Citrus Sinensis ID: 018852

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT
cccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHccccccccccccEEEEccccccEEEEEEccccHHHHcccccEEEEEEEcEEEccccccccccEEEccccccccEEEEEEEEcccccccHHHHHHHHcccccccccccEEEEccccHHHHHHHHccccEEEEEEcccccccccccccccEEEEEccccHHHHHcccEEEcccEEEEEEEEEEEEccccHHHHccHHHHHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHcccccccccccc
ccHHHHHHHcccHHccccccccccccccccccccEEcccccccccccccccEEEEEEcccccccccEEEEccccccccccccEEEEEEcccccccHHHHHHHHHcccEEccccccEEEEEccccccEEEEEEEccccHHHHccccEEEEEEcHHHHHHcccccHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHcccccccccccEEEcccHHHHHHHHHHccccEEEEEEEcccHEHccHHcHHHHHHHHHccHHHHHHcccEEEcccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccccc
msvssaslflqpyfrqcpslspsglsffcplssfhisvasgpttatnkpaaavtccvsssqqfeSHVSVVNGnidnriserdeirlglpskgrmaADTLDLLKDCqlsvkqvnprqyvaqipqlsnlevwFQRPKDIVRKLLSgdldlgivgldtvsefgqgnedlIIVHDaldygdcrlslaipkygifeNINSLRELaqmpqwtaekplrvatgftylgpkfmkdnglkhVVFSTAdgaleaapamGIADAILDLVSsgttlrennlkeieggvVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQtsfsglqgpt
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVvngnidnriserdeIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRqyvaqipqlsnlevWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLkeieggvvlesQAVLVAsrkslirrkgvLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERIlsqtsfsglqgpt
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT
**************************FFCPLSSFHISVASG**TATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRI*****IRLGL****RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTV*****************************
***********************************************************************************IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKS*****GVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFSGL****
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASG***********VTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQT*********
*******LFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFSG*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
C1A4M2292 ATP phosphoribosyltransfe yes no 0.684 0.818 0.343 5e-24
C0RKC9231 ATP phosphoribosyltransfe yes no 0.630 0.952 0.326 7e-24
Q8YB47231 ATP phosphoribosyltransfe yes no 0.630 0.952 0.322 9e-24
Q11LA2230 ATP phosphoribosyltransfe yes no 0.584 0.886 0.341 2e-23
A6X3C3231 ATP phosphoribosyltransfe yes no 0.587 0.887 0.330 2e-23
A9WXP5231 ATP phosphoribosyltransfe yes no 0.630 0.952 0.322 2e-23
Q579Q6231 ATP phosphoribosyltransfe yes no 0.630 0.952 0.322 2e-23
Q2YIJ9231 ATP phosphoribosyltransfe yes no 0.630 0.952 0.322 2e-23
B2SCY9231 ATP phosphoribosyltransfe yes no 0.630 0.952 0.322 2e-23
Q64RE6283 ATP phosphoribosyltransfe yes no 0.661 0.816 0.332 3e-23
>sp|C1A4M2|HIS1_GEMAT ATP phosphoribosyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=hisG PE=3 SV=1 Back     alignment and function desciption
 Score =  112 bits (279), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 136/271 (50%), Gaps = 32/271 (11%)

Query: 84  IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
           +R+ LP+KGR++ DT  L  D  L V+    R   A +      E  F R +DI   +  
Sbjct: 2   LRIALPNKGRLSEDTRGLFNDAGLEVRSSGERALTASLG--GEFEAIFVRAQDIPEFVAD 59

Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELA-QM 202
           G  D G+ G D VSE G+     +  H  L +G CRL +A  +      + SL +LA Q 
Sbjct: 60  GAADAGVTGWDLVSESGRE----LTSHLDLGFGRCRLVVAAREDA---GVRSLEDLARQA 112

Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
           P      P+RVAT F  +  +F +  G+   V   + GA E AP +GIAD ++DL S+G+
Sbjct: 113 P------PMRVATVFPNITRRFFEMAGVPVTVVPVS-GAAEIAPHLGIADVVVDLTSTGS 165

Query: 263 TLRENNLKEIEGGVVLESQAVLVAS----RKSLIRRKGVLDATHEILERLEAHLRASGQF 318
           TLR N L+E+E   VL S A L+ +    R   + RK   D   +++  L + +RA GQ 
Sbjct: 166 TLRVNGLREVE--TVLRSSAHLITAVAGPRNGDVSRKQEFD---DLVTALASVIRARGQR 220

Query: 319 TVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
            + AN+      EV + +  +    GL GPT
Sbjct: 221 YLMANV----PREVLDAV--RAVLPGLNGPT 245
Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) (taxid: 379066)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 7
>sp|C0RKC9|HIS1_BRUMB ATP phosphoribosyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q8YB47|HIS1_BRUME ATP phosphoribosyltransferase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q11LA2|HIS1_MESSB ATP phosphoribosyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|A6X3C3|HIS1_OCHA4 ATP phosphoribosyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|A9WXP5|HIS1_BRUSI ATP phosphoribosyltransferase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q579Q6|HIS1_BRUAB ATP phosphoribosyltransferase OS=Brucella abortus biovar 1 (strain 9-941) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q2YIJ9|HIS1_BRUA2 ATP phosphoribosyltransferase OS=Brucella abortus (strain 2308) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|B2SCY9|HIS1_BRUA1 ATP phosphoribosyltransferase OS=Brucella abortus (strain S19) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q64RE6|HIS1_BACFR ATP phosphoribosyltransferase OS=Bacteroides fragilis (strain YCH46) GN=hisG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
225448156390 PREDICTED: ATP phosphoribosyltransferase 0.919 0.823 0.787 1e-150
297739543376 unnamed protein product [Vitis vinifera] 0.842 0.781 0.862 1e-149
449435128395 PREDICTED: ATP phosphoribosyltransferase 0.885 0.782 0.786 1e-142
357480029373 ATP phosphoribosyltransferase [Medicago 0.833 0.780 0.824 1e-142
224146209415 predicted protein [Populus trichocarpa] 0.974 0.819 0.754 1e-139
18391069413 ATP phosphoribosyltransferase [Arabidops 0.896 0.757 0.761 1e-138
21593999413 ATP phosphoribosyl transferase [Arabidop 0.896 0.757 0.761 1e-138
356572383368 PREDICTED: ATP phosphoribosyltransferase 0.773 0.733 0.874 1e-136
297840691408 ATATP-PRT1 [Arabidopsis lyrata subsp. ly 0.851 0.727 0.798 1e-136
363808082373 uncharacterized protein LOC100817490 [Gl 0.773 0.723 0.870 1e-136
>gi|225448156|ref|XP_002264507.1| PREDICTED: ATP phosphoribosyltransferase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/343 (78%), Positives = 293/343 (85%), Gaps = 22/343 (6%)

Query: 7   SLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESH 66
           S+FLQ    QCPSL             F    +S   +A     + V CC+S S      
Sbjct: 2   SMFLQ----QCPSL-------------FTFPSSSPSFSAQISVKSTVFCCLSPSP----- 39

Query: 67  VSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSN 126
           V+VVNGN + R SER+EIRLGLPSKGRMA DTLDLLKDCQLSV+QVNPRQYVA+IPQLSN
Sbjct: 40  VTVVNGNTERRSSERNEIRLGLPSKGRMATDTLDLLKDCQLSVRQVNPRQYVAEIPQLSN 99

Query: 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK 186
           +EVWFQRPKDIVRKLLSGDLDLGIVGLDTV+E+GQGN+DLII HDAL+YGDCRLSLAIPK
Sbjct: 100 MEVWFQRPKDIVRKLLSGDLDLGIVGLDTVTEYGQGNDDLIIAHDALEYGDCRLSLAIPK 159

Query: 187 YGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAP 246
           YGIFENINSL+ELAQMPQWT +KPLRVATGFTYLGPKF+K+NGLKHV FSTADGALEAAP
Sbjct: 160 YGIFENINSLKELAQMPQWTVQKPLRVATGFTYLGPKFLKENGLKHVTFSTADGALEAAP 219

Query: 247 AMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILE 306
           AMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLI+RKGVLD THEILE
Sbjct: 220 AMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIQRKGVLDTTHEILE 279

Query: 307 RLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
           RLEAHLRA  QFTVTANMRG+SAEEVAER+L+Q S SGLQGPT
Sbjct: 280 RLEAHLRAVDQFTVTANMRGSSAEEVAERVLTQPSLSGLQGPT 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739543|emb|CBI29725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435128|ref|XP_004135347.1| PREDICTED: ATP phosphoribosyltransferase-like [Cucumis sativus] gi|449503303|ref|XP_004161935.1| PREDICTED: ATP phosphoribosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357480029|ref|XP_003610300.1| ATP phosphoribosyltransferase [Medicago truncatula] gi|355511355|gb|AES92497.1| ATP phosphoribosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224146209|ref|XP_002325923.1| predicted protein [Populus trichocarpa] gi|222862798|gb|EEF00305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18391069|ref|NP_563853.1| ATP phosphoribosyltransferase [Arabidopsis thaliana] gi|25083351|gb|AAN72065.1| ATP phosphoribosyl transferase [Arabidopsis thaliana] gi|26452034|dbj|BAC43107.1| putative ATP phosphoribosyl transferase AtATP-PRT2 [Arabidopsis thaliana] gi|30725676|gb|AAP37860.1| At1g09795 [Arabidopsis thaliana] gi|332190373|gb|AEE28494.1| ATP phosphoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593999|gb|AAM65917.1| ATP phosphoribosyl transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356572383|ref|XP_003554348.1| PREDICTED: ATP phosphoribosyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|297840691|ref|XP_002888227.1| ATATP-PRT1 [Arabidopsis lyrata subsp. lyrata] gi|297334068|gb|EFH64486.1| ATATP-PRT1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363808082|ref|NP_001242216.1| uncharacterized protein LOC100817490 [Glycine max] gi|255636937|gb|ACU18801.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:505006113413 ATP-PRT2 "ATP phosphoribosyl t 0.919 0.777 0.753 1.1e-124
TAIR|locus:2196287411 ATP-PRT1 "ATP phosphoribosyl t 0.959 0.815 0.722 1.2e-122
TIGR_CMR|CJE_1769299 CJE_1769 "ATP phosphoribosyltr 0.624 0.729 0.309 3.3e-24
TIGR_CMR|CPS_3889300 CPS_3889 "ATP phosphoribosyltr 0.604 0.703 0.337 1.1e-21
TIGR_CMR|SO_2074299 SO_2074 "ATP phosphoribosyltra 0.624 0.729 0.293 3.5e-19
POMBASE|SPAC25G10.05c310 his1 "ATP phosphoribosyltransf 0.661 0.745 0.301 6e-19
ASPGD|ASPL0000017044307 AN3748 [Emericella nidulans (t 0.553 0.628 0.339 1e-18
UNIPROTKB|P60757299 hisG "HisG" [Escherichia coli 0.624 0.729 0.272 4.1e-18
UNIPROTKB|Q9KSX4298 hisG "ATP phosphoribosyltransf 0.530 0.620 0.330 7.1e-18
TIGR_CMR|VC_1132298 VC_1132 "ATP phosphoribosyltra 0.530 0.620 0.330 7.1e-18
TAIR|locus:505006113 ATP-PRT2 "ATP phosphoribosyl transferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 250/332 (75%), Positives = 277/332 (83%)

Query:    19 SLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDN-R 77
             SL PS    F P+ S  +S+    T    +    VT CVS++Q+     SV+NG  D+  
Sbjct:    24 SLVPSS-PLFSPIPSTTVSL----TGIRQRCLRMVTSCVSNAQK-----SVLNGATDSVS 73

Query:    78 ISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDI 137
             +  R++IRLGLPSKGRMAAD+LDLLKDCQL VKQVNPRQYVAQIPQL N EVWFQRPKDI
Sbjct:    74 VVGREQIRLGLPSKGRMAADSLDLLKDCQLFVKQVNPRQYVAQIPQLPNTEVWFQRPKDI 133

Query:   138 VRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLR 197
             VRKLLSGDLDLGIVGLD V EFGQGNEDLIIVH+AL++GDC LSLAIP YGIFENI SL+
Sbjct:   134 VRKLLSGDLDLGIVGLDIVGEFGQGNEDLIIVHEALNFGDCHLSLAIPNYGIFENIKSLK 193

Query:   198 ELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDL 257
             ELAQMPQWT E+PLRVATGFTYLGPKFMKDNG+KHV FSTADGALEAAPAMGIADAILDL
Sbjct:   194 ELAQMPQWTEERPLRVATGFTYLGPKFMKDNGIKHVTFSTADGALEAAPAMGIADAILDL 253

Query:   258 VSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQ 317
             VSSGTTL+ENNLKEIEGGVVLESQA LVASR++L  RKG L+  HEILERLEAHL+A+GQ
Sbjct:   254 VSSGTTLKENNLKEIEGGVVLESQAALVASRRALTERKGALETVHEILERLEAHLKANGQ 313

Query:   318 FTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
             FTV ANMRG  AEEVAER+ +Q S SGLQGPT
Sbjct:   314 FTVVANMRGTDAEEVAERVKTQPSLSGLQGPT 345
GO:0000105 "histidine biosynthetic process" evidence=IEA;ISS;IDA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003879 "ATP phosphoribosyltransferase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006567 "threonine catabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
TAIR|locus:2196287 ATP-PRT1 "ATP phosphoribosyl transferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1769 CJE_1769 "ATP phosphoribosyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3889 CPS_3889 "ATP phosphoribosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2074 SO_2074 "ATP phosphoribosyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
POMBASE|SPAC25G10.05c his1 "ATP phosphoribosyltransferase" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017044 AN3748 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P60757 hisG "HisG" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSX4 hisG "ATP phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1132 VC_1132 "ATP phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.691
4th Layer2.4.2.170.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035413001
SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (390 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037970001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (289 aa)
• •• •• 0.998
GSVIVG00002274001
RecName- Full=Histidinol dehydrogenase; EC=1.1.1.23;; Catalyzes the sequential NAD-dependent ox [...] (438 aa)
• •• •• 0.992
GSVIVG00019988001
RecName- Full=Imidazoleglycerol-phosphate dehydratase; EC=4.2.1.19; (180 aa)
• ••  • 0.974
GSVIVG00027290001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (570 aa)
• ••  • 0.954
GSVIVG00024606001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (288 aa)
• ••  • 0.893
GSVIVG00031801001
SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (269 aa)
• ••  • 0.880
GSVIVG00018977001
RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (322 aa)
     •• 0.833
GSVIVG00015830001
RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (321 aa)
     •• 0.832
GSVIVG00027272001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (403 aa)
•     • 0.786
GSVIVG00023243001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (505 aa)
•     • 0.749

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
PLN02245403 PLN02245, PLN02245, ATP phosphoribosyl transferase 0.0
pfam01634161 pfam01634, HisG, ATP phosphoribosyltransferase 4e-55
PRK00489287 PRK00489, hisG, ATP phosphoribosyltransferase; Rev 3e-54
COG0040290 COG0040, HisG, ATP phosphoribosyltransferase [Amin 1e-51
TIGR00070182 TIGR00070, hisG, ATP phosphoribosyltransferase 8e-50
PRK13583228 PRK13583, hisG, ATP phosphoribosyltransferase cata 5e-34
PRK01686215 PRK01686, hisG, ATP phosphoribosyltransferase cata 8e-31
PRK13584204 PRK13584, hisG, ATP phosphoribosyltransferase cata 5e-06
>gnl|CDD|215136 PLN02245, PLN02245, ATP phosphoribosyl transferase Back     alignment and domain information 
 Score =  586 bits (1512), Expect = 0.0
 Identities = 247/338 (73%), Positives = 269/338 (79%), Gaps = 6/338 (1%)

Query: 12  PYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVN 71
                  S  PS      P SS    + +             T CVS  Q      S  +
Sbjct: 4   LSQSPSLSSLPSSSPLLSPPSSRASRLIAPRRRCL----RLATACVSQVQSSVVAGSTDS 59

Query: 72  GNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWF 131
            +  + +S R +IRLGLPSKGRMA DTLDLLKDCQLSVK+VNPRQYVA+IPQL NLEVWF
Sbjct: 60  AS--SVVSSRTQIRLGLPSKGRMAEDTLDLLKDCQLSVKKVNPRQYVAEIPQLPNLEVWF 117

Query: 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE 191
           QRPKDIVRKLLSGDLDLGIVG D + E+GQGNEDL+IVHDAL +GDC LS+AIPKYGIFE
Sbjct: 118 QRPKDIVRKLLSGDLDLGIVGYDMLREYGQGNEDLVIVHDALGFGDCHLSIAIPKYGIFE 177

Query: 192 NINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIA 251
           NINSL+ELAQMPQWT E+PLRV TGFTYLGPKFMKDNG KHV FSTADGALEAAPAMGIA
Sbjct: 178 NINSLKELAQMPQWTEERPLRVVTGFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGIA 237

Query: 252 DAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAH 311
           DAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASR++L+ RKG L+  HEILERLEAH
Sbjct: 238 DAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRRALLERKGALEVVHEILERLEAH 297

Query: 312 LRASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
           LRA GQFTVTANMRG+SAEEVAER+LSQ S SGLQGPT
Sbjct: 298 LRAEGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPT 335

Length = 403
>gnl|CDD|110621 pfam01634, HisG, ATP phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|234781 PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223118 COG0040, HisG, ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|232809 TIGR00070, hisG, ATP phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|237438 PRK13583, hisG, ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|234971 PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed Back     alignment and domain information
>gnl|CDD|172153 PRK13584, hisG, ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
PLN02245403 ATP phosphoribosyl transferase 100.0
COG0040290 HisG ATP phosphoribosyltransferase [Amino acid tra 100.0
PRK13583228 hisG ATP phosphoribosyltransferase catalytic subun 100.0
PRK01686215 hisG ATP phosphoribosyltransferase catalytic subun 100.0
PRK13584204 hisG ATP phosphoribosyltransferase catalytic subun 100.0
TIGR00070182 hisG ATP phosphoribosyltransferase. Members of thi 100.0
PF01634163 HisG: ATP phosphoribosyltransferase; InterPro: IPR 100.0
KOG2831308 consensus ATP phosphoribosyltransferase [Amino aci 100.0
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 100.0
TIGR03455100 HisG_C-term ATP phosphoribosyltransferase, C-termi 99.13
PF0802975 HisG_C: HisG, C-terminal domain; InterPro: IPR0131 98.36
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 97.5
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 96.96
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 96.91
PRK11480320 tauA taurine transporter substrate binding subunit 96.91
PRK11553314 alkanesulfonate transporter substrate-binding subu 96.85
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 96.84
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 95.17
PF03466209 LysR_substrate: LysR substrate binding domain; Int 94.99
cd00134218 PBPb Bacterial periplasmic transport systems use m 94.43
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 94.18
PRK11063271 metQ DL-methionine transporter substrate-binding s 93.82
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 93.75
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 93.08
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 91.94
TIGR00363258 lipoprotein, YaeC family. This family of putative 90.69
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 90.45
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 87.57
cd08418201 PBP2_TdcA The C-terminal substrate binding domain 86.64
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 86.56
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 86.23
PRK12682309 transcriptional regulator CysB-like protein; Revie 85.73
cd08436194 PBP2_LTTR_like_3 The C-terminal substrate binding 83.76
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 83.3
cd08421198 PBP2_LTTR_like_1 The C-terminal substrate binding 83.0
cd08464200 PBP2_DntR_like_2 The C-terminal substrate binding 82.34
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 82.33
PRK15007243 putative ABC transporter arginine-biding protein; 81.04
cd08442193 PBP2_YofA_SoxR_like The C-terminal substrate bindi 80.18
cd08437198 PBP2_MleR The substrate binding domain of LysR-typ 80.17
>PLN02245 ATP phosphoribosyl transferase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-90  Score=686.43  Aligned_cols=327  Identities=76%  Similarity=1.121  Sum_probs=296.8

Q ss_pred             cccCCCCCCCcccccCCcccceeeccCCCccCCCcccceeeeeccccccccceeeecCCcCCC--CCCCCceEEEecCCC
Q 018852           15 RQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNR--ISERDEIRLGLPSKG   92 (349)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LrIALP~KG   92 (349)
                      .+|++..||++++|+|.++.+++.+. |++   .|++..++|.++.++.    .+.+.....+  ++++.+|||||||||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~LriAlPsKG   78 (403)
T PLN02245          7 SPSLSSLPSSSPLLSPPSSRASRLIA-PRR---RCLRLATACVSQVQSS----VVAGSTDSASSVVSSRTQIRLGLPSKG   78 (403)
T ss_pred             ccccCCccccccccCCCCcCceeeec-chh---hhhhhheeeecccchh----hhcccccccCccccCCceEEEEECCCC
Confidence            44555678999999999998888887 888   7989999998887772    2223333333  688899999999999


Q ss_pred             CchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCC
Q 018852           93 RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDA  172 (349)
Q Consensus        93 RL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~d  172 (349)
                      ||+|++++||++|||++...++|+|++.+++.|+++|+|+||+|||+||++|.+|+||||+|||.|++.+..+++++++|
T Consensus        79 RL~e~t~~LL~~aGl~~~~~~~R~L~~~~~~~~~iev~flR~~DIp~yV~~G~~DlGItG~D~l~E~~~~~~~~v~~l~~  158 (403)
T PLN02245         79 RMAEDTLDLLKDCQLSVKKVNPRQYVAEIPQLPNLEVWFQRPKDIVRKLLSGDLDLGIVGYDMLREYGQGNEDLVIVHDA  158 (403)
T ss_pred             ccHHHHHHHHHHcCCCCCCCCCceeEEEcCCCCceEEEEECHHHHHHHHhCCCccEEEeeeeeeeccCCCccceEEEeec
Confidence            99999999999999999876569999998777889999999999999999999999999999999998776778888889


Q ss_pred             CCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCCCcce
Q 018852          173 LDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIAD  252 (349)
Q Consensus       173 LgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~lGlAD  252 (349)
                      ||||+|||+||+|++..|.++++++||++...|..++++||||||||||++||+++|+++++|++++||||+||.+|+||
T Consensus       159 LgFG~crlvvAvP~~~~~~~~~s~~dL~g~~~~~~~~~~RIATkYp~ltr~ff~~~Gv~~v~Iv~l~GAvE~AP~lGlAD  238 (403)
T PLN02245        159 LGFGDCHLSIAIPKYGIFENINSLKELAQMPQWTEERPLRVVTGFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGIAD  238 (403)
T ss_pred             CCCCceEEEEEEEccCCccccCCHHHhcccccccccCceEEEeCCHHHHHHHHHHcCCCeEEEEECcCceecccccCchh
Confidence            99999999999999866889999999998777777888999999999999999999997699999999999999999999


Q ss_pred             eeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcCeeEEEEecCCCCHHHH
Q 018852          253 AILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEV  332 (349)
Q Consensus       253 ~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~~~~v~~N~p~~~l~~v  332 (349)
                      +||||||||+|||+|||++++||+||+|+|+||+|+.+++.++++++.|++|++||+++++|++|+||+||+|++++++|
T Consensus       239 aIvDIVsTGtTLraNgLk~i~~~~Il~S~A~LIan~~sl~~~~~~~~~i~~ll~rl~~vl~A~~~~~v~~Nvp~~~le~v  318 (403)
T PLN02245        239 AILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRRALLERKGALEVVHEILERLEAHLRAEGQFTVTANMRGSSAEEV  318 (403)
T ss_pred             hhcchhccHHHHHHCCCEEccCceEEEEEEEEEEecchhhcchhHHHHHHHHHHHHHHHHhhhcEEEEEecCChhhHHHH
Confidence            99999999999999999999889999999999999999876555667999999999999999999999999999999999


Q ss_pred             HHHhcccccCCCCCCCC
Q 018852          333 AERILSQTSFSGLQGPT  349 (349)
Q Consensus       333 ~~~~~~~~~lpgl~~PT  349 (349)
                      ++++.+++.+||++|||
T Consensus       319 ~~~~~~~~~lPG~~~PT  335 (403)
T PLN02245        319 AERVLSQPSLSGLQGPT  335 (403)
T ss_pred             HHhhhccccCCCCCCCc
Confidence            99999999999999999

>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed Back     alignment and domain information
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>TIGR00070 hisG ATP phosphoribosyltransferase Back     alignment and domain information
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2 Back     alignment and domain information
>KOG2831 consensus ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain Back     alignment and domain information
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2 Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information
>PRK12682 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
2vd3_A289 The Structure Of Histidine Inhibited Hisg From Meth 3e-22
1h3d_A299 Structure Of The E.Coli Atp-Phosphoribosyltransfera 4e-17
1nh7_A304 Atp Phosphoribosyltransferase (Atp-Prtase) From Myc 2e-13
2vd2_A214 The Crystal Structure Of Hisg From B. Subtilis Leng 2e-11
1z7m_E208 Atp Phosphoribosyl Transferase (hiszg Atp-prtase) F 6e-11
1ve4_A206 Atp-Phosphoribosyltransferase(Hisg) From Thermus Th 2e-09
1usy_H208 Atp Phosphoribosyl Transferase (Hisg:hisz) Complex 9e-08
1usy_E208 Atp Phosphoribosyl Transferase (Hisg:hisz) Complex 2e-07
1o64_A219 Crystal Structure Of An Atp Phosphoribosyltransfera 2e-07
1o63_A219 Crystal Structure Of An Atp Phosphoribosyltransfera 2e-06
>pdb|2VD3|A Chain A, The Structure Of Histidine Inhibited Hisg From Methanobacterium Thermoautotrophicum Length = 289 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 137/267 (51%), Gaps = 28/267 (10%)
Query: 83  EIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLL 142
           +IR+ +PSKGR++   + LL++  + +K    R+  ++  Q   +EV F R  DI   + 
Sbjct: 4   KIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKT-QHPQIEVMFSRAADIPEFVA 62
Query: 143 SGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202
            G  DLGI G D + E G    D+ I+ D L YG   L LA P+       +++R    +
Sbjct: 63  DGAADLGITGYDLIVERGS---DVEILED-LKYGRASLVLAAPED------STIRGPEDI 112
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
           P+        +AT F  +   +++++G+   V     G+ E AP +G+AD I DL S+GT
Sbjct: 113 PRGAV-----IATEFPGITENYLREHGIDAEVVELT-GSTEIAPFIGVADLITDLSSTGT 166
Query: 263 TLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTA 322
           TLR N+L+ I+   +LES   L+A+R+S   + G+++   E+   +   + A G+  V  
Sbjct: 167 TLRMNHLRVID--TILESSVKLIANRESYATKSGIIE---ELRTGIRGVIDAEGKRLVML 221
Query: 323 NMRGNSAEEVAERILSQTSFSGLQGPT 349
           N+   + + V      +    G+ GPT
Sbjct: 222 NIDRKNLDRV------RALMPGMTGPT 242
>pdb|1H3D|A Chain A, Structure Of The E.Coli Atp-Phosphoribosyltransferase Length = 299 Back     alignment and structure
>pdb|1NH7|A Chain A, Atp Phosphoribosyltransferase (Atp-Prtase) From Mycobacterium Tuberculosis Length = 304 Back     alignment and structure
>pdb|2VD2|A Chain A, The Crystal Structure Of Hisg From B. Subtilis Length = 214 Back     alignment and structure
>pdb|1Z7M|E Chain E, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From Lactococcus Lactis Length = 208 Back     alignment and structure
>pdb|1VE4|A Chain A, Atp-Phosphoribosyltransferase(Hisg) From Thermus Thermophilus Hb8 Length = 206 Back     alignment and structure
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From Thermotoga Maritima Length = 208 Back     alignment and structure
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From Thermotoga Maritima Length = 208 Back     alignment and structure
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase Length = 219 Back     alignment and structure
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase Length = 219 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1h3d_A299 ATP-phosphoribosyltransferase; hisitidine biosynth 2e-79
2vd3_A289 ATP phosphoribosyltransferase; metal-binding, glyc 2e-77
1nh8_A304 ATP phosphoribosyltransferase; prtase, de novo His 2e-71
1ve4_A206 ATP phosphoribosyltransferase; riken structural ge 5e-54
2vd2_A214 ATP phosphoribosyltransferase; HISG, glycosyltrans 1e-51
1o63_A219 ATP phosphoribosyltransferase; structural genomics 4e-51
1z7m_E208 ATP phosphoribosyltransferase; ATP-PRT, histidine 1e-50
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 2e-04
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Length = 299 Back     alignment and structure
 Score =  243 bits (623), Expect = 2e-79
 Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 30/276 (10%)

Query: 79  SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIV 138
           ++   +R+ +   GR++ D+ +LL  C + +  ++ ++ +A    +  +++   R  DI 
Sbjct: 2   TDNTRLRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIP 59

Query: 139 RKLLSGDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENI 193
             ++ G +DLGI+G + + E       QG +        LD+G CRLSLA P    ++  
Sbjct: 60  GLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGP 119

Query: 194 NSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADA 253
            SL               R+AT + +L  +++   G+        +G++E AP  G+ADA
Sbjct: 120 LSLNGK------------RIATSYPHLLKRYLDQKGISFKSC-LLNGSVEVAPRAGLADA 166

Query: 254 ILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313
           I DLVS+G TL  N L+E+E  V+  S+A L+     +   K       ++L R++  ++
Sbjct: 167 ICDLVSTGATLEANGLREVE--VIYRSKACLIQRDGEMEESKQ--QLIDKLLTRIQGVIQ 222

Query: 314 ASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
           A     +  +      +EV   +L      G + PT
Sbjct: 223 ARESKYIMMHAPTERLDEVIA-LL-----PGAERPT 252
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Length = 289 Back     alignment and structure
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Length = 304 Back     alignment and structure
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Length = 206 Back     alignment and structure
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis} Length = 214 Back     alignment and structure
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Length = 219 Back     alignment and structure
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Length = 208 Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Length = 321 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
2vd3_A289 ATP phosphoribosyltransferase; metal-binding, glyc 100.0
1h3d_A299 ATP-phosphoribosyltransferase; hisitidine biosynth 100.0
1nh8_A304 ATP phosphoribosyltransferase; prtase, de novo His 100.0
2vd2_A214 ATP phosphoribosyltransferase; HISG, glycosyltrans 100.0
1ve4_A206 ATP phosphoribosyltransferase; riken structural ge 100.0
1z7m_E208 ATP phosphoribosyltransferase; ATP-PRT, histidine 100.0
1o63_A219 ATP phosphoribosyltransferase; structural genomics 100.0
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 97.83
3qsl_A346 Putative exported protein; unknown, structural gen 97.83
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 97.01
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 97.0
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 96.94
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 96.89
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 96.83
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 96.75
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 96.56
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 96.52
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 96.51
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 96.47
4esw_A342 Pyrimidine biosynthesis enzyme THI13; thiamin pyri 96.41
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 96.2
3kzg_A237 Arginine 3RD transport system periplasmic binding 96.18
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 96.13
1xt8_A292 Putative amino-acid transporter periplasmic solut 95.99
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 95.95
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 95.93
2yln_A283 Putative ABC transporter, periplasmic binding Pro 95.81
2vha_A287 Periplasmic binding transport protein; periplasmic 95.73
3tql_A227 Arginine-binding protein; transport and binding pr 95.13
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 95.03
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 94.81
4ab5_A222 Transcriptional regulator, LYSR family; transcript 94.56
3hv1_A268 Polar amino acid ABC uptake transporter substrate 94.51
3del_B242 Arginine binding protein; alpha and beta protein ( 94.07
2czl_A272 Hypothetical protein TTHA1568; conserved hypotheti 94.03
3ho7_A232 OXYR; beta-alpha-barrels, DNA-binding, transcripti 93.83
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 93.81
2pfy_A301 Putative exported protein; extracytoplasmic solute 93.61
2de3_A365 Dibenzothiophene desulfurization enzyme B; alpha-b 93.46
2pfz_A301 Putative exported protein; extracytoplasmic solute 93.4
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 93.37
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 93.24
2zzv_A361 ABC transporter, solute-binding protein; periplasm 92.83
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 92.69
4eq9_A246 ABC transporter substrate-binding protein-amino A 92.63
3k4u_A245 Binding component of ABC transporter; structural g 92.55
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 92.51
3qax_A268 Probable ABC transporter arginine-binding protein; 92.39
2q88_A257 EHUB, putative ABC transporter amino acid-binding 92.17
2nxo_A291 Hypothetical protein SCO4506; PFAM, DUF178, NYSGXR 92.02
3hn0_A283 Nitrate transport protein; ABC transporter, struct 92.0
2hzl_A365 Trap-T family sorbitol/mannitol transporter, perip 91.23
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 91.2
2g29_A 417 Nitrate transport protein NRTA; solute-binding pro 91.19
2vpn_A316 Periplasmic substrate binding protein; ectoine, hy 90.27
3fxq_A305 LYSR type regulator of TSAMBCD; transcriptional re 89.8
1us5_A314 Putative GLUR0 ligand binding core; receptor, memb 89.78
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 89.03
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 89.02
2hpg_A327 ABC transporter, periplasmic substrate-binding pro 88.37
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 88.18
1p99_A295 Hypothetical protein PG110; structural genomics, P 88.13
4ef1_A246 Pheromone COB1/lipoprotein, YAEC family; periplasm 88.05
3tmg_A280 Glycine betaine, L-proline ABC transporter, glycin 85.63
2i49_A 429 Bicarbonate transporter; alpha-beta protein, C-cla 84.36
2esn_A310 Probable transcriptional regulator; PA0477, APC582 83.42
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 82.82
2f5x_A312 BUGD; periplasmic binding protein, transport prote 81.52
1uth_A315 LYSR-type regulatory protein; transcription regula 81.51
3tqw_A240 Methionine-binding protein; transport and binding 80.97
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 80.92
4got_A249 Methionine-binding lipoprotein METQ; NLPA lipoprot 80.89
2y7p_A218 LYSR-type regulatory protein; transcription regula 80.1
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Back     alignment and structure
Probab=100.00  E-value=5.6e-80  Score=591.38  Aligned_cols=240  Identities=31%  Similarity=0.534  Sum_probs=221.9

Q ss_pred             CceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccCC
Q 018852           82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ  161 (349)
Q Consensus        82 ~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~  161 (349)
                      +||||||||||||++++++||++|||++...++|+|++.+++ ++++|+|+||+|||+||++|.+|+||||+|||.|++.
T Consensus         3 ~mL~iAlpkkGRL~e~t~~ll~~aGi~~~~~~~R~l~~~~~~-~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~   81 (289)
T 2vd3_A            3 PKIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKTQH-PQIEVMFSRAADIPEFVADGAADLGITGYDLIVERGS   81 (289)
T ss_dssp             CCEEEEEESSSTTHHHHHHHHHHTTCCEESCCTTCSEEEESS-TTEEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHCCCCCCCCCCceeEEEcCC-CCEEEEEEChhhHHHHHhCCCccEEEeeeeeeeecCC
Confidence            479999998899999999999999999988656999999875 6899999999999999999999999999999999985


Q ss_pred             CCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCc
Q 018852          162 GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA  241 (349)
Q Consensus       162 ~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GS  241 (349)
                      +   ++++ .|||||+|||+||+|++  | ++++++||..        ++||||||||+|++||+++|++ ++||+++||
T Consensus        82 ~---v~el-~dLgfG~crl~vAvp~~--~-~~~~~~~l~~--------~~RIATkyp~l~~~yf~~~gi~-~~ii~l~Gs  145 (289)
T 2vd3_A           82 D---VEIL-EDLKYGRASLVLAAPED--S-TIRGPEDIPR--------GAVIATEFPGITENYLREHGID-AEVVELTGS  145 (289)
T ss_dssp             C---CEEE-EECSCSCEEEEEEEETT--S-SCCSGGGCCT--------TCEEEESCHHHHHHHHHHTTCC-CEEEECSSC
T ss_pred             C---ceEE-ecCCCCCEEEEEEEECC--C-CCCCHHHhcC--------CCEEEeCcHHHHHHHHHHcCCc-EEEEECCCc
Confidence            4   4444 48999999999999998  3 6667777621        4899999999999999999996 899999999


Q ss_pred             cccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcCeeEEE
Q 018852          242 LEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVT  321 (349)
Q Consensus       242 vElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~~~~v~  321 (349)
                      +|+||.+|+||+||||||||+|||+|||++++  +|++|+|+||+|+.+++.|+   +.|++|++||+++++|++|+||+
T Consensus       146 vE~ap~~GlADaIvDivsTG~TLraNgL~~ie--~I~~ssA~LI~n~~s~~~k~---~~i~~l~~rl~~v~~A~~~~~~~  220 (289)
T 2vd3_A          146 TEIAPFIGVADLITDLSSTGTTLRMNHLRVID--TILESSVKLIANRESYATKS---GIIEELRTGIRGVIDAEGKRLVM  220 (289)
T ss_dssp             GGGTTTTTSCSEEEEEESSTHHHHHTTEEEEE--EEEEECEEEEECHHHHHHSH---HHHHHHHHHHHHHHHTTTEEEEE
T ss_pred             eeeccCCCcccEEEEEeCChHHHHHCCCEEeE--EEEeeEEEEEEccchhhhHH---HHHHHHHHHHHHHHHhccEEEEE
Confidence            99999999999999999999999999999998  99999999999999986543   78999999999999999999999


Q ss_pred             EecCCCCHHHHHHHhcccccCCCCCCCC
Q 018852          322 ANMRGNSAEEVAERILSQTSFSGLQGPT  349 (349)
Q Consensus       322 ~N~p~~~l~~v~~~~~~~~~lpgl~~PT  349 (349)
                      ||+|+++++++.++      |||+++||
T Consensus       221 ~n~p~~~l~~v~~~------lPg~~~PT  242 (289)
T 2vd3_A          221 LNIDRKNLDRVRAL------MPGMTGPT  242 (289)
T ss_dssp             EEEEGGGHHHHHHH------CCCSSSCE
T ss_pred             EeCCHHHHHHHHHh------cccCCCCc
Confidence            99999999999995      99999998
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Back     alignment and structure
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Back     alignment and structure
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis} Back     alignment and structure
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Back     alignment and structure
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Back     alignment and structure
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Back     alignment and structure
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1 Back     alignment and structure
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis} Back     alignment and structure
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A Back     alignment and structure
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Back     alignment and structure
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A* Back     alignment and structure
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi} Back     alignment and structure
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A Back     alignment and structure
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Back     alignment and structure
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii} Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp} Back     alignment and structure
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1h3da1220 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase ( 2e-45
d1z7me1204 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase ( 4e-42
d1nh8a1210 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase ( 3e-38
d1ve4a1206 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase ( 6e-38
d1o63a_203 c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-P 3e-33
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]} Length = 220 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score =  152 bits (385), Expect = 2e-45
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 24/236 (10%)

Query: 84  IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
           +R+ +   GR++ D+ +LL  C + +  ++ ++ +A    +  +++   R  DI   ++ 
Sbjct: 3   LRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIPGLVMD 60

Query: 144 GDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRE 198
           G +DLGI+G + + E       QG +        LD+G CRLSLA P    ++   SL  
Sbjct: 61  GVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLN- 119

Query: 199 LAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLV 258
                        R+AT + +L  +++   G         +G++E AP  G+ADAI DLV
Sbjct: 120 -----------GKRIATSYPHLLKRYLDQKG-ISFKSCLLNGSVEVAPRAGLADAICDLV 167

Query: 259 SSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
           S+G TL  N L+E+E  V+  S+A L+     +   K       ++L R++  ++A
Sbjct: 168 STGATLEANGLREVE--VIYRSKACLIQRDGEMEESK--QQLIDKLLTRIQGVIQA 219
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]} Length = 204 Back     information, alignment and structure
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 210 Back     information, alignment and structure
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 206 Back     information, alignment and structure
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1h3da1220 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1ve4a1206 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1nh8a1210 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1z7me1204 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1o63a_203 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1h3da275 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 97.98
d1nh8a274 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 97.75
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 92.53
d2nxoa1277 Hypothetical protein SCo4506 {Streptomyces coelico 92.33
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 89.11
d1i6aa_212 Hydrogen peroxide-inducible genes LysR-type activa 88.21
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 86.77
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 85.66
d1al3a_237 Cofactor-binding fragment of LysR-type protein Cys 80.08
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.6e-69  Score=494.74  Aligned_cols=214  Identities=29%  Similarity=0.502  Sum_probs=190.4

Q ss_pred             CceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccCC
Q 018852           82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ  161 (349)
Q Consensus        82 ~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~  161 (349)
                      .+|||||||||||+++++++|++|||++.. .+|+|++.+.+ ++++++|+||+|||+||++|.+|+||||+||+.|++.
T Consensus         1 skl~iAlPkkGRL~~~~~~ll~~~G~~~~~-~~r~~~~~~~~-~~i~~~~~r~~DIp~~V~~G~~DlGItG~D~l~E~~~   78 (220)
T d1h3da1           1 TRLRIAMQKSGRLSDDSRELLARCGIKINL-HTQRLIAMAEN-MPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELL   78 (220)
T ss_dssp             CCEEEEEESSSTTHHHHHHHHHHTTCCCCC-SSSCSEEECSS-SSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHHHH
T ss_pred             CCEEEEEcCCCccHHHHHHHHHHCCCCCCC-CCcceeeecCC-CCEEEEEEChHHHHHHHHhccCcccchhHHHHHhhcc
Confidence            369999998899999999999999999876 57889999876 4599999999999999999999999999999999753


Q ss_pred             C------CccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEE
Q 018852          162 G------NEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVF  235 (349)
Q Consensus       162 ~------~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~I  235 (349)
                      +      ..+++ .+.|||||+|||++|+|.+..   +.+++++.         ++||||||||||++||+++|++ ++|
T Consensus        79 ~~~~~~~~~~v~-~l~dL~fG~crLvvA~p~~~~---~~~~~~~~---------~~RIATkYp~it~~y~~~~gi~-~~i  144 (220)
T d1h3da1          79 NRRAQGEDPRYF-TLRRLDFGGCRLSLATPVDEA---WDGPLSLN---------GKRIATSYPHLLKRYLDQKGIS-FKS  144 (220)
T ss_dssp             HHHHHTCCCCEE-EEEECSCCCEEEEEEEETTSC---CCCGGGGT---------TCEEEESCHHHHHHHHHHHTCC-CEE
T ss_pred             cchhccCCcceE-EEEecccCceeEEEecccccc---ccChhHcC---------CCEEhhhhhHHHHHHHHhcccc-cee
Confidence            2      12344 446999999999999999843   44455544         3799999999999999999996 899


Q ss_pred             EecCCccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhc
Q 018852          236 STADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRAS  315 (349)
Q Consensus       236 i~l~GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar  315 (349)
                      |+++||+|+||.+|+||+||||||||+|||+|||++++  +||+|+|+||+|+.++..+  +.+.|++|+++|+++++||
T Consensus       145 i~~~Ga~E~ap~~g~AD~IvDiv~TG~TLk~NgLk~id--~Il~SsA~LI~n~~s~~~~--~~~~i~~l~~~l~~vl~ar  220 (220)
T d1h3da1         145 CLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVE--VIYRSKACLIQRDGEMEES--KQQLIDKLLTRIQGVIQAR  220 (220)
T ss_dssp             EECSSCTTHHHHTTSCSEEEEEESSCHHHHHTTEEEEE--EEEEECEEEEEESSCCCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccceecCCCeeEEEEeccchHHHHHCcCEEee--EEEEEEEEEEEeccccChh--HHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999  9999999999999998653  3478999999999999986
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h3da2 d.58.5.3 (A:225-299) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure