ~~------~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~----- 137 (355)
T 1z47_A 80 TD------LPPQKRNVGLVFQNYALFQHM----------TVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLES----- 137 (355)
T ss_dssp TT------CCGGGSSEEEECGGGCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred Cc------CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh-----
Confidence 51 111123456666665444332 5555665554322 2334566788999999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+|||
T Consensus 138 ------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 138 ------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+++..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 206 ~~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 206 QEEALEVADRVL-VLHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 57788999996 59999999999999999988766554444
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=338.82 Aligned_cols=205 Identities=13% Similarity=0.192 Sum_probs=165.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (359)
T 2yyz_A 2 PSIRVVNLKKYFGK---VKA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND- 69 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC-
Confidence 36999999999964 345 677999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (359)
T 2yyz_A 70 -----IPPKYREVGMVFQNYALYPHM----------TVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN-------- 125 (359)
T ss_dssp -----SCGGGTTEEEECSSCCCCTTS----------CHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG--------
T ss_pred -----CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123456666665444322 5666666654322 1223344577899999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|++|| ++
T Consensus 126 ---------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 126 ---------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 197 ~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 234 (359)
T 2yyz_A 197 AMTMASRIA-VFNQGKLVQYGTPDEVYDSPKNMFVASFI 234 (359)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 788999996 59999999999999999988766554444
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=337.87 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=161.2
Q ss_pred HHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHH
Q 018829 52 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 123 (350)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl 123 (350)
.+..|+.++++.+++.... ..+.|+++||+|+|+++..+ |+++||+|++||++||+||||||||||+
T Consensus 23 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCCCchHHHHH
Confidence 4566888888876653221 13469999999999654434 7779999999999999999999999999
Q ss_pred HHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC
Q 018829 124 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 203 (350)
Q Consensus 124 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~ 203 (350)
++|+|+++ |++|+|.++|+++.... ... .++.++|++|++..|.. ++.+|+.++...
T Consensus 98 ~ll~gl~~-----p~~G~I~i~G~~i~~~~---~~~-~r~~i~~v~Q~~~lf~~-----------Tv~eNi~~~~~~--- 154 (306)
T 3nh6_A 98 RLLFRFYD-----ISSGCIRIDGQDISQVT---QAS-LRSHIGVVPQDTVLFND-----------TIADNIRYGRVT--- 154 (306)
T ss_dssp HHHTTSSC-----CSEEEEEETTEETTSBC---HHH-HHHTEEEECSSCCCCSE-----------EHHHHHHTTSTT---
T ss_pred HHHHcCCC-----CCCcEEEECCEEcccCC---HHH-HhcceEEEecCCccCcc-----------cHHHHHHhhccc---
Confidence 99999999 99999999999986210 001 12345666666554433 455566554321
Q ss_pred CCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-
Q 018829 204 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 273 (350)
Q Consensus 204 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~- 273 (350)
. ..+++.++++.+++.+.+...++++.. ...+.+.+||||||||++||||| ||||++||.
T Consensus 155 ~----~~~~~~~~~~~~~l~~~i~~lp~gl~t------~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 A----GNDEVEAAAQAAGIHDAIMAFPEGYRT------QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp C----CHHHHHHHHHHHTCHHHHHHSTTGGGC------EESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred C----CHHHHHHHHHHhCcHHHHHhccchhhh------HhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 1 123455566666665422111111111 33566789999999999999999 999999984
Q ss_pred --------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 274 --------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 274 --------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
++|+|+||| ..+. .||+|+ +|++|+|++.|++++++..
T Consensus 225 ~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~aD~i~-vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 225 NERAIQASLAKVCANRTTIVVAHRLSTVV-NADQIL-VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCSHHHHH-TCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcChHHHH-cCCEEE-EEECCEEEEECCHHHHHhc
Confidence 899999999 4554 499996 5999999999999998864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=339.27 Aligned_cols=210 Identities=12% Similarity=0.152 Sum_probs=165.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~ 71 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPE 71 (372)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGG
T ss_pred EEEEEeEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECcccc
Confidence 6999999999964 345 677999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
........++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 72 ~~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 131 (372)
T 1g29_1 72 KGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE--------- 131 (372)
T ss_dssp GTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG---------
T ss_pred ccccCCHhHCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch---------
Confidence 0000111123556666665544333 4555555554322 2334566778999999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+||| +++
T Consensus 132 --------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 203 (372)
T 1g29_1 132 --------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203 (372)
T ss_dssp --------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 56999999999999999999999 999999984 899999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 204 ~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 240 (372)
T 1g29_1 204 MTMGDRIA-VMNRGVLQQVGSPDEVYDKPANTFVAGFI 240 (372)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHhCCEEE-EEeCCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 88999996 59999999999999999888765554443
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=319.56 Aligned_cols=203 Identities=18% Similarity=0.147 Sum_probs=153.2
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+|+++||+++|+.+. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999996432 2345 677999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...+.....++.++|++|+...+..+ ++.+|+.++.... ...+..+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----- 137 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred CHHHHHHHhhccEEEEecCCccCCCC----------cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh-----
Confidence 11111111122456777766544332 4445555443221 122345667788899999999862
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-~ 283 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||+||| -
T Consensus 138 -----------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 24889999999999999999999 999999974 899999999 3
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
.+..+|||++ +|++|++++.++++++.
T Consensus 207 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 207 NVARFGERII-YLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTSSEEE-EEETTEEEEEEECC---
T ss_pred HHHHhCCEEE-EEECCEEEEEcChhhhc
Confidence 4568999996 59999999998877653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=338.86 Aligned_cols=201 Identities=13% Similarity=0.181 Sum_probs=163.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+++|++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 58999999999642 3 778999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.++|++|+...+..+ ++.+|+.++..... .+.. +++.++++.++|.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~l----------tv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~--------- 119 (348)
T 3d31_A 67 ----LSPEKHDIAFVYQNYSLFPHM----------NVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEH--------- 119 (348)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTS----------CHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTT---------
T ss_pred ----CchhhCcEEEEecCcccCCCC----------CHHHHHHHHHHHcC-CCHH---HHHHHHHHHcCCch---------
Confidence 111123456666665554433 45555555443221 1222 67889999999988
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|++|| +++
T Consensus 120 --------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 120 --------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp --------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999974 899999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
..+|||++ +|++|++++.|++++++..|...+.+.++.
T Consensus 192 ~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 192 RIMADRIA-VVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHCSEEE-EESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHhCCEEE-EEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 89999996 599999999999999999988777666554
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=321.72 Aligned_cols=196 Identities=13% Similarity=0.205 Sum_probs=153.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECC---Eee---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 457999999999964 245 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh-hcC-----------CCcHHHHHHHHHHHHH
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKAHK 219 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~-~~~-----------~~~~~~~~~i~~~l~~ 219 (350)
. ......++.+++++|+...+.. .++.+|+.++... ... ......++++.++++.
T Consensus 74 ~---~~~~~~~~~i~~v~q~~~l~~~----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (257)
T 1g6h_A 74 K---EPAELYHYGIVRTFQTPQPLKE----------MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140 (257)
T ss_dssp C---CHHHHHHHTEEECCCCCGGGGG----------SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred C---CHHHHHhCCEEEEccCCccCCC----------CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH
Confidence 1 0000111234555555433322 1556666654322 101 2234556778899999
Q ss_pred cCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------C
Q 018829 220 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 274 (350)
Q Consensus 220 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g 274 (350)
+|+.+ .+++++.+||||||||++||||| ||||++||+ |
T Consensus 141 ~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 141 LKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp TTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 99987 56899999999999999999999 999999974 8
Q ss_pred ceEEEEec--hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 275 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 275 ~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
+|||++|| +.+..+||+++ +|++|++++.|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLY-VMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEE-EEETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEE-EEECCEEEEEeCHHH
Confidence 99999999 57778999996 599999999998887
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=312.04 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=161.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++||+++|+. + |+++||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4799999999963 4 7779999999 9999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.++|++|+...+..+ ++.+|+.++..... ....++++.++++.+|+.+
T Consensus 65 ----~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~l~~--------- 118 (240)
T 2onk_A 65 ----LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLRNVE---RVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp ----SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCTTSC---HHHHHHHHHHHHHTTTCTT---------
T ss_pred ----CchhhCcEEEEcCCCccCCCC----------cHHHHHHHHHHHcC---CchHHHHHHHHHHHcCCHH---------
Confidence 111233567777765444332 44555555432111 1223567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
++++++.+||||||||++||||| ||||++||+ |+|||++|| +.+
T Consensus 119 --------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999974 799999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 328 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 328 (350)
..+||+++ +|++|++++.|++++++..+ ..+++.++...+.
T Consensus 191 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~ 231 (240)
T 2onk_A 191 AMLADEVA-VMLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HHhCCEEE-EEECCEEEEECCHHHHHhCc-hHHHHHHhcCCcc
Confidence 78999996 59999999999999999887 7776665544333
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=322.56 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=155.3
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~---~~v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ---QAL---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCC---eeE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 468999999999974 344 777999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .... ++.+++++|+...+.. .++.+|+.++.... .....++++.++++.+++.+
T Consensus 78 ~~---~~~~-~~~i~~v~q~~~~~~~----------~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~------- 133 (266)
T 4g1u_C 78 WQ---PKAL-ARTRAVMRQYSELAFP----------FSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLA------- 133 (266)
T ss_dssp SC---HHHH-HHHEEEECSCCCCCSC----------CBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCST-------
T ss_pred CC---HHHH-hheEEEEecCCccCCC----------CCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChh-------
Confidence 11 0001 1234666665443222 24556666554322 22345677889999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------------chhhcCCCC-----------------CceEEE
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPts~Ld~-----------------g~TVIi 279 (350)
+.++++.+||||||||++||||| ||||++||+ ++|||+
T Consensus 134 ----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 134 ----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45889999999999999999997 999999984 579999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
||| +.+..+|||++ +|++|++++.|++++++.
T Consensus 204 vtHdl~~~~~~~d~v~-vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 204 VLHDLNLAALYADRIM-LLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ECSCHHHHHHHCSEEE-EEETTEEEEEECHHHHCC
T ss_pred EEcCHHHHHHhCCEEE-EEECCEEEEEcCHHHHhC
Confidence 999 57778999996 599999999999998865
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=317.53 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=157.2
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEECC---EEE---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 5789999999999964 244 777999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.. ... .++.++|++|+...+..+ |.+|+.++. ... ..+..+.++++.++++.+++.+
T Consensus 81 ~~----~~~-~~~~i~~v~q~~~l~~~ltv~enl~~~~-----------~~~-~~~~~~~~~~~~~~l~~~gL~~----- 138 (256)
T 1vpl_A 81 EE----PHE-VRKLISYLPEEAGAYRNMQGIEYLRFVA-----------GFY-ASSSSEIEEMVERATEIAGLGE----- 138 (256)
T ss_dssp TC----HHH-HHTTEEEECTTCCCCTTSBHHHHHHHHH-----------HHH-CCCHHHHHHHHHHHHHHHCCGG-----
T ss_pred cc----HHH-HhhcEEEEcCCCCCCCCCcHHHHHHHHH-----------HHc-CCChHHHHHHHHHHHHHCCCch-----
Confidence 20 011 123567888876655443 555554421 111 1223344567889999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-- 282 (350)
++++++.+||||||||++||||| ||||++||+ |+|||++||
T Consensus 139 ------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 139 ------------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp ------------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45889999999999999999999 999999874 899999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+..+||+++ +|++|++++.|++++++..
T Consensus 207 ~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 207 LEVEFLCDRIA-LIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTTCSEEE-EEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHCCEEE-EEECCEEEEecCHHHHHHh
Confidence 56778999996 5999999999999888654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=308.84 Aligned_cols=193 Identities=18% Similarity=0.123 Sum_probs=148.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~---~~~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRG---YEI---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECC---Eee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 47999999999964 244 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
...+.....++.++|++|+...+..+ ++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPEL----------TALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGD-------- 132 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCC----------CHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 10000011113467777766544433 3334444332211 1223445677889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +.+
T Consensus 133 ---------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 133 ---------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 45899999999999999999999 999999874 899999999 344
Q ss_pred HhcccEEEEEecCCeEeecCC
Q 018829 286 LSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~ 306 (350)
.+||+++ +|++|++++.|+
T Consensus 204 -~~~d~v~-~l~~G~i~~~g~ 222 (224)
T 2pcj_A 204 -ELTHRTL-EMKDGKVVGEIT 222 (224)
T ss_dssp -TTSSEEE-EEETTEEEEEEE
T ss_pred -HhCCEEE-EEECCEEEEEee
Confidence 8999996 599999998875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=312.82 Aligned_cols=197 Identities=15% Similarity=0.222 Sum_probs=154.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-I--HA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECC-e--eE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 357999999999964 2 34 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC-CCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~ 230 (350)
.. .....++.++|++|+...+..+ ++.+|+.++... .......++.+.++++.++ +.+
T Consensus 73 ~~---~~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~------ 131 (240)
T 1ji0_A 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred CC---HHHHHhCCEEEEecCCccCCCC----------cHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh------
Confidence 10 1111122467777766544332 444555443211 1123345567788899994 876
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 132 -----------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 45889999999999999999999 999999874 899999999 4
Q ss_pred HHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.+.++||+++ +|++|++++.|++++++.
T Consensus 201 ~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 201 GALKVAHYGY-VLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHCSEEE-EEETTEEEEEEEHHHHHT
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHhc
Confidence 6788999996 599999999999988865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=315.87 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=154.9
Q ss_pred cEEEEEEEEEEC-CCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~-~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+|+++||+++|+ ++. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECch
Confidence 689999999996 221 0234 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC--Ccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 228 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~-~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~~~ 228 (350)
... ++.++|++|+. ..+. ..++.+|+.++.... .+....++++.++++.+|+. +
T Consensus 74 ------~~~-~~~i~~v~q~~~~~~~----------~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~---- 130 (266)
T 2yz2_A 74 ------YEI-RRNIGIAFQYPEDQFF----------AERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS---- 130 (266)
T ss_dssp ------HHH-GGGEEEECSSGGGGCC----------CSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH----
T ss_pred ------HHh-hhhEEEEeccchhhcC----------CCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc----
Confidence 111 23456776653 1221 124556665543221 11223346788899999998 7
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 -------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 131 -------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp -------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56899999999999999999999 999999874 799999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 316 (350)
+.+..+||+++ +|++|++++.|++++++..+..
T Consensus 198 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 198 IETVINHVDRVV-VLEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CTTTGGGCSEEE-EEETTEEEEEEEHHHHHHHSCC
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCccc
Confidence 56778999996 5999999999999998876554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=310.99 Aligned_cols=203 Identities=14% Similarity=0.142 Sum_probs=147.1
Q ss_pred cEEEEEEEEEEC-CCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~-~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
-++++||+++|+ .+. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP--VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSC--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCc--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 489999999993 233 34 777999999999999999999999999999999999 9999999999998511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ... .++.++|++|+...+ ..++.+|+.++.. ... .+++.++++.+++.+.+.+.++.
T Consensus 77 ~---~~~-~~~~i~~v~Q~~~l~-----------~~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~g 134 (247)
T 2ff7_A 77 D---PNW-LRRQVGVVLQDNVLL-----------NRSIIDNISLANP---GMS----VEKVIYAAKLAGAHDFISELREG 134 (247)
T ss_dssp C---HHH-HHHHEEEECSSCCCT-----------TSBHHHHHTTTCT---TCC----HHHHHHHHHHHTCHHHHHTSTTG
T ss_pred C---HHH-HHhcEEEEeCCCccc-----------cccHHHHHhccCC---CCC----HHHHHHHHHHhChHHHHHhCcch
Confidence 0 001 122456666655433 2255566655421 111 23456677777776521000000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEech-HHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH~-~~~~ 287 (350)
+ .+.+++++.+||||||||++||||| ||||++||. |+|||++||+ ....
T Consensus 135 l------~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 135 Y------NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp G------GCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred h------hhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 0 0123456789999999999999999 999999874 8999999992 3334
Q ss_pred cccEEEEEecCCeEeecCCccccccCCC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
.||+++ +|++|++++.|++++++..|.
T Consensus 209 ~~d~v~-~l~~G~i~~~g~~~~l~~~~~ 235 (247)
T 2ff7_A 209 NADRII-VMEKGKIVEQGKHKELLSEPE 235 (247)
T ss_dssp TSSEEE-EEETTEEEEEECHHHHHTSTT
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCc
Confidence 699996 599999999999999987764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=339.31 Aligned_cols=234 Identities=12% Similarity=0.157 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|........+..|+.++++.+++.... ...+++++||+|+|+++. .++ |+|+||+|++||+++|+||||
T Consensus 304 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~i~l~i~~G~~~~ivG~sG 379 (582)
T 3b5x_A 304 VTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPA---LSHVSFSIPQGKTVALVGRSG 379 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEECCCCEEEEECCCC
Confidence 4555666667778999999876553211 134799999999997432 134 666999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+|+|+|+++ |++|+|.++|+++.. +...+.+...++|+|++.++..++.+|+.+
T Consensus 380 sGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b5x_A 380 SGKSTIANLFTRFYD-----VDSGSICLDGHDVRD---------------YKLTNLRRHFALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred CCHHHHHHHHhcCCC-----CCCCEEEECCEEhhh---------------CCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence 999999999999999 999999999999851 111112223344455555555577778776
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. .. ..++++.++++.+++.+.+.+.++++.. ..++.+.+||||||||++||||| |||
T Consensus 440 ~~~--~~----~~~~~~~~~~~~~~l~~~~~~~p~g~~t------~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEp 507 (582)
T 3b5x_A 440 AAE--GE----YTREQIEQAARQAHAMEFIENMPQGLDT------VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA 507 (582)
T ss_pred cCC--CC----CCHHHHHHHHHHCCCHHHHHhCcccccc------hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 531 01 1235577788888887643322333333 33456789999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|++||+ |+|+|+||| -...+.||+|+ +|++|++++.|++++++..
T Consensus 508 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 508 TSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL-VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999874 899999999 23345799996 5999999999999999865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=313.32 Aligned_cols=203 Identities=13% Similarity=0.098 Sum_probs=151.9
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~y~~-~--~v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG-K--TI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPG 86 (279)
T ss_dssp -CEEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC
T ss_pred CCceEEEEeEEEEECC-E--EE---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence 3457999999999964 2 34 777999999999999999999999999999999999 99999999998763
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh---cCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
... ..... .++.++|++|+...+.. ...++.+|+.++.... .........+++.++++.+|+.+
T Consensus 87 ~~~-~~~~~-~~~~i~~v~Q~~~~~~~--------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 153 (279)
T 2ihy_A 87 KVG-YSAET-VRQHIGFVSHSLLEKFQ--------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA--- 153 (279)
T ss_dssp ----CCHHH-HHTTEEEECHHHHTTSC--------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG---
T ss_pred ccc-CCHHH-HcCcEEEEEcCcccccC--------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh---
Confidence 000 00001 12235555554332110 0015556665543210 01122445677889999999987
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceE--EEE
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV--VVV 280 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TV--Iii 280 (350)
.+++++.+||||||||++||||| ||||++||. |+|| |+|
T Consensus 154 --------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iiv 219 (279)
T 2ihy_A 154 --------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYV 219 (279)
T ss_dssp --------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 45899999999999999999999 999999984 7899 999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
|| +.+..+||+++ +|++|++++.|++++++.
T Consensus 220 tHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 220 THFIEEITANFSKIL-LLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp ESCGGGCCTTCCEEE-EEETTEEEEEEEHHHHCS
T ss_pred ecCHHHHHHhCCEEE-EEECCEEEEECCHHHHhc
Confidence 99 56678999996 599999999999988764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=306.56 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=147.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+++|+++.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~- 69 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ--I---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNI- 69 (243)
T ss_dssp CEEEEEEEECSSSSSC--S---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTT-
T ss_pred CEEEEEEEEEeCCCCc--e---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC-
Confidence 5899999999942332 3 777999999999999999999999999999999999 9999999999998521
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.. ...++.++|++|+...+.. ++.+|+.++... .. ..+++.++++.+++.+.+.+.++.+
T Consensus 70 --~~-~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 70 --SL-ENWRSQIGFVSQDSAIMAG-----------TIRENLTYGLEG--DY----TDEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp --SC-SCCTTTCCEECCSSCCCCE-----------EHHHHTTSCTTS--CS----CHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred --CH-HHHHhhEEEEcCCCccccc-----------cHHHHHhhhccC--CC----CHHHHHHHHHHhChHHHHHhCccch
Confidence 11 1123356777776544422 455666554210 11 1245677888888876321100000
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~ 287 (350)
.+.+++++.+||||||||++||||| ||||++||+ |+|||++|| +.+ .
T Consensus 130 ------~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-~ 202 (243)
T 1mv5_A 130 ------NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-V 202 (243)
T ss_dssp ------GCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHH-H
T ss_pred ------hchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-H
Confidence 1123456789999999999999999 999999984 899999999 344 4
Q ss_pred cccEEEEEecCCeEeecCCcccccc
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.||+++ +|++|++++.|++++++.
T Consensus 203 ~~d~v~-~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 203 DADKIY-FIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HCSEEE-EEETTEECCCSCHHHHHH
T ss_pred hCCEEE-EEECCEEEEeCCHHHHHh
Confidence 699996 599999999999988765
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=304.20 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=144.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEeCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 2 SQLEIRDLWASIDG-E--TI---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENIL 70 (250)
T ss_dssp CEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECT
T ss_pred ceEEEEeEEEEECC-E--EE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECC
Confidence 37999999999964 2 34 7779999999999999999999999999999998 78 99999999999975
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC-Ccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIR 228 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~ 228 (350)
... .....+..+++++|+...+..+ +.+++.+..... ........+..+++.++++.+|+. +
T Consensus 71 ~~~---~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~gl~~~---- 134 (250)
T 2d2e_A 71 ELS---PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK---------LGREVGVAEFWTKVKKALELLDWDES---- 134 (250)
T ss_dssp TSC---HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHTCCGG----
T ss_pred CCC---HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhh---------ccccCCHHHHHHHHHHHHHHcCCChh----
Confidence 211 1111122456777776655544 555554322110 000012234456788899999995 5
Q ss_pred ccceeeeecchhhhhccCCCC-CCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~-LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH 282 (350)
+.++++.+ ||||||||++||||| ||||++||. |+|||++||
T Consensus 135 -------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 135 -------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp -------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred -------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45889998 999999999999999 999999873 799999999
Q ss_pred --hHHHhc-ccEEEEEecCCeEeecCCcc
Q 018829 283 --GDLLSL-TDRARIRTYLGELLGIPPAK 308 (350)
Q Consensus 283 --~~~~~~-aDri~v~l~~G~iv~~g~~~ 308 (350)
+.+..+ ||+++ +|++|++++.|+++
T Consensus 202 d~~~~~~~~~d~v~-~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 202 YQRILNYIQPDKVH-VMMDGRVVATGGPE 229 (250)
T ss_dssp SSGGGGTSCCSEEE-EEETTEEEEEESHH
T ss_pred CHHHHHHhcCCEEE-EEECCEEEEEeCHH
Confidence 566677 59996 59999999998875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.04 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=184.4
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
.|........+..|+.++++.+++.... ..+.|+++||+|+|+.+...++ |+|+||+|++||.+|||||
T Consensus 1037 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~ 1113 (1321)
T 4f4c_A 1037 YFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGP 1113 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECC
Confidence 4566677777788999999887664322 2236999999999964332234 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|.|+|+ |++|+|.+||.|+. .+.+.+.|..+++|+|++.+|..++.+||
T Consensus 1114 SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~---------------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI 1173 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYD-----TLGGEIFIDGSEIK---------------TLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173 (1321)
T ss_dssp TTSSTTSHHHHHTTSSC-----CSSSEEEETTEETT---------------TBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred CCChHHHHHHHHhcCcc-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEECCCCEeeCccHHHHH
Confidence 99999999999999999 99999999999997 23333444444445555555555666676
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.+|... .+..++++.++++.+++.+.+...++++...|++. ...||||||||+|||||| |
T Consensus 1174 ~~gld~-----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~------G~~LSgGQrQriaiARAllr~~~ILiLD 1242 (1321)
T 4f4c_A 1174 IYGLDP-----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR------GTQLSGGQKQRIAIARALVRNPKILLLD 1242 (1321)
T ss_dssp SSSSCT-----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT------SCSSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hccCCC-----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC------CcccCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 665421 12245678888999999876666666777766554 568999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
||||+||. ++|+|+||| -.....||||+ ||++|+|+|.|+|+++++..
T Consensus 1243 EaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~-Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1243 EATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIA-VVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEE-EESSSSEEEEECHHHHHHCC
T ss_pred CccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99999984 899999999 34556799996 59999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=341.16 Aligned_cols=234 Identities=12% Similarity=0.129 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
.|........+..|+.++++.+++..+. ..+.++++||+|+|+++. .++ |+|+||+|++||++||+||
T Consensus 300 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~G~~~~ivG~ 375 (578)
T 4a82_A 300 SFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGM 375 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECC
Confidence 4566667777788999999877654221 124599999999997533 134 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|+|+++ |++|+|.++|+++.. ..... .++.+++++|++..+.+ ++.+|+
T Consensus 376 sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~---~~~~~-~r~~i~~v~Q~~~l~~~-----------tv~eni 435 (578)
T 4a82_A 376 SGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKD---FLTGS-LRNQIGLVQQDNILFSD-----------TVKENI 435 (578)
T ss_dssp TTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGG---SCHHH-HHHTEEEECSSCCCCSS-----------BHHHHH
T ss_pred CCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhh---CCHHH-HhhheEEEeCCCccCcc-----------cHHHHH
Confidence 99999999999999999 999999999999861 00001 12345666666555443 455566
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.++.. . ..++++.++++.+++.+.+...+++... ...+.+.+||||||||++||||| |
T Consensus 436 ~~~~~---~----~~~~~~~~~~~~~~~~~~~~~lp~g~~t------~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD 502 (578)
T 4a82_A 436 LLGRP---T----ATDEEVVEAAKMANAHDFIMNLPQGYDT------EVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502 (578)
T ss_dssp GGGCS---S----CCHHHHHHHHHHTTCHHHHHTSTTGGGC------BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred hcCCC---C----CCHHHHHHHHHHhCcHHHHHhCcchhhh------hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 55432 1 1124456667777765533222222222 23445678999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
|||++||+ ++|+|+||| -...+.||||+ +|++|++++.|++++++..+
T Consensus 503 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~-~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 503 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV-VIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp STTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99999874 899999999 23345699996 59999999999999998753
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=312.00 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=146.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|+.+...++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred CceEEEEEEEEEeCCCCCcee---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEccc
Confidence 357999999999964210123 777999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHH-----HHHHHHHHHHHc--CCCC
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GCEP 224 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~-----~~~~i~~~l~~~--gl~~ 224 (350)
..... .++.++|++|+...+.. ++.+|+.++.... ..... ....+.++++.+ |+..
T Consensus 86 ---~~~~~-~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~ 148 (271)
T 2ixe_A 86 ---YDHHY-LHTQVAAVGQEPLLFGR-----------SFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDT 148 (271)
T ss_dssp ---BCHHH-HHHHEEEECSSCCCCSS-----------BHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGS
T ss_pred ---CCHHH-HhccEEEEecCCccccc-----------cHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhh
Confidence 00101 12245677776544432 4445555443210 01011 122345567777 6665
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.+++++.+||||||||++||||| ||||++||. |+|||
T Consensus 149 -----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvi 211 (271)
T 2ixe_A 149 -----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211 (271)
T ss_dssp -----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEE
T ss_pred -----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEE
Confidence 34788999999999999999999 999999863 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+||| +.+ ..||+++ +|++|++++.|++++++..
T Consensus 212 ivtHd~~~~-~~~d~v~-~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 212 LITQQLSLA-ERAHHIL-FLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EECSCHHHH-TTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred EEeCCHHHH-HhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 9999 344 4599996 5999999999999988754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=328.06 Aligned_cols=202 Identities=13% Similarity=0.125 Sum_probs=157.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.|+++||+|+|+.+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~y~~~~-~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGG-NAI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDS 86 (390)
T ss_dssp SCCEEEEEEEEESSSSS-CCS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTS
T ss_pred CCeEEEEEEEEEecCCC-eEE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCc
Confidence 35799999999995332 234 777999999999999999999999999999999985 57999999998862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ... .++.+++++|+...+. .++.+|+.+... ..++++.++++.+++.+
T Consensus 87 ~~---~~~-~rr~ig~v~Q~~~lf~-----------~tv~enl~~~~~--------~~~~~v~~~l~~~~L~~------- 136 (390)
T 3gd7_A 87 IT---LEQ-WRKAFGVIPQKVFIFS-----------GTFRKNLDPNAA--------HSDQEIWKVADEVGLRS------- 136 (390)
T ss_dssp SC---HHH-HHHTEEEESCCCCCCS-----------EEHHHHHCTTCC--------SCHHHHHHHHHHTTCHH-------
T ss_pred CC---hHH-HhCCEEEEcCCcccCc-----------cCHHHHhhhccc--------cCHHHHHHHHHHhCCHH-------
Confidence 10 000 1234566666655443 344555542111 12356778899999987
Q ss_pred eeeeecchhhhhccCCCC-----------CCHHHHHHHHHHHHh---------chhhcCCCC---------------Cce
Q 018829 232 FVIFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKP 276 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~T 276 (350)
+++++|.+ ||||||||++||||| ||||++||. ++|
T Consensus 137 ----------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 137 ----------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp ----------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred ----------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 56888887 999999999999999 999999873 899
Q ss_pred EEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 277 VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 277 VIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+|++|| ..+...||||+ +|++|+|++.|++++++..|.+.+++.++.
T Consensus 207 vi~vtHd~e~~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFL-VIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp EEEECSSSGGGTTCSEEE-EEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred EEEEEcCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999 45566799996 599999999999999999998777666654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=338.67 Aligned_cols=233 Identities=10% Similarity=0.087 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|........+..|+.++++.+++..+. ...+++++||+|+|+++ .++ |+|+||+|++||++||+|||
T Consensus 304 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~~G~~~~ivG~s 378 (582)
T 3b60_A 304 VNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIPAGKTVALVGRS 378 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEcCCCEEEEECCC
Confidence 4555666667778999999876553221 13479999999999743 333 77899999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|+++... .... .++.+++++|++..+.+ ++.+|+.
T Consensus 379 GsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~~---~~~~-~~~~i~~v~Q~~~l~~~-----------tv~eni~ 438 (582)
T 3b60_A 379 GSGKSTIASLITRFYD-----IDEGHILMDGHDLREY---TLAS-LRNQVALVSQNVHLFND-----------TVANNIA 438 (582)
T ss_dssp TSSHHHHHHHHTTTTC-----CSEEEEEETTEETTTB---CHHH-HHHTEEEECSSCCCCSS-----------BHHHHHH
T ss_pred CCCHHHHHHHHhhccC-----CCCCeEEECCEEcccc---CHHH-HHhhCeEEccCCcCCCC-----------CHHHHHh
Confidence 9999999999999999 9999999999998611 0001 12245666666554433 4555555
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. .. ..++++.++++.+++.+.+.+.++++.. ..++.+.+||||||||++||||| ||
T Consensus 439 ~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~p~g~~~------~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE 506 (582)
T 3b60_A 439 YART--EE----YSREQIEEAARMAYAMDFINKMDNGLDT------IIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_dssp TTTT--SC----CCHHHHHHHHHTTTCHHHHHHSTTGGGS------BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred ccCC--CC----CCHHHHHHHHHHcCCHHHHHhccccccc------cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5431 01 1135577788888886643222223322 23456789999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. |+|+|+||| -...+.||+|+ +|++|++++.|++++++..
T Consensus 507 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV-VVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 9999984 899999999 33445799996 5999999999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=340.63 Aligned_cols=232 Identities=16% Similarity=0.128 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
|......+.+..|+.++++.+++..+. ....++++||+|+|+++. .++ |+|+||+|++||+++|+|||
T Consensus 303 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~Ge~~~ivG~s 378 (587)
T 3qf4_A 303 LNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT-DPV---LSGVNFSVKPGSLVAVLGET 378 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCC-Ccc---eeceEEEEcCCCEEEEECCC
Confidence 455566667778999999876553221 224699999999996432 134 77799999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|+++.. ..... .++++++++|++..+.+ ++.+|+.
T Consensus 379 GsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~---~~~~~-~r~~i~~v~Q~~~lf~~-----------tv~eni~ 438 (587)
T 3qf4_A 379 GSGKSTLMNLIPRLID-----PERGRVEVDELDVRT---VKLKD-LRGHISAVPQETVLFSG-----------TIKENLK 438 (587)
T ss_dssp SSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGG---BCHHH-HHHHEEEECSSCCCCSE-----------EHHHHHT
T ss_pred CCCHHHHHHHHhCCcc-----CCCcEEEECCEEccc---CCHHH-HHhheEEECCCCcCcCc-----------cHHHHHh
Confidence 9999999999999999 999999999998851 00001 12345666666554433 4555655
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++... . .++++.++++.+++.+.+...++++.. ..++.+.+||||||||++||||| ||
T Consensus 439 ~~~~~---~----~~~~~~~~~~~~~~~~~i~~l~~g~~~------~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE 505 (587)
T 3qf4_A 439 WGRED---A----TDDEIVEAAKIAQIHDFIISLPEGYDS------RVERGGRNFSGGQKQRLSIARALVKKPKVLILDD 505 (587)
T ss_dssp TTCSS---C----CHHHHHHHHHHTTCHHHHHTSSSGGGC------EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred ccCCC---C----CHHHHHHHHHHhCcHHHHHhcccchhh------HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 44321 1 123344455555554322111111111 34677889999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. |+|+|+||| -.....||||+ +|++|++++.|+++++++.
T Consensus 506 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~-vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 506 CTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKIL-VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp CCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 9999874 899999999 33446899996 5999999999999998764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=300.53 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=151.0
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEe
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV 148 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~ 148 (350)
..++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 17 ~~~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~ 85 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED---KAI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD 85 (267)
T ss_dssp ---CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE
T ss_pred CCceEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEE
Confidence 3468999999999964 244 7779999999999999999999999999999999 57 899999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 149 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 149 i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
+... ......+..+++++|+...+..+ +.+++.+....... .++. ...+..+..+++.++++.+|+...
T Consensus 86 i~~~---~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~gl~~~-- 155 (267)
T 2zu0_C 86 LLAL---SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS--YRGQ---ETLDRFDFQDLMEEKIALLKMPED-- 155 (267)
T ss_dssp GGGS---CHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHH--GGGC---CCCCHHHHHHHHHHHHHHTTCCTT--
T ss_pred CCcC---CHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhh--hhcc---ccCCHHHHHHHHHHHHHHcCCChh--
Confidence 7411 01111122467888887666554 56655432111000 0110 011233445678899999999642
Q ss_pred cccceeeeecchhhhhccCCC-CCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiT 281 (350)
+.++++. +||||||||++||||| ||||++||. |+|||++|
T Consensus 156 --------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 156 --------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp --------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred --------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3477887 5999999999999999 999999873 78999999
Q ss_pred c--hHHHhc-ccEEEEEecCCeEeecCCccccc
Q 018829 282 H--GDLLSL-TDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 282 H--~~~~~~-aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
| +.+..+ ||+++ +|++|++++.|+++++.
T Consensus 222 Hd~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 222 HYQRILDYIKPDYVH-VLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp SSGGGGGTSCCSEEE-EEETTEEEEEECTTHHH
T ss_pred eCHHHHHhhcCCEEE-EEECCEEEEEcCHHHHh
Confidence 9 456665 89996 59999999999887664
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=341.64 Aligned_cols=231 Identities=15% Similarity=0.176 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|........+..|+.++++.+++.... ..+.|+++||+|+|+++.+ + |+|+||+|++||++||+|||
T Consensus 316 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~--~---l~~isl~i~~G~~~~ivG~s 390 (598)
T 3qf4_B 316 QFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--V---LKDITFHIKPGQKVALVGPT 390 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSC--S---CCSEEEECCTTCEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCc--c---ccceEEEEcCCCEEEEECCC
Confidence 4566666777788999999877653221 1235999999999975433 4 66699999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|+++... .... .++.+++++|++..+. .++.+|+.
T Consensus 391 GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~---~~~~-~r~~i~~v~Q~~~lf~-----------~tv~eni~ 450 (598)
T 3qf4_B 391 GSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRKI---KRSS-LRSSIGIVLQDTILFS-----------TTVKENLK 450 (598)
T ss_dssp TSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGGS---CHHH-HHHHEEEECTTCCCCS-----------SBHHHHHH
T ss_pred CCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhhC---CHHH-HHhceEEEeCCCcccc-----------ccHHHHHh
Confidence 9999999999999999 9999999999998610 0001 1234556666555443 34556665
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ..+ ++++.++++.+++.+.+...++++...+ .+.+.+||||||||++||||| ||
T Consensus 451 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~------~~~g~~LSgGq~Qrv~iAral~~~p~illlDE 517 (598)
T 3qf4_B 451 YGNP---GAT----DEEIKEAAKLTHSDHFIKHLPEGYETVL------TDNGEDLSQGQRQLLAITRAFLANPKILILDE 517 (598)
T ss_dssp SSST---TCC----TTHHHHHTTTTTCHHHHHTSTTGGGCBC------HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred cCCC---CCC----HHHHHHHHHHhCCHHHHHhccccccchh------cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 5422 111 2335556666766553322222222222 233468999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. |+|+|+||| +.+ +.||+|+ +|++|++++.|++++++..
T Consensus 518 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~-~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 518 ATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI-KNADLII-VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH-HHCSEEE-EECSSSEEECSCHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 9999984 899999999 444 4599996 5999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.45 Aligned_cols=233 Identities=13% Similarity=0.133 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
+..+...+.+..|+.++|+.+++.... ....|+++||+|+|+.....++ |+|+||+|++|+.+|||||
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEec
Confidence 445566666777999999887654322 1235999999999964322234 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|.|+|+ |++|+|.+||+++. .+.....+..+++|.|++.++..++.+||
T Consensus 453 sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~---------------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI 512 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYD-----VLKGKITIDGVDVR---------------DINLEFLRKNVAVVSQEPALFNCTIEENI 512 (1321)
T ss_dssp SSSCHHHHHHHHTTSSC-----CSEEEEEETTEETT---------------TSCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred CCCcHHHHHHHhccccc-----cccCcccCCCccch---------------hccHHHHhhcccccCCcceeeCCchhHHH
Confidence 99999999999999999 99999999999987 22333344444455555555555666666
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.+|.. ...++++.++++.+++++++..-++++...|++. ...||||||||++||||+ |
T Consensus 513 ~~g~~-------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~------G~~LSGGQkQRiaiARAl~~~~~IliLD 579 (1321)
T 4f4c_A 513 SLGKE-------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDR------GTQLSGGQKQRIAIARALVRNPKILLLD 579 (1321)
T ss_dssp HTTCT-------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSS------SCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hhhcc-------cchHHHHHHHHHHccchhHHHcCCCCCccEecCC------CCCCCHHHHHHHHHHHHHccCCCEEEEe
Confidence 66543 1234567888888888776666666777765544 568999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||+||. |+|+|+||| -...+.||+|+ +|++|+|++.|+|+++++.
T Consensus 580 E~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Ii-vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 580 EATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLII-SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEE-EEETTEEEEEECHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEE-EeeCCeeeccCCHHHHHHh
Confidence 99999984 899999999 45667899995 5999999999999999875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=292.79 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=145.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+.+..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 3 ~~l~i~~l~~~y~~~~~v-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~------- 65 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFL-----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEVY------- 65 (253)
T ss_dssp EEEEEEEEEEEETTTTEE-----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEEC-------
T ss_pred ceEEEeeEEEEeCCCCeE-----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEe-------
Confidence 379999999999722334 777999999999999999999999999999999999 999999821
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC---CCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
+.++|++|+...+..+ ++.+|+.++...... ......++++.++++.+|+.+
T Consensus 66 ----------~~i~~v~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 120 (253)
T 2nq2_C 66 ----------QSIGFVPQFFSSPFAY----------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH----- 120 (253)
T ss_dssp ----------SCEEEECSCCCCSSCC----------BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred ----------ccEEEEcCCCccCCCC----------CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----
Confidence 2457888876554332 333444443221100 122445677889999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 121 ------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 121 ------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+.+..+||+++ +|++|+ ++.|++++++.
T Consensus 189 ~~~~~~~~d~v~-~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 189 PNQVVAIANKTL-LLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHCSEEE-EEETTE-EEEEEHHHHCC
T ss_pred HHHHHHhCCEEE-EEeCCe-EecCCHHHHhC
Confidence 56778999996 599999 99999888754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-39 Score=300.03 Aligned_cols=203 Identities=11% Similarity=0.141 Sum_probs=145.0
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+.....++ |+++||+|++||+++|+||||||||||+|+|+|+++ | +|+|.++|+++..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~- 85 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNK- 85 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGG-
T ss_pred CeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhh-
Confidence 57999999999974311123 777999999999999999999999999999999998 8 7999999998741
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
..... .++.++|++|+...+.. ++.+|+.++.. ... .+++.++++.+++.+.+....+.
T Consensus 86 --~~~~~-~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~ 144 (260)
T 2ghi_A 86 --YNRNS-IRSIIGIVPQDTILFNE-----------TIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKK 144 (260)
T ss_dssp --BCHHH-HHTTEEEECSSCCCCSE-----------EHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTG
T ss_pred --cCHHH-HhccEEEEcCCCccccc-----------CHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhcccc
Confidence 00111 12346777776654432 44455554321 111 23455667777765411000000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEech-HHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH~-~~~~ 287 (350)
-.+..++++.+||||||||++||||| ||||++||. ++|||++||+ ....
T Consensus 145 ------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 145 ------WDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp ------GGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST
T ss_pred ------ccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 00013467889999999999999999 999999874 7899999992 3335
Q ss_pred cccEEEEEecCCeEeecCCccccccC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.||+++ +|++|++++.|++++++..
T Consensus 219 ~~d~i~-~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 219 SAESII-LLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp TCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhc
Confidence 699996 5999999999999988754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=296.70 Aligned_cols=185 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++||+++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|+++...
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~- 66 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAW- 66 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGS-
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcC-
Confidence 6999999986 13 888999999999999999999999999999999999 99 9999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.... .++.++|++|+...+..+ ++.+|+.++... .. . ++++.++++.+++.+
T Consensus 67 --~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~--~~--~--~~~~~~~l~~~~l~~--------- 118 (249)
T 2qi9_C 67 --SATK-LALHRAYLSQQQTPPFAT----------PVWHYLTLHQHD--KT--R--TELLNDVAGALALDD--------- 118 (249)
T ss_dssp --CHHH-HHHHEEEECSCCCCCTTC----------BHHHHHHTTCSS--TT--C--HHHHHHHHHHTTCGG---------
T ss_pred --CHHH-HhceEEEECCCCccCCCC----------cHHHHHHHhhcc--CC--c--HHHHHHHHHHcCChh---------
Confidence 0001 122356666665433221 455666554211 11 1 566888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh----------------chhhcCCCC----------------CceEEEEe
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 281 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPts~Ld~----------------g~TVIiiT 281 (350)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 119 --------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 119 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp --------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45889999999999999999998 699999874 78999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
| +.+..+||+++ +|++|++++.|++++++.
T Consensus 191 Hd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 191 HDLNHTLRHAHRAW-LLKGGKMLASGRREEVLT 222 (249)
T ss_dssp SCHHHHHHHCSEEE-EEETTEEEEEEEHHHHSC
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhc
Confidence 9 56678999996 599999999999988754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=293.18 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=145.3
Q ss_pred cEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++|++++|+.+ ...++ |+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~~~~~~i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~~- 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVRK- 69 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGGG-
T ss_pred CEEEEEEEEEeCCCCcccee---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECcc-
Confidence 58999999999631 00234 777999999 9999999999999999999999987 468999999998741
Q ss_pred ccccccccCCCccc-eeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC-Ccccccc
Q 018829 153 YFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~~~ 230 (350)
. .. ++.++ |++|+... ...+.+|+.+ +.... . ..++++.++++.+++. +
T Consensus 70 --~---~~-~~~i~~~v~Q~~~l-~~tv~enl~~-----------~~~~~-~----~~~~~~~~~l~~~gl~~~------ 120 (263)
T 2pjz_A 70 --I---RN-YIRYSTNLPEAYEI-GVTVNDIVYL-----------YEELK-G----LDRDLFLEMLKALKLGEE------ 120 (263)
T ss_dssp --C---SC-CTTEEECCGGGSCT-TSBHHHHHHH-----------HHHHT-C----CCHHHHHHHHHHTTCCGG------
T ss_pred --h---HH-hhheEEEeCCCCcc-CCcHHHHHHH-----------hhhhc-c----hHHHHHHHHHHHcCCChh------
Confidence 1 11 33566 77766544 2235555443 22111 1 1235678889999998 7
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
.+++++.+||||||||++||||| ||||++||. ..|||++|| +.+.
T Consensus 121 -----------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 121 -----------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp -----------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 45899999999999999999999 999999984 239999999 5677
Q ss_pred hccc-EEEEEecCCeEeecCCcccccc
Q 018829 287 SLTD-RARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 287 ~~aD-ri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++|| +++ +|++|++++.|++++++.
T Consensus 190 ~~~d~~i~-~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 190 LYKEYKAY-FLVGNRLQGPISVSELLE 215 (263)
T ss_dssp GCTTSEEE-EEETTEEEEEEEHHHHHT
T ss_pred HhcCceEE-EEECCEEEEecCHHHHHh
Confidence 8999 996 599999999999988874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=285.57 Aligned_cols=175 Identities=14% Similarity=0.217 Sum_probs=140.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
..+|+++||+++|+. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 468999999999964 44 788999999999999999999999999999999999 99999999998863
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .++.++|++|+...+..+ |.+|+.++ ...... . .. ++++.++++.+++.+
T Consensus 75 -----~---~~~~i~~v~q~~~~~~~~tv~enl~~~-----------~~~~~~-~-~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -----K---VKGKIFFLPEEIIVPRKISVEDYLKAV-----------ASLYGV-K-VN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -----G---GGGGEEEECSSCCCCTTSBHHHHHHHH-----------HHHTTC-C-CC-HHHHHHHHHHTTCCC------
T ss_pred -----h---hcCcEEEEeCCCcCCCCCCHHHHHHHH-----------HHhcCC-c-hH-HHHHHHHHHHcCCCc------
Confidence 1 133567888877655543 55555442 111111 1 12 456788999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
. ++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 788999999999999999999 999999985 789999999 5
Q ss_pred HHHhcccEEEEEecCCeE
Q 018829 284 DLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~i 301 (350)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 778899999 4 777776
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=280.89 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=135.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+.+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~----- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 70 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCS---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC-----
T ss_pred ceEEEEEEEEEeCCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE-----
Confidence 4799999999996322 134 777999999999999999999999999999999999 99999999981
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
++|++|+...+...|.+ |+.++.. .. . ....++++.+++.+.+....
T Consensus 71 ------------i~~v~q~~~~~~~tv~e-----------nl~~~~~----~~-~---~~~~~~~~~~~l~~~~~~~~-- 117 (229)
T 2pze_A 71 ------------ISFCSQFSWIMPGTIKE-----------NIIFGVS----YD-E---YRYRSVIKACQLEEDISKFA-- 117 (229)
T ss_dssp ------------EEEECSSCCCCSBCHHH-----------HHHTTSC----CC-H---HHHHHHHHHTTCHHHHTTST--
T ss_pred ------------EEEEecCCcccCCCHHH-----------HhhccCC----cC-h---HHHHHHHHHhCcHHHHHhCc--
Confidence 36777776554333444 4443321 01 1 11223344444432110000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
....+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 118 ----~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 118 ----EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp ----TGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred ----ccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 0000022456789999999999999999 999999763 789999999 344
Q ss_pred HhcccEEEEEecCCeEeecCCccccccC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
..||+++ +|++|++++.|++++++..
T Consensus 194 -~~~d~v~-~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 194 -KKADKIL-ILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp -HHCSEEE-EEETTEEEEEECHHHHHTC
T ss_pred -HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 4599996 5999999999999988764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=344.27 Aligned_cols=234 Identities=11% Similarity=0.109 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEc
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 113 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvG 113 (350)
.|..+...+.++.|+.++++.+++.... ..+.|+++||+|+|+++...++ |+|+||+|++||++||+|
T Consensus 347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG 423 (1284)
T 3g5u_A 347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVG 423 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEEC
Confidence 3555666677788999999877653221 1235999999999974322234 777999999999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhh
Q 018829 114 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 193 (350)
Q Consensus 114 pnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~ 193 (350)
|||||||||+++|+|+++ |++|+|.++|.++.. .... ..++.+++++|++..+. .++.+|
T Consensus 424 ~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~---~~~~-~~r~~i~~v~Q~~~l~~-----------~ti~eN 483 (1284)
T 3g5u_A 424 NSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRT---INVR-YLREIIGVVSQEPVLFA-----------TTIAEN 483 (1284)
T ss_dssp CSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGG---SCHH-HHHHHEEEECSSCCCCS-----------SCHHHH
T ss_pred CCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHh---CCHH-HHHhheEEEcCCCccCC-----------ccHHHH
Confidence 999999999999999999 999999999999861 0000 11223555555554443 455556
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------
Q 018829 194 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--------- 264 (350)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--------- 264 (350)
+.++... .. .+++.++++.+++.+.+....+++.. ...+.+.+||||||||++|||||
T Consensus 484 i~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t------~~~~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 484 IRYGRED---VT----MDEIEKAVKEANAYDFIMKLPHQFDT------LVGERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp HHHHCSS---CC----HHHHHHHHHHTTCHHHHHHSTTGGGC------CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HhcCCCC---CC----HHHHHHHHHHhCcHHHHHhccccccc------cccCCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6554321 11 23344555555554322111122221 23566789999999999999999
Q ss_pred chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 265 NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 265 DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||++||. |+|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 551 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~-vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIA-GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEE-ECSSSCCCCEECHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999999973 899999999 33345599996 5999999999999998765
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=281.58 Aligned_cols=185 Identities=14% Similarity=0.175 Sum_probs=133.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+.+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~-~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSD-PPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CCEEEEEEEEESCTTS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred CeEEEEEEEEEeCCCC-Cce---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 3699999999996321 133 777999999999999999999999999999999999 99999999982
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHH---HHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC---KAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~---~l~~~gl~~~~~~~ 229 (350)
++|++|+...+...|. +|+.++... ..... +++.+ +++.+++.+.-
T Consensus 68 ------------i~~v~Q~~~~~~~tv~-----------enl~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~--- 116 (237)
T 2cbz_A 68 ------------VAYVPQQAWIQNDSLR-----------ENILFGCQL----EEPYY-RSVIQACALLPDLEILPSG--- 116 (237)
T ss_dssp ------------EEEECSSCCCCSEEHH-----------HHHHTTSCC----CTTHH-HHHHHHTTCHHHHTTSTTG---
T ss_pred ------------EEEEcCCCcCCCcCHH-----------HHhhCcccc----CHHHH-HHHHHHHhhHHHHHhcccc---
Confidence 3677777543322244 444443211 11111 11111 12233332100
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------------------CceEEEEec
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------------g~TVIiiTH 282 (350)
..+.+++++.+||||||||++||||| ||||++||+ ++|||++||
T Consensus 117 ---------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 117 ---------DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp ---------GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00124678999999999999999999 999999642 689999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+ ..||+++ +|++|++++.|++++++..
T Consensus 188 ~~~~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 188 SMSYL-PQVDVII-VMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSTTG-GGSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred ChHHH-HhCCEEE-EEeCCEEEEeCCHHHHhhc
Confidence 444 5799996 5999999999999888653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=335.00 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 48 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 48 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
.....+..|+.++++.+++.... ..+.++++||+|+|+.....++ |+|+||+|++||++||+||||||
T Consensus 995 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsG 1071 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTT
T ss_pred HHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCC
Confidence 44556777999999876653221 1246999999999974322245 56699999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 198 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~ 198 (350)
||||+++|.|+++ |++|+|.++|+++... .. ...++++++++|++..+.+ ++.+|+.++.
T Consensus 1072 KSTl~~~l~g~~~-----p~~G~I~i~g~~i~~~---~~-~~~r~~i~~v~Q~~~l~~~-----------ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1072 KSTVVQLLERFYD-----PMAGSVFLDGKEIKQL---NV-QWLRAQLGIVSQEPILFDC-----------SIAENIAYGD 1131 (1284)
T ss_dssp HHHHHHHHTTSSC-----CSEEEEESSSSCTTSS---CH-HHHTTSCEEEESSCCCCSS-----------BHHHHHTCCC
T ss_pred HHHHHHHHhcCcC-----CCCCEEEECCEEcccC---CH-HHHHhceEEECCCCccccc-----------cHHHHHhccC
Confidence 9999999999999 9999999999998621 11 1123456777777655443 4555555543
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhc
Q 018829 199 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 269 (350)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts 269 (350)
... ....+++.++++.+++.+.+.+.++++...| .+.+.+||||||||++||||| ||||+
T Consensus 1132 ~~~-----~~~~~~i~~~~~~~~~~~~i~~l~~gldt~v------ge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs 1200 (1284)
T 3g5u_A 1132 NSR-----VVSYEEIVRAAKEANIHQFIDSLPDKYNTRV------GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200 (1284)
T ss_dssp SSC-----CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBC------STTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSS
T ss_pred CCC-----CCCHHHHHHHHHHhCcHHHHHhCcccccccc------CCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 211 1112345556666666553333333333322 345678999999999999999 99999
Q ss_pred CCCC---------------CceEEEEech-HHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 270 SFRD---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 270 ~Ld~---------------g~TVIiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+||. |+|||+|||+ .....||||+ +|++|++++.|+|+++++..
T Consensus 1201 ~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~-vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1201 ALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV-VIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp SCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEE-EEETBEEEEEECHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 9873 8999999992 3345699996 59999999999999998753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=277.12 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=119.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++||++.|. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~~-----~v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g----- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLGT-----PV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG----- 99 (290)
T ss_dssp ------------CC-----CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCS-----
T ss_pred CceEEEEEEEEcCc-----eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC-----
Confidence 35799999998642 23 777999999999999999999999999999999999 9999999987
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.++|++|+...+...|.+| +. +.. .. . ..+.++++.+++.+.+.....
T Consensus 100 ------------~i~~v~Q~~~l~~~tv~en-----------l~-~~~----~~-~---~~~~~~~~~~~l~~~l~~~~~ 147 (290)
T 2bbs_A 100 ------------RISFCSQNSWIMPGTIKEN-----------II-GVS----YD-E---YRYRSVIKACQLEEDISKFAE 147 (290)
T ss_dssp ------------CEEEECSSCCCCSSBHHHH-----------HH-TTC----CC-H---HHHHHHHHHTTCHHHHHTSTT
T ss_pred ------------EEEEEeCCCccCcccHHHH-----------hh-Ccc----cc-h---HHHHHHHHHhChHHHHHhccc
Confidence 1367777765543334444 33 111 01 1 112333444454331100000
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
...+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 148 ------~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 148 ------KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp ------GGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred ------cccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 000012445689999999999999999 999999763 789999999 44
Q ss_pred HHhcccEEEEEecCCeEeecCCcccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+ ..||+++ +|++|++++.|++++++.
T Consensus 222 ~-~~~d~i~-~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 222 L-KKADKIL-ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp H-HHSSEEE-EEETTEEEEEECHHHHHH
T ss_pred H-HcCCEEE-EEECCeEEEeCCHHHHhh
Confidence 4 4699996 599999999999988864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=272.91 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=140.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++.|++- . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~~--~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~------ 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF--K-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD------ 416 (607)
T ss_dssp CEEEEECCEEEECSSC--E-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC------
T ss_pred ceEEEEeceEEEecce--E-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe------
Confidence 3579999999999642 3 777999999999999999999999999999999999 999999761
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
..++|++|+......+ |.+++...... . ....+.+.++++.+++.+
T Consensus 417 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~---------~-------~~~~~~~~~~l~~~~l~~------ 463 (607)
T 3bk7_A 417 -----------LTVAYKPQYIKAEYEGTVYELLSKIDSS---------K-------LNSNFYKTELLKPLGIID------ 463 (607)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHHH---------H-------HHCHHHHHHTHHHHTCTT------
T ss_pred -----------eEEEEEecCccCCCCCcHHHHHHhhhcc---------C-------CCHHHHHHHHHHHcCCch------
Confidence 1357788876443222 44333221000 0 011345778899999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
.+++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 464 -----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 464 -----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEecC--CeEeecCCcccccc
Q 018829 283 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 312 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 312 (350)
+.+..+|||++ +|++ |++...|++++++.
T Consensus 533 ~~~~~~adrv~-vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLI-VFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEE-EEcCCcceEEecCCHHHHHh
Confidence 57788999996 5885 78888899887754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=269.63 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=138.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++.|++ .. |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~------ 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--FR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD------ 346 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC------
T ss_pred CeEEEEeeEEEEECC--EE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC------
Confidence 457999999999964 23 677999999999999999999999999999999999 999999751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
..++|++|+....... |.+++..... . . . ...+.+.++++.+++.+
T Consensus 347 -----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~----------~-~-~----~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 347 -----------LTVAYKPQYIKADYEGTVYELLSKIDA----------S-K-L----NSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHH----------H-H-H----TCHHHHHHTTTTTTCGG------
T ss_pred -----------ceEEEEecCCcCCCCCcHHHHHHhhhc----------c-C-C----CHHHHHHHHHHHcCChh------
Confidence 1346778776443222 4332221100 0 0 0 01245677888999976
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999873 889999999
Q ss_pred hHHHhcccEEEEEecC--CeEeecCCcccccc
Q 018829 283 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 312 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 312 (350)
+.+..+|||++ +|++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~-vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLM-VFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEE-EEeCCcceEeecCCHHHHHh
Confidence 57888999996 5885 78888899887754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-31 Score=270.56 Aligned_cols=176 Identities=10% Similarity=0.054 Sum_probs=132.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++++++.|++ .. |+.+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i-- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQIL-- 332 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCE--
T ss_pred cceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeee--
Confidence 357899999999964 23 666899999999999999999999999999999999 9999999876443
Q ss_pred CccccccccCCCccceeecccccc-ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
++.+|+.... ...|.|++... ... ... .....+.++++.+++.+
T Consensus 333 --------------~~~~q~~~~~~~~tv~~~l~~~-----------~~~--~~~--~~~~~~~~~l~~~~l~~------ 377 (538)
T 3ozx_A 333 --------------SYKPQRIFPNYDGTVQQYLENA-----------SKD--ALS--TSSWFFEEVTKRLNLHR------ 377 (538)
T ss_dssp --------------EEECSSCCCCCSSBHHHHHHHH-----------CSS--TTC--TTSHHHHHTTTTTTGGG------
T ss_pred --------------EeechhcccccCCCHHHHHHHh-----------hhh--ccc--hhHHHHHHHHHHcCCHH------
Confidence 4555554322 22355544321 000 000 11234667888899887
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
.+++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 378 -----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 378 -----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp -----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEecC--CeEeecCCcc
Q 018829 283 GDLLSLTDRARIRTYL--GELLGIPPAK 308 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~--G~iv~~g~~~ 308 (350)
+.+..+||||+ +|++ |.+...+++.
T Consensus 447 ~~~~~~aDri~-vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 447 SIHDYIADRII-VFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCE
T ss_pred HHHHHhCCEEE-EEeCCcceeccCCChH
Confidence 57888999996 4875 4444444443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=261.17 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=132.4
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCC-----cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~G-----e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++|+.. ..+ ++++||++++| |+++|+||||||||||+|+|+|+++ |++|+. +.
T Consensus 350 ~~~~~~y~~~--~~~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~~-- 411 (608)
T 3j16_B 350 ASRAFSYPSL--KKT---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------IP-- 411 (608)
T ss_dssp SSSCCEECCE--EEE---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------CC--
T ss_pred cceeEEecCc--ccc---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------cc--
Confidence 6788889643 234 55599999999 7899999999999999999999999 999962 11
Q ss_pred ccccccccCCCccceeeccccccc-cchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~-~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+..+++.+|+..... ..+.+++. .... ... ...+.+.++++.+++.+
T Consensus 412 ---------~~~i~~~~q~~~~~~~~tv~e~~~-----------~~~~--~~~---~~~~~~~~~l~~l~l~~------- 459 (608)
T 3j16_B 412 ---------KLNVSMKPQKIAPKFPGTVRQLFF-----------KKIR--GQF---LNPQFQTDVVKPLRIDD------- 459 (608)
T ss_dssp ---------SCCEEEECSSCCCCCCSBHHHHHH-----------HHCS--STT---TSHHHHHHTHHHHTSTT-------
T ss_pred ---------CCcEEEecccccccCCccHHHHHH-----------HHhh--ccc---ccHHHHHHHHHHcCChh-------
Confidence 113467777644322 23444321 1000 000 11235667899999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
++++++.+||||||||++||||| ||||++||. |+|||+||| +
T Consensus 460 ----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 ----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp ----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999983 899999999 5
Q ss_pred HHHhcccEEEEEecC--CeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYL--GELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 312 (350)
.+..+||||+ +|++ |+++..|+|++++.
T Consensus 530 ~~~~~aDrvi-vl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 530 MATYLADKVI-VFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HHHHHCSEEE-ECEEETTTEEECCCCEEHHH
T ss_pred HHHHhCCEEE-EEeCCCCeEEecCChHHHhh
Confidence 7888999996 5986 89999999988865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=272.12 Aligned_cols=209 Identities=16% Similarity=0.205 Sum_probs=132.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++|+|+++. .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ...
T Consensus 669 ~~mL~v~nLs~~Y~g~~-~~i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-KPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CRI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCS-SCS---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CCE
T ss_pred CceEEEEeeEEEeCCCC-cee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cce
Confidence 45899999999996422 123 777999999999999999999999999999999999 99999999863 111
Q ss_pred Cccccccc------c---------------------CCCccceeecc----------------------------ccccc
Q 018829 152 TYFLQEYT------I---------------------PRGSNSFSLYD----------------------------TRSLS 176 (350)
Q Consensus 152 ~~~~~~~~------~---------------------~~~~~~~~~~d----------------------------~~~~~ 176 (350)
+|..|... . .+....+...+ ...+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 22222110 0 00000000000 00000
Q ss_pred -cc-hhhhhHhhH-----HHHHhhhhhhhh------------------hhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 177 -DD-ASDNINMIK-----LWIMEGVRHGEL------------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 177 -~~-v~q~~~l~~-----~~v~~~v~~~~~------------------~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.+ +.+|+.+.. .++.+|+.++.. ......+...++++.++++.+|+....
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~----- 893 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----- 893 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH-----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh-----
Confidence 00 111111100 011111111000 000000112245688899999997521
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHh
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+..
T Consensus 894 ----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 894 ----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp ----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTT
T ss_pred ----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHH
Confidence 14788999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEecCCeEeecCC
Q 018829 288 LTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~ 306 (350)
+||+++ +|++|+++..|+
T Consensus 964 l~DrVi-vL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVW-AVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEE-CCBTTBCCC---
T ss_pred hCCEEE-EEECCEEEEeCC
Confidence 999996 599999988774
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-30 Score=267.91 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=123.2
Q ss_pred CcEEE--------EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE--
Q 018829 73 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 142 (350)
Q Consensus 73 ~~l~i--------~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-- 142 (350)
.+|++ +||+++|+... .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA--FV---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCC--ee---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35788 89999996532 24 66699 999999999999999999999999999999 999985
Q ss_pred -------EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHH
Q 018829 143 -------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 215 (350)
Q Consensus 143 -------~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~ 215 (350)
.++|.++.. + .......+..+++.+|.... ...++..++.+++... ...+++.+
T Consensus 151 ~~~~~~~~~~G~~~~~-~-~~~~~~~~~~i~~~~q~~~~-------~~~~~~~tv~e~l~~~----------~~~~~~~~ 211 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQN-Y-FERLKNGEIRPVVKPQYVDL-------LPKAVKGKVRELLKKV----------DEVGKFEE 211 (607)
T ss_dssp CHHHHHHHTTTSTHHH-H-HHHHHHTSCCCEEECSCGGG-------GGGTCCSBHHHHHHHT----------CCSSCHHH
T ss_pred ccchhhheeCCEehhh-h-hhhhhhhhcceEEeechhhh-------chhhccccHHHHhhhh----------HHHHHHHH
Confidence 233432210 0 00000001122233332111 1111011333444210 01234677
Q ss_pred HHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------
Q 018829 216 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 273 (350)
Q Consensus 216 ~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------- 273 (350)
+++.+|+.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 212 ~L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 212 VVKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp HHHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 899999987 56899999999999999999999 999999974
Q ss_pred ---CceEEEEec--hHHHhcccEEEEEecCC
Q 018829 274 ---DKPVVVVTH--GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 274 ---g~TVIiiTH--~~~~~~aDri~v~l~~G 299 (350)
|+|||+||| +.+..+||||+ +|+++
T Consensus 275 ~~~g~tvIivsHdl~~~~~~adri~-vl~~~ 304 (607)
T 3bk7_A 275 ANEGKAVLVVEHDLAVLDYLSDVIH-VVYGE 304 (607)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEE-EEESC
T ss_pred HhcCCEEEEEecChHHHHhhCCEEE-EECCC
Confidence 899999999 56778999996 48754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-30 Score=263.95 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=119.3
Q ss_pred EEE-EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE---------EE
Q 018829 75 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 144 (350)
Q Consensus 75 l~i-~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I---------~i 144 (350)
.++ +||+++|+... .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA--FV---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcc--cc---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 455 69999997432 24 66699 999999999999999999999999999999 999984 23
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 145 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 145 ~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
+|.++.. ........+..+++.+|....... ++..++.+++.. ....+++.++++.+|+..
T Consensus 90 ~g~~~~~--~~~~~~~~~~~~~~~~q~~~~~~~-------~~~~~v~e~~~~----------~~~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 90 RGNELQN--YFEKLKNGEIRPVVKPQYVDLIPK-------AVKGKVIELLKK----------ADETGKLEEVVKALELEN 150 (538)
T ss_dssp TTSTHHH--HHHHHHTTSCCCEEECSCGGGSGG-------GCCSBHHHHHHH----------HCSSSCHHHHHHHTTCTT
T ss_pred CCccHHH--HHHHHHHHhhhhhhhhhhhhhcch-------hhhccHHHHHhh----------hhHHHHHHHHHHHcCCCh
Confidence 3432210 000000011122333333211110 000022233321 011234677899999987
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 279 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIi 279 (350)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 151 -----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 151 -----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp -----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999 999999974 899999
Q ss_pred Eec--hHHHhcccEEEEEecCC
Q 018829 280 VTH--GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G 299 (350)
||| +.+..+||||+ +|++|
T Consensus 214 vsHd~~~~~~~~dri~-vl~~~ 234 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIH-VVYGE 234 (538)
T ss_dssp ECSCHHHHHHHCSEEE-EEEEE
T ss_pred EeCCHHHHHHhCCEEE-EEcCc
Confidence 999 57778999996 48754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-29 Score=259.92 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=110.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHH---------------------HHHHhccCCCCCCCccc-------EEEECCE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASERA-------QVTYNSS 147 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl---------------------~~I~gl~~~~~~~p~~G-------~I~i~G~ 147 (350)
|+||||+|++||++||+||||||||||+ +++.|+.. |+.| .|.+++.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 6669999999999999999999999998 88888888 7744 4555554
Q ss_pred eCCCCccccccccCCCccceeecccccc------ccchh--hhhHhhH-HHHHhhhhhhhhhh-cCCCcHHHH------H
Q 018829 148 VGDGTYFLQEYTIPRGSNSFSLYDTRSL------SDDAS--DNINMIK-LWIMEGVRHGELVI-RRSDSSSLR------N 211 (350)
Q Consensus 148 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~v~--q~~~l~~-~~v~~~v~~~~~~~-~~~~~~~~~------~ 211 (350)
+.. ...+..+++++|....+ .+.++ ++...+. .++.+|+.+..... ........+ .
T Consensus 109 ~~~--------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (670)
T 3ux8_A 109 TTS--------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIR 180 (670)
T ss_dssp C-------------CCBHHHHTTCC-------------------------CC--------------------------CH
T ss_pred hhh--------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH
Confidence 332 11122334444432211 01111 1111111 24455554421100 000000000 1
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC-------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~------- 273 (350)
....+++.+|+.+. .+++++.+||||||||++||||| ||||++||+
T Consensus 181 ~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 181 DRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 244 (670)
T ss_dssp HHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH
Confidence 12245888999763 24789999999999999999998 999999974
Q ss_pred ---------CceEEEEech-HHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 ---------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 ---------g~TVIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|+|||+|||+ .....||+++ +| ++|++++.|++++++..+.
T Consensus 245 ~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii-~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 245 ATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHCSEEE-EECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHhhCCEEE-EecccccccCCEEEEecCHHHHhcCch
Confidence 8999999992 3445699996 58 8999999999999987654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=247.93 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC-----
Q 018829 211 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 273 (350)
Q Consensus 211 ~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~----- 273 (350)
+++.+++..+++... .+++++.+||||||||++||||| ||||++||+
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 456677888998652 24789999999999999999998 999999974
Q ss_pred -----------CceEEEEech-HHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 -----------g~TVIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|+|||+|||+ .....||||+ +| ++|+|++.|+++++...+. .++..++.
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~-~l~~~~g~~~G~i~~~g~~~~~~~~~~-~~~~~~~~ 651 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 651 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEECHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEecCHHHHHhCCc-cHHHHHHH
Confidence 8999999992 3456799996 59 8999999999999976543 44455544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-28 Score=251.33 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=114.3
Q ss_pred EEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcccccc
Q 018829 79 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 158 (350)
Q Consensus 79 ~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 158 (350)
|++++|+..... |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|..... . ....
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~--~----~~~~ 144 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPE--W----QEII 144 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSC--H----HHHH
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccc--h----hhhh
Confidence 568889755433 44466 589999999999999999999999999999 99998731110 0 0000
Q ss_pred -ccCCCccceeecccc-----cccc--chhhhhHhhHH-------HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC
Q 018829 159 -TIPRGSNSFSLYDTR-----SLSD--DASDNINMIKL-------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 159 -~~~~~~~~~~~~d~~-----~~~~--~v~q~~~l~~~-------~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
.+. +..++... .... +..|.....+. ++.+++.. . .....+++.++++.+|+.
T Consensus 145 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~----~~~~~~~~~~~l~~~gl~ 212 (608)
T 3j16_B 145 KYFR----GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----R----MEKSPEDVKRYIKILQLE 212 (608)
T ss_dssp HHTT----TSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----H----CCSCHHHHHHHHHHHTCT
T ss_pred heec----ChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----h----hhhHHHHHHHHHHHcCCc
Confidence 000 00000000 0000 00011110110 11111110 0 011235688899999998
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEE
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 278 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVI 278 (350)
+ .+++++.+||||||||++||||| ||||++||. |+|||
T Consensus 213 ~-----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 213 N-----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp G-----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred c-----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 7 56999999999999999999999 999999873 89999
Q ss_pred EEec--hHHHhcccEEEEEecCCe
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGE 300 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~ 300 (350)
+||| +.+..+||||+ +|++|.
T Consensus 276 ~vtHdl~~~~~~~drv~-vl~~~~ 298 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFVC-IIYGVP 298 (608)
T ss_dssp EECSCHHHHHHHCSEEE-EEESCT
T ss_pred EEeCCHHHHHHhCCEEE-EEeCCc
Confidence 9999 67888999996 488765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=249.55 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=126.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.+...|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+...
T Consensus 435 ~L~~~~ls~~yg~---~~i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-- 493 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KIL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-- 493 (986)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT--
T ss_pred eeEEeeEEEEECC---EEe---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCcccc--
Confidence 4677799999964 234 777999999999999999999999999999995 111 2222110
Q ss_pred cccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~-~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ..+.|++|+. ..+..+ ++.+++.+ . ... . ++++.++++.+|+...
T Consensus 494 -----~---~~~~~v~q~~~~~~~~l----------tv~e~l~~--~-~~~---~--~~~v~~~L~~lgL~~~------- 540 (986)
T 2iw3_A 494 -----E---CRTVYVEHDIDGTHSDT----------SVLDFVFE--S-GVG---T--KEAIKDKLIEFGFTDE------- 540 (986)
T ss_dssp -----T---SCEEETTCCCCCCCTTS----------BHHHHHHT--T-CSS---C--HHHHHHHHHHTTCCHH-------
T ss_pred -----c---eeEEEEcccccccccCC----------cHHHHHHH--h-hcC---H--HHHHHHHHHHcCCChh-------
Confidence 0 0123444432 111111 23344432 1 001 1 5678889999999632
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHhc
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~~ 288 (350)
..++++.+||||||||++||||| ||||++||. |.|||+||| +.+..+
T Consensus 541 ---------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 541 ---------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611 (986)
T ss_dssp ---------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 45889999999999999999999 999999984 899999999 577889
Q ss_pred ccEEEEEecCCeEe-ecCCcccccc
Q 018829 289 TDRARIRTYLGELL-GIPPAKQIFD 312 (350)
Q Consensus 289 aDri~v~l~~G~iv-~~g~~~~l~~ 312 (350)
||+++ +|++|+++ ..|++++++.
T Consensus 612 adrii-~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 612 CEYII-NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEE-EEETTEEEEEESCHHHHHH
T ss_pred CCEEE-EEECCeeecCCCCHHHHHh
Confidence 99996 59999997 5788877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-27 Score=245.32 Aligned_cols=174 Identities=16% Similarity=0.117 Sum_probs=114.8
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEe-CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE-----------EEC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 145 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~-~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-----------~i~ 145 (350)
++.+.+|+.+.. +-..|.++ +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~f-------~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNGF-------KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTSC-------EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCce-------eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 357889986653 33455555 899999999999999999999999999 999988 455
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 146 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 146 G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
|.++.. + .+........+....+ ++.+...++..++.+++.. ...++++.++++.+++..
T Consensus 71 g~~i~~-~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~l~~----------~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN-Y-FKELYSNELKIVHKIQ-------YVEYASKFLKGTVNEILTK----------IDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH-H-HHHHHTTCCCEEEECS-------CTTGGGTTCCSBHHHHHHH----------HCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH-H-HHHHhhcccchhhccc-------hhhhhhhhccCcHHHHhhc----------chhHHHHHHHHHHcCCch-
Confidence 544320 0 0000000000011111 1111111111111121110 011234667889999987
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEe
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 281 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiT 281 (350)
..++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999 999999873 89999999
Q ss_pred c--hHHHhcccEEEEEecCCe
Q 018829 282 H--GDLLSLTDRARIRTYLGE 300 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~ 300 (350)
| +.+..+||+|+ +|++|.
T Consensus 195 Hdl~~~~~~~d~i~-vl~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIH-IIYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEE-EEEEET
T ss_pred eChHHHHhhCCEEE-EecCCc
Confidence 9 67788999996 487653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=238.13 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC----
Q 018829 210 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD---- 273 (350)
Q Consensus 210 ~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~---- 273 (350)
..++.++|+.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 782 ~~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~ 845 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVR 845 (916)
T ss_dssp HHHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHH
Confidence 3566788999999752 24789999999999999999998 999999873
Q ss_pred ------------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 ------------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| -.+.+.||+|+ +| ++|+|++.|++++++..+ .+++..++.
T Consensus 846 ~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi-vLgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l~ 913 (916)
T 3pih_A 846 KLVEVLHRLVDRGNTVIVIEHNLDVIKNADHII-DLGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFLK 913 (916)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHHH
Confidence 899999999 34456699996 59 899999999999999876 567766653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=233.02 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC-----
Q 018829 211 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 273 (350)
Q Consensus 211 ~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~----- 273 (350)
+++.++++.+||... .+++.+.+||||||||++|||+| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----------------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 467889999999762 14788999999999999999998 999999873
Q ss_pred -----------CceEEEEec--hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 -----------g~TVIiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| +.+ ..||+|+ +| ++|+|++.|++++++..+. .++..++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii-~L~p~~g~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 838 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVL-DIGPGAGEDGGRLVAQGTPAEVAQAAG-SVTAPYLR 838 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE-EECSSSGGGCCSEEEEECHHHHTTCTT-CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE-EECCCCCCCCCEEEEEcCHHHHHhCch-hHHHHHHH
Confidence 899999999 455 7899996 59 7999999999999988765 35555543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-28 Score=245.88 Aligned_cols=177 Identities=11% Similarity=-0.024 Sum_probs=129.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-E-EEECCEeC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 149 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~-I~i~G~~i 149 (350)
.++++++||+++|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |.++| +.
T Consensus 116 ~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg-~~ 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINL-DP 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEEC-CT
T ss_pred cchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcC-Cc
Confidence 56789999998884 2 899999999999999999999999999999999 9999 9 99987 21
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
++.+++++|+...+... . ..++.+|+ ++........ ..+++.++++.+|+.+
T Consensus 178 ------------~~~i~~vpq~~~l~~~~--~-----~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~----- 229 (460)
T 2npi_A 178 ------------QQPIFTVPGCISATPIS--D-----ILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLER----- 229 (460)
T ss_dssp ------------TSCSSSCSSCCEEEECC--S-----CCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSS-----
T ss_pred ------------cCCeeeeccchhhcccc--c-----ccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCc-----
Confidence 23456777765432100 0 00122333 2221100100 1123445677788876
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHH--h-------------ch-hhcCCCC------------CceEEEEe
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKPVVVVT 281 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA--L-------------DE-Pts~Ld~------------g~TVIiiT 281 (350)
..+ +.+||||||||++|||| | || |+++||. ++|+|+||
T Consensus 230 ------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVt 295 (460)
T 2npi_A 230 ------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVL 295 (460)
T ss_dssp ------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEE
T ss_pred ------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEE
Confidence 333 88999999999999999 4 99 9999874 88999999
Q ss_pred c--h------HHHhcccE-----EEEEec-CCeEeecCCcccc
Q 018829 282 H--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 310 (350)
Q Consensus 282 H--~------~~~~~aDr-----i~v~l~-~G~iv~~g~~~~l 310 (350)
| + .+..+||| |+ +|+ +|+++ .|+++++
T Consensus 296 h~~~~~l~~~~~~~~~dr~~~~~vi-~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 296 CSETDPLWEKVKKTFGPELGNNNIF-FIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCSSCTHHHHHHHHHHHHHCGGGEE-EECCCTTCC-CCCHHHH
T ss_pred ccCchhhhHHHHHHhcccccCCEEE-EEeCCCcEE-ECCHHHH
Confidence 9 5 55689999 95 598 99999 8887654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=223.08 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~------ 273 (350)
++.++++.+||... .+++.+.+||||||||++|||+| ||||++||.
T Consensus 824 ~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 887 (972)
T 2r6f_A 824 RKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL 887 (972)
T ss_dssp HHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 45678999999762 24789999999999999999998 999999873
Q ss_pred ----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 ----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| -.....||+|+ +| ++|++++.|++++++..+. .++..++.
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi-vL~p~gG~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 953 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 953 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EECSSSTTSCCSEEEEESHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE-EEcCCCCCCCCEEEEecCHHHHHhCch-hHHHHHHH
Confidence 899999999 23446899996 59 7899999999999987654 44444443
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=199.14 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHh-----------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEe----cC
Q 018829 250 SDVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT----YL 298 (350)
Q Consensus 250 LSGGqrQRvaIArAL-----------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l----~~ 298 (350)
||||||||++||++| ||||++||. +.|||+||| ..+...||+++ +| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~-~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY-KVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEE-EEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEE-EEEEeccC
Confidence 699999999999998 999999873 799999999 45557899996 59 89
Q ss_pred CeEeec
Q 018829 299 GELLGI 304 (350)
Q Consensus 299 G~iv~~ 304 (350)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998765
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-25 Score=214.60 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHccchhcccCC------CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 45 DSLVDQRRRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
..+.....+..|+.++++.+.+..... ..+|+++||+|+|+ . ++ |+++||+|++|++++|+||||||
T Consensus 66 ~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~--~v---L~~vsl~i~~Ge~vaIvGpsGsG 138 (305)
T 2v9p_A 66 RHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--I--NA---LKLWLKGIPKKNCLAFIGPPNTG 138 (305)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--H--HH---HHHHHHTCTTCSEEEEECSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--h--hh---hccceEEecCCCEEEEECCCCCc
Confidence 334444455569999998765532221 12589999999996 2 24 77799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHh-hhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME-GVRHG 197 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~-~v~~~ 197 (350)
||||+++|+|++. |+|.. ++.|+...+.+ ++.+ |+.++
T Consensus 139 KSTLl~lL~gl~~--------G~I~~----------------------~v~q~~~lf~~-----------ti~~~ni~~~ 177 (305)
T 2v9p_A 139 KSMLCNSLIHFLG--------GSVLS----------------------FANHKSHFWLA-----------SLADTRAALV 177 (305)
T ss_dssp HHHHHHHHHHHHT--------CEEEC----------------------GGGTTSGGGGG-----------GGTTCSCEEE
T ss_pred HHHHHHHHhhhcC--------ceEEE----------------------EecCccccccc-----------cHHHHhhccC
Confidence 9999999999983 88842 22222222222 2222 44432
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--chh---hcCCC
Q 018829 198 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---YLSFR 272 (350)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEP---ts~Ld 272 (350)
.. .. . .+.+.++.+ +.. .++ +..|||||||| |||| +.| |++||
T Consensus 178 ~~----~~-~----~~~~~i~~~-L~~-----------------gld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD 225 (305)
T 2v9p_A 178 DD----AT-H----ACWRYFDTY-LRN-----------------ALD--GYPVSIDRKHK---AAVQIKAPPLLVTSNID 225 (305)
T ss_dssp EE----EC-H----HHHHHHHHT-TTG-----------------GGG--TCCEECCCSSC---CCCEECCCCEEEEESSC
T ss_pred cc----cc-H----HHHHHHHHH-hHc-----------------cCC--ccCcCHHHHHH---HHHHhCCCCEEEECCCC
Confidence 11 00 1 334445543 443 123 77999999999 9998 444 88888
Q ss_pred C--CceEEEEec-hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 273 D--DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 273 ~--g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
. ...+..+|| ..+...||+| + |++|++++.|+++++
T Consensus 226 ~~~~~~i~~ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 226 VQAEDRYLYLHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp STTCGGGGGGTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 4 223334589 3456789999 7 999999999999876
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-19 Score=171.62 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=48.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEE-
Q 018829 243 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA- 292 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri- 292 (350)
.+..+..||+|||||++||+|| ||||++||+ +.|||++|| ..+...||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~ 292 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH 292 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEE
Confidence 4567789999999999999975 999999874 789999999 4567789986
Q ss_pred EEEecCCeE
Q 018829 293 RIRTYLGEL 301 (350)
Q Consensus 293 ~v~l~~G~i 301 (350)
.++|.+|..
T Consensus 293 ~v~~~~g~s 301 (322)
T 1e69_A 293 GVTMVNGVS 301 (322)
T ss_dssp EEEESSSCE
T ss_pred EEEEeCCEE
Confidence 234777754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-20 Score=160.24 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=28.1
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
++||++++||+++|+||||||||||+|++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 499999999999999999999999999854
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=171.01 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=51.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHh---------------chhhcCCCC----------------CceEEEEec-hHHHhcccE
Q 018829 244 KSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIArAL---------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDr 291 (350)
++++.+||||||||++||||| ||||++||+ |+|||+||| -.....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 678889999999999999886 999999874 799999999 344678999
Q ss_pred EEEEecCCeEee
Q 018829 292 ARIRTYLGELLG 303 (350)
Q Consensus 292 i~v~l~~G~iv~ 303 (350)
++ +|++|++++
T Consensus 354 ~~-~l~~G~i~~ 364 (365)
T 3qf7_A 354 KL-RITGGVVVN 364 (365)
T ss_dssp EE-EEETTEEC-
T ss_pred EE-EEECCEEEe
Confidence 96 599999975
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-21 Score=195.21 Aligned_cols=183 Identities=12% Similarity=0.090 Sum_probs=121.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE---eC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VG 149 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i 149 (350)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|+ ++
T Consensus 130 ~~l~~~~v~~~~~tg--~~v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRA---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHH---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCC--ceE---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHH
Confidence 578999999999633 345 6669 9999999999999999999999999999999 99999999997 33
Q ss_pred CCCccccc---cccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 150 DGTYFLQE---YTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 150 ~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
.. .... ....++.+++++|+. ..++. .++.+|+.+... .....+ .
T Consensus 199 ~~--~~~~~~~~~~l~r~i~~v~q~~----------~~~~~~~~v~~~~~~~ae----------------~~~~~~--~- 247 (438)
T 2dpy_A 199 KD--FIENILGPDGRARSVVIAAPAD----------VSPLLRMQGAAYATRIAE----------------DFRDRG--Q- 247 (438)
T ss_dssp HH--HHHTTTHHHHHHTEEEEEECTT----------SCHHHHHHHHHHHHHHHH----------------HHHTTT--C-
T ss_pred HH--HHHhhccccccCceEEEEECCC----------CCHHHHHHHHHHHHHHHH----------------HHHhCC--C-
Confidence 20 0000 000112334444421 11122 244444442211 111101 1
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHhchh--hcCCCC--------------------Cc-----eEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVV 278 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP--ts~Ld~--------------------g~-----TVI 278 (350)
+ |..++|. ...||+|| ||++|| +.+| +++||+ |+ ||+
T Consensus 248 -----~-v~~~ld~-------l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVl 311 (438)
T 2dpy_A 248 -----H-VLLIMDS-------LTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVL 311 (438)
T ss_dssp -----E-EEEEEEC-------HHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEE
T ss_pred -----C-HHHHHHh-------HHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEE
Confidence 1 1122222 44689999 999999 6566 666542 32 899
Q ss_pred EEechHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 279 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 279 iiTH~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
++||+....+||+++ +|.+|+|+..+++.++...|
T Consensus 312 v~tHdl~~~iad~v~-~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 312 TEGDDQQDPIADSAR-AILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp CSSSCSCCHHHHHHH-HHSSEEEEECHHHHHTTCSS
T ss_pred EeCCCccchhhceEE-EEeCcEEEEeCCHHHccCCC
Confidence 999953377899995 59999999999998887654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-20 Score=175.76 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=105.3
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc-cccccC-CCccceeeccccc
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL-QEYTIP-RGSNSFSLYDTRS 174 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~-~~~~~~-~~~~~~~~~d~~~ 174 (350)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...... +...+. +..+++++|+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~--- 162 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--- 162 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec---
Confidence 34899999999999999999999999999999999 9999999999886421000 000010 1123444443
Q ss_pred cccchhhhhH-hhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCH
Q 018829 175 LSDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 252 (350)
Q Consensus 175 ~~~~v~q~~~-l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 252 (350)
.. +.+. ++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 163 --------~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~-----------------~~~~~~~eLS- 206 (302)
T 3b9q_A 163 --------GDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI- 206 (302)
T ss_dssp ----------CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSS-----------------CCHHHHHHHH-
T ss_pred --------CCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCc-----------------chhHHHHHHH-
Confidence 33 2222 556666543221 000 12345566655 2366777899
Q ss_pred HHHHHHHHHHHh-----------chhhcCCCC-----------CceEEEEec-h----------HHHhcccEEEEEecCC
Q 018829 253 EKQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLG 299 (350)
Q Consensus 253 GqrQRvaIArAL-----------DEPts~Ld~-----------g~TVIiiTH-~----------~~~~~aDri~v~l~~G 299 (350)
+||++||||| | ||+++|. +.|+|++|| + .+...++.|. ++..|
T Consensus 207 --kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~-~i~~G 282 (302)
T 3b9q_A 207 --ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVG 282 (302)
T ss_dssp --HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEE-EEECS
T ss_pred --HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEE-EEeCC
Confidence 9999999998 8 9999863 899999999 3 2234566775 48888
Q ss_pred eEe
Q 018829 300 ELL 302 (350)
Q Consensus 300 ~iv 302 (350)
+.+
T Consensus 283 e~~ 285 (302)
T 3b9q_A 283 EAV 285 (302)
T ss_dssp SSG
T ss_pred CCh
Confidence 653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-20 Score=183.75 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=98.6
Q ss_pred CeeEeEEEeCCc--------------------EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 96 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 96 L~~is~~I~~Ge--------------------~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+.+.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----C----
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecce----
Confidence 666999999999 999999999999999999999999 999999999876530
Q ss_pred cccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.+++++.. .+..+ +.+++.+ +.. +..+.++++.+++.+.
T Consensus 110 ---------~~~v~q~~-~~~~ltv~D~~g~-----------~~~----------~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 110 ---------ERHPYKHP-NIPNVVFWDLPGI-----------GST----------NFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp ---------CCEEEECS-SCTTEEEEECCCG-----------GGS----------SCCHHHHHHHTTGGGC---------
T ss_pred ---------eEEecccc-ccCCeeehHhhcc-----------cch----------HHHHHHHHHHcCCCcc---------
Confidence 13455542 12122 3333322 110 1235677888887651
Q ss_pred eecchhhhhccCCCCCCHH--HHHHHHHHHHh-------------------chhhcCCCC--------------------
Q 018829 235 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 273 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGG--qrQRvaIArAL-------------------DEPts~Ld~-------------------- 273 (350)
+..+. ||+| |+||++||+|| ||||++||+
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 9999 99999999997 999999764
Q ss_pred -C----ceEEEEec--h--HHHhcccEE
Q 018829 274 -D----KPVVVVTH--G--DLLSLTDRA 292 (350)
Q Consensus 274 -g----~TVIiiTH--~--~~~~~aDri 292 (350)
| .+|+++|| . .+..+||++
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 1 45778898 3 378888888
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-20 Score=167.41 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=32.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 143 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~ 143 (350)
++||+++|+||||||||||+++|+|+ + |++|+|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~ 53 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS 53 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee
Confidence 89999999999999999999999999 9 9999994
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-20 Score=167.64 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=32.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~ 57 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSC 57 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecc
Confidence 77799999999999999999999999999999977 4 88998 7654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-19 Score=159.78 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.| .+|++||+++|+||||||||||+|+|+|+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 555 6999999999999999999999999999986
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-19 Score=170.13 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=73.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccc-hhhhhHhh
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMI 186 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~ 186 (350)
.++|+||||||||||+|+|+|+.. |++|+|.++|.++.. ...++.+++++|+...+..+ |.+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~-------~~~~~~i~~v~q~~~~~~~ltv~d~~~-- 69 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK-------TVEIKAIGHVIEEGGVKMKLTVIDTPG-- 69 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-------CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc-------ceeeeeeEEEeecCCCcCCceEEechh--
Confidence 589999999999999999999999 999999999987641 12233567777765554443 444443
Q ss_pred HHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--
Q 018829 187 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 264 (350)
Q Consensus 187 ~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-- 264 (350)
++..... ....+.+.+++. .. +.+.++.+||||||||+++|||+
T Consensus 70 ---------~g~~~~~----~~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 70 ---------FGDQINN----ENCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp -----------CCSBC----TTCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred ---------hhhhccc----HHHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 3322111 111122223222 11 34566778999999999999997
Q ss_pred ----chhhcCCCC-----------CceEEEEec
Q 018829 265 ----NCPYLSFRD-----------DKPVVVVTH 282 (350)
Q Consensus 265 ----DEPts~Ld~-----------g~TVIiiTH 282 (350)
|||+.+|++ ..+||+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 999999763 577887777
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-20 Score=179.14 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=114.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.. |+.|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~tg--~~a---ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~-- 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRA---IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGR-- 110 (347)
T ss_dssp CSTTCCCCCSEECCS--CHH---HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH--
T ss_pred CCeeecccceecCCC--CEE---EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHH--
Confidence 568999999999743 345 5559 9999999999999999999999999999999 99999999886421
Q ss_pred ccccccccCCCccceeeccc--cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDT--RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~--~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
+ +.. .+++ +... .....++.+...... ..+.. ....-.+.+.+...+ .
T Consensus 111 ----e--v~~-~i~~-~~~~~~~~~v~~~~~~~~~~~----~r~~~----------~~~~~~~ae~~~~~~--~------ 160 (347)
T 2obl_A 111 ----E--VNE-FLAL-LPQSTLSKCVLVVTTSDRPAL----ERMKA----------AFTATTIAEYFRDQG--K------ 160 (347)
T ss_dssp ----H--HHH-HHTT-SCHHHHTTEEEEEECTTSCHH----HHHHH----------HHHHHHHHHHHHTTT--C------
T ss_pred ----H--HHH-HHHh-hhhhhhhceEEEEECCCCCHH----HHHHH----------HHHHHHHHHHHHhcc--c------
Confidence 0 000 0000 0000 000001111100000 00000 000000111111111 1
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHhchh-hcCCCC------------------Cc-----eEEEEechHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRD------------------DK-----PVVVVTHGDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP-ts~Ld~------------------g~-----TVIiiTH~~~~ 286 (350)
+ |..++ ..+..||+|| ||+++| +-+.| ++++|+ |. ||+++||+.-.
T Consensus 161 ~-vl~~l-------d~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 161 N-VLLMM-------DSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp E-EEEEE-------ETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC
T ss_pred c-HHHHH-------hhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC
Confidence 1 11222 3456899999 899999 33555 466542 55 89999995337
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
.+||++. +|.+|+|+..++..++...|.
T Consensus 231 ~i~d~v~-~i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 231 PIGDEVR-SILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp HHHHHHH-HHCSEEEEBCHHHHTTTCSSC
T ss_pred hhhhheE-EeeCcEEEEeCCHHHcCCCCC
Confidence 7899996 599999999999888766553
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-19 Score=171.66 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=104.6
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc-cccccc-CCCccceeecccc-c
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF-LQEYTI-PRGSNSFSLYDTR-S 174 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~-~~~~~~-~~~~~~~~~~d~~-~ 174 (350)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.|+..... .|...+ .+..+++++|+.. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 223 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc
Confidence 4899999999999999999999999999999999 999999999988642100 000011 0123445544432 1
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
+ ...++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 224 ~----------p~~tv~e~l~~~~~~--~~d--------~~lldt~Gl~~-----------------~~~~~~~eLS--- 263 (359)
T 2og2_A 224 K----------AATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI--- 263 (359)
T ss_dssp C----------HHHHHHHHHHHHHHT--TCS--------EEEEECCCCSS-----------------CCHHHHHHHH---
T ss_pred C----------hhhhHHHHHHHHHhC--CCH--------HHHHHhcCCCh-----------------hhhhHHHHHH---
Confidence 1 122555666543221 000 12344566655 2356777899
Q ss_pred HHHHHHHHHh-----------chhhcCCCC-----------CceEEEEec-h----------HHHhcccEEEEEecCCeE
Q 018829 255 QYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 255 rQRvaIArAL-----------DEPts~Ld~-----------g~TVIiiTH-~----------~~~~~aDri~v~l~~G~i 301 (350)
+||++||||| | ||+++|. +.|+|++|| + .+...+..|. ++..|+.
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~-~ig~Ge~ 341 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGEA 341 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEE-EEECSSS
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEE-EEeCCCC
Confidence 9999999998 8 9999863 899999999 3 2234566784 4777764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=166.46 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC-----
Q 018829 210 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----- 273 (350)
Q Consensus 210 ~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~----- 273 (350)
.+++. .+..+|+... .+++.+.+|||||+||++||+|| ||||++|++
T Consensus 357 ~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp HHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred HHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 34444 5778888752 14889999999999999999999 999999963
Q ss_pred -----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 -----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 -----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|.|||+|+| -.+...||+|+ +| ++|+++..|+++++...+.
T Consensus 420 L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii-~lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 420 LLSALENLKRGGNSLFVVEHDLDVIRRADWLV-DVGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHTTCSEEE-EECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE-EeCCCcccCCCEEEEecCHHHHHhchH
Confidence 899999999 34556899996 59 7999999999999987654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-20 Score=179.09 Aligned_cols=172 Identities=11% Similarity=-0.068 Sum_probs=111.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEE-----------------------EeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~-----------------------I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
...|++++|++.|.+ . +++++|. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~p---~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP---L-----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhhh---H-----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 346899999999952 2 3445553 89999999999999999999999999
Q ss_pred ccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHH
Q 018829 129 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 208 (350)
Q Consensus 129 l~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~ 208 (350)
+++ |..|. ..+++++|+...+ +.++.+|+.+... ...+...
T Consensus 113 ll~-----~~~G~---------------------~~v~~v~qd~~~~-----------~~t~~e~~~~~~~--~g~~~~~ 153 (312)
T 3aez_A 113 LLA-----RWDHH---------------------PRVDLVTTDGFLY-----------PNAELQRRNLMHR--KGFPESY 153 (312)
T ss_dssp HHH-----TSTTC---------------------CCEEEEEGGGGBC-----------CHHHHHHTTCTTC--TTSGGGB
T ss_pred hcc-----ccCCC---------------------CeEEEEecCccCC-----------cccHHHHHHHHHh--cCCChHH
Confidence 999 86553 0235666654332 2244455443110 1112223
Q ss_pred HHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC---C---
Q 018829 209 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D--- 273 (350)
Q Consensus 209 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld---~--- 273 (350)
..+.+.++++.++ ... .+..+..|||||+||+++|+|+ |||++.++ .
T Consensus 154 d~~~~~~~L~~l~-~~~-----------------~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~ 215 (312)
T 3aez_A 154 NRRALMRFVTSVK-SGS-----------------DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVS 215 (312)
T ss_dssp CHHHHHHHHHHHH-TTC-----------------SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGG
T ss_pred HHHHHHHHHHHhC-CCc-----------------ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHH
Confidence 3456667777777 431 2456679999999999999998 99999874 1
Q ss_pred ---CceEEEEec--h-HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 274 ---DKPVVVVTH--G-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 274 ---g~TVIiiTH--~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+ |+|+| + ...+..+|.. .+.+++ ..+++.++.+
T Consensus 216 ~~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~---~r~~~~~~~~ 256 (312)
T 3aez_A 216 DLFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA---FADPESHFHH 256 (312)
T ss_dssp GGCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG---GGSTTSTTGG
T ss_pred HhcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc---ccCcchhhhc
Confidence 444 55566 3 3345677773 355654 2344455543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-20 Score=187.01 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=51.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeE-EEeCCcEEEEEcCCCChHHHHHHH--HHhccCCCCCCCcccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~-~I~~Ge~iaIvGpnGsGKSTLl~~--I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+++.+++.+ |..+ +++ |+++|| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+
T Consensus 12 ~~~~~~~~~-~~~g--~~~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~ 78 (525)
T 1tf7_A 12 NSEHQAIAK-MRTM--IEG---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEE 78 (525)
T ss_dssp --CCSSCCE-ECCC--CTT---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred Ccccccccc-ccCC--chh---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 455566644 4433 345 666999 999999999999999999999999 789999 999999999876
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-17 Score=147.44 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=40.6
Q ss_pred hccCCCCCCHHHHHHHHHHHH-----h---------ch--hhcCCCC-------------CceEEEEec-----hHHHhc
Q 018829 243 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-----GDLLSL 288 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArA-----L---------DE--Pts~Ld~-------------g~TVIiiTH-----~~~~~~ 288 (350)
.++++..||||||||++|||| + || |++++|+ +.|+|++|| ..+..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 477888999999999999996 6 99 9999763 667999996 466677
Q ss_pred ccE
Q 018829 289 TDR 291 (350)
Q Consensus 289 aDr 291 (350)
|+|
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 776
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=145.23 Aligned_cols=62 Identities=8% Similarity=-0.055 Sum_probs=54.1
Q ss_pred cCCC-CCCHHHHHHHHHHHHh------------------chhhcCCCC-------------CceEEEEec-hHHHhcccE
Q 018829 245 SMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 245 ~~~~-~LSGGqrQRvaIArAL------------------DEPts~Ld~-------------g~TVIiiTH-~~~~~~aDr 291 (350)
+.+. .||||||||++||++| |||+++||+ +.|+|++|| +. .||+
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~---~~~~ 336 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP---GAAL 336 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT---TCSE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc---cCCE
Confidence 4455 6999999999999998 999999984 579999999 43 8999
Q ss_pred EEEEecCCeEeecCCcccc
Q 018829 292 ARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 292 i~v~l~~G~iv~~g~~~~l 310 (350)
++ +|++|+++..|+++++
T Consensus 337 i~-~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TL-RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EE-EEETTEEEECCCTTTS
T ss_pred EE-EEECCEEEecCCHHHH
Confidence 95 5999999999999877
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-17 Score=161.07 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=44.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++||++++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCee
Confidence 556999999999999999999999999999999999 999999998743
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-15 Score=143.26 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=41.6
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G 146 (350)
|+++++.+++|++++|+||||||||||+++|+|.+. |++| .|.+.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~ 71 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAM 71 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEe
Confidence 777999999999999999999999999999999998 8878 676543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-15 Score=159.16 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=75.9
Q ss_pred HHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC--------
Q 018829 213 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-------- 273 (350)
Q Consensus 213 i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~-------- 273 (350)
..++|..+|+... .+++.+.+||||||||++||||| ||||++||+
T Consensus 444 ~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 444 RLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp HHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 4567888999752 14789999999999999999999 999999874
Q ss_pred --------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHH
Q 018829 274 --------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 274 --------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
|.|||+||| ..+...||+|+ +| ++|++++.|++++++..+..+.+..
T Consensus 508 ~L~~L~~~G~TvivVtHd~~~~~~aD~ii-~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~ 569 (916)
T 3pih_A 508 TLKKLRDLGNTVIVVEHDEEVIRNADHII-DIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGE 569 (916)
T ss_dssp HHHHTTTTTCEEEEECCCHHHHHTCSEEE-EEESSSGGGCSEEEEEECHHHHHHSCTTCHHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EEcCCcccCCCEEEEeechhhhhcCchhcchhh
Confidence 899999999 34445699996 59 9999999999999988776554433
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-15 Score=165.25 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCcEEEEE-----EEEEECCCceEEecCCCeeEeEEEeC-------CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 72 GSLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 72 ~~~l~i~~-----l~~~y~~~~~~~~l~~L~~is~~I~~-------Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|++++ |++.|.++..+ ++|++|++++ |++++|+||||||||||+|+| |++.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 35799999 99999433334 7779999987 999999999999999999999 9987
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=131.75 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=44.5
Q ss_pred hhccCCCCCCHHHHHH------HHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhcc
Q 018829 242 VLKSMEGDSDVEKQYN------QIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 289 (350)
Q Consensus 242 ~~~~~~~~LSGGqrQR------vaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~a 289 (350)
..++++.+|||||||| +++|+|| ||||++||+ +.|||+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 3477889999999994 5666666 999999874 679999999 5667889
Q ss_pred cEEEEEec
Q 018829 290 DRARIRTY 297 (350)
Q Consensus 290 Dri~v~l~ 297 (350)
|++++ |.
T Consensus 321 d~~~~-l~ 327 (339)
T 3qkt_A 321 DHVIR-IS 327 (339)
T ss_dssp SEEEE-EE
T ss_pred CEEEE-EE
Confidence 99954 64
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=147.55 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=86.4
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccE-E-EECCEeCCCCccccccccCCCccceeecccccccc
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ-V-TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 177 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~-I-~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 177 (350)
+..|++|++++|+||||||||||+++|+|+.. +. |+ + .+ .+++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~-----------------------~~ee~~~--- 322 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILF-----------------------AYEESRA--- 322 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEE-----------------------ESSSCHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEE-----------------------EEeCCHH---
Confidence 34899999999999999999999999999998 64 53 2 22 2222110
Q ss_pred chhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHH
Q 018829 178 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 257 (350)
Q Consensus 178 ~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 257 (350)
.+.... . .++ .+ . .+ +...|+.. +.+.+|.+|||||+||
T Consensus 323 ------~l~~~~--~--~~g------~~---~----~~-~~~~g~~~-----------------~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 323 ------QLLRNA--Y--SWG------MD---F----EE-MERQNLLK-----------------IVCAYPESAGLEDHLQ 361 (525)
T ss_dssp ------HHHHHH--H--TTS------CC---H----HH-HHHTTSEE-----------------ECCCCGGGSCHHHHHH
T ss_pred ------HHHHHH--H--HcC------CC---H----HH-HHhCCCEE-----------------EEEeccccCCHHHHHH
Confidence 000000 0 010 11 0 11 22344443 3467788999999999
Q ss_pred HHHHHHh---------chhhcCCCC---------------------CceEEEEechH------------HHhcccEEEEE
Q 018829 258 QIVATTF---------NCPYLSFRD---------------------DKPVVVVTHGD------------LLSLTDRARIR 295 (350)
Q Consensus 258 vaIArAL---------DEPts~Ld~---------------------g~TVIiiTH~~------------~~~~aDri~v~ 295 (350)
+++|+++ | |+++||. |+|||++||+. +..+||+|+ +
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi-~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTII-L 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEE-E
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEE-E
Confidence 9999998 9 9998652 89999999943 357899996 5
Q ss_pred ecCCe
Q 018829 296 TYLGE 300 (350)
Q Consensus 296 l~~G~ 300 (350)
|++|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-16 Score=147.59 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 689999999999999999999999999 99999999998874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-16 Score=152.18 Aligned_cols=176 Identities=9% Similarity=0.016 Sum_probs=98.8
Q ss_pred CeeEeEEEeC--CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc----cEEEECC----EeCCCCccccccccCCCcc
Q 018829 96 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNS----SVGDGTYFLQEYTIPRGSN 165 (350)
Q Consensus 96 L~~is~~I~~--Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~----G~I~i~G----~~i~~~~~~~~~~~~~~~~ 165 (350)
.+.|+++|++ |+.++|+||||||||||+++|+|++. |++ |++.+++ .++.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~--------------- 217 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQA--------------- 217 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTS---------------
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCccc---------------
Confidence 3459999999 99999999999999999999999999 998 8877642 2110
Q ss_pred ceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHH---------HHHHHHHHHHcCCCCccccccceeeee
Q 018829 166 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---------RNRMRCKAHKIGCEPSVIRKVNFVIFV 236 (350)
Q Consensus 166 ~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~---------~~~i~~~l~~~gl~~~~~~~~~~~~~v 236 (350)
+...+. ..+.+++|+..++..++.+|+.++..... .... ...+..++.. ...+ +.+
T Consensus 218 -~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~--~~~~--------lll 282 (365)
T 1lw7_A 218 -MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDTDFI---TTQAFCIQYEGKAHPFLDSMIKE--YPFD--------VTI 282 (365)
T ss_dssp -SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESSCHH---HHHHHHHHHHSCCCHHHHHHHHH--SCCS--------EEE
T ss_pred -CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeCCch---HHHHHHHHHcCCCCHHHHHHHhh--cCCC--------EEE
Confidence 111111 11334556655555566777765321000 0000 0011111111 1111 133
Q ss_pred cchhhh-hccCCCCCCHHHHHHHHHHHHhchhhcCCCCCceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 237 VDGLAV-LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 237 v~~~~~-~~~~~~~LSGGqrQRvaIArALDEPts~Ld~g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
+|++.. .......+|+||+||.+|+++|.+-.. ..+.+||+++| ....++++++.+ +++ ++..++++++.
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~--~~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLD--KYKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISELQ 354 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHH--GGGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSCC
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHhh
Confidence 454210 001223589999999999999943321 02567999999 677788888843 553 56666666653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-16 Score=149.38 Aligned_cols=144 Identities=11% Similarity=0.103 Sum_probs=62.8
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc-cCCCCCCCcccEEEECCEeCCCCcccc
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 156 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl-~~~~~~~p~~G~I~i~G~~i~~~~~~~ 156 (350)
+||+++|+. ..+ +++++|+| +|+||||||||||+++|.|. .. |++| +.++|.++..+
T Consensus 2 ~~l~~~~~~---~~~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t---- 59 (301)
T 2qnr_A 2 SNLPNQVHR---KSV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERT---- 59 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECC---EEE---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCc----
Confidence 478899964 245 56699998 99999999999999999997 77 8889 88888765411
Q ss_pred ccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 157 EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 157 ~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
......++.++.......+ +.+++.+.... . . .+..+..+.. + .+
T Consensus 60 ---~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~----------~--~e~~~~l~~~-l-----~~----------- 105 (301)
T 2qnr_A 60 ---VQIEASTVEIEERGVKLRLTVVDTPGYGDAI--N----------C--RDCFKTIISY-I-----DE----------- 105 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-------------------------CTTHHHH-H-----HH-----------
T ss_pred ---ceEeeEEEEecCCCcccCcchhhhhhhhhhc--C----------c--HHHHHHHHHH-H-----HH-----------
Confidence 1112234555543333232 44443331100 0 0 0000000111 1 11
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh-----chhhcC-CCC-------------CceEEEEech
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-----NCPYLS-FRD-------------DKPVVVVTHG 283 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----DEPts~-Ld~-------------g~TVIiiTH~ 283 (350)
..++++.++|||||||+++|||+ |||+++ |++ +.++|+.+||
T Consensus 106 ------~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 ------QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp ------HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGG
T ss_pred ------HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 23566778999999999999975 999875 653 5677777774
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=136.40 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=44.4
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i~ 150 (350)
|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++.
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE 65 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCC
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcce
Confidence 67798 89999999999999999999999999999 98 999999987764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-15 Score=137.66 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 566999999999999999999999999999999873
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-14 Score=125.56 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=83.8
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-----cccEEEECCEeCCCCccccccccCCCccceeeccccccc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 176 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-----~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~ 176 (350)
-|++|++++|+||||||||||+++|+|++... + ..+.+++++.+.. .. ...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~---~~~g~~~~~~i~~~~~~~~----------~~-----------~~i 76 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTF----------RP-----------ERI 76 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSCEEEEEESSSCC----------CH-----------HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCEEEEEECCCCC----------CH-----------HHH
Confidence 58999999999999999999999999976510 2 3336666653321 00 011
Q ss_pred cchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCH----
Q 018829 177 DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV---- 252 (350)
Q Consensus 177 ~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG---- 252 (350)
..+.|+..+.+.++.+|+.+....... ......+.+.+++..+--. ..+.-++++|+++.. ....+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~llilDe~~~~--l~~~~~~~~~~ 148 (231)
T 4a74_A 77 REIAQNRGLDPDEVLKHIYVARAFNSN-HQMLLVQQAEDKIKELLNT-----DRPVKLLIVDSLTSH--FRSEYIGRGAL 148 (231)
T ss_dssp HHHHHHTTSCHHHHHHTEEEEECCSHH-HHHHHHHHHHHHHHHHTTS-----SSCEEEEEEETSSHH--HHHHSCSTTHH
T ss_pred HHHHHHcCCCHHHHhhcEEEEecCChH-HHHHHHHHHHHHHHHhccc-----CCceeEEEECChHHH--hccccCCCcch
Confidence 223444444444666776553221100 0011122333333321100 012235678887542 2334554
Q ss_pred HHHHHH--HHHHHhchhhcCCCCCceEEEEec--hH----HHhcccEEEEEecCCe
Q 018829 253 EKQYNQ--IVATTFNCPYLSFRDDKPVVVVTH--GD----LLSLTDRARIRTYLGE 300 (350)
Q Consensus 253 GqrQRv--aIArALDEPts~Ld~g~TVIiiTH--~~----~~~~aDri~v~l~~G~ 300 (350)
+|||+. .+.+.|-+-. -..|+|||++|| .. +...||+++ +|++|+
T Consensus 149 ~~r~~~~~~~~~~l~~~~--~~~g~tvi~vtH~~~~~g~~~~~~~d~~l-~l~~~~ 201 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQANGGHILAHSATLRV-YLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHTCEEEEEEECC---------CCSEEE-EEEECT
T ss_pred hHHHHHHHHHHHHHHHHH--HHCCCeEEEEeecccCcchhhHhhceEEE-EEEecC
Confidence 344332 3333331100 013789999999 33 678899995 587753
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-14 Score=151.33 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=29.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHH
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I 126 (350)
++|++|++++|++++|+||||||||||+|+|
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 6779999999999999999999999999999
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-14 Score=127.31 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=35.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+|+++|++|.|+. .+ +++ |.+++|+.++|+|+||||||||+|.|+|........|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~~----~~---l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PD---IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE----SS---GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec----CC---HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 5899999999952 22 666 88999999999999999999999999998710000177787654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=146.84 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC---
Q 018829 208 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--- 273 (350)
Q Consensus 208 ~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~--- 273 (350)
++.+++ ++|..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 480 ei~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~ 542 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542 (972)
T ss_dssp HHHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHH
Confidence 445555 46899999752 14889999999999999999998 999999874
Q ss_pred -------------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 -------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 -------------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|.|||+|+| .+....||+|+ +| ++|++++.|++++++..+.
T Consensus 543 ~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi-~LgpgaG~~gG~iv~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 543 DRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDPN 603 (972)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEE-EECSSSGGGCCSEEEEECTTTTTTCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EeCCCccCCCCEEEEecCHHHHHhhhH
Confidence 899999999 33456799996 58 7999999999999987643
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-13 Score=139.40 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=46.1
Q ss_pred ccCCCCC-CHHHHHHHHHHHHh-----------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEE
Q 018829 244 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 295 (350)
Q Consensus 244 ~~~~~~L-SGGqrQRvaIArAL-----------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~ 295 (350)
.+++..| |||||||++||||| |||+++||. +.|||+||| -.+...||+++ +
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~-~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY-K 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEE-E
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-E
Confidence 3566777 99999999999998 999999985 799999999 34455799996 5
Q ss_pred ecCCe
Q 018829 296 TYLGE 300 (350)
Q Consensus 296 l~~G~ 300 (350)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 86653
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=126.70 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=43.3
Q ss_pred cCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEE
Q 018829 245 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 294 (350)
Q Consensus 245 ~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v 294 (350)
+.+..||||||||++||++| |||+++||+ +.++|++|| ......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 44556999999999999998 999999874 569999999 556678999965
Q ss_pred Eec
Q 018829 295 RTY 297 (350)
Q Consensus 295 ~l~ 297 (350)
+.
T Consensus 409 -~~ 410 (430)
T 1w1w_A 409 -VY 410 (430)
T ss_dssp -EE
T ss_pred -EE
Confidence 53
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-13 Score=131.63 Aligned_cols=122 Identities=11% Similarity=-0.019 Sum_probs=75.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC-CEeCCCCccccccccCCCccceeeccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 174 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~~i~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (350)
++++++. .+|++++|+||||||||||+|+|+|+... |..|+|.++ |.... ......+++++++...
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~--------tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQH--------TTTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC---------------------CCCEEEECTTSCEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCcc--------ceEEEEEEEECCCCEe
Confidence 4557764 48999999999999999999999998851 678999886 65432 0111123444443322
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
+. . .++.++. + ...+..+..+.+.++++.+++.. +.+..+.+|| ||
T Consensus 273 ~d-----t-----pgv~e~~---l---~~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 273 ID-----S-----PGVREFG---L---WHLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-GC 318 (358)
T ss_dssp EE-----C-----HHHHTCC---C---CCCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-TC
T ss_pred cC-----c-----ccHHHhh---h---cCCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-HH
Confidence 11 1 1222221 1 11233455667778888899987 4588999999 99
Q ss_pred HHHHHHHHHh
Q 018829 255 QYNQIVATTF 264 (350)
Q Consensus 255 rQRvaIArAL 264 (350)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999998
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-14 Score=128.74 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=26.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999998
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-13 Score=144.00 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=33.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+||++++|++++|+||||||||||+|+|+++..
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 677999999999999999999999999999987643
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-15 Score=152.37 Aligned_cols=195 Identities=17% Similarity=0.173 Sum_probs=86.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeE----------eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-cccE
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLS----------DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQ 141 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~i----------s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-~~G~ 141 (350)
+.++++|+++.|+... .+. |+.+ +|+++. +||+||||||||||+++|+|++. | ++|.
T Consensus 9 ~~i~~~~l~~~~~~~~-r~l---l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~ 76 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-RPC---IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGI 76 (608)
T ss_dssp -----------CHHHH-HHH---HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------
T ss_pred chhhhhhhhHHHHHHH-HHH---HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCe
Confidence 4688999999996321 111 2212 477764 99999999999999999999998 8 7999
Q ss_pred EEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 018829 142 VTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 221 (350)
Q Consensus 142 I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g 221 (350)
|.++|.++...... .....+..+++++|+...+. ..++.+|+.++....... ..+
T Consensus 77 vt~~g~~i~~~~~~-~~~~~~~~i~~v~Q~~~l~~----------~~tv~e~i~~~~~~~~~~--------------~~~ 131 (608)
T 3szr_A 77 VTRCPLVLKLKKLV-NEDKWRGKVSYQDYEIEISD----------ASEVEKEINKAQNAIAGE--------------GMG 131 (608)
T ss_dssp CCCSCEEEEEEECS-SSSCCEEEESCC---CCCCC----------HHHHHTTHHHHHHHHHCS--------------SSC
T ss_pred EEEcCEEEEEecCC-ccccceeEEeeecccccCCC----------HHHHHHHHHHHHHHhcCC--------------ccc
Confidence 99999886310000 00111223445555433322 124555554322111100 011
Q ss_pred CCCccc-ccc----ceeeeecchhhhhccCCCCCCHH-HHHHHHHHHHh-chhhcCCCCCceEEEEec--h----HHHhc
Q 018829 222 CEPSVI-RKV----NFVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH--G----DLLSL 288 (350)
Q Consensus 222 l~~~~~-~~~----~~~~~vv~~~~~~~~~~~~LSGG-qrQRvaIArAL-DEPts~Ld~g~TVIiiTH--~----~~~~~ 288 (350)
+..... ... .--+.++|++++.......|+.+ ++|...+++.+ .+|. +.+++++|| + .+.++
T Consensus 132 ~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 132 ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEESSSCTTTCHHHHH
T ss_pred cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEeccchhccHHHHHH
Confidence 111000 000 01257889997766656666654 55777777774 3332 346677777 2 11111
Q ss_pred c-------cEEEEEecCCeEeecCCccc
Q 018829 289 T-------DRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 289 a-------Dri~v~l~~G~iv~~g~~~~ 309 (350)
+ .+.++++.++.++..|+.++
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHH
Confidence 1 23334577777666666543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=114.92 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=40.8
Q ss_pred CeeEeE-EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 96 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 96 L~~is~-~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~ 59 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTT 59 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEES
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEc
Confidence 455777 799999999999999999999999999988 77888877553
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-14 Score=137.64 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=84.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc--------CCCCCCCcccEEEECCEeCCCCccccccccCCCccceeec-ccccccc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRSLSD 177 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~--------~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~-d~~~~~~ 177 (350)
++++|+|+||||||||+|+|.|+. . |+.|+|.++|.++.... .+...+...++..... +......
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~-~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRA-TQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTS-CEEEEETTSCEEECTTSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCC-CCEEEECCCceEEcccHHHHHHHH
Confidence 689999999999999999999997 5 89999999998875210 0000111101111100 1111111
Q ss_pred ch---hhhhHhh-HHHHHhhhhhhhhhhcCCCcHHHHHHH---HHHHHHcCCCCccccccceeeeecchhhhhccCCCCC
Q 018829 178 DA---SDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRM---RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 250 (350)
Q Consensus 178 ~v---~q~~~l~-~~~v~~~v~~~~~~~~~~~~~~~~~~i---~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~L 250 (350)
.+ +|+..+. ..++.+++.++.. ....... ...-.. .+...++.+||...+.++.. +|
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~~p-------~~~~~~~~~~~~~~~~--------~~l~~~l~~vd~~~~~~~~~-~l 142 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMADP-------GPIIQTFFSHEVLCQR--------YLLDGVIALVDAVHADEQMN-QF 142 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCCH-------HHHHHHHHHSHHHHHH--------EEEEEEEEEEETTTHHHHHH-HC
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCCCH-------HHHHHHHhcCccccCe--------EEECCEEEEEEHHHHHHHHh-hc
Confidence 11 1211110 0012222221110 1100000 000111 13455778889887765555 89
Q ss_pred CHHHHHHHHHHHHh-------chhhcC-------CCCCceEEEEec
Q 018829 251 DVEKQYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 282 (350)
Q Consensus 251 SGGqrQRvaIArAL-------DEPts~-------Ld~g~TVIiiTH 282 (350)
|+||+||+..++++ ||| .. +.++.||+++||
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred hHHHHHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 99999999988887 676 22 346899999999
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-13 Score=135.06 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=45.4
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++||++++|++++|+|+||||||||+++|+|+++ ++.|+|.++|.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCccc
Confidence 45999999999999999999999999999999999 99999999877754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-14 Score=128.05 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 172 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~ 172 (350)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .....++.+++.+|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE------EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC------EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc------hhHhhhceEEEEEEec
Confidence 78999999999999999999999986 468 888887763 1122244567777764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-14 Score=126.62 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCc---ccEEEECCEeCC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGD 150 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~ 150 (350)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccc
Confidence 5899999999999999999999999 87 899999998753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-13 Score=132.09 Aligned_cols=131 Identities=14% Similarity=0.022 Sum_probs=78.6
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE---CCEeCCCCccccccccCCCccceeecccccc--
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL-- 175 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-- 175 (350)
+++.+|++++|+||||||||||+|+|. +.. |++|+|.+ +|++++... +.... ...++++|.+...
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~~~~~--~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--RLIPF--GKGSFVGDTPGFSKV 229 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--EEEEE--TTTEEEESSCCCSSC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--EEEEc--CCCcEEEECcCcCcC
Confidence 345679999999999999999999999 998 99999999 888765211 11111 1457777765322
Q ss_pred ---ccc-hhhhhH-hhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCC
Q 018829 176 ---SDD-ASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 250 (350)
Q Consensus 176 ---~~~-v~q~~~-l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~L 250 (350)
..+ + +++. .++.. ... ...........+...++.++++.++|.+. .+++++..|
T Consensus 230 ~l~~~lt~-e~l~~~f~~~--~~~--~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~l 288 (302)
T 2yv5_A 230 EATMFVKP-REVRNYFREF--LRY--QCKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYKSYLKII 288 (302)
T ss_dssp CGGGTSCG-GGGGGGCGGG--HHH--HHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHHHHHHHT
T ss_pred cccccCCH-HHHHHHHHHH--HHc--cCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHHHHHHHH
Confidence 122 2 3331 11100 000 00001101122334568889999999852 358899999
Q ss_pred CHHHHHHHHHHH
Q 018829 251 DVEKQYNQIVAT 262 (350)
Q Consensus 251 SGGqrQRvaIAr 262 (350)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 998899999987
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-13 Score=132.03 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=40.6
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.++|++++|+||||||||||+++|+|+++ |+.|+|.+.|.++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 47899999999999999999999999999 99999999999875
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-13 Score=130.62 Aligned_cols=122 Identities=12% Similarity=-0.045 Sum_probs=76.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE---CCEeCCCCccccccccCCCccceeeccccc-cc
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LS 176 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 176 (350)
|++.+|++++|+||||||||||+|+|+|+.. |++|+|.+ +|++++... +... .+.+++++|.+.. ..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QLLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CEEE--CTTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EEEE--cCCCCEEEECcCCCcc
Confidence 5567899999999999999999999999999 99999999 888875311 1111 1246788887643 22
Q ss_pred cchhhh----hHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCC
Q 018829 177 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 251 (350)
Q Consensus 177 ~~v~q~----~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 251 (350)
++++++ ..+++. ++ +|+.++...+ ..+...++.++|+.++|... .++++|.+||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 334433 344554 56 8888764222 12334568889999999632 4688888888
Q ss_pred H
Q 018829 252 V 252 (350)
Q Consensus 252 G 252 (350)
+
T Consensus 294 e 294 (301)
T 1u0l_A 294 E 294 (301)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-12 Score=113.89 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=50.2
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++++.|+. ..+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 11 ~~~~~~~g~---~~~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 11 EFSMLRFGK---KFA---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHH---HHH---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCE
T ss_pred HHHHHHHHH---HHH---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeee
Confidence 455666643 234 56699999999999999999999999999999998 36799999987663
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-13 Score=119.21 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=35.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++|++++|+||||||||||+++|++.+ ..|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccch
Confidence 47899999999999999999999999963 468999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-13 Score=134.06 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+++||+++|+.. .+ ++++||+| +|+||||||||||+|+|+|+..
T Consensus 10 ~~l~~~~l~~~y~~~---~v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SV---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTT---TC---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCE---EE---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999753 34 66699998 9999999999999999999987
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-12 Score=133.14 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 6779999 99999999999999999999999873
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-11 Score=124.11 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 7779999999 9999999999999999999999999 99999999998774
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=132.49 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 7779999 9999999999999999999999999864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=117.80 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=87.9
Q ss_pred CeeE-eEEEeCCcEEEEEcCCCChHHHHHHHHHhcc--CCCCCCCcc----cE-EEECCEeCCCCccccccccCCCccce
Q 018829 96 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSVGDGTYFLQEYTIPRGSNSF 167 (350)
Q Consensus 96 L~~i-s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~--~~~~~~p~~----G~-I~i~G~~i~~~~~~~~~~~~~~~~~~ 167 (350)
|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++.+.. .+.++++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~~~----------~~~~i~~ 184 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTENTF----------RPERIRE 184 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSSCC----------CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCCCC----------CHHHHHH
Confidence 3334 6899999999999999999999999999998 5 676 67 788775421 0011122
Q ss_pred eeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHH---HHHHHHHHHHcCCCCccccccceeeeecchhhhhc
Q 018829 168 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 244 (350)
Q Consensus 168 ~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~---~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~ 244 (350)
+.|+..+...++.+|+.+.... ..... -+.+..++..+--. +.+.-++|+|+++-.-
T Consensus 185 -----------i~q~~~~~~~~v~~ni~~~~~~----~~~~~~~~l~~~~~~~~~lS~G-----~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 185 -----------IAQNRGLDPDEVLKHIYVARAF----NSNHQMLLVQQAEDKIKELLNT-----DRPVKLLIVDSLTSHF 244 (349)
T ss_dssp -----------HHHTTTCCHHHHGGGEEEEECC----SHHHHHHHHHHHHHHHHHSSSS-----SSCEEEEEEETSSTTH
T ss_pred -----------HHHHcCCCHHHHhhCEEEEecC----ChHHHHHHHHHHHHHHHHhccc-----cCCCCEEEEeCchHhh
Confidence 3333333334566666553211 11111 12223333332000 0123457888886432
Q ss_pred cCC--CCCCHHHHH--HHHHHHHhchhhcCCCCCceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 245 SME--GDSDVEKQY--NQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 245 ~~~--~~LSGGqrQ--RvaIArALDEPts~Ld~g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
... ..=+-+++| ...+.+.|-.=. -..++|||+++| .......+... +...|++++.+.+..++
T Consensus 245 d~~~~~~~~~~~r~~~~~~~l~~L~~la--~~~~~tvii~~h~~~~~~~~~~~~~-~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 245 RSEYIGRGALAERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQARPDAFFGDPT-RPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHCCSTTTHHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEECC----------------CCCCCTTCSEEEE
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHHHH--HHcCcEEEEEcccccccccccCCcc-ccCCcceEeecCcEEEE
Confidence 111 111223432 223333331000 013789999999 32222223332 37778888887766554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.12 E-value=8.9e-11 Score=109.68 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.6
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999999665
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-13 Score=131.23 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=39.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+|++++|+||||||||||+++|+|++. |++|.|.+.+.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 6899999999999999999999999999 89999999887764
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-11 Score=102.56 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=45.7
Q ss_pred hccCCCCCCHHHHHHHHHH------HHh---------chhhcCCCC----------------CceEEEEec-hHHHhccc
Q 018829 243 LKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 290 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIA------rAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aD 290 (350)
.++++.+||||||||++|| ||| ||||++||. +.|||++|| ..+..+||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 3678899999999999886 777 999999874 789999999 45668999
Q ss_pred EEEEEec
Q 018829 291 RARIRTY 297 (350)
Q Consensus 291 ri~v~l~ 297 (350)
+++ +|+
T Consensus 131 ~ii-~l~ 136 (148)
T 1f2t_B 131 HVI-RIS 136 (148)
T ss_dssp EEE-EEE
T ss_pred EEE-EEE
Confidence 996 473
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-11 Score=120.20 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=44.9
Q ss_pred EEEEEEECCCceEEecCCCeeEeE-------EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 146 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~-------~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G 146 (350)
..++++|-+.. ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 92 ~~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 92 AGAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred cEEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 46677774332 234 344665 678899999999999999999999999998 87 56665443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-12 Score=128.21 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=38.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcE--EEEEcCCCChHHHHHHHHHhcc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~--iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.+++++ ++.|++ .+ |+++||+|++|++ ++|+||||||||||+|+|+|+.
T Consensus 16 ~l~~~~-~~~y~~---~~----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-----C----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECC---ee----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467777 888864 22 4559999999999 9999999999999999999985
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-11 Score=117.08 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-12 Score=122.16 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=44.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCc
Confidence 66999999999999999999999999999999999 99999999874
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=100.90 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHh--ccCCCCCCC-----cccEEEECCEe
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFAS-----ERAQVTYNSSV 148 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~g--l~~~~~~~p-----~~G~I~i~G~~ 148 (350)
-|++|++++|+||||||||||++.|++ +.+ | ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-----hhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 454 4 56788887754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-12 Score=125.23 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=58.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++++++++|+. . .+ |+++||++++|++++|+||||||||||+++|+|++. |++|+|.+.|.++.
T Consensus 29 ~ie~~~~~~~~~~-~--~~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 29 LAESRRADHRAAV-R--DL---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHTCSSHHHHHHH-H--HH---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGG
T ss_pred HHeeCCcccccCh-H--HH---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCc
Confidence 5778888888853 1 33 667999999999999999999999999999999999 99999999998864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-10 Score=99.76 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=33.1
Q ss_pred EeE-EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 99 SDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 99 is~-~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
+.. .+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 12 ~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 12 LLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 443 589999999999999999999999999 4 4445555544
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-10 Score=100.06 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=51.4
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
++.+.+.++....+.+..||||||||++||++| |||+++||+ +.++|+|||
T Consensus 47 gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 47 GLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp CEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 444455555556677889999999999999998 999999874 678999999
Q ss_pred hHHHhcccEEEE
Q 018829 283 GDLLSLTDRARI 294 (350)
Q Consensus 283 ~~~~~~aDri~v 294 (350)
..+...||+++.
T Consensus 127 ~~~~~~ad~i~~ 138 (173)
T 3kta_B 127 DVMMANADKIIG 138 (173)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 666789999964
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-11 Score=116.86 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=38.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 149 (350)
+++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 175 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccH
Confidence 78999999999999999999999999999 88 89998766554
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-10 Score=100.74 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
|++++|+||||||||||+++|++ +.+|.+.++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 67999999999999999999986 3458899988654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-11 Score=116.51 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=52.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE---CCEeCCCCccccccccCCCccceeeccccccc-
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS- 176 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~- 176 (350)
+++.+|++++|+||||||||||+|+|.|+.. |..|+|.+ +|+.++.. .+.... ..+++++.+....
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~--~~~~~~---~~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRH--VELIHT---SGGLVADTPGFSSL 237 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCC--CCEEEE---TTEEEESSCSCSSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccH--HHHhhc---CCEEEecCCCcccc
Confidence 5677999999999999999999999999999 99999998 78766421 111111 1467777654322
Q ss_pred ---cc-hhhhhH-hhHHH--HHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 177 ---DD-ASDNIN-MIKLW--IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 177 ---~~-v~q~~~-l~~~~--v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
.+ + +++. .++.. ..+...|.. .....+....+.++++.+++.+
T Consensus 238 ~l~~lt~-e~l~~~f~~~~~~~~~C~f~~----c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 238 EFTDIEE-EELGYTFPDIREKSSSCKFRG----CLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp CCTTCCH-HHHGGGSHHHHHHGGGCSSTT----CCSSSCSSCHHHHHHHHTSSCH
T ss_pred ccccCCH-HHHHHHHHHHHHHhhhccccC----CCCccCHHHHHHHHHHhCCChH
Confidence 22 3 4442 22211 111111110 0111223356788899999986
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.9e-13 Score=123.87 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=40.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++++|.+++| ++|+||||||||||+++|+|.+. + +.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 56699999999 99999999999999999999987 5 78999887654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=96.25 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.3
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+..+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceecc
Confidence 5778899999999999999999999999996 3 3666665543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-09 Score=103.93 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHH--HHhccCCCCCCCccc-----EEEECCEe
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERA-----QVTYNSSV 148 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~--I~gl~~~~~~~p~~G-----~I~i~G~~ 148 (350)
-|++|++++|+||||||||||++. +.++.+ ++.| .+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 489999999999999999999994 456666 5444 77887754
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-13 Score=128.80 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=49.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCC-------cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~G-------e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
+++.++++..|+.. .+ ++++++.|.+| +.++|+||||+|||||+++|++.+... +.+.+|.+..++
T Consensus 18 ~lr~~~l~~~~g~~---~~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQE---NV---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCH---HH---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSH
T ss_pred HcCCccHHHccCcH---HH---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCH
Confidence 35666777777642 23 66699999876 899999999999999999999998210 006677666555
Q ss_pred Ee
Q 018829 147 SV 148 (350)
Q Consensus 147 ~~ 148 (350)
.+
T Consensus 91 ~~ 92 (334)
T 1in4_A 91 GD 92 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-10 Score=101.01 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=35.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC--cccEEEECCEe
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV 148 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~ 148 (350)
++-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQ 55 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSC
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCC
Confidence 33455789999999999999999999999999998 6 67888777644
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-10 Score=101.33 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHH-hccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~-gl~~ 131 (350)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55699999999999999999999999999999 9985
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-11 Score=114.69 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEE-------------------eCCcEEEEEcCCCChHHHHHHHHHhccCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEND 133 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I-------------------~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~ 133 (350)
.+|++++|++.|.+ . +++++|.+ .+|+++||+||||||||||+++|+|++..
T Consensus 36 ~~i~~~~v~~~y~~---~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~- 106 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP---L-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR- 106 (308)
T ss_dssp TTCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-
T ss_pred cccchHhHHHHHHH---H-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-
Confidence 46899999999942 3 66799988 89999999999999999999999998751
Q ss_pred CCCCcccEEEE---CCEeC
Q 018829 134 KFASERAQVTY---NSSVG 149 (350)
Q Consensus 134 ~~~p~~G~I~i---~G~~i 149 (350)
.|++|+|.+ +|...
T Consensus 107 --~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 107 --WPEHRRVELITTDGFLH 123 (308)
T ss_dssp --STTCCCEEEEEGGGGBC
T ss_pred --CCCCCeEEEEecCCccC
Confidence 167899999 77553
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-10 Score=110.61 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.+++|+||+|||||||+++|.+++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999999998
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-11 Score=109.38 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH---hccCCCCCCCcccEEEECCEe
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~---gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++++|+||||||||||+++|+ |+.. |+.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 47899999999999999999999 9998 999998877643
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-10 Score=105.58 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.|+++|+...|+ -+|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.++.
T Consensus 9 ~l~l~~~~~~~~-------------~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFA-------------RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEE-------------EEECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccC-------------CEEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 477777765442 1445556 8999999999999999999999999 99999999998873
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.6e-10 Score=104.35 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.9
Q ss_pred CcEEEEEE-EEEECCCceEEecCCCeeEeEEEeC---CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l-~~~y~~~~~~~~l~~L~~is~~I~~---Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++++|+ +++|+.+. ++ |+++||+|++ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~--~~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQ--QI---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------C--HH---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcc--hh---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 99993232 34 6779999999 99999999999999999999999765
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-09 Score=94.24 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=36.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC---cccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i 149 (350)
.++|++++|+||||||||||+++|+|+++ | ..|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcC
Confidence 46899999999999999999999999998 6 367787777544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-09 Score=99.02 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=41.3
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++|+.++|++++|+|||||||||+++.|++.+. +..|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccccc
Confidence 556678899999999999999999999999999 88889998776653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-08 Score=86.16 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.1
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++|++.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 5699999999 999999999999999999999987
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-09 Score=106.32 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+++++|.+++|+.++|+||||||||||+++|+|+++ |++|.|.+.|.+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 345889999999999999999999999999999999 999999998854
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-09 Score=105.67 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=40.7
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHh--ccCCCCCCCcccEEEECCEeCC
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g--l~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++++.++..++|.|++||||||++++|.. ++. ++.|++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 4889999999999999999999999999886 555 66688887777754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-08 Score=89.93 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999985
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-08 Score=86.10 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4788999999999999999999999999997
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-07 Score=88.34 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=50.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.|..
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 4567788888542 1338888 999999999999999999999999999 88899999876654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.9e-08 Score=85.36 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=25.7
Q ss_pred EECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 83 SYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 83 ~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.++....+ ++|+||++++|++++|+||+||||||+.+.|++.+.
T Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 5 HHHSSGVDLG---TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCCCC---CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4544433344 666999999999999999999999999999998774
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.9e-09 Score=91.24 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=42.8
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE--EECCEeCC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 150 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I--~i~G~~i~ 150 (350)
+|++..++. +.+ .+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEK---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCH---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCH---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 355555543 333 344777789999999999999999999999999985 35777 88876653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-07 Score=82.57 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|++++|+||||||||||+++|.+.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999886
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-08 Score=90.08 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHH---hccCCCCCCCcccEEE--------ECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~---gl~~~~~~~p~~G~I~--------i~G~~i~ 150 (350)
++|++++|+|||||||||++++|+ |+.. +++|.+. .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 9998 9999998 8887763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-07 Score=88.34 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.1
Q ss_pred EEEEEcCCCChHHHHHHHHHh-ccCCCCCCCcccEEEECCEeCC
Q 018829 108 SLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g-l~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+.|+||||+|||||+++|++ ++. |+.|.+.++|.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFV 76 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeec
Confidence 389999999999999999999 788 89999999987653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.8e-07 Score=86.53 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHH------HHHHh----------chhhcCCCC---------------CceEEEEec-hHHHhcccEE
Q 018829 245 SMEGDSDVEKQYNQI------VATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 292 (350)
Q Consensus 245 ~~~~~LSGGqrQRva------IArAL----------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri 292 (350)
.++..|||||+||++ +|+|| |||+++||. +.+||++|| ..+..+||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEE
Confidence 566789999999984 55655 999999873 469999999 4567899999
Q ss_pred EEEec
Q 018829 293 RIRTY 297 (350)
Q Consensus 293 ~v~l~ 297 (350)
++ |+
T Consensus 356 ~~-l~ 359 (371)
T 3auy_A 356 IN-VK 359 (371)
T ss_dssp EE-EE
T ss_pred EE-EE
Confidence 65 65
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-07 Score=82.77 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=31.9
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
..+..++|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~ 63 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAF 63 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEccccc
Confidence 34667899999999999999999999999876 5677877554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=87.30 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=37.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G 146 (350)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.+.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEE
Confidence 555777799999999999999999999999999886 6545 566544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-07 Score=82.55 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=36.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.++|++++|+|+||||||||+++|++++. +..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 56789999999999999999999999998 8888888766553
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-07 Score=81.34 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.0
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 45667899999999999999999999999997 6665
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-07 Score=89.29 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++|++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 45999999999999999999999999999999999 88899999887764
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-07 Score=92.29 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=34.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE-EECC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 146 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G 146 (350)
+++|+++.|.||+|||||||+..++.... +..|.+ ++++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDA 97 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEES
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEec
Confidence 88999999999999999999999999987 766766 5544
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-07 Score=77.39 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc--EEEECCEe
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 148 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~ 148 (350)
+|+.++|+||||||||||+++|++.+. + +| .+++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHH
Confidence 899999999999999999999999998 6 47 66666543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=76.81 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=33.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCC------cccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 149 (350)
.++|+|+||||||||++.+.|........| ..|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999876211112 578999998765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=78.42 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999987
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.4e-07 Score=81.13 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=34.9
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
-+.+.++|++++|+|+||||||||+++|+++ . |+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-~--------g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-K--------NDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-T--------TTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-c--------CCeEEEecCH
Confidence 3345578999999999999999999999987 3 7788887654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.9e-07 Score=90.94 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=37.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEE-ECCEeC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSVG 149 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~-i~G~~i 149 (350)
.+++|++++|+|+||||||||+++|++.+. |++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 467999999999999999999999999999 8886 674 888654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=6.4e-07 Score=81.78 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=38.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++++++++| ++|+||||||||||+++|++... .|.+.+++.++
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 66699999999 99999999999999999999875 57888877554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.1e-07 Score=87.53 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 566999999999999999999999999999998654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-06 Score=84.08 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=36.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC-------CCCCCCcccEEEECCE
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE-------NDKFASERAQVTYNSS 147 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~-------~~~~~p~~G~I~i~G~ 147 (350)
.+++|..++|+|+||||||||+|+|+|... .....|+.|.+.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 457899999999999999999999999211 0111289999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-06 Score=74.20 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCC------cccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 149 (350)
.++|+|+||||||||++.|.|........| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111112 367899998764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.7e-07 Score=87.03 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=37.3
Q ss_pred CeeEeEEEeCCc------EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 96 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge------~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
|++++..+.+++ ++||+||||||||||+++|.+++... |+.|.+.+-+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 555777777776 99999999999999999999998721 3556655433
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.02 E-value=8.2e-07 Score=82.45 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
+++++|++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 66699999999 89999999999999999999875 57888887654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=77.94 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCC------CCCCcccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~------~~~p~~G~I~i~G~~i 149 (350)
+++|+|++|||||||+|.|+|..... ..-+..|.+.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 49999999999999999999976410 0114568888887553
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-06 Score=76.40 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+...+|++++|+||||||||||+++|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999876
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=72.91 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 468999999999999999999999865 4567766444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.3e-06 Score=72.08 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999886
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-06 Score=86.62 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=47.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCe--------------eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~--------------~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+.|+||++.|+..... |+ |+.+.|.+|+.++|+||+|+|||||++.|++...
T Consensus 132 ~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 357899999999865433 66 7999999999999999999999999999999874
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=68.22 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 33466666666 89999999999999999998544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-06 Score=76.23 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+.+++|+||+||||||++++|++.+.-. .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~--~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH--LLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE--EEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC--cccCcceee
Confidence 5689999999999999999999877200 177888776
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.7e-06 Score=71.89 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc--EEEECCEeC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 149 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 149 (350)
++|++++|+|++||||||++++|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4689999999999999999999999887 5 46 666666444
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.9e-06 Score=79.48 Aligned_cols=40 Identities=15% Similarity=0.423 Sum_probs=34.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECCEe
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 148 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~ 148 (350)
.+|++++|+|||||||||+++.|++.+. +++| +|.+-+.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecC
Confidence 4789999999999999999999999998 8778 67665544
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5e-06 Score=73.41 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
=++++|.+++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-06 Score=83.43 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++.+++.+.|.. ..+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.+.
T Consensus 31 ie~~~~~~~~~~---~~~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 31 VESRHPRHQALS---TQL---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHCCCHHHHHHH---HHH---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred hhcCCchhhhHH---HHH---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 444555555532 123 566899999999999999999999999999999998 7778887766655
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.4e-06 Score=80.19 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++.+++|+|++|||||||+|.|.|.+. +..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 3467899999999999999999999998 88888888776654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=5e-06 Score=87.13 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
|++++++..++|+|++|||||||++.|.+..... +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 4677889999999999999999999999876510 366877 555443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=73.22 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.7
Q ss_pred CeeEeEEEe---CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 96 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 96 L~~is~~I~---~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 556888887 899999999999999999999999998 6 555544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1e-05 Score=71.86 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc--EEEECCEeC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 149 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 149 (350)
+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChHH
Confidence 3457899999999999999999999999998 8888 888876443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.3e-05 Score=68.07 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 33466677665 99999999999999999987544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.6e-06 Score=85.08 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=43.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc-cEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i 149 (350)
++++++.+.+|+.++|+||||||||||+++|++++. +.. |.+.+++.+.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcc
Confidence 566999999999999999999999999999999998 766 7787776544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.7e-06 Score=83.68 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=39.5
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+.++++++ +|++++|+||||+|||||+++|++.+. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 44477777 899999999999999999999999998 78888887763
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.60 E-value=4.6e-05 Score=66.10 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
++++++..++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 56699998887 778999999999999999987
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.60 E-value=1.7e-05 Score=78.93 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=47.8
Q ss_pred EEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 77 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++++.|+.. -++++|+ ++++++++|++||||||++..|++.+. +..++|.+.+.|..
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 34566677542 1237787 899999999999999999999999999 88889998877764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.59 E-value=5.1e-05 Score=64.86 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.57 E-value=4.3e-05 Score=68.37 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=30.4
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHH-HhccCCCCCCCcccEEEECC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I-~gl~~~~~~~p~~G~I~i~G 146 (350)
.--+++|++++|+||||||||||+..+ ....+ ...+.++++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~ 59 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVAL 59 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEES
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 446899999999999999999996555 45544 3334445544
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=3.7e-05 Score=67.62 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++|+||+||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.2e-05 Score=67.22 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.8
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+||+.++|..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.3e-05 Score=75.58 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh--ccCCCCCCCcccEEEE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTY 144 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g--l~~~~~~~p~~G~I~i 144 (350)
|++++++++ .++|+|++|||||||++.|.| +++ +..|.+.-
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~ 69 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTR 69 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccC
Confidence 666999998 899999999999999999999 666 55565543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=67.97 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999999998775
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.1e-05 Score=66.32 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=32.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE-EECC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 146 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G 146 (350)
..+|.+++|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 45789999999999999999999999987 665655 3444
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=1.2e-05 Score=70.36 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
++++||..++. .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 56688888777 578999999999999999986
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.48 E-value=1.3e-05 Score=75.85 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=47.3
Q ss_pred EEEEEEEECCCceEEecCCCee-EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 77 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~-is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++...|++. .++ ++|+.+ +++++++|++|+||||++..|++.+. +..++|.+.+.|..
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 44556666532 234 677766 99999999999999999999999998 88889998777654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=70.65 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 55578888776 899999999999999999974
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.43 E-value=9.1e-05 Score=63.26 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.43 E-value=5.8e-05 Score=66.14 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++|+|++||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00014 Score=61.40 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=3.3e-05 Score=78.31 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=38.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++++.+++| ++|+||+|+|||||+++|++... .+.+.+++.++
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~ 100 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 100 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHH
Confidence 45588999999 89999999999999999999875 46788887665
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=72.78 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=31.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC-------CCCCCCcccEEEECCEeC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE-------NDKFASERAQVTYNSSVG 149 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~-------~~~~~p~~G~I~i~G~~i 149 (350)
-.++|+|+||||||||+|.|.|... ...-.+..|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3799999999999999999999753 000115568899998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=63.60 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
.+++|+|+||||||||++.|.+.+.... ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 5799999999999999999999875111 123667765543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0001 Score=64.68 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+|++|||||||++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00014 Score=71.64 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=32.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC------CCCCCCcccEEEECCE
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 147 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G~ 147 (350)
.+..+..++|+|++|+|||||+|+|.|.-. .....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 346778899999999999999999999721 0111277888887663
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00014 Score=62.41 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998644
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00011 Score=69.47 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++.+++|+|++|||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999864
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00017 Score=60.72 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0004 Score=67.00 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.0
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 433544589999999999999999999999887665
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00026 Score=60.38 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=2.8e-05 Score=75.46 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.+.++...|... .+ +++++|.| +|+|++|+|||||++.|.+...
T Consensus 16 ~~v~~~~l~~~~~~k---~~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHHHTH---HH---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHhCCe---ee---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 457888888888542 23 45588876 9999999999999999988654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00026 Score=63.82 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+=.+|.+++|+|++||||||+.++|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578899999999999999999999744
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00024 Score=65.05 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=32.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++.++.|+|++||||||+.+.|+..+. . +.+.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~--~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----G--NIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-----T--CCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-----C--CcEEEecHHH
Confidence 45677899999999999999999998775 2 4577777443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00019 Score=65.22 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.2
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.+++| +.|+||+|+|||||+++|++.+.
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44444555 88999999999999999999875
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00087 Score=57.68 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=26.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCccc----EEEECCEe
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSSV 148 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G----~I~i~G~~ 148 (350)
.++|+|++|+|||||++.+.+-.-.....|+.+ .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 588999999999999976554321111226655 45555543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00013 Score=63.96 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00037 Score=59.68 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00033 Score=58.59 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I 126 (350)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=6.7e-05 Score=72.92 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=31.4
Q ss_pred CeeEeEEEeCCcE--EEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~--iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4457788888988 99999999999999999999764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.95 E-value=3.2e-05 Score=73.70 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.6
Q ss_pred CeeEeEEEeCCcE--EEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~--iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++..|..|++ +.+.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 5558888899988 99999999999999999999886
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00037 Score=60.34 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998665
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00051 Score=61.79 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999766
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00037 Score=63.78 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999544
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00045 Score=59.43 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987553
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00046 Score=66.66 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888876655
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00053 Score=60.72 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHh
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.+-+++|+|++||||||++++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00055 Score=58.74 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00048 Score=63.18 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+||+|||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998664
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00054 Score=59.38 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999875
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0004 Score=59.31 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998664
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00067 Score=58.94 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00061 Score=57.75 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0004 Score=69.18 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++.+++++||+||||||++..|++.+. +..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc
Confidence 578999999999999999999999998 87788888666653
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00059 Score=60.26 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|+||||||||||++.|..-++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00061 Score=58.36 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999986553
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00077 Score=58.66 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998776
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00069 Score=65.79 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
.+..++|+||+|||||||++.|...+. +..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEE
Confidence 567899999999999999999999887 666777764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0008 Score=58.81 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00083 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00071 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=64.13 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc------CCCCCCCcccEEEECC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF------ENDKFASERAQVTYNS 146 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~------~~~~~~p~~G~I~i~G 146 (350)
|-.++|+|.+|+|||||+|.|.+-. +.....|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3568999999999999999999832 1111237778888766
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00087 Score=58.60 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+|-+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00093 Score=57.22 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999986553
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00084 Score=57.41 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00073 Score=63.33 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++++..+.|.||+|+|||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 345677899999999999999999998765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00093 Score=61.52 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998753
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00096 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999999875
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0028 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00082 Score=57.34 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00089 Score=62.70 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
.+.++.|.||+||||||+.+.|..-++ .+.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 356899999999999999999987553 24566654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|++|||||||++.|.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0019 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0034 Score=54.35 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=53.89 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=56.64 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+.+++|+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999987654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0026 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.003 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0026 Score=52.55 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0013 Score=60.87 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 142 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I 142 (350)
..+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5789999999999999999999987 655544
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0026 Score=60.67 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh----ccCCCCCCCcccEEEECC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK----VFENDKFASERAQVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g----l~~~~~~~p~~G~I~i~G 146 (350)
++...+++ .|.-++|+|+||+|||||+..|.+ +.. .+...|...+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~-----dD~~~i~~~~ 183 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVA-----DDNVEIREIS 183 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEE-----SSEEEEEESS
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceec-----CCeEEEEEcC
Confidence 44488888 788999999999999999999987 554 4445555443
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=54.01 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0019 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.-.++|+|++|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44578999999999999999998743
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=54.62 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 578999999999999999987543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=57.49 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987664
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=55.85 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998663
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=54.87 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999986443
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=55.36 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987654
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=58.02 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.+++|+|+.||||||+.+.|+.-+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999986553
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=53.88 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987554
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=54.18 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.|.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=57.08 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976554
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=54.47 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987553
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=54.79 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=58.91 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999988554
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=55.80 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0016 Score=57.75 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0033 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=53.07 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...+++|+|+.||||||+.+.|+..+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999986553
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998744
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0019 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=59.80 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0025 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998775
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0014 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
+.+|+.++|+||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 35689999999999999998887653
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0022 Score=56.56 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-+++|+|+.||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0024 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=52.68 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998643
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.00086 Score=67.55 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=26.9
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++.+++| +.|+||+|+|||||+++|++...
T Consensus 43 ~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 43 RIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp TTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 356667777 78999999999999999998664
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=55.81 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998776
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0027 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998744
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0038 Score=59.85 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0029 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998776
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0045 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 48999999999999999999999888754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.006 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0013 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0015 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-.++|+|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998873
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0029 Score=53.15 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0029 Score=58.02 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998653
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0023 Score=59.06 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987644
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|++|+|||||++.|.+-..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0021 Score=60.73 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|.||+|+|||||++.+++.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999886
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=57.37 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++-+++|+||+||||||+.+.|+.-+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455799999999999999999986553
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0054 Score=52.23 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0065 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0051 Score=52.44 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0052 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=59.02 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0033 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0059 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0063 Score=51.96 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=61.15 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.-.++|+|++|+|||||++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999865
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=57.36 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++|||||||++.|.|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0018 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||||+++|++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998765
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=56.12 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999986553
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0038 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998775
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0067 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0063 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|+.|+|||||++.+.+-..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 4689999999999999999998553
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=59.25 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|+|++|+|||||+|.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0047 Score=58.64 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.+.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999887
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0041 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0037 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0032 Score=57.83 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0038 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0035 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|+|+.|+|||||+|.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0067 Score=51.51 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0078 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|+.|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0041 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0041 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998744
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0041 Score=53.83 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=55.35 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999987654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0037 Score=55.12 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987553
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0037 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988653
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0036 Score=60.89 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.004 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0058 Score=58.86 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998665
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.004 Score=60.01 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0042 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0039 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|+.|+|||||++.+.+-..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987543
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.004 Score=57.93 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0043 Score=57.43 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0039 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998643
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0047 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998743
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0046 Score=53.37 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0032 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998765
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0047 Score=53.46 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0039 Score=52.94 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0043 Score=57.38 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0047 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0038 Score=52.46 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0045 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0048 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998744
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0055 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999998887643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0094 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0058 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987664
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0041 Score=62.44 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.0
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+-+|+.++|+|++|+|||||++.|+.-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5677899999999999999999999988765
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0054 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0055 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998644
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0055 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0054 Score=56.14 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++..+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345688999999999999999998765
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=56.43 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0037 Score=52.78 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0053 Score=56.12 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0051 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998775
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=60.27 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-++..++.|+|++||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999987543
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0044 Score=58.18 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||++.|+..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4588999999999999999999876
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0052 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0058 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0065 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999888554
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0067 Score=54.35 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+|-+++|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998776
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0061 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.009 Score=53.50 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+..-+++ .|..++|+||+|||||||...|+.-
T Consensus 26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 26 HGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3355565 5788999999999999999988753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0065 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++++|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998665
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0064 Score=58.17 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998664
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0063 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.|+|||||++.+..-..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999887643
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0056 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.548 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.007 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999988765
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0036 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998854
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0073 Score=55.14 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998776
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0075 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998775
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.006 Score=55.34 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|-++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998775
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0076 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+.|.||+|+|||||++.|+..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998664
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0085 Score=57.27 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987664
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.42 E-value=0.006 Score=55.69 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++-+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678999999999999999999988775
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0081 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999997643
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0088 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998876
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0091 Score=56.19 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999988875
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0085 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0037 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0067 Score=60.23 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++|+|||||+|.|.|-.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999854
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0085 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988875
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0093 Score=52.56 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0098 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998776
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.009 Score=53.76 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|.++.+-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999999887
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0054 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999854
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.01 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=57.11 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.++.|.||+|||||||+..++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999988876554
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.014 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999976543
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=51.50 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=52.95 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=25.8
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.+++..++.|+||.||||+|..+.|+.-|.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3445667899999999999999999997664
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.012 Score=56.17 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 34789999999999999999987665
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=48.86 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.-+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 345688999999999999999998764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=55.21 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
|+.+.--+++|+++.|.|++|+|||||+..++.-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455458999999999999999999988887544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=58.10 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=58.31 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998774
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||.|+|||||++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999987653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.854 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHH-HHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNR-ISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~-I~gl~~ 131 (350)
.++|+|+.|+|||||++. +.+-..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 478999999999999998 666543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+-.++|+|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++..+.|.||+|+|||||++.|+..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999988775
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997765
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.023 Score=49.81 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-+++ .|.-++|.|+||+|||||.-.+..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55554 577899999999999999887764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||+++|++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0071 Score=54.90 Aligned_cols=28 Identities=36% Similarity=0.723 Sum_probs=23.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.| +.|.||+|+|||||+++|+....
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 33445 77999999999999999998664
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=55.51 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998775
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.68 E-value=0.0079 Score=59.70 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=29.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
.+++|+|++|+||||++..|++.+. .....|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 5899999999999999999999887 554456654444
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|.||+|+|||||++.+...+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998775
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.017 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 3789999999999999999987665
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.02 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCChHHHHH-HHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLV-NRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl-~~I~gl~ 130 (350)
+|.++.|.||.||||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5555544
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.0062 Score=52.70 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988864
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.031 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 588999999999999988763
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=54.30 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.017 Score=55.12 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+||||++++|+..+.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999998774
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.018 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++..++++|++|+|||||+|.|.+..
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 45679999999999999999999873
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.025 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|..+.|.||.|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346789999999999999999999886
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.013 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.019 Score=52.31 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.|+....
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 578999999999999999998654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.0041 Score=53.70 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.|.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988763
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.016 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+|.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.018 Score=51.75 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45555789999999999999999999876
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.018 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||++.|+..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998775
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.024 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.024 Score=54.43 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+.++++---.++|+|.++||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 5566655556899999999999999998864
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.019 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++..++++|.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 46789999999999999999999875
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.027 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.-+.|.||.|+|||||++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458899999999999999999876
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||.|+|||+|+++|+..+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577889999999999999998764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.022 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|.+++|||||+|.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.018 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+|-.++|+|+.|+|||||+|.|.+-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999999853
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.029 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.017 Score=61.37 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..|+.+.|+||+||||||++.++.+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999999876554
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.029 Score=51.07 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.+||+|+.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987554
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.021 Score=57.88 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|-++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999886
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.99 E-value=0.031 Score=52.54 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+.|.||.|+|||+|++.|+....
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3588999999999999999998654
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.027 Score=57.90 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|-++.|+|++||||||+.+.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998765
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.024 Score=57.89 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|..|+|||||+|.|.|--
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.032 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
....+.|.||+|+|||||++.|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 345789999999999999999998664
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.018 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+.-+.|.||+|+|||++++.|...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 345889999999999999988753
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.031 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||.|+|||||++.++..+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.032 Score=54.15 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|.++.|.||.|+|||||+..++.-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 7899999999999999999997776544
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.042 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||+|++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35688999999999999999998765
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.033 Score=53.33 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-+++|..+.|.||.|+|||||+..++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788889999999999999999998753
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.029 Score=52.62 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987664
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.034 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.733 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||+++|+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999998876
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.032 Score=58.00 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+|.++.|+|.+||||||+.+.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.037 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
|..+.|.||.|+|||||++.+..-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999998753
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.03 Score=53.65 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||++.|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998774
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.03 Score=55.28 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=28.4
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 443489999999999999999999998887664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 350 | ||||
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 7e-04 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.002 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 0.004 |
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 7e-04
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 159
D DV T +L+IG G GKSSL+ R F +D F E A + ++ +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLR----FTDDTFDPELAATIGV------DFKVKTIS 50
Query: 160 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 219
+ +++DT + + + R + VI D + ++
Sbjct: 51 VDGNKAKLAIWDTAGQERFRT----LTPSYY----RGAQGVILVYDVTRRDTFVKLDNWL 102
Query: 220 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 269
E R + L K + + +V++ A + ++
Sbjct: 103 NELETYCTRNDIVNM-----LVGNKIDKENREVDRNEGLKFARKHSMLFI 147
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (86), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 99 SDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 157
S+YD + K LLLIG G GKS L+ R F +D + ++ Y S++G + ++
Sbjct: 1 SEYDYLFK---LLLIGNSGVGKSCLLLR----FSDDTYTND-----YISTIGV-DFKIKT 47
Query: 158 YTIPRGSNSFSLYDT 172
+ + ++DT
Sbjct: 48 VELDGKTVKLQIWDT 62
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.7 bits (84), Expect = 0.002
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 163
+ ++L++G G GKSS VN I + S + R
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIG--------ERVVSI---SPFQSEGPRPVMVSRSRA 78
Query: 164 SNSFSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSLRN--RMRCKAH 218
+ ++ DT L + N +N+IK ++++ L + R D+ + N ++ KA
Sbjct: 79 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAI 138
Query: 219 KIGCEPSVIRKVNFVIFVVDGL 240
+ K +
Sbjct: 139 TDSFGKGIWNKAIVALTHAQFS 160
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 35.7 bits (82), Expect = 0.004
Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 20/224 (8%)
Query: 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 159
+V ++L+GP G GK++ + I+ + E + ++
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 160 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 219
I S++LY ++ D+ + + + K+ E + V + L NR
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK------ 136
Query: 220 IGCEPSVI-----RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 274
P + ++V +V V E S+++ + + L +
Sbjct: 137 ----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM--RAELKKLQRQLG 190
Query: 275 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316
+ VTH + +++ DR G L + +++D P +
Sbjct: 191 VTTIYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSPDEVYDKPAN 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.57 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.38 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.82 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.64 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.56 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.52 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.51 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.44 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.41 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.38 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.38 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.36 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.36 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.35 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.33 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.28 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.28 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.24 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.21 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.16 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.11 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.05 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.96 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.93 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.92 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.91 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.91 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.91 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.9 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.87 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.87 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.86 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.86 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.86 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.85 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.81 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.8 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.77 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.76 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.73 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.71 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.67 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.62 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.62 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.6 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.6 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.6 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.59 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.58 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.57 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.56 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.56 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.53 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.49 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.45 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.43 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.41 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.39 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.39 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.38 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.37 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.37 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.36 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.26 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.25 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.21 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.19 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.18 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.17 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.16 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.11 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.08 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.08 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.06 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.06 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.06 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.05 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.03 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.0 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.99 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.98 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.97 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.96 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.96 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.91 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.87 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.84 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.79 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.78 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.77 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.76 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.75 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.74 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.73 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.72 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.7 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.68 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.65 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.63 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.59 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.58 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.57 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.57 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.56 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.55 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.54 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.46 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.44 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.44 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.41 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.41 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.39 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.32 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.31 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.31 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.28 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.27 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.23 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.14 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.13 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.11 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.11 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.1 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.08 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.05 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.03 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.03 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.02 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.01 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.98 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.96 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.89 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.88 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.87 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.81 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.81 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.78 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.59 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.56 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.54 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.52 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.5 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.43 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.4 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.39 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.39 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.21 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.12 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.05 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.02 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.95 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.82 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.72 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.52 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.25 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.19 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.14 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.12 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.08 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.95 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.87 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.62 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.44 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.42 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.28 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.18 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.13 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.05 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.9 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.54 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.17 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.91 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.61 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.53 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.05 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.21 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.87 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.67 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.59 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 88.57 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.3 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.13 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.97 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 87.97 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.28 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.22 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.11 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 85.76 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.71 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.64 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.29 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.16 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 84.84 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.57 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 84.3 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 83.84 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 83.84 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 83.73 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.67 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.11 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 83.01 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.0 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 82.89 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.84 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 82.79 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.78 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.62 |
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=6e-51 Score=376.35 Aligned_cols=211 Identities=14% Similarity=0.219 Sum_probs=176.0
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
..|+++||+++|+.+. ++| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 2 ~~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~i~~~ 72 (242)
T d1oxxk2 2 VRIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASN 72 (242)
T ss_dssp CCEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEET
T ss_pred CEEEEEeEEEEECCCC-EEE---EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEEeecC
Confidence 4689999999996443 567 666999999999999999999999999999999999 9999999999998521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .......++++++++|+. .+++. ++.+||.+++... ..++++.++++.++++.+|+.+
T Consensus 73 ~-~~~~~~~rr~ig~vfQ~~-----------~L~p~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 132 (242)
T d1oxxk2 73 G-KLIVPPEDRKIGMVFQTW-----------ALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH------- 132 (242)
T ss_dssp T-EESSCGGGSCEEEEETTS-----------CCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c-hhhcchhhccceEEeccc-----------cccccccHHHHhhhhhHhh-cCCHHHHHHHHHHHHhhcChHh-------
Confidence 1 111111233455655554 44444 7778888877643 4567788899999999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+++++|++||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 133 ----------~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~ 202 (242)
T d1oxxk2 133 ----------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (242)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred ----------hhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 56999999999999999999999 999999985 999999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.+.++||||+ +|++|+|++.|++++++.+|.+++++.++
T Consensus 203 ~~~~~~dri~-vm~~G~iv~~g~~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 203 DIFAIADRVG-VLVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (242)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 7889999996 59999999999999999999999887775
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-50 Score=373.55 Aligned_cols=205 Identities=15% Similarity=0.189 Sum_probs=170.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+..|+++||+++|++ .+| |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 M~~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~ 72 (239)
T d1v43a3 4 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 72 (239)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred cCeEEEEEEEEEECC---EEE---EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEcceeccc
Confidence 456999999999975 456 666999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....++.++|++|+ +.+++. ++.+|+.++.... ..++++.++++.++++.++|.+
T Consensus 73 ------~~~~~r~ig~v~Q~-----------~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 128 (239)
T d1v43a3 73 ------LPPKDRNISMVFQS-----------YAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 128 (239)
T ss_dssp ------SCGGGGTEEEEEC-----------------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ------CCcccceEEEEeec-----------hhhcccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 11112244555554 444544 6777777766543 4566788899999999999988
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 129 -----------~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~ 197 (239)
T d1v43a3 129 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197 (239)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 56999999999999999999999 999999985 999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+++.++||||+ +|++|+|++.|++++++.+|.+++++.++
T Consensus 198 ~~a~~~~dri~-vm~~G~iv~~G~~~el~~~P~~~~~~~~l 237 (239)
T d1v43a3 198 VEAMTMGDRIA-VMNRGQLLQIGSPTEVYLRPNSVFVATFI 237 (239)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHhh
Confidence 68889999996 59999999999999999999998887764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.2e-50 Score=372.40 Aligned_cols=211 Identities=12% Similarity=0.143 Sum_probs=174.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
|+.|+++||+|+|++ .+| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 M~~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~i~~ 69 (240)
T d1g2912 1 MAGVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVAD 69 (240)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCcEEEEeEEEEECC---EEE---EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEEecc
Confidence 356999999999975 456 666999999999999999999999999999999999 999999999999852
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
..........++.+++++|++..+..+ ++.+|+.++...+ +.+..+.++++.++++.+++.+
T Consensus 70 ~~~~~~~~~~~r~ig~v~Q~~~L~~~l----------tV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~------- 131 (240)
T d1g2912 70 PEKGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE------- 131 (240)
T ss_dssp GGGTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG-------
T ss_pred cchhhhcccccccceecccchhhcchh----------hhhHhhhhhHHHc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 111111222344567777766554333 4555665555433 3456788899999999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+.+++|++||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 132 ----------~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 132 ----------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp ----------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 56999999999999999999999 999999985 999999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
++..+||||+ +|++|+|++.|++++++.+|.+++++.+
T Consensus 202 ~~~~~~drv~-vm~~G~iv~~G~~~el~~~P~~~~~~~f 239 (240)
T d1g2912 202 EAMTMGDRIA-VMNRGVLQQVGSPDEVYDKPANTFVAGF 239 (240)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHh
Confidence 8889999996 5999999999999999999999988765
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-51 Score=375.59 Aligned_cols=209 Identities=13% Similarity=0.148 Sum_probs=172.3
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++||+++|+.+. .++| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mi~v~nlsk~y~~~~~~~~a---l~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~i~~~ 72 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTL 72 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEE---EEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEECTT
T ss_pred CEEEEeEEEEeCCCCeeEEE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeEeeeC
Confidence 689999999996543 3567 566999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
...+...+ |+.+++++|+.. +++. ++.+|+.++.... ..+.++.++++.++|+.+||.+
T Consensus 73 ~~~~~~~~-rr~ig~VfQ~~~-----------l~~~~tv~eni~~~l~~~-~~~~~~~~~~v~~~L~~vgL~~------- 132 (240)
T d3dhwc1 73 SESELTKA-RRQIGMIFQHFN-----------LLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD------- 132 (240)
T ss_dssp CHHHHHHH-HHHEEECCSSCC-----------CCTTSBHHHHHHHHHHTT-TCCTTHHHHHHHHHHHHHSTTT-------
T ss_pred Chhhhhhh-hccccccccccc-----------cCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 11111111 224556665543 3333 6667777766544 3456778899999999999988
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
.++++|++||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 133 ----------~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~ 202 (240)
T d3dhwc1 133 ----------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202 (240)
T ss_dssp ----------TTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 56999999999999999999999 999999985 999999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
.+..+||||+ +|++|+|++.|+++++|++|.+++++.
T Consensus 203 ~~~~~~dri~-vl~~G~iv~~G~~~ei~~~P~~~~t~~ 239 (240)
T d3dhwc1 203 VVKRICDCVA-VISNGELIEQDTVSEVFSHPKTPLAQK 239 (240)
T ss_dssp HHHHHCSEEE-EEETTEEEEEEETTTTTCSSCCTTTTC
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhCCCChHHcC
Confidence 8889999996 599999999999999999999999764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-50 Score=369.07 Aligned_cols=202 Identities=12% Similarity=0.164 Sum_probs=139.8
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++||+|+|++ .++ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~--- 66 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND--- 66 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSCCTT---
T ss_pred CEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEECCC---
Confidence 689999999975 456 666999999999999999999999999999999999 999999999998861
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.++|++|++.. ++. ++.+|+.++.... ..++++.++++.++++.+++.+
T Consensus 67 ---~~~~~r~ig~v~Q~~~l-----------~~~~tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~--------- 122 (232)
T d2awna2 67 ---TPPAERGVGMVFQSYAL-----------YPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH--------- 122 (232)
T ss_dssp ---SCGGGTCEEEECSSCCC---------------------------------CHHHHHHHHHHHHC-------------
T ss_pred ---Cchhhceeeeecccccc-----------ccchhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCChh---------
Confidence 11223345666665543 443 6677777665433 3445678889999999999988
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+++++|++||||||||++||||| ||||++||+ |+|||+||| +++
T Consensus 123 --------~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a 194 (232)
T d2awna2 123 --------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194 (232)
T ss_dssp -------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999984 999999999 688
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.++||||+ +|++|+|++.|++++++.+|.+++++.++
T Consensus 195 ~~~~dri~-vm~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 195 MTLADKIV-VLDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHhCCEEE-EEECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 89999996 59999999999999999999988877654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.8e-49 Score=358.92 Aligned_cols=200 Identities=13% Similarity=0.198 Sum_probs=166.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+|+|++ . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 mi~v~nlsk~y~~--~--a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~i~~-- 66 (229)
T d3d31a2 1 MIEIESLSRKWKN--F--S---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (229)
T ss_dssp CEEEEEEEEECSS--C--E---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC--E--E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEeccc--
Confidence 6899999999964 2 4 777999999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.++|++|+...+..+ ++.+|+.++...... + .++++.++++.+++.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~~----------tV~enl~~~~~~~~~-~---~~~~~~~~l~~~~l~~--------- 119 (229)
T d3d31a2 67 ----LSPEKHDIAFVYQNYSLFPHM----------NVKKNLEFGMRMKKI-K---DPKRVLDTARDLKIEH--------- 119 (229)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTS----------CHHHHHHHHHHHHCC-C---CHHHHHHHHHHTTCTT---------
T ss_pred ----cchhHhcceeeccccccCccc----------cHHHHHHHHHhhccc-c---HHHHHHHHHHHhcchh---------
Confidence 111233566777766555443 445555555443322 2 2357888999999988
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+++++|.+||||||||++||||| ||||++||+ |+|||+||| +++
T Consensus 120 --------~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~ 191 (229)
T d3d31a2 120 --------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (229)
T ss_dssp --------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --------hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH
Confidence 56999999999999999999999 999999984 899999999 688
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
.++||||+ +|++|+|++.|++++++.+|.+.+++.++
T Consensus 192 ~~~~drv~-vm~~G~iv~~g~~~el~~~P~~~~v~~fl 228 (229)
T d3d31a2 192 RIMADRIA-VVMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (229)
T ss_dssp HHHCSEEE-EESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred HHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 89999996 59999999999999999999998877665
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.6e-49 Score=365.91 Aligned_cols=221 Identities=16% Similarity=0.119 Sum_probs=174.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.|+++||+|+|++ .+| |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLVR 70 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEEE
T ss_pred eEEEEEEEEEECC---EEE---EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEeccCC
Confidence 5899999999975 456 666999999999999999999999999999999999 99999999999986211
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.. ........ .......+..+++|+|++.+++. ++.+|+.++.......+..+.++++.++++.+++.+.
T Consensus 71 ~~-~~~~~~~~-~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------- 141 (258)
T d1b0ua_ 71 DK-DGQLKVAD-KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER------- 141 (258)
T ss_dssp CT-TSSEEESC-HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH-------
T ss_pred cc-chhccccc-HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchh-------
Confidence 00 00000000 00000112223445555554444 6677777765555556677888999999999999863
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..+++|.+||||||||++||||| ||||++||. |+|||+||| +.+
T Consensus 142 ---------~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~ 212 (258)
T d1b0ua_ 142 ---------AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 212 (258)
T ss_dssp ---------HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred ---------hhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH
Confidence 24788999999999999999999 999999974 899999999 688
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
..+||||+ +|++|+|++.|++++++.+|.+++++.++.
T Consensus 213 ~~~adri~-vm~~G~iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 213 RHVSSHVI-FLHQGKIEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCCSHHHHHHHH
T ss_pred HHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHHHh
Confidence 89999996 599999999999999999999999988764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.6e-47 Score=347.67 Aligned_cols=199 Identities=18% Similarity=0.145 Sum_probs=157.2
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++||+|+|+.+. .+.| |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mI~i~nlsk~y~~~~~~~~a---l~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~i~~~ 72 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEeEEEEeCCCCeeEEE---EeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEEcCcC
Confidence 689999999996543 3557 566999999999999999999999999999999999 9999999999998732
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...+...++++.+++++|++..+..+ ++.+|+.++.... ...+..+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~r~~~ig~v~Q~~~l~~~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----- 137 (230)
T d1l2ta_ 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (230)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred ChhhcchhhcceEEEEecchhhCcCc----------cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh-----
Confidence 21221222233456666665444332 5566666655432 234556778889999999999864
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-~ 283 (350)
+++++|++|||||||||+||||| ||||++||+ |+|||+||| -
T Consensus 138 -----------~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~ 206 (230)
T d1l2ta_ 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (230)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH
Confidence 35889999999999999999999 999999984 899999999 3
Q ss_pred HHHhcccEEEEEecCCeEeecCCc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPA 307 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~ 307 (350)
.++++||||+ +|++|+|+++|++
T Consensus 207 ~~a~~~drv~-~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 207 NVARFGERII-YLKDGEVEREEKL 229 (230)
T ss_dssp HHHTTSSEEE-EEETTEEEEEEEC
T ss_pred HHHHhCCEEE-EEECCEEEEeccC
Confidence 4457999996 5999999999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.3e-46 Score=348.11 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=148.7
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+|+|+++.++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mle~knvsf~Y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~- 69 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNI- 69 (242)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTT-
T ss_pred CEEEEEEEEECCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEEeccc-
Confidence 68999999999765444 788999999999999999999999999999999999 9999999999998611
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
. ....++.++|++|++..|.+ ++.+|+.++... ....+.+.++++.+++...+....+..
T Consensus 70 --~-~~~~r~~i~~v~Q~~~lf~~-----------ti~eNi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T d1mv5a_ 70 --S-LENWRSQIGFVSQDSAIMAG-----------TIRENLTYGLEG------DYTDEDLWQVLDLAFARSFVENMPDQL 129 (242)
T ss_dssp --S-CSCCTTTCCEECCSSCCCCE-----------EHHHHTTSCTTS------CSCHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred --c-HHHHHhheEEEccccccCCc-----------chhhheeccccc------ccchhhHHHHHHHHHhhhhhccCcccc
Confidence 1 11123355666666555544 444555443321 111233444455555544322222222
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHHhc
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 288 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~~~ 288 (350)
.. ...+.+..||||||||++||||| ||||++||. ++|||+||| -.....
T Consensus 130 ~~------~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 203 (242)
T d1mv5a_ 130 NT------EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (242)
T ss_dssp GC------EESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred cc------cccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 22 23456778999999999999999 999999984 899999999 234456
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 018829 289 TDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 289 aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||+ +|++|+|++.|+++++++.
T Consensus 204 ~D~i~-vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 204 ADKIY-FIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp CSEEE-EEETTEECCCSCHHHHHHH
T ss_pred CCEEE-EEECCEEEEECCHHHHHhC
Confidence 99996 5999999999999999874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-46 Score=348.37 Aligned_cols=207 Identities=14% Similarity=0.123 Sum_probs=150.9
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
|+++||+|+|+++.. .+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~--- 69 (241)
T d2pmka1 2 ITFRNIRFRYKPDSP-VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLAL--- 69 (241)
T ss_dssp EEEEEEEEESSTTSC-EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT---
T ss_pred eEEEEEEEEeCCCCc-ce---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEEecc---
Confidence 789999999965442 34 777999999999999999999999999999999999 999999999999861
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
+...+.+..+++|+|++.++..++.+|+.++... .. .+++..+++..++...+....+..
T Consensus 70 ------------~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~---~~----~~~~~~~~~~~~~~~~i~~~~~~~- 129 (241)
T d2pmka1 70 ------------ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---MS----VEKVIYAAKLAGAHDFISELREGY- 129 (241)
T ss_dssp ------------SCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTT---CC----HHHHHHHHHHHTCHHHHTTSTTGG-
T ss_pred ------------cchhhhhceEEEEecccccCCccccccccccCcc---cc----HHHHHHHHHHHhhHHHHHhhhcch-
Confidence 2222223333444444444444556666654331 11 223334444444432211111111
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHHhcc
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 289 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~~~a 289 (350)
.+.....+..||||||||++||||| ||||++||. ++|+|+||| -...+.|
T Consensus 130 -----~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~ 204 (241)
T d2pmka1 130 -----NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA 204 (241)
T ss_dssp -----GSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTS
T ss_pred -----hhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhC
Confidence 1134667889999999999999999 999999984 899999999 3455789
Q ss_pred cEEEEEecCCeEeecCCccccccCCCCCCh
Q 018829 290 DRARIRTYLGELLGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 290 Dri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 319 (350)
|||+ +|++|+|++.|++++++++|...|.
T Consensus 205 D~i~-vl~~G~Iv~~G~~~ell~~~~~~y~ 233 (241)
T d2pmka1 205 DRII-VMEKGKIVEQGKHKELLSEPESLYS 233 (241)
T ss_dssp SEEE-EEETTEEEEEECHHHHHHSTTCHHH
T ss_pred CEEE-EEECCEEEEECCHHHHHhCCCCHHH
Confidence 9995 5999999999999999998776653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.4e-45 Score=339.25 Aligned_cols=199 Identities=16% Similarity=0.224 Sum_probs=157.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+|+++||+++|++ .++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 d~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~i~~ 72 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred ceEEEEeeEEEEECC---EEE---EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEeccccccc
Confidence 468999999999975 456 666999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHc-CCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~~~~~~~ 230 (350)
.. .....+..++|++|+...+..+ ++.+|+.++... .......++.+.++++.+ ++.+
T Consensus 73 ~~---~~~~~r~gi~~~~q~~~l~~~l----------tv~en~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~------ 131 (240)
T d1ji0a_ 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred cc---HHHHHHhcccccCcccccCCcc----------cHHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhChHH------
Confidence 11 1111233466777776665544 333444433322 122344555666666665 5666
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++++++||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 132 -----------~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~ 200 (240)
T d1ji0a_ 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999984 899999999 6
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.+.++||||+ +|++|+|++.|++++++++|
T Consensus 201 ~~~~~~drv~-vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 201 GALKVAHYGY-VLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HHHHHCSEEE-EEETTEEEEEEEHHHHHTCH
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHhcCH
Confidence 8889999996 59999999999999998754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.8e-44 Score=329.42 Aligned_cols=200 Identities=18% Similarity=0.223 Sum_probs=163.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 154 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 154 (350)
+++ ++.++|++ .. + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 l~v-~~~k~~g~---~~----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~i~~--- 64 (240)
T d2onka1 3 LKV-RAEKRLGN---FR----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP--- 64 (240)
T ss_dssp EEE-EEEEEETT---EE----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT---
T ss_pred EEE-EEEEEECC---EE----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCc---
Confidence 677 67899975 21 3 5999995 68999999999999999999999999 999999999999862
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 155 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
....++.++|++|+...+..+ ++.+|+.+++. ..++.+.++++.++++.+|+.+
T Consensus 65 ---~~~~~r~ig~v~Q~~~l~~~l----------tV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~---------- 118 (240)
T d2onka1 65 ---LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLR---NVERVERDRRVREMAEKLGIAH---------- 118 (240)
T ss_dssp ---SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTT----------
T ss_pred ---CCHHHcCceeeccchhhcccc----------hhhHhhhhhhc---ccCHHHHHHHHHHHHHhcCcHh----------
Confidence 222234566666665443222 66677777654 3345677889999999999988
Q ss_pred eecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHHH
Q 018829 235 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~~ 286 (350)
+++++|.+||||||||++||||| ||||++||+ |+|||+||| +++.
T Consensus 119 -------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T d2onka1 119 -------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp -------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 56999999999999999999999 999999984 899999999 6888
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 327 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 327 (350)
++||||+ +|++|++++.|+++++++.| ..+++.++...+
T Consensus 192 ~~adri~-vm~~G~ii~~G~~~el~~~~-~~~v~~fl~~~n 230 (240)
T d2onka1 192 MLADEVA-VMLNGRIVEKGKLKELFSAK-NGEVAEFLSARN 230 (240)
T ss_dssp HHCSEEE-EEETTEEEEEECHHHHHHSC-CSSHHHHGGGHH
T ss_pred HhCCEEE-EEECCEEEEEecHHHHhcCC-CHHHHHHhCcch
Confidence 9999996 59999999999999999876 456677766443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-45 Score=340.63 Aligned_cols=209 Identities=12% Similarity=0.137 Sum_probs=160.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+|+++||+++|++ .+| |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 M~iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~i~~ 70 (254)
T d1g6ha_ 2 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 70 (254)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred cceEEEEEEEEEECC---eEE---EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEeccc
Confidence 468999999999975 456 666999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhh-hhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~-~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.. .....+..+++++|++..+..+ |.+|+.+............ .........+...+++.++++.+++.+
T Consensus 71 ~~---~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 142 (254)
T d1g6ha_ 71 KE---PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH----- 142 (254)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred hh---HHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-----
Confidence 11 1122233467777777665544 5555543210000000000 001112234566678889999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 143 ------------~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl 210 (254)
T d1g6ha_ 143 ------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 210 (254)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred ------------hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 45889999999999999999999 999999974 999999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+++.++||||+ +|++|+|++.|++++++.
T Consensus 211 ~~~~~~~Drv~-vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 211 DIVLNYIDHLY-VMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp STTGGGCSEEE-EEETTEEEEEEESHHHHH
T ss_pred HHHHHhCCEEE-EEeCCEEEEEecHHHHhh
Confidence 68889999996 599999999999988654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-46 Score=345.11 Aligned_cols=200 Identities=11% Similarity=0.118 Sum_probs=145.7
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.|+++||+|+|++.....+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~i~~ 80 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKPLPQ 80 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred cceEEEEEEEEECCCCCCCEe---EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEecch
Confidence 356999999999975332334 777999999999999999999999999999999999 999999999999861
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHH-----HHHHHHHHHc--CCCC
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR-----NRMRCKAHKI--GCEP 224 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~-----~~i~~~l~~~--gl~~ 224 (350)
... ...++.+++++|++..| ..++.+|+.++..... ...... ..+.+.++.+ +++.
T Consensus 81 ---~~~-~~~r~~i~~v~Q~~~lf-----------~~tv~eni~~g~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~~ 143 (251)
T d1jj7a_ 81 ---YEH-RYLHRQVAAVGQEPQVF-----------GRSLQENIAYGLTQKP--TMEEITAAAVKSGAHSFISGLPQGYDT 143 (251)
T ss_dssp ---BCH-HHHHHHEEEECSSCCCC-----------SSBHHHHHHCSCSSCC--CHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred ---hhh-HHHHHHhhhcccccccc-----------Ccchhhhhhhhhcccc--hHHHHHHHHHHHHHHHHHHhccccchh
Confidence 000 01122345555555444 4455566655532111 111111 1112223333 3333
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.+++.+.+||||||||++||||| ||||++||. ++|+|
T Consensus 144 -----------------~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi 206 (251)
T d1jj7a_ 144 -----------------EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206 (251)
T ss_dssp -----------------BCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEE
T ss_pred -----------------hHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEE
Confidence 34778899999999999999999 999999873 78999
Q ss_pred EEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 279 VVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 279 iiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+||| -...+.||||+ +|++|+|++.|+|+++++.+
T Consensus 207 ~itH~l~~~~~aDrI~-vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 207 LITQHLSLVEQADHIL-FLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp EECSCHHHHHTCSEEE-EEETTEEEEEECHHHHHHHT
T ss_pred EEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 9999 34456799996 59999999999999998753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.4e-44 Score=329.71 Aligned_cols=204 Identities=14% Similarity=0.136 Sum_probs=169.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.|+++||+++|+. .++ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 aI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~i~~~- 69 (238)
T d1vpla_ 2 AVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEE- 69 (238)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTC-
T ss_pred CEEEEeEEEEECC---EEE---EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEecccC-
Confidence 5889999999975 355 666999999999999999999999999999999999 9999999999998521
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
... .++.+++++|+...+..+ +.|++.++... . ..+..+..+.+..+++.+++.+
T Consensus 70 ---~~~-~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~-----------~-~~~~~~~~~~~~~~l~~~~l~~-------- 125 (238)
T d1vpla_ 70 ---PHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----------Y-ASSSSEIEEMVERATEIAGLGE-------- 125 (238)
T ss_dssp ---HHH-HHTTEEEECTTCCCCTTSBHHHHHHHHHHH-----------H-CCCHHHHHHHHHHHHHHHCCGG--------
T ss_pred ---hHH-HHhhEeEeeeccccCCCccHHHHHHHHHHh-----------c-CCCHHHHHHHHHHHHHhCCCHH--------
Confidence 111 134578888887666655 66665553321 1 3345677788899999999988
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
..++++.+||||||||++||||| ||||++||+ |+|||++|| +++
T Consensus 126 ---------~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~ 196 (238)
T d1vpla_ 126 ---------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196 (238)
T ss_dssp ---------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ---------HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999984 899999999 788
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+||||+ +|++|+|++.|+++++...+........+
T Consensus 197 ~~~~drv~-vl~~G~iv~~g~~~el~~~~~~~~~~~~f 233 (238)
T d1vpla_ 197 EFLCDRIA-LIHNGTIVETGTVEELKERYKAQNIEEVF 233 (238)
T ss_dssp TTTCSEEE-EEETTEEEEEEEHHHHHHHTTCSSHHHHH
T ss_pred HHhCCEEE-EEECCEEEEEcCHHHHHhccCCchHHHHH
Confidence 89999996 59999999999999998877766654443
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.6e-45 Score=341.44 Aligned_cols=205 Identities=10% Similarity=0.123 Sum_probs=149.5
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+-|+++||+|+|+.+. .++ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 11 ~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~ 81 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLRE 81 (253)
T ss_dssp CCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTT
T ss_pred ceEEEEEEEEEEeCCCC-Cce---eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcccch
Confidence 34699999999997544 234 777999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. .... .++.++|++|++..+.+.+. +|+.++... ....+++.++++..++.+.+....+
T Consensus 82 ~---~~~~-~r~~i~~v~Q~~~l~~~ti~-----------~n~~~~~~~------~~~~~~i~~a~~~~~l~~~i~~l~~ 140 (253)
T d3b60a1 82 Y---TLAS-LRNQVALVSQNVHLFNDTVA-----------NNIAYARTE------EYSREQIEEAARMAYAMDFINKMDN 140 (253)
T ss_dssp B---CHHH-HHHTEEEECSSCCCCSSBHH-----------HHHHTTTTS------CCCHHHHHHHHHTTTCHHHHHHSTT
T ss_pred h---hhhh-hhheEEEEeeccccCCcchh-----------hhhhhcCcc------cCCHHHHHHHHHHHhHHHHHHhccc
Confidence 1 1111 12245666666655544444 444443211 1122344455555554432211111
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 286 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~ 286 (350)
++.. .+.+.+..||||||||++||||| ||||++||. ++|||+||| -...
T Consensus 141 gl~t------~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 214 (253)
T d3b60a1 141 GLDT------IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 214 (253)
T ss_dssp GGGS------BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT
T ss_pred cchh------hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence 1111 34677889999999999999999 999999984 899999999 3445
Q ss_pred hcccEEEEEecCCeEeecCCccccccC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.||||+ +|++|+|++.|+|+++++.
T Consensus 215 ~~~D~v~-vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 215 EQADEIV-VVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp TTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 7899996 5999999999999999975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4e-45 Score=340.38 Aligned_cols=204 Identities=12% Similarity=0.118 Sum_probs=152.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+.|+++||+|+|+++.. ++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 15 g~I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~- 84 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEA-PI---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKD- 84 (255)
T ss_dssp CCEEEEEEEECSCSSSC-CS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGG-
T ss_pred CEEEEEEEEEEeCCCCC-cc---eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEEccc-
Confidence 45999999999975532 34 777999999999999999999999999999999999 999999999999861
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
+...+.+..+++|+|+..++..++.+||.++.. . ...+++.++++.+++.+.+...+++
T Consensus 85 --------------~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~---~----~~~~~~~~al~~~~l~~~i~~lp~g 143 (255)
T d2hyda1 85 --------------FLTGSLRNQIGLVQQDNILFSDTVKENILLGRP---T----ATDEEVVEAAKMANAHDFIMNLPQG 143 (255)
T ss_dssp --------------SCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS---S----CCHHHHHHHHHHTTCHHHHHTSTTG
T ss_pred --------------CCHHHhhheeeeeeccccCCCCCHHHHHhccCc---C----CCHHHHHHHHHHhCCHHHHHhcccc
Confidence 122222333334444444444455666655432 1 1234566677777776533222223
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec-hHHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH-~~~~~ 287 (350)
+.. .....+..||||||||++||||| ||||++||. ++|+|+||| -...+
T Consensus 144 l~t------~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~ 217 (255)
T d2hyda1 144 YDT------EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 217 (255)
T ss_dssp GGC------BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred ccc------hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333 23445678999999999999999 999999874 899999999 34557
Q ss_pred cccEEEEEecCCeEeecCCccccccCC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
.||||+ +|++|+|++.|+++++++.+
T Consensus 218 ~~D~ii-~l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 218 HADKIV-VIENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp TCSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 899996 59999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.2e-40 Score=300.76 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=141.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++||+++| . |++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++....
T Consensus 3 il~~~dv~~~~-----~-----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~------~~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 3 VMQLQDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEECCTT-----T-----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC------CCSSEEEESSSBGGGSC
T ss_pred EEEEECcccCc-----e-----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------CCceEEEECCEECCcCC
Confidence 68999997654 2 77799999999999999999999999999999964 57899999999875211
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
... + +...++.++........ ++.+++.++.. .....+.+.++++.+++.+
T Consensus 67 -~~~--~-~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~------~~~~~~~~~~~~~~~~l~~--------- 117 (231)
T d1l7vc_ 67 -ATK--L-ALHRAYLSQQQTPPFAT----------PVWHYLTLHQH------DKTRTELLNDVAGALALDD--------- 117 (231)
T ss_dssp -HHH--H-HHHEEEECSCCCCCSSC----------BHHHHHHHHCS------CTTCHHHHHHHHHHTTCTT---------
T ss_pred -HHH--H-HhhceeeeccccCCccc----------cHHHHhhhccc------hhhHHHHHHHHHHhcCCHh---------
Confidence 111 1 01123444433211111 11222222111 1233456788899999988
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh----------------chhhcCCCC----------------CceEEEEe
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 281 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPts~Ld~----------------g~TVIiiT 281 (350)
.+++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 118 --------~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vt 189 (231)
T d1l7vc_ 118 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSS 189 (231)
T ss_dssp --------TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred --------HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45899999999999999999974 999999984 99999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
| +.+.++|||++ +|++|++++.|+++++++.|
T Consensus 190 Hdl~~~~~~~dri~-vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 190 HDLNHTLRHAHRAW-LLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CCHHHHHHHCSBCC-BEETTEECCCSBHHHHSCHH
T ss_pred CCHHHHHHHCCEEE-EEECCEEEEECCHHHHhCCh
Confidence 9 68899999996 59999999999999998754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-38 Score=299.35 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=124.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeecccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 175 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 175 (350)
|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+ ++|++|+...+
T Consensus 52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~-----------------i~~v~Q~~~l~ 109 (281)
T d1r0wa_ 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSGR-----------------VSFCSQFSWIM 109 (281)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEECCSC-----------------EEEECSSCCCC
T ss_pred EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEEECCE-----------------EEEEecccccc
Confidence 888999999999999999999999999999999999 99999999883 36777776666
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHH
Q 018829 176 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 255 (350)
Q Consensus 176 ~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 255 (350)
.+.+.+|+ .++.. ... .....+++.+++...+..-.+.. .+.+.+.+.+||||||
T Consensus 110 ~~tv~eni-----------~~~~~----~~~----~~~~~~~~~~~~~~~i~~l~~~~------~~~~~~~~~~LSgGqk 164 (281)
T d1r0wa_ 110 PGTIKENI-----------IFGVS----YDE----YRYKSVVKACQLQQDITKFAEQD------NTVLGEGGVTLSGGQR 164 (281)
T ss_dssp SEEHHHHH-----------TTTSC----CCH----HHHHHHHHHTTCHHHHTTSTTGG------GCEECTTCTTSCHHHH
T ss_pred Cceeeccc-----------ccccc----ccc----hHHHHHHHHHHhHHHHHhchhhh------hhhhhhhccCCCHHHH
Confidence 55555544 33321 111 11222333333221110000000 1134566778999999
Q ss_pred HHHHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 256 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 256 QRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
||++||||| ||||++||. ++|+|+||| -...+.||||+ +|++|+|++.|++++
T Consensus 165 QRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~-vl~~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 165 ARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL-ILHQGSSYFYGTFSE 243 (281)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEE-EEETTEEEEEECHHH
T ss_pred HHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEE-EEECCEEEEECCHHH
Confidence 999999999 999999873 899999999 45567899996 599999999999999
Q ss_pred ccc
Q 018829 310 IFD 312 (350)
Q Consensus 310 l~~ 312 (350)
++.
T Consensus 244 L~~ 246 (281)
T d1r0wa_ 244 LQS 246 (281)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.4e-35 Score=264.89 Aligned_cols=170 Identities=15% Similarity=0.196 Sum_probs=123.0
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.|+++||+++|+ .++ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~lev~~ls~~y~--~~v-----l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~i~~-- 67 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK-- 67 (200)
T ss_dssp EEEEEEEEEESS--SEE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG--
T ss_pred eEEEEEEEEEeC--CeE-----EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEehhH--
Confidence 589999999994 234 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
.+..+.|.+++......+ +.+++.... ..... ...++++.++++.+++.+
T Consensus 68 -------~~~~i~~~~~~~~~~~~~t~~~~l~~~~-----------~~~~~---~~~~~~~~~~l~~~~~~~-------- 118 (200)
T d1sgwa_ 68 -------VKGKIFFLPEEIIVPRKISVEDYLKAVA-----------SLYGV---KVNKNEIMDALESVEVLD-------- 118 (200)
T ss_dssp -------GGGGEEEECSSCCCCTTSBHHHHHHHHH-----------HHTTC---CCCHHHHHHHHHHTTCCC--------
T ss_pred -------hcCcEEEEeecccCCCCcCHHHHHHHHH-----------HhcCC---ccCHHHHHHHHHHcCCcc--------
Confidence 122445666665444333 333332211 11111 112344667788888765
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEechHHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH~~~~~ 287 (350)
+++++.+||||||||++||||| ||||++||. +.++|+++|.+ ..
T Consensus 119 ----------~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l~ 187 (200)
T d1sgwa_ 119 ----------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LS 187 (200)
T ss_dssp ----------TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CT
T ss_pred ----------cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech-hh
Confidence 2567889999999999999999 999999985 33333334422 25
Q ss_pred cccEEEEEecC
Q 018829 288 LTDRARIRTYL 298 (350)
Q Consensus 288 ~aDri~v~l~~ 298 (350)
+||++. +|++
T Consensus 188 ~~D~~~-~l~~ 197 (200)
T d1sgwa_ 188 YCDVNE-NLHK 197 (200)
T ss_dssp TSSEEE-EGGG
T ss_pred hcchhh-heee
Confidence 799995 4754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.38 E-value=4.7e-15 Score=126.18 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=33.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.++|+||||||||||+++|+|.++ +..|.+...+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~-----~~~g~~~~~~~~~ 38 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC-----CCcceEEECCcch
Confidence 489999999999999999999999 9999999887654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=2.8e-07 Score=83.75 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEE-Ee
Q 018829 247 EGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI-RT 296 (350)
Q Consensus 247 ~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v-~l 296 (350)
...+|+|||+...++..+ |||.++|++ +.-||++|| ..+...+|+++. .+
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEE
Confidence 457999999998887765 999999764 788999999 566678898854 35
Q ss_pred cCC
Q 018829 297 YLG 299 (350)
Q Consensus 297 ~~G 299 (350)
.+|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred eCC
Confidence 555
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=7.2e-07 Score=74.25 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=29.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.+|++.+| +++|+|||||||||++.+|.-++-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 56688888776 899999999999999999986553
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=8.2e-06 Score=66.71 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998775
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=1.5e-05 Score=67.07 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.++.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.56 E-value=1.9e-05 Score=64.84 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|.+++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999988664
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.52 E-value=2e-05 Score=64.47 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|-++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998775
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.51 E-value=2.3e-05 Score=69.41 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 143 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~ 143 (350)
+|.+.+++|+||+|||||+|.|.+-.. ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-----~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-----hhccCcc
Confidence 589999999999999999999988665 4557665
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=1.9e-05 Score=64.62 Aligned_cols=24 Identities=38% Similarity=0.822 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||+|||||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999999999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=3.2e-05 Score=63.30 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+.++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578899999999999999999998775
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.38 E-value=3.5e-05 Score=63.66 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++|||||||++.|...+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 789999999999999998888776
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.38 E-value=4e-05 Score=62.65 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++|+||+|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998775
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.36 E-value=4.8e-05 Score=61.99 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999886
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.36 E-value=4.6e-05 Score=62.35 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+|-.++|.||+||||||+.+.|+--+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999987665
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=6.6e-05 Score=69.91 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEEE
Q 018829 246 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIR 295 (350)
Q Consensus 246 ~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v~ 295 (350)
....||||||.++++|-.+ |||+++||+ +.-+|++|| ..+...||+++.|
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 3456899999998888654 999999874 456999999 6788899998654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.33 E-value=5.2e-05 Score=61.43 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.28 E-value=5.2e-05 Score=63.12 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++||.||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999998776
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.28 E-value=2.5e-05 Score=69.40 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+|.+.+++|+||+|||||+|.|.+-.. ...|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-----~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-----hhhccccc
Confidence 578899999999999999999998766 55577763
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=6e-05 Score=60.22 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999998775
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.24 E-value=7e-05 Score=60.13 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++.|.||+|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=5e-05 Score=63.32 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|-++.|+|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999998764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=8.5e-05 Score=64.35 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.++.|+||||||||||++.|.--++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999877654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.19 E-value=7.8e-05 Score=61.11 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|.|+.||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998776
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.16 E-value=8.5e-05 Score=60.40 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+||+||||||+.+.|+--+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999986554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.00013 Score=67.94 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=23.4
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
++++..+.+.+|+|||||||||++.+|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455655699999999999999999985
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.05 E-value=0.00012 Score=61.77 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|||||||+|.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00014 Score=62.21 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++||.|++|||||||.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.00018 Score=59.20 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|+.|||||||++.|.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999988543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.00031 Score=58.26 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
=.+||+|.+|+|||||+|.|.|-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.92 E-value=0.00017 Score=59.59 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00021 Score=58.75 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+++|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.00022 Score=56.82 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999844
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.91 E-value=0.00026 Score=60.95 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|+.|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999987654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.91 E-value=0.00021 Score=60.11 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+||.||||||+.+.|+--+.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45899999999999999999987653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.0002 Score=60.39 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|+||||||||||++.|..-++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.87 E-value=0.00024 Score=58.88 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|+|++|+|||||+|.|.|-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.00026 Score=59.60 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999886554
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.86 E-value=0.00014 Score=60.60 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 018829 109 LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+||+|++++|||||+|.|.|-.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999997743
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.86 E-value=0.00025 Score=56.63 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|||||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.86 E-value=0.00028 Score=59.13 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
|+|-.+.|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999999544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00025 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
|=.++|+|+.|+|||||+|.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00036 Score=57.63 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
|++|+++.|.||+|||||||+.-++.-.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999988777544
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.00027 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|||||||+|.|.+--
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.81 E-value=0.00029 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|||||||++.+.+--
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987743
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00027 Score=59.93 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|+||||||||||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999877654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.80 E-value=0.0002 Score=58.58 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|||++|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.0003 Score=59.25 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+-.++.|+||.||||||+.+.|+.-|.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.76 E-value=0.00026 Score=58.07 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998886
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.73 E-value=0.00033 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999988775
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.71 E-value=0.00032 Score=57.94 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+|++||||||+.+.|+-.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999987664
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.67 E-value=0.00025 Score=58.84 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 018829 109 LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+||+|.+++|||||+|.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00047 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|+||.||||||..+.|+--+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.62 E-value=0.00033 Score=59.00 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.++.|+||.||||||+.+.|+--+.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.60 E-value=0.00036 Score=58.45 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|+||.||||||+.+.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987664
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.00045 Score=56.67 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|+|++||||||+.+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999997775
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.00047 Score=63.43 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++||.|++|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 799999999999999999999885
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.59 E-value=0.001 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.|||||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999988554
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.58 E-value=0.00052 Score=56.53 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999987664
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00028 Score=57.81 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.56 E-value=0.00048 Score=57.76 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++++|.+|||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.56 E-value=0.00048 Score=57.66 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
++||.|++||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.55 E-value=0.00045 Score=57.91 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+++|-|+.||||||+++.|...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999988765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.53 E-value=0.00056 Score=58.25 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|-||+||||||+.+.|+--+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999998665
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.50 E-value=0.00064 Score=56.75 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHH
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
++-+++.++|++||||||+++-+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999998774
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00064 Score=57.45 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.||.||||||+.+.|+--|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999997664
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.45 E-value=0.00062 Score=60.54 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999854
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.43 E-value=0.00073 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999997764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.41 E-value=0.0009 Score=55.68 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 018829 109 LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+||+|...||||||+|.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.39 E-value=0.0006 Score=62.96 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+.-+.|.||.|||||||++.|.+..+ +..=-|.+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~-----~~~rivti 199 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISI 199 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEE
T ss_pred CCCEEEEeeccccchHHHHHHhhhcc-----cccceeec
Confidence 34489999999999999999999998 66545555
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.00026 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+|.|.|--
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.38 E-value=0.00068 Score=59.05 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||.|||||||++.|++-+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999876
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0011 Score=58.46 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=22.8
Q ss_pred eEEEe-CCcEEEEEcCCCChHHHHHHHHHh
Q 018829 100 DYDVP-KTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 100 s~~I~-~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
++.+. .+.++.|.|||.|||||++|.+.=
T Consensus 34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 34 PLNLSPQRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEECCCceEEEEeccCchhhHHHHHHHHH
Confidence 34443 346899999999999999998863
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00065 Score=58.36 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.36 E-value=0.00081 Score=54.86 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.27 E-value=0.0017 Score=52.77 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|++|||||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998865
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.26 E-value=0.001 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.00097 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||.||||||..+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999987664
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0011 Score=56.62 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~ 127 (350)
++||+|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.19 E-value=0.0012 Score=56.89 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=31.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc--cEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~--G~I~i~G~~i~ 150 (350)
++|-++-|.|.+|||||||.+.|...+. ... -.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~-----~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-----HhcCceEEEEcchHHH
Confidence 4788999999999999999999986553 222 34678886553
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.18 E-value=0.0011 Score=56.00 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0013 Score=55.86 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++|.++.|.||+|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999999987764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.0036 Score=52.37 Aligned_cols=20 Identities=60% Similarity=0.845 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0014 Score=53.57 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998875
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.08 E-value=0.0022 Score=56.06 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.1
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
|+++. ++++.|.|||.|||||++|.+.
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred eEEeC-CcEEEEECCCccccchhhhhhH
Confidence 44454 3589999999999999999776
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0014 Score=56.22 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|-+++|-|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998775
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0014 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998776
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.06 E-value=0.0017 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++++||+||||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999999988666676665
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.06 E-value=0.0014 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||+|+|||||+++|+..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0015 Score=55.38 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0047 Score=50.19 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997664
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0012 Score=60.99 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-++||+||.|||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999988775
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.00 E-value=0.0017 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0016 Score=53.10 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0018 Score=55.70 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+.||.|+|||||+++|+.-+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999999887
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.98 E-value=0.0014 Score=53.64 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999998865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0018 Score=53.72 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|+||.||||||+.+.|+--+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999987653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.96 E-value=0.0018 Score=54.59 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+||.||||||+.+.|+--|.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHC
Confidence 3678999999999999999997654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.96 E-value=0.0017 Score=55.88 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.++.|.||.|+|||||++.++.-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 346789999999999999998875544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0019 Score=53.04 Aligned_cols=21 Identities=43% Similarity=0.838 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.002 Score=55.00 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999998763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0018 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 018829 109 LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.|.||+|+|||||+++|+.-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.0021 Score=52.19 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987664
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.002 Score=60.86 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+||+|.+|+|||||+|.|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.79 E-value=0.0021 Score=55.47 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+.||.|+|||||+++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998775
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0024 Score=51.96 Aligned_cols=21 Identities=48% Similarity=0.653 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.78 E-value=0.0025 Score=54.59 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
+++|.++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999977554
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0024 Score=54.87 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.+++|=|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999998776
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.77 E-value=0.0028 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHH
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I 126 (350)
+++|+++.|.|++|+|||||+--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999997543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0024 Score=54.60 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
|++|.++.|.||+|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999887764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0023 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.74 E-value=0.00099 Score=60.59 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++||.|+|||||||+.+.|.-++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999988886
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0025 Score=52.71 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|+.|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.0022 Score=58.38 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.++||+|||||+|+|+|+..+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHhhccc
Confidence 456899999999999999999775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0026 Score=52.17 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.72 E-value=0.0028 Score=53.56 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+++|+++.|.|++|+|||||+--++--
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998777643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0027 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.68 E-value=0.0028 Score=52.42 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0026 Score=51.99 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.66 E-value=0.0033 Score=53.92 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|.++.|.||+|||||||+.-++--.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987766544
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0026 Score=51.57 Aligned_cols=21 Identities=48% Similarity=0.763 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++++|++|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.003 Score=51.58 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 378999999999999999987654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0027 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0027 Score=51.30 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0036 Score=51.21 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|++|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.58 E-value=0.0033 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|+.|+|||||++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.57 E-value=0.0041 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999886
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0032 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0034 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.|.||+|||||+|++.|+..+.
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEeeCCCCCCccHHHHHHHHHcC
Confidence 477999999999999999998775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0031 Score=52.23 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=23.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
.+.|+|.+|+|||||++.+. +.... .|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~--~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQ--DPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSC--CCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCC--CCeee
Confidence 57899999999999999984 34322 27777
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.0034 Score=51.02 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.50 E-value=0.0033 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++||+|...||||||++.|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 69999999999999999998754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.46 E-value=0.0037 Score=51.73 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|.+++|-|+=|||||||.|.|+.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999998775
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.0036 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0035 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+..-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.41 E-value=0.0021 Score=52.96 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|++|||||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0039 Score=51.10 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 378999999999999999987553
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.39 E-value=0.0035 Score=55.23 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.|.||.|||||+|++.|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 367999999999999999998665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0041 Score=50.48 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999997764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.004 Score=51.12 Aligned_cols=21 Identities=48% Similarity=0.797 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.0037 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||+|+||||++++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999987654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0027 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.+++++||+|+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999987766666665
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0045 Score=50.46 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.31 E-value=0.0041 Score=54.63 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=24.1
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999887764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0044 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0042 Score=50.88 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.28 E-value=0.0069 Score=50.97 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
|+..-+.+ .|.-+.|.||||+|||||.-.+.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 44466666 67889999999999999986654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.27 E-value=0.0043 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++++||+|+||||.+-=|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999988777776665
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0044 Score=50.60 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.23 E-value=0.0047 Score=56.77 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-++||.||-|||||||+..|...+.
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999987654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0049 Score=50.18 Aligned_cols=21 Identities=52% Similarity=0.713 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0043 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..-+.|.||+|+|||+|++.|++.+.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHhC
Confidence 34478999999999999999999886
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.13 E-value=0.0047 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+.||.|||||+|++.|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 67999999999999999998664
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.0051 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998876554
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.0043 Score=53.39 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 018829 109 LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.|.||.|+||||++++++.-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.10 E-value=0.0033 Score=51.42 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.+.|+|++|+|||||++.+..-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.0058 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 467999999999999998765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.06 E-value=0.0051 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||.|+||||++++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 57999999999999999998654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.05 E-value=0.0043 Score=53.65 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...+++++||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999987666665555
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.03 E-value=0.0037 Score=54.19 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=20.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+--+++++||+|+||||.+-=|+-.+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999987555554444
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.006 Score=49.60 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.03 E-value=0.0049 Score=59.06 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.++||+|||||-|+|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999886
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.02 E-value=0.0088 Score=48.82 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccE
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 141 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~ 141 (350)
.+.|+|..|+|||||++.+..-.- |+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-----~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-----AGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-----CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-----CCccE
Confidence 478999999999999998876555 66663
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0037 Score=51.18 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987643
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.98 E-value=0.006 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.96 E-value=0.0064 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.89 E-value=0.0069 Score=57.06 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.-.+.|.||.||||||++..+.....
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 445899999999999999999998765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.007 Score=49.02 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999998754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0043 Score=50.72 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=8.6
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986664
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.81 E-value=0.0065 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||.|||||+|++.++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 77999999999999999998765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0069 Score=50.14 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 488999999999999987653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.008 Score=49.63 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++++|+.|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999977653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.59 E-value=0.009 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998664
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0083 Score=49.83 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999977654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.56 E-value=0.0085 Score=49.42 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999975543
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.54 E-value=0.0052 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999998774
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.52 E-value=0.012 Score=48.25 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
.+.|+|..|+|||||++.+..-.-. ..|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSS--CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCceee
Confidence 4789999999999999998655432 236666
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.50 E-value=0.0074 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.43 E-value=0.0083 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|.-.||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999955
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.008 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|+||-++|||||+|.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5899999999999999999998654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.39 E-value=0.02 Score=48.01 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=22.8
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
+..-+++ .|.-++|.|+||+|||||.-.+.
T Consensus 6 H~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 6 HGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 3344544 56789999999999999886654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.012 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.+|+++.|.|++|+|||||+--|+.-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999999998776643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.35 E-value=0.01 Score=50.85 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
.+.|+|.+|+|||||++.+..-. +.|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~----~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILH----VVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----cCCCCC
Confidence 57899999999999999874322 127666
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.011 Score=53.43 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=27.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|-+|+..+|+|++|+|||||+..|+.-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999987554
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.12 E-value=0.0064 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.|+||.|+|||||+|.+.++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999997
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.015 Score=51.71 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=30.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
|+.|.++-|.||+|||||||+-.++..... +..--+++|.+
T Consensus 51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~----~g~~~vyidtE 91 (263)
T d1u94a1 51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAE 91 (263)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred ccCceEEEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEEccc
Confidence 789999999999999999998777766551 32223556553
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.012 Score=53.61 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.++||+|+|||.|++.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 578999999999999999999875
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.95 E-value=0.011 Score=54.91 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=27.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++++.++.+.||.|+|||||.++|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 357888999999999999999999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.014 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999998775
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.72 E-value=0.025 Score=46.96 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=21.6
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
.-+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus 9 ~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 44444 67789999999999999885443
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.52 E-value=0.015 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+||||..-+|||||+|.|+|.-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC
Confidence 389999999999999999988643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.25 E-value=0.022 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+||+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 589999999999999999998665
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.19 E-value=0.024 Score=50.52 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=26.6
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+.|.++-|.||+|||||||+-.++....
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 78999999999999999999988887765
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.14 E-value=0.02 Score=51.34 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=29.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC---CCC----CCCcccEEEECC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE---NDK----FASERAQVTYNS 146 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~---~~~----~~p~~G~I~i~G 146 (350)
-.+||||...||||||++.|++.-. .++ ..|..|.|.+..
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 3599999999999999999998632 111 135668887654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.12 E-value=0.043 Score=48.44 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=29.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC------CCCCCCcccEEEECC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNS 146 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G 146 (350)
.+||||-.-+|||||++.|++.-. -+...|.-|.|.+..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 589999999999999999996543 222346678876643
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.08 E-value=0.025 Score=50.45 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=30.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccE-EEECCE
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ-VTYNSS 147 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~-I~i~G~ 147 (350)
=++.|.++-|.||+|||||||+-.++.... ...|. |++|.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q-----~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH-----HTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh-----cCCCEEEEEECC
Confidence 378999999999999999999766665554 33454 455543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.95 E-value=0.045 Score=48.38 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
..+++|+|.-|.|||||++.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.87 E-value=0.025 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-+||+|..+||||||++.|...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.02 Score=49.26 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998774
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.62 E-value=0.025 Score=50.29 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~ 127 (350)
.++|+|..|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.028 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.+.||.|+||||+++.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478999999999999999998775
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.031 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 367899999999999999988765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.28 E-value=0.039 Score=50.36 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.5
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...++| ++.++||.|+|||.|.+.|++-..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 445666 666789999999999999998764
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.18 E-value=0.052 Score=48.52 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=26.2
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
=+.+-+|+..+|+|++|+|||||+..|+.-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 367889999999999999999997777654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.13 E-value=0.034 Score=51.56 Aligned_cols=27 Identities=41% Similarity=0.813 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++- +.++||+|+|||-|.|.|+.++.
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 4443 55789999999999999998875
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.032 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHH-HHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNR-ISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~-I~gl~~ 131 (350)
..+.|+|++|||||++++. |..++.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999864 444444
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.90 E-value=0.035 Score=49.60 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~ 127 (350)
-+||+|..|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999984
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.54 E-value=0.045 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||+|||||-|+++++--..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 57999999999999999987654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.17 E-value=0.044 Score=49.66 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=26.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
.+.++||+|+|||.|++.|+..+-. ....-+.++.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~----~~~~~~~~~~ 89 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFD----TEEAMIRIDM 89 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHS----SGGGEEEECT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcC----CCcceEEEec
Confidence 5779999999999999999997631 2334555553
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.91 E-value=0.051 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+||+|.-++|||||++.|.+...
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 379999999999999999987653
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.61 E-value=0.1 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|.|=|+-||||||+++.|..-+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578899999999999999999886
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.063 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.||||.|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999997665
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.05 E-value=0.077 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+.||||.|.|||+++.-|+....
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 467999999999999999997665
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.21 E-value=0.083 Score=45.06 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++--++.|.||.++|||+++.+|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 35667899999999999999999999987
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.87 E-value=0.076 Score=47.36 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.6
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
=+.|-+|+.++|+|++|+|||+|+..+.....
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 36788999999999999999999986554443
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.67 E-value=0.091 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|+|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478999999999999999987665
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.59 E-value=0.099 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|+|=|+-||||||+++.|...+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998876
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=88.57 E-value=0.12 Score=45.43 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+-.++|+|-.-+|||||+|.|.|-..
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 44689999999999999999999654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.30 E-value=0.05 Score=41.37 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=20.0
Q ss_pred eCCcEEEEEcCCCChHHHHH-HHHHhcc
Q 018829 104 PKTTSLLLIGPKGSGKSSLV-NRISKVF 130 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl-~~I~gl~ 130 (350)
++|+.+.|.+|.|||||+.+ ..+....
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 57899999999999999544 3444333
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.13 E-value=0.13 Score=45.45 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++--++.|.||-++|||||+++|..++.
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35566899999999999999999999985
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.97 E-value=0.12 Score=44.01 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~ 127 (350)
-++|+|..++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 37999999999999999884
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.97 E-value=0.14 Score=40.08 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|=.+.+.|-+|||||||.+.|.--+-
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~ 31 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFL 31 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3577889999999999999999965443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.28 E-value=0.15 Score=43.57 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 018829 109 LLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~g 128 (350)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999954
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.22 E-value=0.077 Score=47.51 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.2
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3678899999999999999999976554
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.11 E-value=0.13 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.9
Q ss_pred EEEEEcCCCChHHHH-HHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSL-VNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTL-l~~I~gl~ 130 (350)
-+.|+|+-||||||. +..+..++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHH
Confidence 467999999999964 55554443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=85.76 E-value=0.14 Score=39.41 Aligned_cols=21 Identities=38% Similarity=0.398 Sum_probs=16.6
Q ss_pred CcEEEEEcCCCChHHHHHHHH
Q 018829 106 TTSLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I 126 (350)
-+...|.+|.|||||+++-.+
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHH
Confidence 456778999999999987443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.71 E-value=0.16 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.2
Q ss_pred eCCcEEEEEcCCCChHHHHHH
Q 018829 104 PKTTSLLLIGPKGSGKSSLVN 124 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~ 124 (350)
+.|++..+.|-||+|||||-.
T Consensus 12 ~~~~~alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLST 32 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHHC
T ss_pred CCCCEEEEEccCCCCccccee
Confidence 468899999999999999763
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.64 E-value=0.15 Score=44.80 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=16.3
Q ss_pred EEEEEcCCCChHHHH-HHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSL-VNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTL-l~~I~gl~ 130 (350)
.+.|.|+.||||||. +..++.++
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHH
Confidence 467899999999964 44444443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.29 E-value=0.25 Score=39.17 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHH-HHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSS-LVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKST-Ll~~I~gl~~ 131 (350)
|.+..|+||=.||||| |++.+.....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~ 28 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEY 28 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence 6778899999999999 7887766543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.16 E-value=0.17 Score=45.82 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCChHHHHHH
Q 018829 105 KTTSLLLIGPKGSGKSSLVN 124 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~ 124 (350)
.|++..+.|.||+|||||--
T Consensus 13 ~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TCCEEEEEECTTSCHHHHTC
T ss_pred CCCEEEEEccCCCCcccccc
Confidence 47899999999999999753
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.57 E-value=0.23 Score=42.91 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~ 127 (350)
-++|+|..++|||||+..|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998885
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=84.30 E-value=0.24 Score=42.86 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..-+.|.||.|+||+++.++|-..-.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 35688999999999999999986554
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=83.84 E-value=0.25 Score=49.27 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.+.+.|.|+||||||+-.|.|...+
T Consensus 85 ~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 85 ENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999887755
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=83.84 E-value=0.13 Score=44.72 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.1
Q ss_pred EeCCcEEEEEcCCCChHHH--HHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSS--LVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKST--Ll~~I~gl~ 130 (350)
+.+|+.+.|.+|+|||||+ |..++....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999996 335554444
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.73 E-value=0.33 Score=40.48 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+-.+.+.||+|+||||+++.++....
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999999998664
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.67 E-value=0.22 Score=45.56 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 018829 109 LLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~ 127 (350)
+||+|.-|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999995
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.11 E-value=0.26 Score=44.68 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCChHHHHHH
Q 018829 105 KTTSLLLIGPKGSGKSSLVN 124 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~ 124 (350)
.|++..+.|-||+|||||--
T Consensus 13 ~gd~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp TCCEEEEECCTTSSHHHHHC
T ss_pred CCCEEEEEccCCCCccccee
Confidence 67888999999999999973
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.01 E-value=0.26 Score=49.33 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.+.+.|.|+||||||.-.|.|...+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999987664
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.00 E-value=0.22 Score=43.14 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 018829 109 LLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~ 127 (350)
++|+|..++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999999993
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.89 E-value=0.17 Score=42.88 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
+|+-+.|++|+|||||+..-+.+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHH
Confidence 45778899999999997654433
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.84 E-value=0.26 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 018829 109 LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
..||||+|+|||+++.-|+.-.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999998777543
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=82.79 E-value=0.51 Score=43.07 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=17.4
Q ss_pred CcEEEEEcCCCChHHHHHHHH
Q 018829 106 TTSLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I 126 (350)
+.+..|.||-|+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 458999999999999987443
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.78 E-value=0.31 Score=48.71 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.+.+.|.|.||||||+-.|.|...+
T Consensus 90 ~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 90 EDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999988766
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=80.62 E-value=0.34 Score=49.09 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...+.+.|.|+||||||+-.|.|...+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999998887663
|