Citrus Sinensis ID: 018870

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MPSAISPPWQEKASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
cccccccccccccccEEccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHccccccccccc
ccccccHHHHHHHcccccccccEHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHccccccccHEEEccEHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccEEHEEEEEcccccccccHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEcHHHcccccccHHHHHHHHHHccccccccccccccccccHccccccccccccccccHHccccccccHHHHHHHHHHHccHccccccccccc
mpsaisppwqekaSEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWAllqepstkHAVQERLISAAAITGMFLrrgfsetkdkvAVGKIKVEEAAKKTAQKSKTILTDIERWQkgvastdvfgvpiEVTVqrqqygkpvphiLVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMynqdpnaslpegvnpfDVAALAKYYLaslpeplttfelYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVimwqkerkpefyRQYWNhasrsssknmepatphgewdmladeseemdassaiplddgmpidfGAIEVVQCLMEQHNaiftdanetvwr
mpsaisppwqekASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALlqepstkhavQERLISAAAITGMFlrrgfsetkdkvavgkikveeaakktaqksktiltdierwqkgvastdvfgVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYRQYWNHasrsssknmepaTPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNaiftdanetvwr
MPSAISPPWQEKASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
******************************************************SRWALLQ****KHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVE**********KTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAM**************LAMEMAPVIMWQKERKPEFYRQYWN**************************************DGMPIDFGAIEVVQCLMEQHNAIFTDAN*****
***************************************************AVKSRW***************************************************************************FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYR*****************TPHGEWDMLA***************DGMPIDFGAIEVVQCLMEQHNAIFTDANE*VW*
*******************************GEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYRQYWNHA*************HGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
****************FS*SGSKL****QSVGEVAK***GNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVW*
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MPSAISPPWQEKASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q3E875376 Uncharacterized Rho GTPas yes no 0.991 0.920 0.688 1e-147
Q9VTU3476 Rho GTPase-activating pro yes no 0.638 0.468 0.218 1e-09
Q54FG5 873 Rho GTPase-activating pro yes no 0.363 0.145 0.308 5e-09
Q92502 1023 StAR-related lipid transf yes no 0.263 0.089 0.382 8e-09
A7E300 1112 Rho GTPase-activating pro no no 0.266 0.083 0.389 9e-09
Q8K031 1019 StAR-related lipid transf yes no 0.263 0.090 0.382 1e-08
B9VTT2 1091 Rho GTPase-activating pro no no 0.266 0.085 0.389 1e-08
Q9NRY41499 Rho GTPase-activating pro no no 0.335 0.078 0.274 2e-08
P835091500 Rho GTPase-activating pro no no 0.335 0.078 0.274 2e-08
Q91YM21499 Rho GTPase-activating pro no no 0.335 0.078 0.274 2e-08
>sp|Q3E875|RGAP1_ARATH Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2 Back     alignment and function desciption
 Score =  521 bits (1342), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/379 (68%), Positives = 300/379 (79%), Gaps = 33/379 (8%)

Query: 1   MPSAISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSR 56
           MPS IS  WQE+ S FFSSSG+KLREAGQ+    VGEVAKDAK N ADVAERVGS  KSR
Sbjct: 1   MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 57  WALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116
           WA+LQ+P+T+HAVQE LI+AAA TG F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTI
Sbjct: 61  WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query: 117 LTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEG 176
           LTDIERWQKGVAS+DVFGV IE+TVQRQ+  +P+P ILVKCADYL+L+GLNS  LFKAEG
Sbjct: 121 LTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEG 180

Query: 177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
           D+K+IQ LVS YNQDP AS+PEGVNP DVAAL KYYLASLP PLTTFELY+EIK ARSSI
Sbjct: 181 DRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSI 240

Query: 237 HAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERKPEF 272
           H MR +L+KLSN                        MD+ SLAMEMAPVIMW+++ +PE 
Sbjct: 241 HRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPES 300

Query: 273 YRQYWNHASRS--SSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQ 330
           YR+YW   SRS   S + E ATP   WD+L+DE E  DASS+IPLDD   +DFGA+EVVQ
Sbjct: 301 YREYWRRPSRSPKKSNDFETATP---WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQ 357

Query: 331 CLMEQHNAIFTDANETVWR 349
           CL+E HNAIFTDA ETVWR
Sbjct: 358 CLIEHHNAIFTDAAETVWR 376

Arabidopsis thaliana (taxid: 3702)
>sp|Q9VTU3|RG68F_DROME Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 SV=1 Back     alignment and function description
>sp|Q54FG5|GACJJ_DICDI Rho GTPase-activating protein gacJJ OS=Dictyostelium discoideum GN=gacJJ PE=3 SV=1 Back     alignment and function description
>sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8 OS=Homo sapiens GN=STARD8 PE=1 SV=2 Back     alignment and function description
>sp|A7E300|RHG07_BOVIN Rho GTPase-activating protein 7 OS=Bos taurus GN=DLC1 PE=2 SV=1 Back     alignment and function description
>sp|Q8K031|STAR8_MOUSE StAR-related lipid transfer protein 8 OS=Mus musculus GN=Stard8 PE=1 SV=2 Back     alignment and function description
>sp|B9VTT2|RHG07_CANFA Rho GTPase-activating protein 7 OS=Canis familiaris GN=DLC1 PE=2 SV=1 Back     alignment and function description
>sp|Q9NRY4|RHG35_HUMAN Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1 SV=3 Back     alignment and function description
>sp|P83509|RHG35_CANFA Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35 PE=2 SV=1 Back     alignment and function description
>sp|Q91YM2|RHG35_MOUSE Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
224129900377 predicted protein [Populus trichocarpa] 0.997 0.923 0.753 1e-162
255539855369 Rho GTPase activator, putative [Ricinus 0.942 0.891 0.723 1e-147
356544212379 PREDICTED: uncharacterized Rho GTPase-ac 1.0 0.920 0.693 1e-147
363807312379 uncharacterized protein LOC100810167 [Gl 0.997 0.918 0.694 1e-147
42573754367 uncharacterized Rho GTPase-activating pr 0.991 0.942 0.705 1e-146
18424478376 uncharacterized Rho GTPase-activating pr 0.991 0.920 0.688 1e-145
297793703376 small G protein family protein [Arabidop 0.991 0.920 0.686 1e-145
21553593376 unknown [Arabidopsis thaliana] 0.991 0.920 0.688 1e-145
449458339383 PREDICTED: uncharacterized Rho GTPase-ac 1.0 0.911 0.696 1e-143
449502251374 PREDICTED: uncharacterized Rho GTPase-ac 1.0 0.933 0.705 1e-142
>gi|224129900|ref|XP_002328831.1| predicted protein [Populus trichocarpa] gi|222839129|gb|EEE77480.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/378 (75%), Positives = 314/378 (83%), Gaps = 30/378 (7%)

Query: 1   MPSAISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSR 56
           MPSA+SP WQEKA+ FFS+SG KL+EAGQS    VGEVAKDAKGN ADVAE+VGSAVK+R
Sbjct: 1   MPSAVSPQWQEKATGFFSTSGVKLKEAGQSAGTFVGEVAKDAKGNVADVAEKVGSAVKTR 60

Query: 57  WALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116
           WA+L+EPST+HA+QERLI+AAA TGMF R+G SETKDKV VGK KVEE AKKTAQKSKTI
Sbjct: 61  WAILREPSTRHAMQERLITAAATTGMFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTI 120

Query: 117 LTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEG 176
           LTDIERWQKGVASTDVFGVPIEVTVQRQ++ K VPHILVKCADYL+LSGLNS  LFKAEG
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQEFSKLVPHILVKCADYLILSGLNSVDLFKAEG 180

Query: 177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
           DKKVIQ LVS+YNQD NASLPEG+NP DVA LAK YLASLPEPLTTFELYDEIKGARSSI
Sbjct: 181 DKKVIQQLVSLYNQDSNASLPEGLNPIDVAFLAKCYLASLPEPLTTFELYDEIKGARSSI 240

Query: 237 HAMRNTLKK------------------------LSNMDARSLAMEMAPVIMWQKERKPEF 272
           H M+N LKK                        L+ MDAR++A EMAPVIMWQKERKPE 
Sbjct: 241 HVMKNILKKLPAVNYMTLEFITALLLRVSQKSLLNKMDARAIATEMAPVIMWQKERKPET 300

Query: 273 YRQYWNHASRS-SSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQC 331
           YR YWN+ SRS S KNM+PA  +  WDML+ ESE+MDASS IPLDD MP DFGAI++VQC
Sbjct: 301 YRSYWNNLSRSPSKKNMDPAPTYSAWDMLS-ESEDMDASSLIPLDDAMPTDFGAIDIVQC 359

Query: 332 LMEQHNAIFTDANETVWR 349
           L+EQHNAIFTDANETVWR
Sbjct: 360 LIEQHNAIFTDANETVWR 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255539855|ref|XP_002510992.1| Rho GTPase activator, putative [Ricinus communis] gi|223550107|gb|EEF51594.1| Rho GTPase activator, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356544212|ref|XP_003540548.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Glycine max] Back     alignment and taxonomy information
>gi|363807312|ref|NP_001242623.1| uncharacterized protein LOC100810167 [Glycine max] gi|255635720|gb|ACU18209.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|42573754|ref|NP_974973.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|332010098|gb|AED97481.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18424478|ref|NP_568935.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|172046652|sp|Q3E875.2|RGAP1_ARATH RecName: Full=Uncharacterized Rho GTPase-activating protein At5g61530 gi|15028203|gb|AAK76598.1| unknown protein [Arabidopsis thaliana] gi|22136944|gb|AAM91816.1| unknown protein [Arabidopsis thaliana] gi|332010097|gb|AED97480.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793703|ref|XP_002864736.1| small G protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297310571|gb|EFH40995.1| small G protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21553593|gb|AAM62686.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449458339|ref|XP_004146905.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502251|ref|XP_004161589.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:2151611376 AT5G61530 "AT5G61530" [Arabido 0.727 0.675 0.755 6.7e-134
FB|FBgn0036257476 RhoGAP68F "Rho GTPase activati 0.481 0.352 0.255 2.3e-09
UNIPROTKB|D4A814312 D4A814 "Uncharacterized protei 0.332 0.371 0.292 1.2e-08
DICTYBASE|DDB_G0290873 873 gacJJ "RhoGAP domain-containin 0.567 0.226 0.259 1.6e-08
UNIPROTKB|D6RBC2118 ARHGAP24 "Rho GTPase-activatin 0.277 0.822 0.292 6.4e-08
UNIPROTKB|F1MPV3 635 RALBP1 "Uncharacterized protei 0.444 0.244 0.295 1.1e-07
UNIPROTKB|Q2KJ55 640 ARHGAP25 "Rho GTPase activatin 0.343 0.187 0.295 1.8e-07
MGI|MGI:13326371501 Arhgap5 "Rho GTPase activating 0.415 0.096 0.299 1.9e-07
UNIPROTKB|G3V360137 ARHGAP5 "Rho GTPase-activating 0.280 0.715 0.285 2.9e-07
UNIPROTKB|E1BX92 569 RALBP1 "Uncharacterized protei 0.395 0.242 0.321 3e-07
TAIR|locus:2151611 AT5G61530 "AT5G61530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 980 (350.0 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
 Identities = 195/258 (75%), Positives = 224/258 (86%)

Query:     1 MPSAISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSR 56
             MPS IS  WQE+ S FFSSSG+KLREAGQ+    VGEVAKDAK N ADVAERVGS  KSR
Sbjct:     1 MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query:    57 WALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116
             WA+LQ+P+T+HAVQE LI+AAA TG F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTI
Sbjct:    61 WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query:   117 LTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEG 176
             LTDIERWQKGVAS+DVFGV IE+TVQRQ+  +P+P ILVKCADYL+L+GLNS  LFKAEG
Sbjct:   121 LTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEG 180

Query:   177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
             D+K+IQ LVS YNQDP AS+PEGVNP DVAAL KYYLASLP PLTTFELY+EIK ARSSI
Sbjct:   181 DRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSI 240

Query:   237 HAMRNTLKKLSNMDARSL 254
             H MR +L+KLSN++  +L
Sbjct:   241 HRMRQSLQKLSNVNYNTL 258
GO:0005100 "Rho GTPase activator activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
FB|FBgn0036257 RhoGAP68F "Rho GTPase activating protein at 68F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|D4A814 D4A814 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290873 gacJJ "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|D6RBC2 ARHGAP24 "Rho GTPase-activating protein 24" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPV3 RALBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ55 ARHGAP25 "Rho GTPase activating protein 25" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1332637 Arhgap5 "Rho GTPase activating protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V360 ARHGAP5 "Rho GTPase-activating protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX92 RALBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3E875RGAP1_ARATHNo assigned EC number0.68860.99140.9202yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.86.332.1
hypothetical protein (377 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 4e-25
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 1e-22
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 2e-20
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 3e-13
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 1e-12
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 4e-12
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 2e-11
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 2e-10
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 1e-09
cd04396225 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho 2e-09
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 5e-09
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 3e-08
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 8e-08
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 4e-07
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 7e-07
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 8e-07
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 2e-06
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 2e-06
cd04378203 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho 3e-06
cd04397213 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas 3e-06
cd04408200 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase- 5e-06
cd04409211 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas 5e-06
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 6e-06
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 6e-06
cd04374203 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato 2e-05
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 3e-05
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 5e-05
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 7e-05
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 9e-05
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 2e-04
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 6e-04
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 0.001
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information 
 Score = 98.8 bits (247), Expect = 4e-25
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 31/147 (21%)

Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAALA 209
           P I+ KC ++L   GL+++ +F+  G    I+ L   ++   +     E  +   VA+L 
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 210 KYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLS---------------- 247
           K +L  LPEPL TFELY+E   A  S      + A+R  L+KL                 
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120

Query: 248 --------NMDARSLAMEMAPVIMWQK 266
                    M+A +LA+   P ++   
Sbjct: 121 VAQNSEVNKMNAHNLAIVFGPTLLRPP 147

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 99.98
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 99.98
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 99.97
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 99.97
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 99.96
KOG2200 674 consensus Tumour suppressor protein p122-RhoGAP/DL 99.96
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 99.95
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 99.94
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 99.94
KOG1453918 consensus Chimaerin and related Rho GTPase activat 99.94
KOG42691112 consensus Rac GTPase-activating protein BCR/ABR [S 99.93
KOG1450650 consensus Predicted Rho GTPase-activating protein 99.93
KOG1451 812 consensus Oligophrenin-1 and related Rho GTPase-ac 99.93
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 99.92
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.91
KOG3564604 consensus GTPase-activating protein [General funct 99.91
KOG4270 577 consensus GTPase-activator protein [Signal transdu 99.91
KOG2710412 consensus Rho GTPase-activating protein [Signal tr 99.9
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 99.9
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.89
KOG1452442 consensus Predicted Rho GTPase-activating protein 99.68
KOG4724 741 consensus Predicted Rho GTPase-activating protein 99.58
KOG42711100 consensus Rho-GTPase activating protein [Signal tr 99.57
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.41
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.29
KOG3565 640 consensus Cdc42-interacting protein CIP4 [Cytoskel 98.87
KOG4370 514 consensus Ral-GTPase effector RLIP76 [Signal trans 98.66
KOG4724741 consensus Predicted Rho GTPase-activating protein 97.54
PF08101 420 DUF1708: Domain of unknown function (DUF1708); Int 97.05
KOG1453 918 consensus Chimaerin and related Rho GTPase activat 94.01
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information 
Probab=100.00  E-value=7.3e-38  Score=288.58  Aligned_cols=188  Identities=27%  Similarity=0.426  Sum_probs=150.2

Q ss_pred             CCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhH
Q 018870          130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA  209 (349)
Q Consensus       130 ~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lL  209 (349)
                      +++||+||+.++++.  +..||.+|.+|++||+++|+++|||||++|+..++++|++.+|.+.+....+..++|+||++|
T Consensus         2 ~~vFGvpL~~~~~r~--g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL   79 (220)
T cd04375           2 KNVFGVPLLVNLQRT--GQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML   79 (220)
T ss_pred             CCEecCcHHHHHhhc--CCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence            479999999999875  678999999999999999999999999999999999999999987654444568999999999


Q ss_pred             HHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhcc
Q 018870          210 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMA  259 (349)
Q Consensus       210 K~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFg  259 (349)
                      |.|||+||+||||+++|+.|+++      .++++.++.++..||+                        |+++|||+|||
T Consensus        80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa  159 (220)
T cd04375          80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA  159 (220)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHh
Confidence            99999999999999999999986      3567889999999998                        99999999999


Q ss_pred             ccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhh
Q 018870          260 PVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAI  339 (349)
Q Consensus       260 PtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~i  339 (349)
                      ||||+....+........+...+......      ...++     ++               ...++++|.+||+||+.|
T Consensus       160 P~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l-----~e---------------~~~~~~~v~~lI~~~~~l  213 (220)
T cd04375         160 PSLFHLNTSRRENSSPARRMQRKKSLGKP------DQKEL-----SE---------------NKAAHQCLAYMIEECNTL  213 (220)
T ss_pred             hhhcCCCCCCcccccchhhhccccccCCC------cHHHH-----HH---------------HHHHHHHHHHHHHHHHHH
Confidence            99999877653211110000000000000      00011     11               356889999999999999


Q ss_pred             cCCCcc
Q 018870          340 FTDANE  345 (349)
Q Consensus       340 F~~~~e  345 (349)
                      |.++.+
T Consensus       214 f~vp~~  219 (220)
T cd04375         214 FMVPKE  219 (220)
T ss_pred             hcCCCC
Confidence            999976

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG3564 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton] Back     alignment and domain information
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 2e-09
3kuq_A228 Crystal Structure Of The Dlc1 Rhogap Domain Length 7e-09
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 2e-07
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 2e-07
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 2e-05
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 2e-05
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 3e-05
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 3e-05
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 5e-05
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure 
Iteration: 1

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 125 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 184
           K    ++ FGVP+   V  +   KP+P  + +C +Y+  +GL+++ +++  G+K  ++ L
Sbjct: 46  KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 102
Query: 185 VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 235
              ++QD N  L E    VN   VA   K + + LP+PL  + +        +I      
Sbjct: 103 QRQFDQDHNLDLAEKDFTVN--TVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQK 160
Query: 236 IHAMRNTLKKL 246
           +HA++  LKK 
Sbjct: 161 LHALKEVLKKF 171
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228 Back     alignment and structure
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 5e-25
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 8e-25
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 4e-24
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 2e-21
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 3e-21
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 2e-20
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 6e-20
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 1e-19
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 3e-19
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 1e-18
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 7e-18
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 3e-17
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 1e-16
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 2e-16
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 4e-15
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 7e-13
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228 Back     alignment and structure
 Score =  100 bits (250), Expect = 5e-25
 Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 38/201 (18%)

Query: 124 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 183
           +       VFGVP+ V VQR   G+P+P  + +   YL    L+   LF+  G K  IQ 
Sbjct: 12  ENLYFQGSVFGVPLTVNVQR--TGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQA 69

Query: 184 LVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE-IKGARSS-----IH 237
           L  M     +    EG + +DVA + K Y   LPEPL T +L +  ++  +       + 
Sbjct: 70  LRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQ 129

Query: 238 AMRNTLKKL-----------------------SN-MDARSLAMEMAPVIMWQKERKPEFY 273
           A++  +  L                        N M   +LA+ +AP +      K E  
Sbjct: 130 AIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRE-- 187

Query: 274 RQYWNHASRSSSKNMEPATPH 294
               N + R   +      P 
Sbjct: 188 ----NSSPRVMQRKQSLGKPD 204
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198 Back     alignment and structure
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242 Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214 Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202 Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231 Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229 Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201 Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 99.97
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 99.95
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.8e-37  Score=280.29  Aligned_cols=172  Identities=21%  Similarity=0.416  Sum_probs=147.5

Q ss_pred             hcCCCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC--CCC
Q 018870          124 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE--GVN  201 (349)
Q Consensus       124 ~~~~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~--~~d  201 (349)
                      .+|..+.++||++|+++++++  +..||.+|.+|++||+++|+++|||||++|+..++++|++.+|++..+++..  ..|
T Consensus        11 ~~~~~~~~vFG~~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d   88 (214)
T 3byi_A           11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED   88 (214)
T ss_dssp             HHTSCCCCSTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred             hcCCCcCCccCCcHHHHHHHc--CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence            356677899999999999886  5789999999999999999999999999999999999999999987666543  259


Q ss_pred             hhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcc
Q 018870          202 PFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDA  251 (349)
Q Consensus       202 ~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~  251 (349)
                      +|+||++||.|||+||+||+|+++|+.|+++.      +++..++.++.+||+                        |++
T Consensus        89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~  168 (214)
T 3byi_A           89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMST  168 (214)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence            99999999999999999999999999999873      467889999999998                        999


Q ss_pred             cchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHH
Q 018870          252 RSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQC  331 (349)
Q Consensus       252 ~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~  331 (349)
                      +|||+||||+|+|++..+..                           +.    .+               ......||++
T Consensus       169 ~NLa~vf~P~Ll~~~~~~~~---------------------------~~----~~---------------~~~~~~vve~  202 (214)
T 3byi_A          169 QSLGIVFGPTLLRAENETGN---------------------------MA----IH---------------MVYQNQIAEL  202 (214)
T ss_dssp             HHHHHHHHHHHHCCTTSSSC---------------------------HH----HH---------------HHHHHHHHHH
T ss_pred             HHhHHHhccccCCCCCccHH---------------------------HH----HH---------------HHHHHHHHHH
Confidence            99999999999998765421                           00    00               1234689999


Q ss_pred             HHHhchhhcCCC
Q 018870          332 LMEQHNAIFTDA  343 (349)
Q Consensus       332 LIe~~~~iF~~~  343 (349)
                      ||+||+.||.++
T Consensus       203 LI~~~~~iF~~d  214 (214)
T 3byi_A          203 MLSEYSKIFGSE  214 (214)
T ss_dssp             HHHTHHHHHC--
T ss_pred             HHHHHHHhcCCC
Confidence            999999999863
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 2e-24
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 2e-19
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 5e-15
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 2e-12
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (239), Expect = 2e-24
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 29/165 (17%)

Query: 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 191
            FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN  
Sbjct: 6   QFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG 65

Query: 192 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTLKKL 246
                 +       A + K +L  LPEPL TF+LY  + G  +      + A    L+ L
Sbjct: 66  LPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTL 125

Query: 247 ------------------------SNMDARSLAMEMAPVIMWQKE 267
                                   + M   +LA+   P ++W K+
Sbjct: 126 PEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 170
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 99.97
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 99.97
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=266.93  Aligned_cols=137  Identities=21%  Similarity=0.374  Sum_probs=123.3

Q ss_pred             CccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-CCC--CCCCChhhHHh
Q 018870          131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASL--PEGVNPFDVAA  207 (349)
Q Consensus       131 ~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~--~~~~d~~~vA~  207 (349)
                      ++||+||+++++++  +..||.+|.+|++||+++|+++|||||++|+..++++|++.||++.. .++  ....|+|+||+
T Consensus         1 kiFg~~L~~~~~~~--~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~   78 (196)
T d1xa6a1           1 KVYCCDLTTLVKAH--NTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITG   78 (196)
T ss_dssp             CCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHH
T ss_pred             CccCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHH
Confidence            48999999999987  57899999999999999999999999999999999999999998653 332  23469999999


Q ss_pred             hHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870          208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAME  257 (349)
Q Consensus       208 lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAiv  257 (349)
                      +||.|||+||+||+|+++|+.|+.+      ..++..++.++.+||+                        ||++|||+|
T Consensus        79 ~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~  158 (196)
T d1xa6a1          79 ALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIV  158 (196)
T ss_dssp             HHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHH
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHH
Confidence            9999999999999999999999887      3467889999999998                        999999999


Q ss_pred             ccccccccCCCC
Q 018870          258 MAPVIMWQKERK  269 (349)
Q Consensus       258 FgPtLl~~~~~~  269 (349)
                      |||+|++++..+
T Consensus       159 f~P~l~~~~~~~  170 (196)
T d1xa6a1         159 FGPTLMRPPEDS  170 (196)
T ss_dssp             HTTTSCCCCCSC
T ss_pred             hccccccCCCcc
Confidence            999999987654
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure