Citrus Sinensis ID: 018853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQIF
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccEEEEccccccccccccccccHHcccccccEEEEEEEcEEEEEEEEEEEccccEEEcccccEEEEEEEEEEEcccEEEEEEccEEEcccccccccccccccccccccccccccEEEEccccEEEEccEEcccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccEEEccccEEEEcccccEEEEEcEEEEcccccccccEEEEcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHcccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEccccEEEccccccccEEEEEcc
MLLNTCILLECLFFLIFSSSatisslnltlphqhpdpdavaQDVQRRVNVSLSRRQALAINAqcqtgnpiddcwhcdpnwaanRQRLAdcsvgfaqgtlggkggqiyvvtdssdsdpanptpgtlrhaviqtEPIWITFASNMLIKLKHELIINSYktidgrganveitgnGCLTLQYVSHVIIHNvhihhckpsgntmiasspthvgyrgksdgdgisifgsqkiwvdhcslsyctdglidaimgstgitisnnyfsHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQrmprcrrgyihvvnndftSWEMYAiggsanptinsqgnrytappddnaKEVYFQIF
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSanptinsqgnrytappddnAKEVYFQIF
MLLNTcilleclfflifsssATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYvshviihnvhihhCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQIF
**LNTCILLECLFFLIFSSSATISSLNLTL*****************VNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVT**************LRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGS****************************
***NTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQR******************QTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAK*VYFQIF
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQIF
*LLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQIF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q93Z04 501 Probable pectate lyase 13 no no 0.899 0.626 0.713 1e-140
Q9SCP2 483 Probable pectate lyase 12 no no 0.982 0.710 0.708 1e-137
Q93Z25432 Probable pectate lyase 22 no no 0.939 0.759 0.629 1e-125
Q940Q1431 Probable pectate lyase 1 no no 0.977 0.791 0.596 1e-123
Q944R1470 Probable pectate lyase 15 no no 0.896 0.665 0.628 1e-122
Q9FXD8408 Probable pectate lyase 5 no no 0.873 0.747 0.660 1e-122
Q9M8Z8416 Probable pectate lyase 8 no no 0.962 0.807 0.592 1e-121
Q9C5M8408 Probable pectate lyase 18 no no 0.942 0.806 0.611 1e-117
Q9LJ42440 Probable pectate lyase 10 no no 0.902 0.715 0.608 1e-116
Q9LRM5452 Probable pectate lyase 9 no no 0.936 0.723 0.586 1e-116
>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 Back     alignment and function desciption
 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/335 (71%), Positives = 273/335 (81%), Gaps = 21/335 (6%)

Query: 26  LNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQ-----------ALAINAQCQTGNPIDDCW 74
           LNLTLPHQHP PD+VA  V R VN SL+RRQ           + + ++ C+TGNPIDDCW
Sbjct: 26  LNLTLPHQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSSSSCRTGNPIDDCW 85

Query: 75  HC-DPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTE 133
            C D +W+ NRQRLADCS+GF  GTLGGK G+IYVVTDSSD++P NPTPGTLR+ VIQ E
Sbjct: 86  RCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEE 145

Query: 134 PIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCK 193
           P+WI F+SNMLI+LK ELIINSYKT+DGRG+ V ITGNGCLTLQYV H+IIHN+HI+ CK
Sbjct: 146 PLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCK 205

Query: 194 PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253
           PS              RG+SDGDGISIFGSQKIWVDHCS+S+CTDGLIDA+MGST ITIS
Sbjct: 206 PSAG---------FEKRGRSDGDGISIFGSQKIWVDHCSMSHCTDGLIDAVMGSTAITIS 256

Query: 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSW 313
           NNYF+HH+EVMLLGH+D YA D GMQVTIAFNHFG  LVQRMPRCRRGYIHVVNNDFT W
Sbjct: 257 NNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEW 316

Query: 314 EMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI 348
           +MYAIGGS NPTINSQGNRY+AP D +AKEV  ++
Sbjct: 317 KMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRV 351
Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
315272010 496 pectate lyase-like protein 1 [Vitis vini 0.997 0.701 0.764 1e-158
225448952 496 PREDICTED: probable pectate lyase 12 [Vi 0.997 0.701 0.761 1e-157
255586803 503 Pectate lyase precursor, putative [Ricin 0.977 0.677 0.813 1e-155
224113127415 predicted protein [Populus trichocarpa] 0.979 0.824 0.799 1e-152
224097734356 predicted protein [Populus trichocarpa] 0.982 0.963 0.789 1e-149
356575512 502 PREDICTED: probable pectate lyase 12-lik 0.988 0.687 0.731 1e-146
449449503411 PREDICTED: probable pectate lyase 13-lik 0.896 0.761 0.762 1e-146
449465310 489 PREDICTED: probable pectate lyase 12-lik 0.954 0.680 0.720 1e-145
449532741418 PREDICTED: LOW QUALITY PROTEIN: probable 0.954 0.796 0.720 1e-145
356534388 676 PREDICTED: probable pectate lyase 12-lik 0.997 0.514 0.725 1e-144
>gi|315272010|gb|ADU02586.1| pectate lyase-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/352 (76%), Positives = 300/352 (85%), Gaps = 4/352 (1%)

Query: 1   MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAI 60
           ML NTCILL CL   +        +LNLTLPHQHP+P+ V  +VQRR+NVS+SRRQ L++
Sbjct: 1   MLPNTCILLLCLLCSLSPLIRATLNLNLTLPHQHPNPEVVVDEVQRRLNVSISRRQVLSV 60

Query: 61  N----AQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSD 116
                + C TGNP+DDCW CDPNW  NRQRLADC +GF Q  +GGKGGQ YVVTDSSD D
Sbjct: 61  QENDGSSCLTGNPVDDCWRCDPNWQNNRQRLADCGIGFGQDAMGGKGGQFYVVTDSSDED 120

Query: 117 PANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTL 176
           P NP PGTLRHAVIQT+P+WITF++NMLIKLK+ELI+NS+KTIDGRGANV ITG GC+TL
Sbjct: 121 PINPAPGTLRHAVIQTQPLWITFSTNMLIKLKYELIVNSFKTIDGRGANVHITGRGCMTL 180

Query: 177 QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC 236
           QYVS+VIIH VH+HHC PSGN  I SSPTHVG+RGKSDGDGISIFGS+KIW+DHCSLSYC
Sbjct: 181 QYVSNVIIHGVHVHHCVPSGNADIRSSPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYC 240

Query: 237 TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMP 296
            DGLIDAIMGSTGITISNNYFSHH+EVMLLGH+DKY+ D GMQVTIAFNHFG  LVQRMP
Sbjct: 241 RDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYSPDSGMQVTIAFNHFGEGLVQRMP 300

Query: 297 RCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI 348
           RCRRGYIHVVNNDFT WEMYAIGGSANPTINSQGNRYTAP D NAKEV  ++
Sbjct: 301 RCRRGYIHVVNNDFTRWEMYAIGGSANPTINSQGNRYTAPGDINAKEVTKRV 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448952|ref|XP_002268818.1| PREDICTED: probable pectate lyase 12 [Vitis vinifera] gi|296085972|emb|CBI31413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586803|ref|XP_002534016.1| Pectate lyase precursor, putative [Ricinus communis] gi|223525981|gb|EEF28369.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224113127|ref|XP_002316399.1| predicted protein [Populus trichocarpa] gi|222865439|gb|EEF02570.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097734|ref|XP_002311060.1| predicted protein [Populus trichocarpa] gi|222850880|gb|EEE88427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575512|ref|XP_003555884.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|449449503|ref|XP_004142504.1| PREDICTED: probable pectate lyase 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465310|ref|XP_004150371.1| PREDICTED: probable pectate lyase 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449532741|ref|XP_004173339.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase 12-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534388|ref|XP_003535737.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:2179949 518 AT5G04310 [Arabidopsis thalian 0.919 0.619 0.716 3.1e-131
TAIR|locus:2101998 483 AT3G53190 [Arabidopsis thalian 0.919 0.664 0.706 3.9e-124
TAIR|locus:2082667 501 PMR6 "powdery mildew resistant 0.888 0.618 0.697 3.5e-123
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.908 0.733 0.619 1.1e-110
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.873 0.747 0.637 2.6e-109
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.885 0.757 0.616 2.6e-109
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.893 0.723 0.613 3.4e-109
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.885 0.657 0.614 1.7e-107
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.891 0.747 0.609 7.2e-107
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.891 0.745 0.596 5.8e-105
TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
 Identities = 238/332 (71%), Positives = 265/332 (79%)

Query:    24 SSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQ-----------CQTGNPIDD 72
             S  NL+LPHQHP P+ V  +VQR++N SLSRRQ L                C TGNPIDD
Sbjct:    40 SIFNLSLPHQHPFPEHVVLNVQRKLNDSLSRRQLLTYQQDDGTTASSPIPSCITGNPIDD 99

Query:    73 CWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQT 132
             CW CDPNW+ANRQRLADCS+GF QGTLGGKGGQ Y+VTDSSD+D ANP PGTLRHAVIQ 
Sbjct:   100 CWRCDPNWSANRQRLADCSIGFGQGTLGGKGGQFYLVTDSSDNDAANPIPGTLRHAVIQP 159

Query:   133 EPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXC 192
             EP+WI F+S+M IKLKHELII SYKTIDGRG N++ITG+GCLT+Q              C
Sbjct:   160 EPLWIIFSSDMGIKLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHC 219

Query:   193 KPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252
             KPSGNT++ASSPTHVG+RG SDGDGIS+  S  IWVDHCSL YC DGLID I+ ST +TI
Sbjct:   220 KPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWVDHCSLGYCADGLIDVILASTAVTI 279

Query:   253 SNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTS 312
             SNNYFSHH+EVMLLGH+D+Y  D GMQVTIAFNHFG  LVQRMPRCR GYIHVVNNDFT+
Sbjct:   280 SNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTA 339

Query:   313 WEMYAIGGSANPTINSQGNRYTAPPDDNAKEV 344
             WEMYAIGGSA+PTINSQGNRYTAP D NAKEV
Sbjct:   340 WEMYAIGGSASPTINSQGNRYTAPIDPNAKEV 371
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2101998 AT3G53190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!
4th Layer4.2.2.20.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VIII.1321.1
hypothetical protein (354 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.232.70.1
annotation not avaliable (213 aa)
  •     0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
smart00656190 smart00656, Amb_all, Amb_all domain 2e-77
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 1e-67
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 4e-30
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  235 bits (601), Expect = 2e-77
 Identities = 105/207 (50%), Positives = 125/207 (60%), Gaps = 28/207 (13%)

Query: 142 NMLIKLK--HELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTM 199
           ++ I L     +IINS KTIDGRG+ VEI G G LT++ VS+VII N+ IH  KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKG-GGLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 200 IASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCT---------DGLIDAIMGSTGI 250
                        SDGD ISI GS  +W+DH SLS CT         DGLID   GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 251 TISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
           TISNNYF +H +VMLLGH+D    D  M+VTIA N+FG  L QR PR R GY+HV NN +
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 311 TSWEMYAIGGSANPTINSQGNRYTAPP 337
           T W  YAIGG    TI S+GN + AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.84
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.31
PLN02218431 polygalacturonase ADPG 98.31
PLN03003 456 Probable polygalacturonase At3g15720 98.29
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.21
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.18
PLN02793443 Probable polygalacturonase 98.07
PLN02155394 polygalacturonase 98.01
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.0
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.99
PLN03010409 polygalacturonase 97.91
PLN02218431 polygalacturonase ADPG 97.72
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.59
PLN02480343 Probable pectinesterase 97.45
PLN03010409 polygalacturonase 97.39
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.35
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.32
PLN02197588 pectinesterase 97.31
PLN03003 456 Probable polygalacturonase At3g15720 97.29
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.28
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.25
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.2
PLN02155394 polygalacturonase 97.14
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.11
PLN02176340 putative pectinesterase 97.02
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 96.95
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.92
PLN02793 443 Probable polygalacturonase 96.84
PLN02773317 pectinesterase 96.76
PLN02665366 pectinesterase family protein 96.7
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.69
PLN02682369 pectinesterase family protein 96.45
smart00656190 Amb_all Amb_all domain. 96.38
PLN02304379 probable pectinesterase 96.22
PLN02432293 putative pectinesterase 96.21
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.02
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.96
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.93
PLN02188404 polygalacturonase/glycoside hydrolase family prote 95.92
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.92
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.9
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.88
PLN02916502 pectinesterase family protein 95.87
PLN02497331 probable pectinesterase 95.84
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.77
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.76
PLN02634359 probable pectinesterase 95.76
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.75
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.73
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.69
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.64
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.56
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.51
PLN02671359 pectinesterase 95.51
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.46
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.42
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.41
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.4
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 95.37
PLN02314586 pectinesterase 95.35
PLN02301548 pectinesterase/pectinesterase inhibitor 95.33
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.28
PRK10531422 acyl-CoA thioesterase; Provisional 94.05
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.78
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 91.73
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 83.44
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 82.66
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 81.3
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 80.82
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 80.51
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.2e-52  Score=393.96  Aligned_cols=216  Identities=34%  Similarity=0.466  Sum_probs=189.3

Q ss_pred             CCCCCCCCceEEEcCCCCCCCCCCCChhHHHHhhcCCCeEEEEecCeEEEec------ceEEecCCceEEeeCceEEEEe
Q 018853           97 GTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLK------HELIINSYKTIDGRGANVEITG  170 (349)
Q Consensus        97 ~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~i~snkTI~G~ga~i~I~G  170 (349)
                      +||||.||.+++|++.+|          |..++.+.+|.+++.-+.|+|.+.      .+|.+.|||||.|.|++.+|.|
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g  116 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVG  116 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEe
Confidence            799999999999999987          577888889986666667889887      5677899999999999999999


Q ss_pred             ccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEe-eCCceEEEEeeEEec--------CCCCee
Q 018853          171 NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI-FGSQKIWVDHCSLSY--------CTDGLI  241 (349)
Q Consensus       171 ~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi-~gs~nVWIDHcS~s~--------~~Dgli  241 (349)
                      +| |.|+.+.|||||||+|++... ++               ...|+|+| .+++|||||||+|+.        ..||++
T Consensus       117 ~g-l~i~~a~NVIirNltf~~~~~-~d---------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         117 GG-LKIRDAGNVIIRNLTFEGFYQ-GD---------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             ce-EEEEeCCcEEEEeeEEEeecc-CC---------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            99 999899999999999998641 11               12599999 579999999999999        689999


Q ss_pred             eeeeCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCCcCcCcccCCCeEEEEcceEeCCc--ceEE
Q 018853          242 DAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWE--MYAI  318 (349)
Q Consensus       242 d~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~~~R~Pr~R~G~~HvvNN~~~~~~--~yai  318 (349)
                      |++.++++||||||+|++|+|.+|+|.+|+...+.+ .+||+||||| +|+.||+||+|||.+||+||||....  .||+
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence            999999999999999999999999999998665555 8999999999 58999999999999999999999665  4566


Q ss_pred             ecCCCceEEEEcceEeCCCCCC
Q 018853          319 GGSANPTINSQGNRYTAPPDDN  340 (349)
Q Consensus       319 gg~~~~~i~~egN~F~~~~~~~  340 (349)
                      +-+..++|++|+|||+....+.
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~  280 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGL  280 (345)
T ss_pred             eeccceEEEEecceeccCCCCc
Confidence            6555699999999999965543

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-75
3zsc_A340 Catalytic Function And Substrate Recognition Of The 4e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 5e-11
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 2e-10
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 4e-10
3krg_A399 Structural Insights Into Substrate Specificity And 5e-10
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 6e-10
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 9e-10
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 3e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 7e-08
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 1e-07
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 7e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 7e-07
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 3e-06
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/289 (50%), Positives = 186/289 (64%), Gaps = 15/289 (5%)
Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT S+D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXX 185
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V + GNG  CL ++        
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHL-GNGGPCLFMRKVSHVILH 119
Query: 186 XXXXXXCKPS--GNTMIASS----PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDG 239
                 C  S  G+ +++ S    P H       DGD I++      W+DH SLS C+DG
Sbjct: 120 SLHIHGCNTSVLGDVLVSESIGVEPVHA-----QDGDAITMRNVTNAWIDHNSLSDCSDG 174
Query: 240 LIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299
           LID  +GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R
Sbjct: 175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRAR 234
Query: 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI 348
            G +HV NN++  W +YAIGGS+NPTI S+GN +TAP +   KEV  +I
Sbjct: 235 YGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI 283
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-116
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 1e-85
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 4e-75
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-73
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 5e-70
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 4e-65
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 1e-62
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 1e-62
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 3e-62
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 5e-56
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 6e-53
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-05
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  339 bits (870), Expect = e-116
 Identities = 149/283 (52%), Positives = 191/283 (67%), Gaps = 3/283 (1%)

Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT + D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHN 186
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V +   G CL ++ VSHVI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 187 VHIHHCKPSGNTMIASSPT-HVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245
           +HIH C  S    +  S +  V      DGD I++      W+DH SLS C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 246 GSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHV 305
           GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 306 VNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI 348
            NN++  W +YAIGGS+NPTI S+GN +TAP +   KEV  +I
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI 283
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.64
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.46
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.26
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.23
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.13
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.1
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.99
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.99
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.96
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.95
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.94
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.9
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.82
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.82
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.81
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.79
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.76
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.7
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.69
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.68
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.67
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.58
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.49
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.38
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.34
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.34
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.33
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.25
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.19
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.17
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.06
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 97.06
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.04
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.02
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 96.93
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.89
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.79
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.64
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.32
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.32
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.29
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.01
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.79
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.37
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 95.35
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.23
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.03
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 93.89
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 93.51
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.11
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.01
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 92.15
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 91.46
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 84.17
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 82.74
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=1.3e-89  Score=673.94  Aligned_cols=282  Identities=52%  Similarity=0.908  Sum_probs=269.7

Q ss_pred             CCceeeecccCccccccccccccCCcCccCCCCCCCCCceEEEcCCCCCCCCCCCChhHHHHhhcCCCeEEEEecCeEEE
Q 018853           67 GNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIK  146 (349)
Q Consensus        67 ~np~d~~wr~~~~w~~~~~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~  146 (349)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+||++++|+||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999877 5799999999999999999999999999999


Q ss_pred             ecceEEecCCceEEeeCceEEEEe-ccEEEEeeeccEEEEeeEEEeeccCCCccc-cCCCCccccCCCCCCCcEEeeCCc
Q 018853          147 LKHELIINSYKTIDGRGANVEITG-NGCLTLQYVSHVIIHNVHIHHCKPSGNTMI-ASSPTHVGYRGKSDGDGISIFGSQ  224 (349)
Q Consensus       147 L~~~L~i~snkTI~G~ga~i~I~G-~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v-~~~~~~~G~r~~~dgDaIsi~gs~  224 (349)
                      |+++|+|+|||||+|||++++|.| +.+|++++++|||||||+|+++.|.+++.| |+++.|+|.+...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999998 336999999999999999999998888777 999999999888999999999999


Q ss_pred             eEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccCCCeEE
Q 018853          225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIH  304 (349)
Q Consensus       225 nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R~G~~H  304 (349)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|++..|+.++||+|||+|+.++.+|+||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998877777999999999965899999999999999


Q ss_pred             EEcceEeCCcceEEecCCCceEEEEcceEeCCCCCCccccccccC
Q 018853          305 VVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQIF  349 (349)
Q Consensus       305 vvNN~~~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~~~~  349 (349)
                      ++||||++|.+|++++++++++++|+|||+++++|..|+||||.+
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~  284 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIG  284 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECS
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEec
Confidence            999999999999999999999999999999999999999999864
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-117
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 4e-76
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-59
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 4e-58
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-50
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 9e-38
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  340 bits (872), Expect = e-117
 Identities = 149/283 (52%), Positives = 190/283 (67%), Gaps = 3/283 (1%)

Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT + D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHN 186
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V +   G CL ++ VSHVI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 187 VHIHHCKPSGNTMIASSP-THVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245
           +HIH C  S    +  S    V      DGD I++      W+DH SLS C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 246 GSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHV 305
           GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 306 VNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI 348
            NN++  W +YAIGGS+NPTI S+GN +TAP +   KEV  +I
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI 283
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.44
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.25
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.19
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.17
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.02
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.92
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.78
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.66
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.65
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.52
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.49
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.81
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.77
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.77
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.72
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.47
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.15
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.02
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.01
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.73
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 95.36
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.19
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.71
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.67
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 94.35
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.97
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.94
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.2
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 90.09
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=5e-87  Score=652.73  Aligned_cols=281  Identities=53%  Similarity=0.923  Sum_probs=256.8

Q ss_pred             CCceeeecccCccccccccccccCCcCccCCCCCCCCCceEEEcCCCCCCCCCCCChhHHHHhhcCCCeEEEEecCeEEE
Q 018853           67 GNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIK  146 (349)
Q Consensus        67 ~np~d~~wr~~~~w~~~~~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~  146 (349)
                      .||||+||||+|||+++||+||+||+|||++||||+||+||+|||++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999987 4789999999999999999999999999999


Q ss_pred             ecceEEecCCceEEeeCceEEEEecc-EEEEeeeccEEEEeeEEEeeccCCCccccCCC-CccccCCCCCCCcEEeeCCc
Q 018853          147 LKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSP-THVGYRGKSDGDGISIFGSQ  224 (349)
Q Consensus       147 L~~~L~i~snkTI~G~ga~i~I~G~g-~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~-~~~G~r~~~dgDaIsi~gs~  224 (349)
                      |+++|.|+|||||+|||+++.|.+.| +|++++++|||||||+||++.+.....++..+ .+.+.....++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            99999999999999999999998643 58888999999999999998765443332221 12233346789999999999


Q ss_pred             eEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccCCCeEE
Q 018853          225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIH  304 (349)
Q Consensus       225 nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R~G~~H  304 (349)
                      |||||||+|+|+.||++|+.+++++||||||+|++|++++|+|+++....+.+++||+|||+|.++..+|+|++|+|.+|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999987777777999999999988889999999999999


Q ss_pred             EEcceEeCCcceEEecCCCceEEEEcceEeCCCCCCcccccccc
Q 018853          305 VVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI  348 (349)
Q Consensus       305 vvNN~~~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~~~  348 (349)
                      ++||||++|..|++++++++++++|+|||++++.|.+|++|++.
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~  283 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI  283 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEEC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeeccc
Confidence            99999999999999999999999999999999999999998764
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure