Citrus Sinensis ID: 018876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEc
Coil and Loop (DISEMBL)
mlgkckqpeKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHmkntpdcqpdvntYSILIKSCLKAFAFDKVQALLSDmstqgirpntvTYNTLIDAYGRAKMFAEMELTLVKMLSedcepdvwtmnctlrafgnsgqidTMEKCYEKFqsagiqpsiNTFNILLDsygkaghfEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMrserikpscVTLCSLVRayghagkpeklgsvlrfidnsdimLDTVFFNCLVDAYGRLKCFAEMKGVLEVMqqrgckpdkvtYRTMVRAYSTNGMKNHAKEFQDLVEKMDETClamkrpdf
Flexible Loop (DISEMBL)
MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSdmstqgirpntVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYghagkpeklGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEvmqqrgckpdkvtYRTMVRaystngmknhAKEFQDLVEKMDETClamkrpdf
Low Complexity Region (SEG)
MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF
Disordered region (IsUnstruct)
*************LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN****************************
Disordered Region (DISOPRED)
MLGKCK*PEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF
Disordered Region (DISEMBL)
********EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF
Disordered Region (DISPRO)
MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q9FKC3	508	Pentatricopeptide repeat-	yes	no	1.0	0.687	0.74	1e-160
Q9SCP4	447	Pentatricopeptide repeat-	no	no	0.948	0.740	0.475	3e-90
Q9SQU6	486	Pentatricopeptide repeat-	no	no	0.988	0.709	0.442	1e-79
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.988	0.400	0.249	3e-38
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.905	0.385	0.272	2e-35
Q9SV96	563	Pentatricopeptide repeat-	no	no	0.951	0.589	0.289	7e-35
Q8L844	709	Pentatricopeptide repeat-	no	no	0.871	0.428	0.301	6e-34
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.914	0.533	0.271	1e-32
Q9FLD8	678	Pentatricopeptide repeat-	no	no	0.934	0.480	0.238	3e-32
Q9SIC9	918	Pentatricopeptide repeat-	no	no	0.957	0.363	0.25	3e-31

>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2

 Score =  563 bits (1450), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 259/350 (74%), Positives = 303/350 (86%), Gaps = 1/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAHELFQ M++EGC  N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKS L+ FAFDKVQ LLSDM  QGIRPNT+TYNTLIDAYG+AKMF EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMEST 278

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 279 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 338

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 339 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 398

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 399 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 458

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++G KPDK+TYRTMV+AY  +GM  H KE   +VE + E  + +K+PDF
Sbjct: 459 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 508

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1

 Score =  332 bits (850), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 158/332 (47%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           +LG CKQP++A  LF+ M+ EG       +T+L+S YG+S L DKAFS LE+MK+  DC+
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV T+++LI  C K   FD V++++ +MS  G+  +TVTYNT+ID YG+A MF EME  
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222

Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L  M+ + D  PDV T+N  + ++GN   +  ME  Y +FQ  G+QP I TFNIL+ S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KAG ++KM +VM++M+K  +S T VTYNIVI+ FG+AG +++M+ +FR M+ + +KP+ +
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           T CSLV AY  AG   K+ SVLR I NSD++LDT FFNC+++AYG+    A MK +   M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331
           ++R CKPDK+T+ TM++ Y+ +G+ +  +E +
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELE 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/346 (44%), Positives = 209/346 (60%), Gaps = 1/346 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           +LGK  QP +A +LF  M++EG +   + +TALL+AY RS L D AFS+L+ MK+ P CQ
Sbjct: 133 LLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQ 192

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV TYS L+K+C+ A  FD V +L  +M  + I PNTVT N ++  YGR   F +ME  
Sbjct: 193 PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKV 252

Query: 121 LVKML-SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L  ML S  C+PDVWTMN  L  FGN G+ID ME  YEKF++ GI+P   TFNIL+ SYG
Sbjct: 253 LSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYG 312

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           K   ++KMS+VMEYM+K  + WT  TYN +I+AF   GD K ME  F  MRSE +K    
Sbjct: 313 KKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTK 372

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           T C L+  Y +AG   K+ S ++     +I  +T F+N ++ A  +     EM+ V   M
Sbjct: 373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK 345
           ++R C  D  T+  MV AY   GM +     +   +K+ +  +A K
Sbjct: 433 KERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATK 478

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 188/385 (48%), Gaps = 40/385 (10%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           +LG+    +K  E+F  M  +G   +  S+TAL++AYGR+G ++ +  LL+ MKN     
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNE-KIS 208

Query: 61  PDVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDA------------ 107
           P + TY+ +I +C +    ++ +  L ++M  +GI+P+ VTYNTL+ A            
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268

Query: 108 -----------------------YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
                                  +G+ +   ++   L +M S    PD+ + N  L A+ 
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYA 328

Query: 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV 204
            SG I      + + Q+AG  P+ NT+++LL+ +G++G ++ +  +   M+  +      
Sbjct: 329 KSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAA 388

Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
           TYNI+I+ FG  G  K++  LF  M  E I+P   T   ++ A G  G  E    +L+++
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448

Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
             +DI+  +  +  +++A+G+   + E       M + G  P   T+ +++ +++  G+ 
Sbjct: 449 TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL- 507

Query: 325 NHAKEFQDLVEKMDETCLAMKRPDF 349
              KE + ++ ++ ++ +   R  F
Sbjct: 508 --VKESEAILSRLVDSGIPRNRDTF 530

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 36/352 (10%)

Query: 3   GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
           GK  +P++A ++   MV  G   +  ++ +L+SAY R G+ D+A  L   M      +PD
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK-GTKPD 383

Query: 63  VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
           V TY+ L+    +A   +   ++  +M   G +PN  T+N  I  YG    F EM     
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443

Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
           ++      PD+ T N  L  FG +G    +   +++ + AG  P   TFN L+ +Y + G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503

Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
            FE+   V   M     +  + TYN V+ A  R G  +Q E +   M   R KP+ +T C
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563

Query: 243 SLVRAYGHAGKPEKLGSVLR-----FIDNSDIMLDTVF---------------------- 275
           SL+ AY +  +   + S+        I+   ++L T+                       
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623

Query: 276 --------FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319
                    N +V  YGR +  A+  GVL+ M++RG  P   TY +++  +S
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHS 675

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1

 Score =  148 bits (373), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 171/346 (49%), Gaps = 14/346 (4%)

Query: 2   LGKCKQPEKAHELFQAMVDEGC-DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           LGK  +  +  E+F+ M  +     +   ++ L+S  G+ G    A  L   MKN+  C+
Sbjct: 107 LGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS-GCR 165

Query: 61  PDVNTYSILIKSCL----KAFAFDKVQALLSDMSTQGI---RPNTVTYNTLIDAYGRAKM 113
           PD + Y+ LI + L    KA A +KV+  L  M  +GI   +PN VTYN L+ A+ ++  
Sbjct: 166 PDASVYNALITAHLHTRDKAKALEKVRGYLDKM--KGIERCQPNVVTYNILLRAFAQSGK 223

Query: 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI 173
             ++      +      PDV+T N  + A+G +G I  ME    + +S   +P I TFN+
Sbjct: 224 VDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNV 283

Query: 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233
           L+DSYGK   FEKM    + + +     T+ T+N +I  +G+A  + + E++F+ M    
Sbjct: 284 LIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMN 343

Query: 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293
             PS +T   ++  YG+ G   +   +   +  SD +L     N +++ Y R   + E  
Sbjct: 344 YIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEAD 403

Query: 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
            +          PD  TY+ + +AY+   MK   ++ Q L++KM++
Sbjct: 404 KLFHNASAFRVHPDASTYKFLYKAYTKADMK---EQVQILMKKMEK 446

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1

 Score =  145 bits (365), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 158/312 (50%), Gaps = 8/312 (2%)

Query: 9   EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
           E A  + + M       N+  F+ LL+ +   G + K F +L+ MK+    +PD   Y++
Sbjct: 391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI-GVKPDRQFYNV 449

Query: 69  LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID---AYGRAKMFAEMELTLVKML 125
           +I +  K    D        M ++GI P+ VT+NTLID    +GR  +  EM      M 
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEM---FEAME 506

Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
              C P   T N  + ++G+  + D M++   K +S GI P++ T   L+D YGK+G F 
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566

Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
                +E M+      +   YN +I+A+ + G  +Q    FR+M S+ +KPS + L SL+
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 626

Query: 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
            A+G   +  +  +VL+++  + +  D V +  L+ A  R+  F ++  V E M   GCK
Sbjct: 627 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 686

Query: 306 PDKVTYRTMVRA 317
           PD+   R+M+R+
Sbjct: 687 PDRKA-RSMLRS 697

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 1/320 (0%)

Query: 11  AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
           A +L   M D GC  +  ++  L++   + G  D+A   L  M ++  CQP+V T++I++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIIL 316

Query: 71  KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
           +S      +   + LL+DM  +G  P+ VT+N LI+   R  +       L KM    C+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376

Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
           P+  + N  L  F    ++D   +  E+  S G  P I T+N +L +  K G  E    +
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436

Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
           +  +     S  ++TYN VID   +AG   +   L   MR++ +KP  +T  SLV     
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496

Query: 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310
            GK ++        +   I  + V FN ++    + +        L  M  RGCKP++ +
Sbjct: 497 EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556

Query: 311 YRTMVRAYSTNGMKNHAKEF 330
           Y  ++   +  GM   A E 
Sbjct: 557 YTILIEGLAYEGMAKEALEL 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 164/327 (50%), Gaps = 1/327 (0%)

Query: 4   KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
           + KQ + AH LF  M       +  +++ L++++G+ G+FD A S L+ M+       D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQD-RVSGDL 225

Query: 64  NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
             YS LI+   +   + K  ++ S +   GI P+ V YN++I+ YG+AK+F E  L + +
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285

Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
           M      P+  + +  L  +  + +       + + +       + T NI++D YG+   
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345

Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
            ++   +   ++K      +V+YN ++  +G A    +  +LFRLM+ + I+ + VT  +
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405

Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
           +++ YG   + EK  ++++ + +  I  + + ++ ++  +G+         + + ++  G
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465

Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEF 330
            + D+V Y+TM+ AY   G+  HAK  
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAKRL 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 161/336 (47%), Gaps = 2/336 (0%)

Query: 2   LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
           LG+  +   A  +F+     G      +F+AL+SAYGRSGL ++A S+   MK     +P
Sbjct: 243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY-GLRP 301

Query: 62  DVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           ++ TY+ +I +C K    F +V     +M   G++P+ +T+N+L+    R  ++      
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361

Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
             +M +   E DV++ N  L A    GQ+D   +   +     I P++ +++ ++D + K
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421

Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
           AG F++   +   M+    +   V+YN ++  + + G  ++   + R M S  IK   VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481

Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
             +L+  YG  GK +++  V   +    ++ + + ++ L+D Y +   + E   +    +
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
             G + D V Y  ++ A   NG+   A    D + K
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
224069810	388	predicted protein [Populus trichocarpa]	1.0	0.899	0.785	1e-168
359480144	497	PREDICTED: pentatricopeptide repeat-cont	1.0	0.702	0.797	1e-168
255578090	636	pentatricopeptide repeat-containing prot	0.977	0.536	0.786	1e-164
356527376	515	PREDICTED: pentatricopeptide repeat-cont	1.0	0.677	0.76	1e-163
449443726	456	PREDICTED: pentatricopeptide repeat-cont	0.994	0.760	0.765	1e-161
449475395	511	PREDICTED: pentatricopeptide repeat-cont	0.994	0.679	0.765	1e-161
224069806	485	predicted protein [Populus trichocarpa]	0.962	0.692	0.754	1e-160
334188265	508	pentatricopeptide repeat-containing prot	1.0	0.687	0.74	1e-158
9758872	495	unnamed protein product [Arabidopsis tha	0.962	0.678	0.705	1e-147
297792071	498	pentatricopeptide repeat-containing prot	0.962	0.674	0.705	1e-147

>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa] gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 275/350 (78%), Positives = 319/350 (91%), Gaps = 1/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQP+KAH+LFQAM+DEGC    +S+TALLSAYGRSGLFDKAFS++E MKNTPDC+
Sbjct: 39  MLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCR 98

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKSCL+ FAFDKVQ LLSDM + GIRPNTVTYNT+IDAYG+AKMFAEME T
Sbjct: 99  PDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEMEAT 158

Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++MLS+ DCEPDVWTMN T+RAFG SGQ++ ME CYEKFQSAGI+P+I TFNILLDSYG
Sbjct: 159 LMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYG 218

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KAG+++KMSAVMEYMQ+YHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 219 KAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 278

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAY  AGKPEK+GSVLRFI+NSD+ LDTVFFNCLVDAYGRL+CFAEMK VLE+M
Sbjct: 279 TLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELM 338

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++GCKPDKVTYRTM++AYS  GM +HAK+ ++L+  ++ T    K+PDF
Sbjct: 339 EEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTRSPKKKPDF 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Vitis vinifera] gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/350 (79%), Positives = 311/350 (88%), Gaps = 1/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAH LF AM+DEGC  N +++TALLSAY RSGLFDKAFSLLE MKNTPDCQ
Sbjct: 147 MLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYSRSGLFDKAFSLLEKMKNTPDCQ 206

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYS+LIKSCL+  AFDKV  LLSDM+ QGI+PNTVTYNTLIDAYG+AK FAEME T
Sbjct: 207 PDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMEST 266

Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++ML E  CEPDVWTMN TLRAFG+SGQI+TMEKCYEKFQSAGI+P+I TFNILLDSYG
Sbjct: 267 LLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYG 326

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KA  +EKMSAVMEYMQKYH+SWTIVTYN+VIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 327 KAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 386

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG AGK EK+G VLRFI+NSD+MLD VFFNCLVDAYGRL CFAEMKGVLE+M
Sbjct: 387 TLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMM 446

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++GCKPDK+TYRTM++AY   GM + AKE Q L+   DET L M +PDF
Sbjct: 447 KKKGCKPDKITYRTMIKAYKIGGMTSCAKELQGLMRMPDETRLEMGKPDF 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 272/346 (78%), Positives = 305/346 (88%), Gaps = 5/346 (1%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAHELFQAM+ EGCD + +S+TALLSAYGRSGL DKAFSLLE MK  PDCQ
Sbjct: 164 MLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQ 223

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKSC++ FAFDK + LLS+M + GI PNT+TYNTLIDAYG+AKMF EME T
Sbjct: 224 PDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEAT 283

Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           LVKMLS+ +CEPDVWTMN TLRAFG SGQI+TMEKCYEKFQ AGI+PSI TFN+LLDSYG
Sbjct: 284 LVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYG 343

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KAG ++KMSAVMEYMQKYHYSWTI+TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 344 KAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 403

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG A KPEK+  VLRFI+NSDI LDTVFFNCLVDAYGR+ CFAEMKGVL +M
Sbjct: 404 TLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVLILM 463

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL----VEKMDETC 341
           +Q+G +PDK+TYRTM++AYS+ GM  H KE QDL    V K++  C
Sbjct: 464 EQKGYRPDKITYRTMIKAYSSKGMTKHVKELQDLEAAGVRKVNNPC 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Glycine max]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/350 (76%), Positives = 308/350 (88%), Gaps = 1/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAHELFQAMVDEGC  + +S+TALLSAY RSGL DKAFSLLE MKNTP CQ
Sbjct: 166 MLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQ 225

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV TYSIL+KSCL+ FAFDK+Q+LLSDM+ +GI+PNTVTYNTLIDAYG+A+ F+EME  
Sbjct: 226 PDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESI 285

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           LV+ML++  C+PDVWTMN TLRAFGN GQI+TMEKCYEKFQ+AGIQP++ TFNILLDSYG
Sbjct: 286 LVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYG 345

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KA  ++KMSAVMEYMQKYHYSWTIVT+NIVIDAFG+AGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 346 KAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCV 405

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAY  AGKPEK+  VLRF++NSD++LDTVFFNCLVDAY RL C AEMKGVLE+M
Sbjct: 406 TLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMM 465

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +Q GCKPD VTYRTM++ Y+  GM +HAKE ++L+  ++   L   +PDF
Sbjct: 466 KQNGCKPDIVTYRTMIKTYTYKGMDSHAKELRELLPTVNRPPLKRDKPDF 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cucumis sativus]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/350 (76%), Positives = 304/350 (86%), Gaps = 3/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQ EKA+ELFQ M++EGC+ + +S+TALLSAY RSGL D+AFS+L  MKN+PDCQ
Sbjct: 109 MLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQ 168

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKSCL+ FAF+K Q LLSDM T+GI+PNT+TYNT IDAYG+AKMFAEME  
Sbjct: 169 PDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESI 228

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           LV ML++D C+PDVWTMN TLRAFG SGQ++TMEKCYEKFQ AGIQPSI TFNILLDSYG
Sbjct: 229 LVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYG 288

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KA  +EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG+LKQME+LFRLMRSERIKPSCV
Sbjct: 289 KAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCV 348

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG AGK EK+ SVL  ++NSDIMLDTVF+NCLVDAYGRL+CFAEMK VL +M
Sbjct: 349 TLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMM 408

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +QRGCKPDK TYRTM RAYS  GM NHAKE Q+L+   + +     RPD 
Sbjct: 409 EQRGCKPDKTTYRTMARAYSDGGMANHAKEIQELITTAEPS--KRTRPDL 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cucumis sativus]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/350 (76%), Positives = 304/350 (86%), Gaps = 3/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQ EKA+ELFQ M++EGC+ + +S+TALLSAY RSGL D+AFS+L  MKN+PDCQ
Sbjct: 164 MLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQ 223

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKSCL+ FAF+K Q LLSDM T+GI+PNT+TYNT IDAYG+AKMFAEME  
Sbjct: 224 PDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESI 283

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           LV ML++D C+PDVWTMN TLRAFG SGQ++TMEKCYEKFQ AGIQPSI TFNILLDSYG
Sbjct: 284 LVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYG 343

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KA  +EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG+LKQME+LFRLMRSERIKPSCV
Sbjct: 344 KAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCV 403

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG AGK EK+ SVL  ++NSDIMLDTVF+NCLVDAYGRL+CFAEMK VL +M
Sbjct: 404 TLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMM 463

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +QRGCKPDK TYRTM RAYS  GM NHAKE Q+L+   + +     RPD 
Sbjct: 464 EQRGCKPDKTTYRTMARAYSDGGMANHAKEIQELITTAEPS--KRTRPDL 511

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa] gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/350 (75%), Positives = 306/350 (87%), Gaps = 14/350 (4%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQP+KAH+LFQAM+DEGC    +S+TALLSAYGRSGLFDKAFS++E MKNTPDC+
Sbjct: 149 MLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCR 208

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKSCL+ FAFDKVQ LLSDM + GIRPNTVT             FAEME T
Sbjct: 209 PDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVT-------------FAEMEAT 255

Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++MLS+ DCEPDVWTMN T+RAFG SGQ++ ME CYEKFQSAGI+P+I TFNILLDSYG
Sbjct: 256 LMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYG 315

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           KAG+++KMSAVMEYMQ+YHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 316 KAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 375

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAY  AGKPEK+GSVLRFI+NSD+ LDTVFFNCLVDAYGRL+CFAEMK VLE+M
Sbjct: 376 TLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELM 435

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++GCKPDKVTYRTM++AYS  GM +HAK+ ++L+  ++ T    K+PDF
Sbjct: 436 EEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTRSPKKKPDF 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48730, chloroplastic; Flags: Precursor gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 259/350 (74%), Positives = 303/350 (86%), Gaps = 1/350 (0%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAHELFQ M++EGC  N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKS L+ FAFDKVQ LLSDM  QGIRPNT+TYNTLIDAYG+AKMF EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMEST 278

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 279 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 338

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 339 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 398

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 399 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 458

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++G KPDK+TYRTMV+AY  +GM  H KE   +VE + E  + +K+PDF
Sbjct: 459 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 508

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/350 (70%), Positives = 290/350 (82%), Gaps = 14/350 (4%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAHELFQ M++EGC  N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKS L+ FAFDKVQ LLSDM  QGIRPNT+T             F EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTIT-------------FVEMEST 265

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 266 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 325

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 326 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 385

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 386 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 445

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++G KPDK+TYRTMV+AY  +GM  H KE   +VE + E  + +K+PDF
Sbjct: 446 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 495

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/350 (70%), Positives = 289/350 (82%), Gaps = 14/350 (4%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           MLGKCKQPEKAHELFQ M++EGC  N + +TALLSAY RSG FD AF+LLE MK++ +CQ
Sbjct: 162 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSRSGRFDAAFTLLERMKSSHNCQ 221

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           PDV+TYSILIKS L+ FAFDKV  LLSDM   GIRPNT+T             F EME T
Sbjct: 222 PDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTIT-------------FVEMEST 268

Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 269 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 328

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 329 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIIPSCV 388

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
           TLCSLVRAYG AGK +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 389 TLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 448

Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
           +++G KPDK+TYRTMV+AY  +GM  H KE   + E + ET + +K+PDF
Sbjct: 449 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVGESVGETQVVLKKPDF 498

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2081041	486	PPR2 "pentatricopeptide repeat	0.988	0.709	0.442	5.1e-74
TAIR|locus:2122561	563	EMB2453 "EMBRYO DEFECTIVE 2453	0.876	0.543	0.292	4.3e-35
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.954	0.406	0.278	1.6e-33
TAIR|locus:2027166	862	PTAC2 "plastid transcriptional	0.982	0.397	0.244	1e-32
TAIR|locus:2157607	709	AT5G42310 [Arabidopsis thalian	0.879	0.433	0.294	1.3e-32
TAIR|locus:2178037	678	AT5G39980 [Arabidopsis thalian	0.928	0.477	0.24	7.8e-31
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.948	0.553	0.268	7.9e-31
TAIR|locus:2157732	723	EMB1006 "embryo defective 1006	0.891	0.430	0.260	2.6e-30
TAIR|locus:2061310	918	GUN1 "AT2G31400" [Arabidopsis	0.957	0.363	0.25	3.5e-30
TAIR|locus:2044430	822	AT2G18940 [Arabidopsis thalian	0.936	0.397	0.256	7.5e-30

TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 153/346 (44%), Positives = 209/346 (60%)

Query:     1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
             +LGK  QP +A +LF  M++EG +   + +TALL+AY RS L D AFS+L+ MK+ P CQ
Sbjct:   133 LLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQ 192

Query:    61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
             PDV TYS L+K+C+ A  FD V +L  +M  + I PNTVT N ++  YGR   F +ME  
Sbjct:   193 PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKV 252

Query:   121 LVKML-SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
             L  ML S  C+PDVWTMN  L  FGN G+ID ME  YEKF++ GI+P   TFNIL+ SYG
Sbjct:   253 LSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYG 312

Query:   180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
             K   ++KMS+VMEYM+K  + WT  TYN +I+AF   GD K ME  F  MRSE +K    
Sbjct:   313 KKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTK 372

Query:   240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
             T C L+  Y +AG   K+ S ++     +I  +T F+N ++ A  +     EM+ V   M
Sbjct:   373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432

Query:   300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK 345
             ++R C  D  T+  MV AY   GM +     +   +K+ +  +A K
Sbjct:   433 KERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATK 478

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0048868 "pollen tube development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 4.3e-35, P = 4.3e-35
 Identities = 92/315 (29%), Positives = 157/315 (49%)

Query:    30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL----KAFAFDKVQAL 85
             ++ L+S  G+ G    A  L   MKN+  C+PD + Y+ LI + L    KA A +KV+  
Sbjct:   136 YSKLISVMGKKGQTRMAMWLFSEMKNS-GCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query:    86 LSDMS-TQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
             L  M   +  +PN VTYN L+ A+ ++    ++      +      PDV+T N  + A+G
Sbjct:   195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query:   145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV 204
              +G I  ME    + +S   +P I TFN+L+DSYGK   FEKM    + + +     T+ 
Sbjct:   255 KNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLP 314

Query:   205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
             T+N +I  +G+A  + + E++F+ M      PS +T   ++  YG+ G   +   +   +
Sbjct:   315 TFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEV 374

Query:   265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
               SD +L     N +++ Y R   + E   +          PD  TY+ + +AY+   MK
Sbjct:   375 GESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMK 434

Query:   325 NHAKEFQDLVEKMDE 339
                ++ Q L++KM++
Sbjct:   435 ---EQVQILMKKMEK 446

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.6e-33, P = 1.6e-33
 Identities = 93/334 (27%), Positives = 151/334 (45%)

Query:     3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
             GK  +P++A ++   MV  G   +  ++ +L+SAY R G+ D+A  L   M      +PD
Sbjct:   325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK-GTKPD 383

Query:    63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
             V TY+ L+    +A   +   ++  +M   G +PN  T+N  I  YG    F EM     
Sbjct:   384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443

Query:   123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
             ++      PD+ T N  L  FG +G    +   +++ + AG  P   TFN L+ +Y + G
Sbjct:   444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503

Query:   183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
              FE+   V   M     +  + TYN V+ A  R G  +Q E +   M   R KP+ +T C
Sbjct:   504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563

Query:   243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
             SL+ AY +  +   + S+   + +  I    V    LV    +     E +     +++R
Sbjct:   564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623

Query:   303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
             G  PD  T  +MV  Y    M   A    D +++
Sbjct:   624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKE 657

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.0e-32, P = 1.0e-32
 Identities = 85/348 (24%), Positives = 175/348 (50%)

Query:     3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDCQP 61
             G+  + E + EL   M +E    +  ++  +++A  R GL ++    L   M++    QP
Sbjct:   187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQP 245

Query:    62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
             D+ TY+ L+ +C      D+ + +   M+  GI P+  TY+ L++ +G+ +   ++   L
Sbjct:   246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLL 305

Query:   122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
              +M S    PD+ + N  L A+  SG I      + + Q+AG  P+ NT+++LL+ +G++
Sbjct:   306 GEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQS 365

Query:   182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
             G ++ +  +   M+  +      TYNI+I+ FG  G  K++  LF  M  E I+P   T 
Sbjct:   366 GRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETY 425

Query:   242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
               ++ A G  G  E    +L+++  +DI+  +  +  +++A+G+   + E       M +
Sbjct:   426 EGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485

Query:   302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
              G  P   T+ +++ +++  G+    KE + ++ ++ ++ +   R  F
Sbjct:   486 VGSNPSIETFHSLLYSFARGGL---VKESEAILSRLVDSGIPRNRDTF 530

GO:0009507 "chloroplast" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 91/309 (29%), Positives = 155/309 (50%)

Query:     9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
             E A  + + M       N+  F+ LL+ +   G + K F +L+ MK+    +PD   Y++
Sbjct:   391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI-GVKPDRQFYNV 449

Query:    69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
             +I +  K    D        M ++GI P+ VT+NTLID + +       E     M    
Sbjct:   450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509

Query:   129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
             C P   T N  + ++G+  + D M++   K +S GI P++ T   L+D YGK+G F    
Sbjct:   510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAI 569

Query:   189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
               +E M+      +   YN +I+A+ + G  +Q    FR+M S+ +KPS + L SL+ A+
Sbjct:   570 ECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAF 629

Query:   249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
             G   +  +  +VL+++  + +  D V +  L+ A  R+  F ++  V E M   GCKPD+
Sbjct:   630 GEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDR 689

Query:   309 VTYRTMVRA 317
                R+M+R+
Sbjct:   690 KA-RSMLRS 697

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 7.8e-31, P = 7.8e-31
 Identities = 78/325 (24%), Positives = 164/325 (50%)

Query:     4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
             + KQ + AH LF  M       +  +++ L++++G+ G+FD A S L+ M+       D+
Sbjct:   167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDR-VSGDL 225

Query:    64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
               YS LI+   +   + K  ++ S +   GI P+ V YN++I+ YG+AK+F E  L + +
Sbjct:   226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285

Query:   124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
             M      P+  + +  L  +  + +       + + +       + T NI++D YG+   
Sbjct:   286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345

Query:   184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
              ++   +   ++K      +V+YN ++  +G A    +  +LFRLM+ + I+ + VT  +
Sbjct:   346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405

Query:   244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
             +++ YG   + EK  ++++ + +  I  + + ++ ++  +G+         + + ++  G
Sbjct:   406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465

Query:   304 CKPDKVTYRTMVRAYSTNGMKNHAK 328
              + D+V Y+TM+ AY   G+  HAK
Sbjct:   466 VEIDQVLYQTMIVAYERVGLMGHAK 490

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 7.9e-31, P = 7.9e-31
 Identities = 90/335 (26%), Positives = 151/335 (45%)

Query:     5 CKQPEKAH--ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
             C+     H  +L   M D GC  +  ++  L++   + G  D+A   L  M ++  CQP+
Sbjct:   250 CRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPN 308

Query:    63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
             V T++I+++S      +   + LL+DM  +G  P+ VT+N LI+   R  +       L 
Sbjct:   309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILE 368

Query:   123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
             KM    C+P+  + N  L  F    ++D   +  E+  S G  P I T+N +L +  K G
Sbjct:   369 KMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDG 428

Query:   183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
               E    ++  +     S  ++TYN VID   +AG   +   L   MR++ +KP  +T  
Sbjct:   429 KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488

Query:   243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
             SLV      GK ++        +   I  + V FN ++    + +        L  M  R
Sbjct:   489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548

Query:   303 GCKPDKVTYRTMVRAYSTNGMKNHAKEF-QDLVEK 336
             GCKP++ +Y  ++   +  GM   A E   +L  K
Sbjct:   549 GCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 82/315 (26%), Positives = 167/315 (53%)

Query:     6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
             +  ++  E+F+ M ++G   +   F  L+ ++   GL ++A  +   M+     + +   
Sbjct:   323 RSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKK-GIRSNTIV 381

Query:    66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
             Y+ L+ +  K+   ++V+ L ++M  +G++P+  TYN L+DAY R +M  ++  TL++ +
Sbjct:   382 YNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYAR-RMQPDIVETLLREM 440

Query:   126 SE-DCEPDVWTMNCTLRAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGH 183
              +   EP+V +  C + A+G + ++  M    + + +  G++PS +++  L+ +Y  +G 
Sbjct:   441 EDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGW 500

Query:   184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
              EK  A  E M K     ++ TY  V+DAF R+GD  ++  +++LM  E+IK + +T  +
Sbjct:   501 HEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNT 560

Query:   244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
             L+  +   G   +   V+       +    + +N L++AY R    A++  +L+ M    
Sbjct:   561 LLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALN 620

Query:   304 CKPDKVTYRTMVRAY 318
              KPD +TY TM+ A+
Sbjct:   621 LKPDSITYSTMIYAF 635

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 84/336 (25%), Positives = 161/336 (47%)

Query:     2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
             LG+  +   A  +F+     G      +F+AL+SAYGRSGL ++A S+   MK     +P
Sbjct:   243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY-GLRP 301

Query:    62 DVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
             ++ TY+ +I +C K    F +V     +M   G++P+ +T+N+L+    R  ++      
Sbjct:   302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361

Query:   121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
               +M +   E DV++ N  L A    GQ+D   +   +     I P++ +++ ++D + K
Sbjct:   362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421

Query:   181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
             AG F++   +   M+    +   V+YN ++  + + G  ++   + R M S  IK   VT
Sbjct:   422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481

Query:   241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
               +L+  YG  GK +++  V   +    ++ + + ++ L+D Y +   + E   +    +
Sbjct:   482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

Query:   301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
               G + D V Y  ++ A   NG+   A    D + K
Sbjct:   542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577

GO:0003677 "DNA binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP

TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 7.5e-30, P = 7.5e-30
 Identities = 84/328 (25%), Positives = 152/328 (46%)

Query:     1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
             + GK     +A  + + M +  C A++ ++  L++AY R+G   +A  ++E M       
Sbjct:   325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE-MMTKKGVM 383

Query:    61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
             P+  TY+ +I +  KA   D+   L   M   G  PNT TYN ++   G+     EM   
Sbjct:   384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443

Query:   121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
             L  M S  C P+  T N  L   GN G    + + + + +S G +P  +TFN L+ +YG+
Sbjct:   444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503

Query:   181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
              G     S +   M +  ++  + TYN +++A  R GD +  E +   M+S+  KP+  +
Sbjct:   504 CGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETS 563

Query:   241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
                +++ Y   G    +  +   I    I    +    L+ A  + +  A  +    + +
Sbjct:   564 YSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFK 623

Query:   301 QRGCKPDKVTYRTMVRAYSTNGMKNHAK 328
             + G KPD V + +M+  ++ N M + A+
Sbjct:   624 KHGYKPDMVIFNSMLSIFTRNNMYDQAE 651

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKC3	PP424_ARATH	No assigned EC number	0.74	1.0	0.6870	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002494 hypothetical protein (388 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-22
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-20
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-19
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	9e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-06
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-06
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	7e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003
pfam01535	31	pfam01535, PPR, PPR repeat	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 96.5 bits (240), Expect = 7e-22
 Identities = 73/317 (23%), Positives = 143/317 (45%), Gaps = 3/317 (0%)

Query: 9   EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
           + A  + + + + G  A+ + +T L+S   +SG  D  F +   M N    + +V+T+  
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512

Query: 69  LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
           LI  C +A    K       M ++ ++P+ V +N LI A G++         L +M +E 
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572

Query: 129 --CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
              +PD  T+   ++A  N+GQ+D  ++ Y+      I+ +   + I ++S  + G ++ 
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632

Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
             ++ + M+K       V ++ ++D  G AGDL +   + +  R + IK   V+  SL+ 
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
           A  +A   +K   +   I +  +       N L+ A        +   VL  M++ G  P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 307 DKVTYRTMVRAYSTNGM 323
           + +TY  ++ A      
Sbjct: 753 NTITYSILLVASERKDD 769

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 90.7 bits (225), Expect = 7e-20
 Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 18/281 (6%)

Query: 28  QSFTALLSAYGRSGLFDKAFSLLEHMKN---TPDCQPDVNTYSILIKSCLKAFAFDKVQA 84
            +F  L+S    S   D A  +L  ++      DC+     Y+ LI +C K+   D +  
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK----LYTTLISTCAKSGKVDAMFE 493

Query: 85  LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
           +  +M   G+  N  T+  LID   RA   A+       M S++ +PD    N  + A G
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553

Query: 145 NSGQIDTMEKCYE-----KFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY 199
            SG +D   + ++     K ++  I P   T   L+ +   AG  ++   V + + +Y+ 
Sbjct: 554 QSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610

Query: 200 SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259
             T   Y I +++  + GD      ++  M+ + +KP  V   +LV   GHAG  +K   
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670

Query: 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
           +L+      I L TV ++ L+ A    K     K  LE+ +
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAK---NWKKALELYE 708

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 90.3 bits (224), Expect = 1e-19
 Identities = 75/317 (23%), Positives = 148/317 (46%), Gaps = 9/317 (2%)

Query: 4   KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
           K  + +   E+F  MV+ G +AN  +F AL+    R+G   KAF     M+ + + +PD 
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNVKPDR 542

Query: 64  NTYSILIKSCLKAFAFDKVQALLSDMS--TQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
             ++ LI +C ++ A D+   +L++M   T  I P+ +T   L+ A   A    +    +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-VDRAKEV 601

Query: 122 VKMLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
            +M+ E      P+V+T+   + +    G  D     Y+  +  G++P    F+ L+D  
Sbjct: 602 YQMIHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659

Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
           G AG  +K   +++  +K       V+Y+ ++ A   A + K+   L+  ++S +++P+ 
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719

Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
            T+ +L+ A     +  K   VL  +    +  +T+ ++ L+ A  R         +L  
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779

Query: 299 MQQRGCKPDKVTYRTMV 315
            ++ G KP+ V  R + 
Sbjct: 780 AKEDGIKPNLVMCRCIT 796

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 10/240 (4%)

Query: 97  NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156
           +  ++N L+  Y +A  F E      +ML     PDV+T  C LR  G    +    + +
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210

Query: 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
                 G +  ++  N L+  Y K G       V + M +       +++N +I  +   
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFEN 266

Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR-FIDNSDIMLDTVF 275
           G+  +   LF  MR   + P  +T+ S++ A    G  E+LG  +  ++  +   +D   
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSV 325

Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335
            N L+  Y  L  + E + V   M+ +    D V++  M+  Y  NG+ + A E   L+E
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALME 381

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 2/127 (1%)

Query: 3   GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
           G     +KA E+ Q    +G    T S+++L+ A   +  + KA  L E +K+    +P 
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPT 718

Query: 63  VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
           V+T + LI +  +     K   +LS+M   G+ PNT+TY+ L+ A  R     ++ L L+
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA-DVGLDLL 777

Query: 123 KMLSEDC 129
               ED 
Sbjct: 778 SQAKEDG 784

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110
           PDV TY+ LI    K    ++   L ++M  +GI+PN  TY+ LID   +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK 75
          +  ++  L+  Y + G  ++A  L   MK     +P+V TYSILI    K
Sbjct: 2  DVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 76/343 (22%), Positives = 131/343 (38%), Gaps = 35/343 (10%)

Query: 13  ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEH-MKNTPDCQPDVNTYSILIK 71
           ELF  M +   D +  + T+++SA    G  D+      H          DV+  + LI+
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLG--DERLGREMHGYVVKTGFAVDVSVCNSLIQ 331

Query: 72  SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CE 130
             L   ++ + + + S M T+      V++  +I  Y +     +  L    ++ +D   
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEK-NGLPDKALETYALMEQDNVS 386

Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
           PD  T+   L A    G +D   K +E  +  G+   +   N L++ Y K    +K   V
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

Query: 191 MEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
              + +K   SWT      +I          +    FR M    +KP+ VTL + + A  
Sbjct: 447 FHNIPEKDVISWT-----SIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500

Query: 250 HAGK----PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
             G      E    VLR    + I  D    N L+D Y  ++C   M       Q    +
Sbjct: 501 RIGALMCGKEIHAHVLR----TGIGFDGFLPNALLDLY--VRC-GRMNYAWN--QFNSHE 551

Query: 306 PDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348
            D V++  ++  Y  +G  + A E  + + +          PD
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV------NPD 588

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215
           P + T+N L+D Y K G  E+   +   M+K      + TY+I+ID   +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 96  PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145
           P+ VTYNTLID Y +     E      +M     +P+V+T +  +     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 2e-08
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
           +VTYN +ID + + G +++   LF  M+   IKP+  T   L+   
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.9 bits (118), Expect = 3e-08
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
           D V +N L+D Y +     E   +   M++RG KP+  TY  ++   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 34/233 (14%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           M  KCK  +KA E+F  + ++    +  S+T++++    +    +A      M  T   +
Sbjct: 433 MYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LK 486

Query: 61  PDVNTYSILIKSCLKAFAFD-----KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115
           P+  T    + +C +  A           L + +   G  PN      L+D Y R     
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRC---G 538

Query: 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175
            M     +  S   E DV + N  L  +   G+     + + +   +G+ P   TF  LL
Sbjct: 539 RMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

Query: 176 DSYGKAG-------HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221
            +  ++G       +F  M       +KY  +  +  Y  V+D  GRAG L +
Sbjct: 597 CACSRSGMVTQGLEYFHSME------EKYSITPNLKHYACVVDLLGRAGKLTE 643

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
           VTYN +ID   +AG +++   LF+ M+   I+P  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 103/278 (37%)

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
           P ++T+++L+  C  +   D    +L  +   G++ +   Y TLI               
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST------------- 481

Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
                            C       SG++D M + + +  +AG++ +++TF  L+D   +
Sbjct: 482 -----------------CA-----KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519

Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
           AG   K                         AFG  G          +MRS+ +KP  V 
Sbjct: 520 AGQVAK-------------------------AFGAYG----------IMRSKNVKPDRVV 544

Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
             +L+ A G +G  ++   VL                            AEMK      +
Sbjct: 545 FNALISACGQSGAVDRAFDVL----------------------------AEMKA-----E 571

Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
                PD +T   +++A +  G  + AKE   ++ + +
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
           PDV T N  +  +   G+++   K + + +  GI+P++ T++IL+D   K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 99  VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV 133
           VTYNTLID   +A    E      +M     EPDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 58/287 (20%), Positives = 117/287 (40%), Gaps = 24/287 (8%)

Query: 7   QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
              +A  LF+ M ++G DA  ++F  +L A    G       L   +  T     D    
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVS 262

Query: 67  SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAK----MFAEMEL 119
             LI    K    +  + +   M        TV +N+++  Y   G ++    ++ EM  
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318

Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
           + V +       D +T +  +R F     ++  ++ +      G    I     L+D Y 
Sbjct: 319 SGVSI-------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371

Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
           K G  E    V + M + +    ++++N +I  +G  G   +   +F  M +E + P+ V
Sbjct: 372 KWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427

Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFI-DNSDIMLDTVFFNCLVDAYGR 285
           T  +++ A  ++G  E+   + + + +N  I    + + C+++  GR
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474

Length = 697

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236
           + TYN ++ A  +AGD      +   M++  +KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.4 bits (96), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%)

Query: 92  QGIRPNTVTYNTLIDAYGRA-------KMFAEME 118
           +G++P+ VTYNTLID   RA       ++  EME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 65/320 (20%), Positives = 131/320 (40%), Gaps = 46/320 (14%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
           M  KC   E A  +F  M +      T ++ ++L+ Y   G  ++A  L   M+++    
Sbjct: 268 MYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVS 322

Query: 61  PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
            D  T+SI+I+   +    +  +   + +   G   + V    L+D Y +     +    
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382

Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
             +M  ++    + + N  +  +GN G+     + +E+  + G+ P+  TF  +L +   
Sbjct: 383 FDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438

Query: 181 AGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC- 238
           +G  E+   + + M + H      + Y  +I+  GR G L +    + ++R    KP+  
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVN 495

Query: 239 -----VTLCSLVRAYGHAGK----------PEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283
                +T C + +     G+          PEKL + +            V  N L ++ 
Sbjct: 496 MWAALLTACRIHKNL-ELGRLAAEKLYGMGPEKLNNYV------------VLLN-LYNSS 541

Query: 284 GRLKCFAEMKGVLEVMQQRG 303
           GR    AE   V+E ++++G
Sbjct: 542 GRQ---AEAAKVVETLKRKG 558

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 60/337 (17%), Positives = 118/337 (35%), Gaps = 49/337 (14%)

Query: 34  LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG 93
           L A GR     +A  L E ++         +TY  L+++C+   +   V+A+   + + G
Sbjct: 97  LVACGR---HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153

Query: 94  IRPNTVTYNTLIDAYGRAKMFAEME------------------------------LTLVK 123
             P+    N ++  + +  M  +                                  L +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213

Query: 124 MLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
            + E   D EP  + +   LRA    G     ++ +      G+         L+D Y K
Sbjct: 214 EMWEDGSDAEPRTFVV--MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271

Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
            G  E    V + M +     T V +N ++  +   G  ++   L+  MR   +     T
Sbjct: 272 CGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327

Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
              ++R +      E        +  +   LD V    LVD Y +     + + V + M 
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387

Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
           ++    + +++  ++  Y  +G    A E   + E+M
Sbjct: 388 RK----NLISWNALIAGYGNHGRGTKAVE---MFERM 417

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261
           T+ T+N+++     + D+     + RL++   +K  C    +L+     +GK + +  V 
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

Query: 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321
             + N+ +  +   F  L+D   R    A+  G   +M+ +  KPD+V +  ++ A   +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555

Query: 322 GMKNHAKEFQDLVEKMDET 340
           G  + A  F  L E   ET
Sbjct: 556 GAVDRA--FDVLAEMKAET 572

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK 54
          G   +  ++  L+    R+G  D+A  LL+ M+
Sbjct: 2  GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234
           VTYN +I  + +AG L++   LF+ M+ + +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307
           +N L+D   +     E   + + M++RG +PD
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 2  LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR 39
            K  + E+A +LF  M   G   N  +++ L+    +
Sbjct: 13 YCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 29 SFTALLSAYGRSGLFDKAFSLLEHMK 54
          ++ +L+S Y ++G  ++A  L + MK
Sbjct: 2  TYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.4 bits (83), Expect = 0.002
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230
            +VTYN +ID   RAG + +   L   M 
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
          ++  L+    ++G  ++A  L + MK     +PDV
Sbjct: 2  TYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNT 56
           +++ ALL A  ++G  D A ++LE MK +
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKAS 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 99  VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
           VTYN+LI  Y +A    E      +M  +  
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.79
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.73
KOG2076	895	consensus RNA polymerase III transcription factor	99.72
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.71
KOG1126	638	consensus DNA-binding cell division cycle control	99.71
KOG1126	638	consensus DNA-binding cell division cycle control	99.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.67
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.61
PRK12370	553	invasion protein regulator; Provisional	99.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.59
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.58
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.57
PRK12370	553	invasion protein regulator; Provisional	99.56
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.55
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.55
KOG1129	478	consensus TPR repeat-containing protein [General f	99.54
KOG1129	478	consensus TPR repeat-containing protein [General f	99.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.51
KOG2003	840	consensus TPR repeat-containing protein [General f	99.51
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.5
PF13041	50	PPR_2: PPR repeat family	99.47
PF13041	50	PPR_2: PPR repeat family	99.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.4
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.38
PRK11189	296	lipoprotein NlpI; Provisional	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.36
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.32
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.32
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.28
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.27
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.26
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.25
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.24
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.18
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
PRK04841	903	transcriptional regulator MalT; Provisional	99.13
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.13
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.11
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.1
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
PLN02789	320	farnesyltranstransferase	99.08
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.02
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.01
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.01
KOG1125	579	consensus TPR repeat-containing protein [General f	99.01
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.0
PLN02789	320	farnesyltranstransferase	99.0
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.99
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.97
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.95
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.93
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.88
PF12854	34	PPR_1: PPR repeat	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.87
PRK04841	903	transcriptional regulator MalT; Provisional	98.87
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.86
PF12854	34	PPR_1: PPR repeat	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.82
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.82
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.81
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.81
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.81
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.78
PRK15359	144	type III secretion system chaperone protein SscB;	98.74
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.69
PRK15359	144	type III secretion system chaperone protein SscB;	98.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.69
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.55
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.52
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.49
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.47
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.46
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.43
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.42
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.41
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.4
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.39
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.38
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.31
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.29
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.24
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.23
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.2
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.08
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.07
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.07
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.06
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.01
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.01
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.0
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.99
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.99
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.97
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.96
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.95
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.92
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.9
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.86
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.86
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.85
KOG0553	304	consensus TPR repeat-containing protein [General f	97.84
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.79
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.74
KOG0553	304	consensus TPR repeat-containing protein [General f	97.74
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.68
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.67
PF12688	120	TPR_5: Tetratrico peptide repeat	97.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.66
PF12688	120	TPR_5: Tetratrico peptide repeat	97.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.57
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.55
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.54
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.45
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.39
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.35
PF13371	73	TPR_9: Tetratricopeptide repeat	97.3
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.29
PRK10803	263	tol-pal system protein YbgF; Provisional	97.27
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.25
PRK10803	263	tol-pal system protein YbgF; Provisional	97.25
PRK15331	165	chaperone protein SicA; Provisional	97.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.2
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.2
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.15
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.12
PF13371	73	TPR_9: Tetratricopeptide repeat	97.08
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.04
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.0
PRK15331	165	chaperone protein SicA; Provisional	96.98
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.9
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.9
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.89
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.85
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.6
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.59
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.59
KOG3941	406	consensus Intermediate in Toll signal transduction	96.54
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.48
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.45
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.45
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.37
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.3
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.28
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.21
KOG4555	175	consensus TPR repeat-containing protein [Function	96.19
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.19
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.95
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.94
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.84
PF13428	44	TPR_14: Tetratricopeptide repeat	95.76
KOG3941	406	consensus Intermediate in Toll signal transduction	95.74
PF13428	44	TPR_14: Tetratricopeptide repeat	95.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.58
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.53
KOG1585	308	consensus Protein required for fusion of vesicles	95.47
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.39
PRK11906	458	transcriptional regulator; Provisional	95.3
KOG4570	418	consensus Uncharacterized conserved protein [Funct	95.22
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.21
PF13512	142	TPR_18: Tetratricopeptide repeat	95.2
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.13
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.04
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.99
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.99
PF13929	292	mRNA_stabil: mRNA stabilisation	94.97
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.89
KOG4555	175	consensus TPR repeat-containing protein [Function	94.88
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.82
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.52
PRK11906	458	transcriptional regulator; Provisional	94.51
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.48
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.43
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.42
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.37
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.36
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.23
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.2
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.19
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.02
PF13431	34	TPR_17: Tetratricopeptide repeat	93.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.72
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.72
KOG1258	577	consensus mRNA processing protein [RNA processing	93.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.37
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.35
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.34
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.34
PF13431	34	TPR_17: Tetratricopeptide repeat	93.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.22
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.16
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.1
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.86
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	92.79
PF13512	142	TPR_18: Tetratricopeptide repeat	92.72
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.67
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.63
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.56
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.53
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	92.39
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.39
PRK11619	644	lytic murein transglycosylase; Provisional	91.89
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.71
COG3947	361	Response regulator containing CheY-like receiver a	91.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.57
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.33
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.29
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.99
KOG4234	271	consensus TPR repeat-containing protein [General f	90.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.39
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.99
PF13929	292	mRNA_stabil: mRNA stabilisation	89.91
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.85
KOG1585	308	consensus Protein required for fusion of vesicles	89.26
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.18
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.99
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.94
PRK09687	280	putative lyase; Provisional	88.59
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.46
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.06
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.04
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.97
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.87
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.74
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	87.24
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.0
KOG4648	536	consensus Uncharacterized conserved protein, conta	86.32
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.77
KOG1258	577	consensus mRNA processing protein [RNA processing	85.77
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.31
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.59
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	84.44
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.04
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.85
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	83.78
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	83.2
COG1747	711	Uncharacterized N-terminal domain of the transcrip	83.01
PF09477	116	Type_III_YscG: Bacterial type II secretion system	82.57
PF13762	145	MNE1: Mitochondrial splicing apparatus component	81.57
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	81.3
COG3947	361	Response regulator containing CheY-like receiver a	81.27
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.06
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.85
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.54
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.14

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.8e-59  Score=419.15  Aligned_cols=335  Identities=21%  Similarity=0.331  Sum_probs=326.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      |++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ++.||..+|+.+|.+|++.|++++
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHH
Confidence            5788999999999999999999999999999999999999999999999999987 668999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc--cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS--EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF  159 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  159 (349)
                      |.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|..  .++.||..+|+.++.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999976  578999999999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018876          160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV  239 (349)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  239 (349)
                      .+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS  319 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  319 (349)
                      +|+.++.+|++.|++++|.++|+.|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|.
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~  765 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE  765 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhHHHHHHHHHh
Q 018876          320 TNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~  337 (349)
                      +.|+.+.|.++++.+.+.
T Consensus       766 k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        766 RKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHc
Confidence            999999999999988764

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=8.5e-58  Score=411.63  Aligned_cols=335  Identities=23%  Similarity=0.341  Sum_probs=320.6

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCC--------------------------------CchhhHHHHHHHHHcCCChhHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCD--------------------------------ANTQSFTALLSAYGRSGLFDKAFSL   49 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~   49 (349)
                      |++.|++++|.++|++|.+.|+.                                |+..+|+.++.+|++.|+++.|.++
T Consensus       380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~l  459 (1060)
T PLN03218        380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRV  459 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence            34668888888888888877643                                6888999999999999999999999


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCC
Q 018876           50 LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC  129 (349)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  129 (349)
                      |+.|.+. ++.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+
T Consensus       460 f~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv  538 (1060)
T PLN03218        460 LRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV  538 (1060)
T ss_pred             HHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence            9999987 669999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876          130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS--AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN  207 (349)
Q Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  207 (349)
                      .||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|++++|.++|+.|.+.++.|+..+|+
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn  618 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT  618 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence            99999999999999999999999999999986  6789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      .+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|
T Consensus       619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      ++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++++.|.+.
T Consensus       699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999988654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.5e-52  Score=369.26  Aligned_cols=317  Identities=16%  Similarity=0.266  Sum_probs=189.1

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.     .||..+|+.++.+|++.|++++|
T Consensus       134 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A  208 (697)
T PLN03081        134 IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREA  208 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHH
Confidence            4556666666666666666666676677777777777777777777776664     35666777777777777777777


Q ss_pred             HHHHHHHHhCCCCCchHHH-----------------------------------HHHHHHHhccCchHHHHHHHHHHhcc
Q 018876           83 QALLSDMSTQGIRPNTVTY-----------------------------------NTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      .++|++|.+.|+.|+..+|                                   +.|+.+|++.|++++|.++|++|.  
T Consensus       209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--  286 (697)
T PLN03081        209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--  286 (697)
T ss_pred             HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence            7777777666655555544                                   444555555555555555555553  


Q ss_pred             CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876          128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN  207 (349)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  207 (349)
                        .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+
T Consensus       287 --~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~  364 (697)
T PLN03081        287 --EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT  364 (697)
T ss_pred             --CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence              335555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      .++.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus       365 ~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  440 (697)
T PLN03081        365 ALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG  440 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence            55555555555555555555553    24555555555555555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHccCchhhhHHHHH
Q 018876          288 CFAEMKGVLEVMQQ-RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD  332 (349)
Q Consensus       288 ~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  332 (349)
                      ..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|+.++|.++++
T Consensus       441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence            55555555555543 3555555555555555555555555555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.1e-52  Score=370.97  Aligned_cols=323  Identities=19%  Similarity=0.294  Sum_probs=291.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------------------------
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------------------------   57 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------   57 (349)
                      |++.|++++|.++|++|.+    ||..+|+.++.+|++.|++++|+++|++|.+.+                        
T Consensus       168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            5667777777777777753    567777777777777777777777777775542                        


Q ss_pred             ----------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876           58 ----------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus        58 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                                ++.||..+|+.++.+|++.|++++|.++|++|.    .+|..+||.++.+|++.|++++|.++|++|.+.
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~  319 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS  319 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                      334566667888889999999999999999986    458999999999999999999999999999999


Q ss_pred             CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876          128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN  207 (349)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  207 (349)
                      |+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.+    ||..+||
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n  395 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN  395 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999964    6899999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHcc
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRL  286 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~  286 (349)
                      .+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .++.|+..+|+.++.+|++.
T Consensus       396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~  475 (697)
T PLN03081        396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE  475 (697)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999975 69999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       287 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      |++++|.+++++|   ++.|+..+|+.++.+|...|+.+.|.++++.+.++.+
T Consensus       476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p  525 (697)
T PLN03081        476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP  525 (697)
T ss_pred             CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            9999999998765   6789999999999999999999999999998877654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-50  Score=370.57  Aligned_cols=218  Identities=17%  Similarity=0.244  Sum_probs=125.2

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      |+++|++++|.++|++|.+    ||..+||.++.+|++.|++++|+++|++|... ++.||..+|+.++.+|++.|+.+.
T Consensus       232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~  306 (857)
T PLN03077        232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERL  306 (857)
T ss_pred             HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHH
Confidence            4566666666666666642    45566666666666666666666666666654 446666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      +.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus       307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~  382 (857)
T PLN03077        307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ  382 (857)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666555554    34555555555555555555555555555555


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL  228 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  228 (349)
                      .|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++
T Consensus       383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~  449 (857)
T PLN03077        383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN  449 (857)
T ss_pred             hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            5555555555555555555555555555555555555444444444444444444444444444433

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=9.9e-50  Score=364.27  Aligned_cols=324  Identities=19%  Similarity=0.215  Sum_probs=236.2

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      |++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..+.+. ++.||..+|+.++.+|++.|++++
T Consensus       263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~  341 (857)
T PLN03077        263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGE  341 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHH
Confidence            5678899999999999988888888888888888888888888888888888776 567888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      |.++|++|.    .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+
T Consensus       342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~  417 (857)
T PLN03077        342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER  417 (857)
T ss_pred             HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            888888775    3577788888888888888888888888888778888888888888888888888888888888888


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS----------  231 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------  231 (349)
                      .|+.|+..+|+.++.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.|+.++|..+|++|..          
T Consensus       418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~  493 (857)
T PLN03077        418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI  493 (857)
T ss_pred             hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence            77777777777777777777777777777776643    2333344444333333333333333333321          


Q ss_pred             ------------------------CC------------------------------CCCcHHHHHHHHHHHHhcCChhhH
Q 018876          232 ------------------------ER------------------------------IKPSCVTLCSLVRAYGHAGKPEKL  257 (349)
Q Consensus       232 ------------------------~~------------------------------~~~~~~~~~~l~~~~~~~~~~~~a  257 (349)
                                              .|                              ..||..+|++++.+|++.|+.++|
T Consensus       494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A  573 (857)
T PLN03077        494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA  573 (857)
T ss_pred             HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence                                    11                              134566777777777777777777


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876          258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ-QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV  334 (349)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  334 (349)
                      .++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|+.++|.++++.+
T Consensus       574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            7777777777777777777777777777777777777777776 4567777777777777777777777777666654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.6e-24  Score=202.24  Aligned_cols=320  Identities=13%  Similarity=0.014  Sum_probs=194.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      +.|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+.+.+..  +.+...+..+..++...|++++|.
T Consensus       579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~  655 (899)
T TIGR02917       579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAI  655 (899)
T ss_pred             HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHH
Confidence            4455555555555554432 3344555555555555555555555555555432  234445555555555555555555


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG  163 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  163 (349)
                      ..++++.+.. +.+..++..+...+...|++++|.++++.+.... +.+...+..+...+...|++++|.+.+..+...+
T Consensus       656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  733 (899)
T TIGR02917       656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA  733 (899)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            5555555442 2234555555555555666666666665555443 3344555555666666666666666666666543


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018876          164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS  243 (349)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  243 (349)
                        |+..++..+..++.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...|+++.+.. +.+..++..
T Consensus       734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~  809 (899)
T TIGR02917       734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN  809 (899)
T ss_pred             --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence              3334555566666666666666666666665542 356666666666777777777777777766554 455666666


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM  323 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  323 (349)
                      +...+...|+ .+|...++.+.+..+ -++.++..+...+...|++++|...++++.+.+.. +..++..+..++.+.|+
T Consensus       810 l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~  886 (899)
T TIGR02917       810 LAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR  886 (899)
T ss_pred             HHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence            6777777777 567777776665432 24556666777777777888888888777776543 67777777777888888


Q ss_pred             hhhhHHHHHHHH
Q 018876          324 KNHAKEFQDLVE  335 (349)
Q Consensus       324 ~~~a~~~~~~~~  335 (349)
                      +++|.+.++.+.
T Consensus       887 ~~~A~~~~~~~~  898 (899)
T TIGR02917       887 KAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHHHh
Confidence            888877777653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=2.8e-24  Score=181.25  Aligned_cols=295  Identities=11%  Similarity=0.051  Sum_probs=182.9

Q ss_pred             HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---hHHHHHHHHHHhc
Q 018876           34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN---TVTYNTLIDAYGR  110 (349)
Q Consensus        34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  110 (349)
                      ...+...|++++|+..|+++.+..  +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            334556677777777777776652  34455666666777777777777777777665432111   2345666667777


Q ss_pred             cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 018876          111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~  186 (349)
                      .|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++
T Consensus       120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            777777777777776543 34556666677777777777777777777666543221    1234455566666777777


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      |...++++.+... .+...+..+...+.+.|++++|..+++++.+.+......++..++.++...|++++|...++.+.+
T Consensus       199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777665542 245556666667777777777777777766543222234566666777777777777777777665


Q ss_pred             CCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---cCchhhhHHHHHHHHH
Q 018876          267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST---NGMKNHAKEFQDLVEK  336 (349)
Q Consensus       267 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~  336 (349)
                      ..  |+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++...++.+.+
T Consensus       278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            43  34444566677777777777777777766655  4666666666665543   3456666665555544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=2e-23  Score=194.84  Aligned_cols=324  Identities=14%  Similarity=-0.001  Sum_probs=142.9

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      +.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.+..  +.+...+..+...+...|++++|.
T Consensus       443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~  519 (899)
T TIGR02917       443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAI  519 (899)
T ss_pred             hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            445555555555555443 23344455555555555555555555555544432  223333444444444444444444


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC---------------------------------CC
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------------------CE  130 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~  130 (349)
                      +.++++...+ +.+..++..+...+.+.|+.++|...++++...+                                 .+
T Consensus       520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  598 (899)
T TIGR02917       520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP  598 (899)
T ss_pred             HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            4444444332 1233333334444444444444444443333221                                 12


Q ss_pred             cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876          131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI  210 (349)
Q Consensus       131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  210 (349)
                      .+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+..++..++
T Consensus       599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~  676 (899)
T TIGR02917       599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLA  676 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence            233344444444444444444444444444332 12333344444444444444444444444443321 1334444444


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876          211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA  290 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  290 (349)
                      ..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+....  |+..++..++..+.+.|+++
T Consensus       677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~  753 (899)
T TIGR02917       677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA  753 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence            44444444444444444443332 2333444444444445555555555555444432  22233444444455555555


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       291 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      +|.+.++.+.+.. +.+...+..+...|...|++++|.+.++.+.+.
T Consensus       754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            5555555544432 224444555555555555555555555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=3.8e-23  Score=174.35  Aligned_cols=309  Identities=17%  Similarity=0.136  Sum_probs=257.1

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChh
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFD   80 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~   80 (349)
                      ...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+...+  ....+..+...+.+.|+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            45789999999999999874 45677899999999999999999999999987632111  1356788899999999999


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHH
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCY  156 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~  156 (349)
                      +|..+|+++.+.. +++..+++.++..+...|++++|.+.++.+.+.+..+.    ...+..+...+...|++++|.+.+
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999998863 45778899999999999999999999999987653332    224556777888999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018876          157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP  236 (349)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (349)
                      +++.+.. +.+...+..+...+.+.|++++|...++++.+.+......+++.++.+|...|++++|...++.+.+.  .|
T Consensus       204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p  280 (389)
T PRK11788        204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP  280 (389)
T ss_pred             HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence            9998864 34567788889999999999999999999987654434567889999999999999999999999876  45


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 018876          237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRT  313 (349)
Q Consensus       237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~  313 (349)
                      +...+..++..+.+.|++++|..+++.+.+.  .|+...++.++..+..   .|+.+++..++++|.+.++.|++.    
T Consensus       281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----  354 (389)
T PRK11788        281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR----  354 (389)
T ss_pred             CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC----
Confidence            6666788999999999999999999998876  4788888888888775   568999999999999988888776    


Q ss_pred             HHHHHHccCch
Q 018876          314 MVRAYSTNGMK  324 (349)
Q Consensus       314 l~~~~~~~g~~  324 (349)
                        ..|.++|..
T Consensus       355 --~~c~~cg~~  363 (389)
T PRK11788        355 --YRCRNCGFT  363 (389)
T ss_pred             --EECCCCCCC
Confidence              346666643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=1.8e-21  Score=172.15  Aligned_cols=328  Identities=9%  Similarity=-0.025  Sum_probs=269.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      .+.|++++|..+++...... +-+...+..++.+....|+++.|...|+++....  +.+...+..+...+...|++++|
T Consensus        53 ~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~A  129 (656)
T PRK15174         53 LRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATV  129 (656)
T ss_pred             HhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHH
Confidence            46899999999999998863 4556677777788888999999999999999874  55677888899999999999999


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      ...++++.... +.+...+..+..++...|++++|...++++...... +...+..+ ..+...|++++|...++.+.+.
T Consensus       130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~  206 (656)
T PRK15174        130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF  206 (656)
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence            99999998863 346778888999999999999999999988766422 23333333 3478899999999999998876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCcH
Q 018876          163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ----MEYLFRLMRSERIKPSC  238 (349)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~  238 (349)
                      ...++...+..+...+...|++++|...++++...... +...+..+...+...|++++    |...+++..+.. +.+.
T Consensus       207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~  284 (656)
T PRK15174        207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNV  284 (656)
T ss_pred             CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCH
Confidence            54445555566677889999999999999999887643 67888889999999999986    899999988764 4567


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHH
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYRTMVRA  317 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~  317 (349)
                      ..+..+...+...|++++|...++.+....+. +...+..+..++.+.|++++|...++.+...  .|+. ..+..+..+
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a  361 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence            78899999999999999999999999887643 5667788899999999999999999999876  3444 334445678


Q ss_pred             HHccCchhhhHHHHHHHHHhHHhh
Q 018876          318 YSTNGMKNHAKEFQDLVEKMDETC  341 (349)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~  341 (349)
                      +...|+.++|...++...+..+..
T Consensus       362 l~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhChhh
Confidence            899999999999999887776543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=6.4e-20  Score=162.72  Aligned_cols=330  Identities=10%  Similarity=-0.016  Sum_probs=218.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.+.|++++|+..|++..+.  .|+...|..+..+|.+.|++++|++.++...+..  +.+...|..+..++...|++++
T Consensus       137 ~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~e  212 (615)
T TIGR00990       137 AYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYAD  212 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHH
Confidence            34578888888888888765  4677778888888888888888888888887763  4456677777777777777777


Q ss_pred             HHHHHHH-------------------------------------------------------------------------
Q 018876           82 VQALLSD-------------------------------------------------------------------------   88 (349)
Q Consensus        82 a~~~~~~-------------------------------------------------------------------------   88 (349)
                      |...|..                                                                         
T Consensus       213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (615)
T TIGR00990       213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN  292 (615)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence            6543322                                                                         


Q ss_pred             ---------------------------HHhCC-CCC-chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH
Q 018876           89 ---------------------------MSTQG-IRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT  139 (349)
Q Consensus        89 ---------------------------~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  139 (349)
                                                 ....+ ..| ....++.+...+...|++++|...+++..... +.....|..+
T Consensus       293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l  371 (615)
T TIGR00990       293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR  371 (615)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence                                       22111 011 12234444455555666666766666666542 2234456666


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876          140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL  219 (349)
Q Consensus       140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  219 (349)
                      ...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+..+. +...+..+...+.+.|++
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~  449 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCH
Confidence            666677777777777777766653 335666777777777777777777777777665432 456666677777777777


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH------HHHHHHHHHHccCChHHHH
Q 018876          220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV------FFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~  293 (349)
                      ++|...++...... +.+...++.+...+...|++++|...++.........+..      .++..+..+...|++++|.
T Consensus       450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~  528 (615)
T TIGR00990       450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE  528 (615)
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence            78877777776542 3445677777777778888888888887776643221111      1222223334467888888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .++++...... .+...+..+...+.+.|++++|.++++...++.++
T Consensus       529 ~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       529 NLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            88888776642 24456788888899999999999988887776553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.90  E-value=1.7e-19  Score=159.63  Aligned_cols=292  Identities=10%  Similarity=0.014  Sum_probs=241.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ...|++++|.+.|+++.+.. |.+...+..+...+...|++++|...++++....  +.+...+..+...+...|++++|
T Consensus        87 l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA  163 (656)
T PRK15174         87 LASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQA  163 (656)
T ss_pred             hhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHH
Confidence            45899999999999999874 5567889999999999999999999999998863  45677888999999999999999


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      ...++.+...... +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++++.+.
T Consensus       164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~  241 (656)
T PRK15174        164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR  241 (656)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999988776432 33334333 347889999999999999887653344455556677889999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876          163 GIQPSINTFNILLDSYGKAGHFEK----MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC  238 (349)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  238 (349)
                      . +.+...+..+...+...|++++    |...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus       242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~  318 (656)
T PRK15174        242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP  318 (656)
T ss_pred             C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            5 4467888889999999999986    89999999887644 77889999999999999999999999998764 4456


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      ..+..+..++...|++++|...++.+...++. +...+..+..++...|++++|...|++..+..
T Consensus       319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            67788889999999999999999999876532 23344556778999999999999999998773

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.88  E-value=2.3e-18  Score=162.52  Aligned_cols=328  Identities=13%  Similarity=0.045  Sum_probs=212.9

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH------------HHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS------------ILI   70 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~   70 (349)
                      ...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.....++...|.            ...
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            45799999999999998864 45788899999999999999999999999887632222222221            224


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH------------
Q 018876           71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC------------  138 (349)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------  138 (349)
                      ..+.+.|++++|...|+++.... +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..            
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence            46678899999999999998874 3456677788899999999999999999988653 222222222            


Q ss_pred             ------------------------------HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018876          139 ------------------------------TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS  188 (349)
Q Consensus       139 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  188 (349)
                                                    +...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|.
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                          2233456788888998888888764 336677778888899999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------------------------------
Q 018876          189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------------------------------------  232 (349)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------  232 (349)
                      ..++++.+..+. +...+..+...+...++.++|...++.+...                                    
T Consensus       516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            999888765422 2322222222222333333333332221100                                    


Q ss_pred             ---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH
Q 018876          233 ---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV  309 (349)
Q Consensus       233 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  309 (349)
                         ..+.+...+..+...+...|++++|...++.+.+..+ .+...+..++..|...|++++|.+.++...+.. +.+..
T Consensus       595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~  672 (1157)
T PRK11447        595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN  672 (1157)
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence               0123334455556666666666666666666665543 245566666666666666666666666655432 11344


Q ss_pred             HHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          310 TYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      .+..+..++...|++++|.++++.+.+.
T Consensus       673 ~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        673 TQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            4555555666666666666666665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.87  E-value=6.8e-18  Score=159.34  Aligned_cols=321  Identities=12%  Similarity=0.049  Sum_probs=214.3

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      .+.|++++|++.|++..+.. +.+...+..+..++...|++++|++.|+++.+..  +.+...+..+...+. .++.++|
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A  437 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKA  437 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHH
Confidence            46799999999999999874 4567788889999999999999999999998763  344555555544442 2344555


Q ss_pred             HHHHHHHHhCCCC--------CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018876           83 QALLSDMSTQGIR--------PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK  154 (349)
Q Consensus        83 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  154 (349)
                      ..+++.+......        .....+..+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|..
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4444433221000        001122333344444455555555555544432 2233334444444555555555555


Q ss_pred             HHHHHHhcCCCCCHHHH--------------------------------------------HHHHHHHHhcCCHHHHHHH
Q 018876          155 CYEKFQSAGIQPSINTF--------------------------------------------NILLDSYGKAGHFEKMSAV  190 (349)
Q Consensus       155 ~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~a~~~  190 (349)
                      .++++.+.. +.+...+                                            ..+...+...|+.++|..+
T Consensus       517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~  595 (1157)
T PRK11447        517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL  595 (1157)
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            555544322 1122222                                            1233445566666667666


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876          191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM  270 (349)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  270 (349)
                      ++.     .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..+...+...|++++|...++.+.+... 
T Consensus       596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-  668 (1157)
T PRK11447        596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-  668 (1157)
T ss_pred             HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence            651     23456677788899999999999999999998765 55678899999999999999999999998887543 


Q ss_pred             chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC--C---CHHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876          271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK--P---DKVTYRTMVRAYSTNGMKNHAKEFQDLVEK  336 (349)
Q Consensus       271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  336 (349)
                      .+...+..+..++...|++++|.++++.+......  |   +...+..+...+...|++++|...++....
T Consensus       669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35566777888999999999999999999876322  2   224566677889999999999999998754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=2.2e-17  Score=146.67  Aligned_cols=304  Identities=13%  Similarity=-0.015  Sum_probs=242.3

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY  108 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (349)
                      .+......+.+.|++++|+..|++....   .|+...|..+..++.+.|++++|+..++..++.. +.+...+..+..+|
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~  204 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            3556777889999999999999999876   5788899999999999999999999999999874 33667888899999


Q ss_pred             hccCchHHHHHHHHHHhccCC-----------------------------CcchhhHHHHHH------------------
Q 018876          109 GRAKMFAEMELTLVKMLSEDC-----------------------------EPDVWTMNCTLR------------------  141 (349)
Q Consensus       109 ~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------  141 (349)
                      ...|++++|...+......+.                             +++...+..+..                  
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            999999999876544321110                             010001110000                  


Q ss_pred             ------------H------HHccCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018876          142 ------------A------FGNSGQIDTMEKCYEKFQSAG-I-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW  201 (349)
Q Consensus       142 ------------~------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  201 (349)
                                  .      ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...+++..+..+. 
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence                        0      012357888999999988764 2 234566788888889999999999999999887533 


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      ....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++...+..+ .+...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence            46788888999999999999999999998764 45678889999999999999999999999988764 36777888999


Q ss_pred             HHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      ++.+.|++++|...+++..+.. +.+...+..+..++...|++++|.+.++...++.+.
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence            9999999999999999998763 235788899999999999999999999998877543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=8.9e-19  Score=144.05  Aligned_cols=325  Identities=12%  Similarity=0.097  Sum_probs=217.0

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCChhH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI-LIKSCLKAFAFDK   81 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~   81 (349)
                      -..|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+.   .|+.....+ +...+...|+..+
T Consensus       127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~e  202 (966)
T KOG4626|consen  127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEE  202 (966)
T ss_pred             HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccch
Confidence            35788999999999998873 446888999999999999999998888887765   344433222 2222333445555


Q ss_pred             HHHHHHHHHhCC--------------------------------CCCc-hHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876           82 VQALLSDMSTQG--------------------------------IRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSED  128 (349)
Q Consensus        82 a~~~~~~~~~~~--------------------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  128 (349)
                      |...+.+.++..                                +.|+ ...|-.|...|...+.++.|...|.+.....
T Consensus       203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr  282 (966)
T KOG4626|consen  203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR  282 (966)
T ss_pred             hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence            554444444331                                1121 2344445555555555555555555544332


Q ss_pred             CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018876          129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI  208 (349)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (349)
                       +.....+..+...|...|.++.|+..|++..+.. +.=...|+.|..++-..|++.+|.+.+.+....... .....+.
T Consensus       283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N  359 (966)
T KOG4626|consen  283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN  359 (966)
T ss_pred             -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence             2234445555555666777777777777776653 223556777888888888888888888777776533 5667777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHccC
Q 018876          209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLK  287 (349)
Q Consensus       209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g  287 (349)
                      |...+...|.++.|..+|....+.. +--....+.|...|-.+|++++|...+++.....  |+ ...|+.+...|-..|
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhh
Confidence            8888888888888888887776542 2224567777778888888888888888877643  33 457777888888888


Q ss_pred             ChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          288 CFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +.+.|...+.+.+..  .|. ...++.|...|..+|+..+|+..++...++++
T Consensus       437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            888888888877765  343 46677888888888888888888887777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=7.9e-17  Score=145.80  Aligned_cols=327  Identities=10%  Similarity=-0.012  Sum_probs=182.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      .+.|++++|.+++++..+.. +.+...+..+..++...|++++|+..++++.+..  +.+.. +..+..++...|+.++|
T Consensus        60 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~A  135 (765)
T PRK10049         60 RNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDE  135 (765)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHH
Confidence            34566666666666666542 3445555666666666666777766666666542  33444 65666666666677777


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHH----------------------------------------
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV----------------------------------------  122 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------  122 (349)
                      ...++++.+.. +-+...+..+..++...+..+.|++.++                                        
T Consensus       136 l~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~  214 (765)
T PRK10049        136 LRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR  214 (765)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence            77666666653 2233333444444444444433333222                                        


Q ss_pred             ------HHhcc-CCCcchh-hHH----HHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 018876          123 ------KMLSE-DCEPDVW-TMN----CTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKAGHFEKMSA  189 (349)
Q Consensus       123 ------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~  189 (349)
                            .+.+. ...|+.. .+.    ..+..+...|++++|...|+.+.+.+.+ |+. ....+...+...|++++|..
T Consensus       215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~  293 (765)
T PRK10049        215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS  293 (765)
T ss_pred             HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence                  22211 0011110 000    0122334556677777777776665422 221 12224556667777777777


Q ss_pred             HHHHHHhcCCCC---chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCc---HHHHHHHHHHHHhcC
Q 018876          190 VMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-----------KPS---CVTLCSLVRAYGHAG  252 (349)
Q Consensus       190 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~  252 (349)
                      .|+++.+.....   .......+..++...|++++|..+++.+.....           .|+   ...+..+...+...|
T Consensus       294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g  373 (765)
T PRK10049        294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN  373 (765)
T ss_pred             HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence            777665443211   123344555566677777777777776654321           112   123445556666777


Q ss_pred             ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCchhhhHHHH
Q 018876          253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                      +.++|+..++.+....+ -+...+..+...+...|++++|++.+++.....  |+ ...+......+...|++++|...+
T Consensus       374 ~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        374 DLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            77777777777766543 356667777777777777777777777777653  33 455556666677777777777777


Q ss_pred             HHHHHhH
Q 018876          332 DLVEKMD  338 (349)
Q Consensus       332 ~~~~~~~  338 (349)
                      +.+.+..
T Consensus       451 ~~ll~~~  457 (765)
T PRK10049        451 DDVVARE  457 (765)
T ss_pred             HHHHHhC
Confidence            7666543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=1.4e-16  Score=144.29  Aligned_cols=330  Identities=9%  Similarity=0.008  Sum_probs=245.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ...|+.++|++++....... +.+...+..+...+...|++++|.++|++..+..  +.+...+..+...+...|++++|
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA  102 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEA  102 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence            45799999999999998742 4566679999999999999999999999988763  55677788888999999999999


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH--------
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK--------  154 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--------  154 (349)
                      ...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|++        
T Consensus       103 ~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~  179 (765)
T PRK10049        103 LVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLT  179 (765)
T ss_pred             HHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence            99999998873 34556 8888899999999999999999999874 3344444555555555555554443        


Q ss_pred             --------------------------------------HHHHHHhc-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHH
Q 018876          155 --------------------------------------CYEKFQSA-GIQPSIN-TFN----ILLDSYGKAGHFEKMSAV  190 (349)
Q Consensus       155 --------------------------------------~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~  190 (349)
                                                            .++.+.+. ...|+.. .+.    ..+..+...|++++|+..
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~  259 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE  259 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                                                  33343322 1122211 111    113345677899999999


Q ss_pred             HHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          191 MEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       191 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      |+.+.+.+.+ |+. ....+..++...|++++|...|+.+.+.....   .......+..++...|++++|...++.+..
T Consensus       260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~  338 (765)
T PRK10049        260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN  338 (765)
T ss_pred             HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence            9999887532 322 22225678899999999999999987643111   134556677788999999999999998876


Q ss_pred             CCC-----------Cch---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHH
Q 018876          267 SDI-----------MLD---TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD  332 (349)
Q Consensus       267 ~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  332 (349)
                      ..+           .|+   ...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.++
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~  417 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK  417 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            532           122   2355677888999999999999999998873 3367888899999999999999999999


Q ss_pred             HHHHhHHh
Q 018876          333 LVEKMDET  340 (349)
Q Consensus       333 ~~~~~~~~  340 (349)
                      ...+..+.
T Consensus       418 ~al~l~Pd  425 (765)
T PRK10049        418 KAEVLEPR  425 (765)
T ss_pred             HHHhhCCC
Confidence            88887653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.4e-17  Score=137.21  Aligned_cols=303  Identities=14%  Similarity=0.107  Sum_probs=254.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      ..|++++|...+.+..+.. +--..+|..|...+-.+|++..|+.-|++..+.+  +.-...|-.|...|...+.+++|.
T Consensus       196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Av  272 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAV  272 (966)
T ss_pred             hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHH
Confidence            4688888888888877762 3346679999999999999999999999998763  233578999999999999999999


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG  163 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  163 (349)
                      ..+.+..... +-....+..+...|...|..+.|+..|++.++.. +.-...|+.+..++-..|+..+|.+.|.+.....
T Consensus       273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            9999988763 3356678888889999999999999999999764 3336789999999999999999999999998874


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHH
Q 018876          164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLC  242 (349)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~  242 (349)
                       +......+.|...+...|.+++|..+|....+..+. -....+.|...|-+.|++++|+..+++.+..  .|+ ...|+
T Consensus       351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~  426 (966)
T KOG4626|consen  351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS  426 (966)
T ss_pred             -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence             335677889999999999999999999998876533 4677899999999999999999999998764  555 57899


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAY  318 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~  318 (349)
                      .+...|-..|+.+.|.+.+.+.+..++. -...++.|...|-..|+..+|+.-++...+.  +|| +..|..++.+.
T Consensus       427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL  500 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence            9999999999999999999999886542 3567888999999999999999999999876  565 44555565554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=5.6e-15  Score=131.99  Aligned_cols=169  Identities=9%  Similarity=0.033  Sum_probs=112.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD   80 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (349)
                      ..+.|+++.|++.|++..+..  |+. .....++..+...|+.++|+..+++....  .+........+...+...|+++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHH
Confidence            357888999999999888763  443 22227777788888888888888888722  1333444444466778888888


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ  160 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  160 (349)
                      +|.++|+++.+.. +-+...+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|++.++++.
T Consensus       120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            8888888888874 335666667778888888888888888888765  4444445444444444555555777777777


Q ss_pred             hcCCCCCHHHHHHHHHHH
Q 018876          161 SAGIQPSINTFNILLDSY  178 (349)
Q Consensus       161 ~~~~~~~~~~~~~l~~~~  178 (349)
                      +.. +.+...+..++.++
T Consensus       197 ~~~-P~n~e~~~~~~~~l  213 (822)
T PRK14574        197 RLA-PTSEEVLKNHLEIL  213 (822)
T ss_pred             HhC-CCCHHHHHHHHHHH
Confidence            653 22344433333333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=3.7e-15  Score=135.80  Aligned_cols=267  Identities=9%  Similarity=-0.048  Sum_probs=147.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018876           62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR  141 (349)
Q Consensus        62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  141 (349)
                      +...|..+..++.. ++.++|...+.+....  .|+......+...+...|++++|...++++...  +|+...+..+..
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~  550 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN  550 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence            44555555555554 5666666655555544  244333333334444666666666666665443  233333444555


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                      .+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+..  |+...+..+..++.+.|++++
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence            5666666666666666666543 2222223233333334466666666666666543  345566666666666666666


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      |...+++..+.. +.+...+..+..++...|++++|...++...+..+ -+...+..+..++...|++++|...+++..+
T Consensus       628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            666666666543 33445555566666666666666666666665543 2455666666666666666666666666665


Q ss_pred             cCCCCCH-HHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          302 RGCKPDK-VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       302 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      ..  |+. .+.........+..+++.+.+.+++...++..
T Consensus       706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        706 DI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             cC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            42  322 33334444444555555555555555544443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.79  E-value=7.9e-15  Score=131.04  Aligned_cols=328  Identities=11%  Similarity=0.033  Sum_probs=200.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      ..|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++.+...   .|+...+..++..+...++..+|+
T Consensus       114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL  189 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDAL  189 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHH
Confidence            4577777777777777663 344556666666677777777777777777655   355444533433333345554577


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHH------------------------------------------
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL------------------------------------------  121 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------------------  121 (349)
                      +.++++.+.. +-+...+..++.++.+.|-...|.++.                                          
T Consensus       190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d  268 (822)
T PRK14574        190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD  268 (822)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            7777777663 224444455555554444333333222                                          


Q ss_pred             ------HHHhcc-CCCcch-h----hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018876          122 ------VKMLSE-DCEPDV-W----TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA  189 (349)
Q Consensus       122 ------~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  189 (349)
                            +.+... +..|.. .    ...-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++++|..
T Consensus       269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~  348 (822)
T PRK14574        269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP  348 (822)
T ss_pred             HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence                  222211 011211 1    1122344566677777777778777777755555567777788888888888888


Q ss_pred             HHHHHHhcCC-----CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCcH-HHHHHHHHHHHh
Q 018876          190 VMEYMQKYHY-----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-------------KPSC-VTLCSLVRAYGH  250 (349)
Q Consensus       190 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~  250 (349)
                      +++.+.....     +++......|..++...+++++|..+++.+.+...             .||- ..+..++..+..
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~  428 (822)
T PRK14574        349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA  428 (822)
T ss_pred             HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            8877755331     22333346677777788888888888887765211             1111 223345566777


Q ss_pred             cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876          251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  330 (349)
                      .|+..+|++.++.+....+ -|......+...+...|.+..|...++...... +-+..+......++...|++++|..+
T Consensus       429 ~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        429 LNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELL  506 (822)
T ss_pred             cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHH
Confidence            7888888888888766553 477777778888888888888888886666552 22455666777777777888888777


Q ss_pred             HHHHHHhH
Q 018876          331 QDLVEKMD  338 (349)
Q Consensus       331 ~~~~~~~~  338 (349)
                      .+.+....
T Consensus       507 ~~~l~~~~  514 (822)
T PRK14574        507 TDDVISRS  514 (822)
T ss_pred             HHHHHhhC
Confidence            76554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.79  E-value=4.9e-15  Score=124.16  Aligned_cols=287  Identities=10%  Similarity=0.027  Sum_probs=222.1

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH--HHHHHHhccCchH
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPDVNT-YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN--TLIDAYGRAKMFA  115 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~  115 (349)
                      ..|+++.|.+.+....+..   +++.. |.....+..+.|+++.+...+.++.+.  .|+.....  .....+...|+++
T Consensus        96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence            3699999998888766542   23333 333455558899999999999999875  45554333  3367888999999


Q ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 018876          116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMS  188 (349)
Q Consensus       116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~  188 (349)
                      .|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...
T Consensus       171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999998876 556778888999999999999999999999988655322       12333444444555666777


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      ++++.+.+.- +.++.....+...+...|+.++|..++++..+.  +|+....  ++.+....++++++.+..+...+..
T Consensus       250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence            7777665432 347888889999999999999999999998873  4555332  2334445699999999999988776


Q ss_pred             CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      + -|+..+..+...+.+.|++++|.+.|+...+.  .|+..++..+..++.+.|+.++|.+.++.-..+..
T Consensus       325 P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        325 G-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4 37778889999999999999999999999986  68999999999999999999999999987665543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=6.7e-15  Score=116.42  Aligned_cols=308  Identities=12%  Similarity=0.139  Sum_probs=187.1

Q ss_pred             CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH
Q 018876           24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT  103 (349)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  103 (349)
                      +.+..++..+|.++++--..++|.+++++-....+ +.+..+||.+|.+-.-..+    .+++.+|....+.||..|||.
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence            44677888888888888888888888888777644 7788888888766544332    677888888888888888888


Q ss_pred             HHHHHhccCchHH----HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH-HHHHHHHHHhc----CC----CCCHHH
Q 018876          104 LIDAYGRAKMFAE----MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT-MEKCYEKFQSA----GI----QPSINT  170 (349)
Q Consensus       104 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~  170 (349)
                      ++++..+.|+++.    |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++..+...    .+    +.|...
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            8888888887654    45667777788888888888888888887777644 34444443321    11    124445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH------------------------------------------HhcCCCCchHHHHH
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYM------------------------------------------QKYHYSWTIVTYNI  208 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~------------------------------------------~~~~~~~~~~~~~~  208 (349)
                      |...+..|.+..+.+-|.++..-+                                          ...-+-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            555666666666666555554433                                          22223334444444


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-Ch---hh----------HHHHHH-------HHhhC
Q 018876          209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-KP---EK----------LGSVLR-------FIDNS  267 (349)
Q Consensus       209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~----------a~~~~~-------~~~~~  267 (349)
                      ++++....|+++-.-++|.+++..|..-.......++..+++.. .+   +.          |..+++       ++.. 
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-  517 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-  517 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence            44444445555555555555554443333333223333333222 11   00          001110       1111 


Q ss_pred             CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC----KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                       ........+.+.-.+.+.|+.++|.+++..+.+.+-    .|......-++..-.+.+.+..|...++.+...+
T Consensus       518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence             122345566777778888999999998888865532    2333344466667777888888888888775443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.78  E-value=3.1e-14  Score=129.87  Aligned_cols=324  Identities=14%  Similarity=0.049  Sum_probs=244.0

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCC---hh
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-PDCQPDVNTYSILIKSCLKAFA---FD   80 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~   80 (349)
                      .+...++.+.+..|.+.. +-+......+.-...+.|+.++|.++|+..... +...++......++..+.+.+.   ..
T Consensus       355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence            456667777777777652 446677777777788999999999999988762 2223444455567777776655   23


Q ss_pred             HHHHH----------------------HHHHHhC-CC-CC--chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh
Q 018876           81 KVQAL----------------------LSDMSTQ-GI-RP--NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW  134 (349)
Q Consensus        81 ~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  134 (349)
                      ++..+                      .+..... +. ++  +...|..+..++.. ++.++|...+.+....  .|+..
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~  510 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW  510 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence            33222                      2222111 11 33  56778888877776 7888999988888765  45554


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG  214 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (349)
                      ....+...+...|++++|...|+++...  +|+...+..+..++.+.|+.++|...++...+..+. +...+..+.....
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~  587 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY  587 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence            4444455557899999999999998665  444455667778889999999999999999887532 3344444444455


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876          215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG  294 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  294 (349)
                      ..|++++|...+++..+.  .|+...+..+..++.+.|++++|...++......+. +...++.+..++...|++++|..
T Consensus       588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~  664 (987)
T PRK09782        588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSRE  664 (987)
T ss_pred             hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence            669999999999999875  456888999999999999999999999999988653 67788899999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       295 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      .+++..+... -+...+..+..++...|++++|...++...+..+
T Consensus       665 ~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        665 MLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999998743 3678899999999999999999999999887765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.77  E-value=8.6e-15  Score=122.73  Aligned_cols=284  Identities=10%  Similarity=0.012  Sum_probs=221.1

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHH-HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHhcCChhH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTAL-LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS--ILIKSCLKAFAFDK   81 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~   81 (349)
                      .|++++|.+.+....+..  +++..+..+ ..+..+.|+++.|.+.+.++.+.   .|+.....  .....+...|+++.
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence            599999998888766642  233333333 44458999999999999999876   46654333  33678889999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHH
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEK  154 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~  154 (349)
                      |...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.       ..|..++.......+.+...+
T Consensus       172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999885 447788889999999999999999999999987644322       233334444445556677777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018876          155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI  234 (349)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  234 (349)
                      +++.+.+. .+.+......+...+...|+.++|..++++..+..  |+....  ++.+....++.+++.+..+...+.. 
T Consensus       251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-  324 (398)
T PRK10747        251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-  324 (398)
T ss_pred             HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence            77776544 35578888999999999999999999999988743  444322  2334446699999999999988664 


Q ss_pred             CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +-|......+.+.|...+++++|.+.|+.+.+.  .|+...+..+...+.+.|+.++|..++++-...
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            556677889999999999999999999999986  478888889999999999999999999977543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.77  E-value=6.1e-18  Score=135.58  Aligned_cols=262  Identities=15%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 018876           32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA  111 (349)
Q Consensus        32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (349)
                      .+...+.+.|++++|+++++........+.|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            4466666777777777777443322100234444555555566667777777777777665432 45555555555 566


Q ss_pred             CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018876          112 KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAV  190 (349)
Q Consensus       112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~  190 (349)
                      +++++|.+++....+.  .++...+...+..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777776665544  2444555666666677777777777776655432 234556666666666777777777777


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876          191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM  270 (349)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  270 (349)
                      +++..+..+. +......++..+...|+.+++..++....... +.++..+..+..++...|+.++|...++...+..+ 
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-  245 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-  245 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence            7776665432 45666666666666777666666666655443 34445556666666677777777777766665442 


Q ss_pred             chHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876          271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                      .|+.....+..++...|+.++|.++.++..
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             T-HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            356666666666777777777766665543

>TIGR00540 hemY_coli hemY protein

Probab=99.77  E-value=9.4e-15  Score=123.15  Aligned_cols=297  Identities=10%  Similarity=-0.025  Sum_probs=214.9

Q ss_pred             HHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHHHHH
Q 018876           31 TALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLI  105 (349)
Q Consensus        31 ~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~  105 (349)
                      ..+..+  ....|+++.|.+.+.+..+.   .|+. ..+-....+....|+++.|.+.+.+..+..  |+.  .......
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a  160 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence            334444  34679999999999888765   3543 444555677888999999999999987753  443  3444457


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcC
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY---GKAG  182 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~  182 (349)
                      ..+...|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+..+.......-..++   ...+
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~  239 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA  239 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999876 4566788899999999999999999999999987543332212111221   2223


Q ss_pred             CHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhh
Q 018876          183 HFEKMSAVMEYMQKYHY---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT---LCSLVRAYGHAGKPEK  256 (349)
Q Consensus       183 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~  256 (349)
                      ..+.....+..+.+..+   +.++..+..+...+...|+.++|.+++++..+..  |+...   ...........++.+.
T Consensus       240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence            33333344444444332   1378888899999999999999999999998764  33321   1111122234577888


Q ss_pred             HHHHHHHHhhCCCCchH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876          257 LGSVLRFIDNSDIMLDT--VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV  334 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  334 (349)
                      +.+.++...+..+ -|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++..
T Consensus       318 ~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       318 LEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888776543 244  6777899999999999999999996444445789988999999999999999999999865


Q ss_pred             HH
Q 018876          335 EK  336 (349)
Q Consensus       335 ~~  336 (349)
                      ..
T Consensus       397 l~  398 (409)
T TIGR00540       397 LG  398 (409)
T ss_pred             HH
Confidence            43

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=7.9e-18  Score=134.95  Aligned_cols=258  Identities=14%  Similarity=0.091  Sum_probs=115.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018876            1 MLGKCKQPEKAHELFQAMVDEG-CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF   79 (349)
Q Consensus         1 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   79 (349)
                      ++.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+  +-+...+..++.. ...+++
T Consensus        17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~   93 (280)
T PF13429_consen   17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDP   93 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccccc
Confidence            3567899999999997655443 24456666777777888999999999999998874  3456667777777 789999


Q ss_pred             hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018876           80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEK  158 (349)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  158 (349)
                      ++|.+++....+.  .++...+..++..+.+.++++++..+++++.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus        94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999887665  3567778888999999999999999999977542 356778888899999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876          159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC  238 (349)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  238 (349)
                      ..+.. +.|......++..+...|+.+++..++....+.. +.++..+..+..++...|+.++|...+++..... +.|+
T Consensus       172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~  248 (280)
T PF13429_consen  172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP  248 (280)
T ss_dssp             HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence            99874 3368888899999999999999999998887765 4467788899999999999999999999988754 5688


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      .....+..++...|+.++|.++...+..
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            8889999999999999999998877643

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=1.8e-14  Score=121.44  Aligned_cols=291  Identities=11%  Similarity=-0.021  Sum_probs=212.6

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChh
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFD   80 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~   80 (349)
                      ..|+++.|.+.+.+..+.  .|+. ..+-....+..+.|+++.|.+.+.+..+.   .|+.  .........+...|+++
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence            579999999999988776  3443 33445567788899999999999998765   3443  34444578888999999


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH---HccCCHHHHHHHHH
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF---GNSGQIDTMEKCYE  157 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~  157 (349)
                      .|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++   ...+..+++.+.+.
T Consensus       171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999985 3367788899999999999999999999999886443322211111111   22223333333444


Q ss_pred             HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          158 KFQSAGI---QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       158 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      .+.+...   +.+...+..+...+...|+.++|..++++..+..+......+ ..........++.+.+.+.++...+..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            4444321   237888999999999999999999999999887543222111 222222344577888888888877653


Q ss_pred             CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          234 IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       234 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                       +-|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             3344  567789999999999999999999654444567888888999999999999999999998644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=3.9e-14  Score=112.20  Aligned_cols=315  Identities=13%  Similarity=0.168  Sum_probs=223.6

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHcCCChh-HHHHHHHHhhcCC------------------CCCCC
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFD-KAFSLLEHMKNTP------------------DCQPD   62 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~a~~~~~~~~~~~------------------~~~~~   62 (349)
                      .+|.+..+.-+++.|.+.|++.+...-..|+..  |..+.+.- .-++.|-.|.+.+                  ..+.+
T Consensus       127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT  206 (625)
T KOG4422|consen  127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT  206 (625)
T ss_pred             hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence            467788888899999999888777776666554  22222221 1223333333221                  12456


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876           63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA  142 (349)
Q Consensus        63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  142 (349)
                      ..+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-..    ..+++.+|......||..|+|.++++
T Consensus       207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c  282 (625)
T KOG4422|consen  207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC  282 (625)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence            67888999999998888999999988888777888889998886644332    25678888888889999999999999


Q ss_pred             HHccCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCCC----chHHHHHH
Q 018876          143 FGNSGQIDT----MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK-MSAVMEYMQK----YHYSW----TIVTYNIV  209 (349)
Q Consensus       143 ~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l  209 (349)
                      ..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..    ..++|    |...|...
T Consensus       283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A  362 (625)
T KOG4422|consen  283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA  362 (625)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence            999997765    56778888899999999999999988888877644 4444444432    22222    44556667


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC----CCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSE----RIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      +..|.+..+.+-|..+..-+...    -+.|+   ..-|..+....|.....+.....++.+.-.-.-|+..+...++++
T Consensus       363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA  442 (625)
T KOG4422|consen  363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA  442 (625)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence            77777888888888877665432    12333   233556667777778888888888888877667888888888888


Q ss_pred             HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876          283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG  322 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  322 (349)
                      ..-.|.++-..++|.+++..|..-+...-.-++..+++.+
T Consensus       443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k  482 (625)
T KOG4422|consen  443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK  482 (625)
T ss_pred             HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence            8889999999999998888875555555555555555544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.75  E-value=6e-14  Score=107.06  Aligned_cols=292  Identities=15%  Similarity=0.090  Sum_probs=223.6

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch------HHHHHHHHHHhccC
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT------VTYNTLIDAYGRAK  112 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~  112 (349)
                      -+++.++|.++|-+|.+.+  +.+..+--+|.+.+-+.|..++|+.+...+.++   ||.      ...-.|..-|...|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence            4577899999999998753  456667778889999999999999999998876   332      23344666788889


Q ss_pred             chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 018876          113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMS  188 (349)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~  188 (349)
                      -++.|+++|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+.    ...|.-+...+....+++.|.
T Consensus       122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~  200 (389)
T COG2956         122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR  200 (389)
T ss_pred             hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence            9999999999998865 34455678899999999999999999999888765543    345677777777888999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      .++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-..+...+..+|...|++++...++..+.+..
T Consensus       201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            999999887644 5666666778889999999999999999888766667788889999999999999999999888764


Q ss_pred             CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018876          269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC  341 (349)
Q Consensus       269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  341 (349)
                      ..+  ..-..+-..-....-.+.|...+.+-...  +|+...+..++..-...+....+.+-+..+++|-...
T Consensus       280 ~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         280 TGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             CCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence            433  33334444444444556666666555554  6899999999998766665555666666666665443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.73  E-value=2.3e-13  Score=106.89  Aligned_cols=294  Identities=14%  Similarity=0.111  Sum_probs=199.7

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHH
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME  118 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  118 (349)
                      ..|++.+|.++..+-.+.+  ......|..-..+.-..|+.+.+-.++.+..+..-.++....-...+.....|+...|.
T Consensus        96 ~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            3577777777777766553  23344555666667777777777777777776533455556666667777777777777


Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 018876          119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMSAVM  191 (349)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~  191 (349)
                      .-++++.+.+ +..........++|.+.|++.....++..+.+.|.-.+.       .+|..+++-....+..+.-...+
T Consensus       174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            7777777665 445566677777777888888888887777777654432       35666666666555555555556


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018876          192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML  271 (349)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  271 (349)
                      +..... ..-++..-..++.-+.+.|+.++|.++..+..+.+..|+   ... .-.+.+.++.+.-.+..+.-.+... -
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~-~  326 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHP-E  326 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCC-C
Confidence            555433 233566667777778888888888888888777665554   222 2235566777766666665544322 2


Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhc
Q 018876          272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA  343 (349)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  343 (349)
                      ++..+..|...|.+.+.|.+|...|+...+.  .|+..+|..+..++.+.|++.+|.+..+....+..++..
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            5577778888888888888888888866655  678888888888888888888888887777655544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.72  E-value=2.1e-13  Score=117.36  Aligned_cols=325  Identities=15%  Similarity=0.122  Sum_probs=249.7

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA   84 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   84 (349)
                      +|++++|.+++.++++.. +.+...|..|...|-+.|+.+++...+-......  +.|...|..+.....+.|+++.|.-
T Consensus       152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHH
Confidence            499999999999999874 6788899999999999999999999887766543  6678899999999999999999999


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhH----HHHHHHHHccCCHHHHHHHHHHHH
Q 018876           85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTM----NCTLRAFGNSGQIDTMEKCYEKFQ  160 (349)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~  160 (349)
                      .|.+.++.. +++...+---+..|-+.|+...|...|.++.+...+.|..-+    -..++.+...++.+.|.+.++...
T Consensus       229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999884 456666666777899999999999999999987543333222    334556777777788999888876


Q ss_pred             hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCchHHHHHHHHH
Q 018876          161 SA-GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------------------------SWTIVTYNIVIDA  212 (349)
Q Consensus       161 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~  212 (349)
                      .. +-..+...++.++..+.+...++.+......+.....                           .++.... -++-+
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic  386 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC  386 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence            63 2234566778888889999999999888877765211                           1222221 22233


Q ss_pred             HHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876          213 FGRAGDLKQMEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA  290 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  290 (349)
                      +......+....+........  +.-+...|.-+..++...|++.+|+.++..+......-+...|-.+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            344444555555555555555  344567888999999999999999999999988766567889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       291 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                      +|.+.|+....... -+...-..|...+.+.|+.++|.+.++.+.
T Consensus       467 ~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  467 EAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            99999999987631 244555667777899999999998887643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.72  E-value=4.3e-13  Score=105.39  Aligned_cols=293  Identities=12%  Similarity=0.038  Sum_probs=235.8

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      -.|+|.+|+++..+-.+.+- .....|..-..+.-+.|+.+.+-.++.+..+..+ .++...+-+........|+.+.|.
T Consensus        96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHH
Confidence            36999999999999888763 3344566666778889999999999999988744 567777888889999999999999


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHHHH
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEKCY  156 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~  156 (349)
                      .-++++.+.+ +-++........+|.+.|++..+..++.++.+.+.-.+.       .+|..++.-....+..+.-...|
T Consensus       174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            9999999886 447788899999999999999999999999999866553       45677777777777777766777


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018876          157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP  236 (349)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (349)
                      +..... ...++..-..++.-+.++|+.++|.++..+..+.+..|.   ... .-.+.+-++...-++..+.-... .+.
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~  326 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPE  326 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence            776554 355677778888899999999999999999998887665   222 22345677777777777665543 244


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876          237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD  307 (349)
Q Consensus       237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  307 (349)
                      ++..+.++...|.+.+.+.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            5588999999999999999999999987775  57999999999999999999999999988775433443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.3e-13  Score=103.92  Aligned_cols=291  Identities=13%  Similarity=0.114  Sum_probs=223.8

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCChhHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD--VNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ..+.++|.++|-+|.+.. +.+..+.-.|...|.+.|..++|+.+.+.+.+.++..-+  ..+...|..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            567899999999999853 456677788999999999999999999999987543222  23345567788899999999


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHHHH
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCYEK  158 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  158 (349)
                      +.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+.    ...|..+...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999865 33566788899999999999999999998887654433    23355566666778899999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876          159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC  238 (349)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  238 (349)
                      ..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.++.--..+...|..+|...|+.++....+..+.+....+  
T Consensus       206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--  282 (389)
T COG2956         206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--  282 (389)
T ss_pred             HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence            8887532 4444456678889999999999999999998876667888999999999999999999999988764333  


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc---cCChHHHHHHHHHHHhc
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~  302 (349)
                      ..-..+.+......-.+.|...+.+-...  +|+...+..++..-..   .|...+-+.+++.|...
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            33444444444455566676666555443  4899999999988654   34566677777877655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.7e-14  Score=120.06  Aligned_cols=289  Identities=12%  Similarity=0.088  Sum_probs=206.7

Q ss_pred             ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccCchHHHHH
Q 018876           42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMFAEMEL  119 (349)
Q Consensus        42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~  119 (349)
                      +..+|+..|..+....  .-+..+...+..+|...+++++|+++|+.+.+...  .-+..+|...+--+-+.    -++.
T Consensus       334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS  407 (638)
T ss_pred             HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence            4568888888866542  22335556677888888888888888888877521  12556666666443221    1122


Q ss_pred             -HHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          120 -TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       120 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                       +-+.+.... +-.+.+|..+..+|..+++.+.|++.|++..+.. +-...+|+.+..-+....++|.|...|+......
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence             223333322 5567788888888888888888888888888763 2267778777777888888888888888877654


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876          199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC  278 (349)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  278 (349)
                      .. +...|--+...|.+.++++.|+-.|+.+.+.+ +-+......+...+-+.|+.++|+++++++...+.+ |+..--.
T Consensus       486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~  562 (638)
T KOG1126|consen  486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH  562 (638)
T ss_pred             ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence            32 44555556777888888888888888887765 445666777778888888888899988888877654 5555555


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhc
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA  343 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  343 (349)
                      .+..+...+++++|+..++++++.  .| +...+..+...|.+.|+.+.|..-+-.+.++++.+..
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            677788888888898888888876  44 4566777778888888888888888888887776543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1.6e-14  Score=120.23  Aligned_cols=292  Identities=12%  Similarity=0.017  Sum_probs=228.6

Q ss_pred             ChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 018876            7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQAL   85 (349)
Q Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~   85 (349)
                      +..+|...|..+.++ +.-...+...+..+|...+++++|.++|+.+++..+. ..+...|.+.+.-+-+.-...   -+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YL  409 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HH
Confidence            457899999996665 3445567778899999999999999999999886432 246788888876554432211   12


Q ss_pred             HHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876           86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ  165 (349)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  165 (349)
                      -+.+.+.. +-.+.+|..+.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+..+... +
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence            23333332 4477899999999999999999999999999764 3478889988888999999999999999887542 1


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      -+-..|.-+.-.|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+++++++.... +.|+..--.-+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence            23445555677899999999999999999988755 77778888889999999999999999998765 33444444556


Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK  308 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  308 (349)
                      ..+...+++++|...++++++.-+ -+...|..+...|.+.|+.+.|+.-|--+.+...++..
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            677889999999999999998643 36677888999999999999999999988887554433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.2e-12  Score=104.83  Aligned_cols=255  Identities=10%  Similarity=0.022  Sum_probs=178.0

Q ss_pred             cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCC--cchhhH-----------------
Q 018876           76 AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--PDVWTM-----------------  136 (349)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-----------------  136 (349)
                      ....+++.+-...+...|++-+...-+....+.....++++|+.+|+++.+...-  -|..+|                 
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA  319 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence            3444555555555566666555544455555556667777777777777665310  123333                 


Q ss_pred             --------------HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 018876          137 --------------NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT  202 (349)
Q Consensus       137 --------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  202 (349)
                                    ..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|..-++...+.++. |
T Consensus       320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D  397 (559)
T KOG1155|consen  320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D  397 (559)
T ss_pred             HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence                          333444566677888888888888875 336677888888888888888888888888887644 8


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      ...|-.+.++|.-.+...-|+-.|++...-. +-|...|.+|.++|.+.++.++|++.|......+- .+...+..|.+.
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakL  475 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKL  475 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence            8888888888888888888888888887654 56778888889999999999999998888887663 366788888888


Q ss_pred             HHccCChHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876          283 YGRLKCFAEMKGVLEVMQQR----GCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLV  334 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  334 (349)
                      |-+.++..+|...|+...+.    |...+  .....-|..-+.+.+++++|..+....
T Consensus       476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            88888888888888776652    32212  122222444566777777776654443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.5e-12  Score=103.02  Aligned_cols=307  Identities=11%  Similarity=0.037  Sum_probs=231.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 018876            7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ-PDVNTYSILIKSCLKAFAFDKVQAL   85 (349)
Q Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~   85 (349)
                      +.+++.+=.+.+.+.|++.+...-+....+.-...+++.|+.+|+++.+..+.. .|..+|+.++-.  +..+-.-  ..
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skL--s~  317 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKL--SY  317 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHH--HH
Confidence            556777777788888887777777777777788899999999999999875332 356778877744  3322221  11


Q ss_pred             HHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876           86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ  165 (349)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  165 (349)
                      +.+-...=-+--+.|...+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+-++..++.. +
T Consensus       318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p  395 (559)
T KOG1155|consen  318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P  395 (559)
T ss_pred             HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence            1111111012244577788888988999999999999999876 5567789999999999999999999999999875 5


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      .|-..|-.+.++|.-.+.+.-|+-.|++.....+ .|...|.+|..+|.+.++.++|+..|......| ..+...+..+.
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~La  473 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLA  473 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHH
Confidence            5889999999999999999999999999988764 489999999999999999999999999998776 34668899999


Q ss_pred             HHHHhcCChhhHHHHHHHHhhC----CC-Cc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNS----DI-ML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS  319 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  319 (349)
                      ..+-+.++.++|...+....+.    |. .| .....-.|...+.+.+++++|..........                 
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-----------------  536 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-----------------  536 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----------------
Confidence            9999999999999988776542    22 22 2223333666677888888887655444332                 


Q ss_pred             ccCchhhhHHHHHHHHHhHH
Q 018876          320 TNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~  339 (349)
                       ....++|..+++.+++...
T Consensus       537 -~~e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  537 -ETECEEAKALLREIRKIQA  555 (559)
T ss_pred             -CchHHHHHHHHHHHHHhcC
Confidence             2234566666666666544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=3.9e-12  Score=109.70  Aligned_cols=303  Identities=12%  Similarity=0.107  Sum_probs=234.1

Q ss_pred             HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876           35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF  114 (349)
Q Consensus        35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (349)
                      ..+...|++++|.+++.++.+..  +.+...|.+|...|-..|+.+++...+-...... +-|...|..+.......|.+
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence            33444599999999999999874  6788999999999999999999998876665553 44678899999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHHHHHHH
Q 018876          115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF----NILLDSYGKAGHFEKMSAV  190 (349)
Q Consensus       115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~  190 (349)
                      ..|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+    ..++..+...++.+.|.+.
T Consensus       224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999875 556555566678889999999999999999987543333333    3345667777888999999


Q ss_pred             HHHHHhc-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCcHHHHH
Q 018876          191 MEYMQKY-HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---------------------------IKPSCVTLC  242 (349)
Q Consensus       191 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~  242 (349)
                      ++..... +-..+...++.++..+.+...++.+......+....                           ..++..+ .
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~  381 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I  381 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence            8877652 223466778889999999999999998887776511                           1222222 1


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCC--CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST  320 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  320 (349)
                      .++-++.+....+....+...+...+  +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence            23344555555565556666665555  3445678899999999999999999999999988554567899999999999


Q ss_pred             cCchhhhHHHHHHHHHhHHhhh
Q 018876          321 NGMKNHAKEFQDLVEKMDETCL  342 (349)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~~  342 (349)
                      .|..++|.++++++....+...
T Consensus       462 l~e~e~A~e~y~kvl~~~p~~~  483 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLILAPDNL  483 (895)
T ss_pred             HhhHHHHHHHHHHHHhcCCCch
Confidence            9999999999999988766544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=4e-12  Score=101.91  Aligned_cols=313  Identities=14%  Similarity=0.092  Sum_probs=159.0

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----------CCCHHHHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----------QPDVNTYSILI   70 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~   70 (349)
                      |.+.|+++.|+..|+...+.  .|+..+-..|+-++.--|+-++..+.|.+|...++.           .|+....+-.+
T Consensus       286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence            45788888999999888776  477666555566666778888888888888765431           22322222221


Q ss_pred             -----HHHHhcCC--hhHHHHHHHHHHhCCCCCchH-----H--------HH--------HHHHHHhccCchHHHHHHHH
Q 018876           71 -----KSCLKAFA--FDKVQALLSDMSTQGIRPNTV-----T--------YN--------TLIDAYGRAKMFAEMELTLV  122 (349)
Q Consensus        71 -----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-----~--------~~--------~l~~~~~~~~~~~~a~~~~~  122 (349)
                           .-.-+.+.  .++++-.--+++.--+.|+-.     +        +.        .-.--+.+.|+++.|.+++.
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk  443 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK  443 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence                 11111111  111111111111111122110     0        00        01123566777777777776


Q ss_pred             HHhccCCCcc---------------------hhh----------HHHHH-----HHHHccCCHHHHHHHHHHHHhcCCCC
Q 018876          123 KMLSEDCEPD---------------------VWT----------MNCTL-----RAFGNSGQIDTMEKCYEKFQSAGIQP  166 (349)
Q Consensus       123 ~~~~~~~~~~---------------------~~~----------~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (349)
                      -..+..-+.-                     ...          ||.-.     ......|++++|.+.|.+.......-
T Consensus       444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc  523 (840)
T KOG2003|consen  444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC  523 (840)
T ss_pred             HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence            5543321110                     011          11100     11224567777888777777654332


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      ....|+.-+ .+-..|+.++|+..|-++...- ..+......+...|....+..+|++++.+.... ++.|+.+++.+..
T Consensus       524 ~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d  600 (840)
T KOG2003|consen  524 TEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD  600 (840)
T ss_pred             HHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence            333333222 3456677777777766554321 124555555555565566666666665554322 3344555555555


Q ss_pred             HHHhcCChhhH----------------------------------HHHHHHHhhCCCCchHHHHHHHHHHHH-ccCChHH
Q 018876          247 AYGHAGKPEKL----------------------------------GSVLRFIDNSDIMLDTVFFNCLVDAYG-RLKCFAE  291 (349)
Q Consensus       247 ~~~~~~~~~~a----------------------------------~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~  291 (349)
                      .|-+.|+-..|                                  +..|++..-  +.|+..-|..++..|. +.|+++.
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk  678 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK  678 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence            55555554444                                  444443322  3456666666554443 4566666


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876          292 MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG  322 (349)
Q Consensus       292 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  322 (349)
                      |.+++++..+. ++-|......|++.+...|
T Consensus       679 a~d~yk~~hrk-fpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  679 AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence            66666666554 3445566666666665555

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.61  E-value=3.9e-12  Score=110.61  Aligned_cols=330  Identities=13%  Similarity=0.054  Sum_probs=180.1

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----C
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----A   78 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~   78 (349)
                      ...|++++|...|....+..-...+..+.-|.+.+...|+++.+...|+.+....  +-+..+...+...|...+    .
T Consensus       318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~  395 (1018)
T KOG2002|consen  318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEK  395 (1018)
T ss_pred             HhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHH
Confidence            4567777777777666654311113344556666777777777777777766552  334445555555555443    3


Q ss_pred             hhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh----ccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018876           79 FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML----SEDCEPDVWTMNCTLRAFGNSGQIDTMEK  154 (349)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  154 (349)
                      .+.|..++.+..+.- +.|...|-.+...+....-+.. +..|....    ..+..+.+...|.+...+...|++.+|..
T Consensus       396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~  473 (1018)
T KOG2002|consen  396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE  473 (1018)
T ss_pred             HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence            344555554444432 3355555555555544433322 44443332    23334556667777777777777777777


Q ss_pred             HHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------
Q 018876          155 CYEKFQSA---GIQPSI------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-------------------------  200 (349)
Q Consensus       155 ~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------  200 (349)
                      .|......   ...++.      .+-..+...+-..++.+.|..+|..+.+..+.                         
T Consensus       474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l  553 (1018)
T KOG2002|consen  474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL  553 (1018)
T ss_pred             HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence            77766543   111122      12223344444455666666666655544311                         


Q ss_pred             --------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHh------------cCChhhHHH
Q 018876          201 --------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGH------------AGKPEKLGS  259 (349)
Q Consensus       201 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~  259 (349)
                              .++..++.+...+.....+..|.+-|....+. ...+|..+...|...|..            .+..++|++
T Consensus       554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq  633 (1018)
T KOG2002|consen  554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ  633 (1018)
T ss_pred             HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence                    12333333333333333333333322222211 112344444444443321            233566777


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      +|..+....+ .|...-|-+.-.++..|++.+|..+|.+..+... -...+|..+..+|...|++..|++.|+...+..
T Consensus       634 ~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  634 LYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             HHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777654 3666777777778888888888888888777643 245677777888888888888888777665543

>PRK12370 invasion protein regulator; Provisional

Probab=99.59  E-value=3.6e-12  Score=111.63  Aligned_cols=249  Identities=10%  Similarity=-0.022  Sum_probs=147.2

Q ss_pred             hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876           44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCL---------KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF  114 (349)
Q Consensus        44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (349)
                      ++|...|++..+..  +.+...|..+..++.         ..+++++|...+++..+.. +-+...+..+...+...|++
T Consensus       278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence            56777777777653  234445555544433         2234677777777777764 23556666676777777888


Q ss_pred             HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876          115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM  194 (349)
Q Consensus       115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (349)
                      ++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...++++
T Consensus       355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            88888888777664 444556666777777788888888888887776422 2223333444455677778888887777


Q ss_pred             HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCchH
Q 018876          195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IMLDT  273 (349)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~  273 (349)
                      .....+-++..+..+..++...|+.++|...+.++.... +.+....+.+...+...|  +.|...++.+.+.. ..+..
T Consensus       433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~  509 (553)
T PRK12370        433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN  509 (553)
T ss_pred             HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence            654322244556666677777888888888877765432 222333444445556555  35666555554321 11111


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      ..+  +-..|.-.|+.+.+..+ +++.+.|
T Consensus       510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        510 PGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            111  33344555665555544 6666553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=2.2e-11  Score=98.33  Aligned_cols=328  Identities=10%  Similarity=0.041  Sum_probs=203.0

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCh
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAF   79 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~   79 (349)
                      |-+.|++++|++.+.+.++.  .|+ +..|.....+|...|+++++.+.-....+.   .|+ +..+..-.+++-..|++
T Consensus       125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~lg~~  199 (606)
T KOG0547|consen  125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQLGKF  199 (606)
T ss_pred             hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHhhccH
Confidence            45789999999999999987  577 788999999999999999998888777765   343 34455555555556665


Q ss_pred             hHHHH----------------------HHHH---------HHhCC--CCCchHHHHHHHHHHh-----------------
Q 018876           80 DKVQA----------------------LLSD---------MSTQG--IRPNTVTYNTLIDAYG-----------------  109 (349)
Q Consensus        80 ~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~l~~~~~-----------------  109 (349)
                      ++|..                      ++..         +.+.+  +-|+.....+....+.                 
T Consensus       200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~  279 (606)
T KOG0547|consen  200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA  279 (606)
T ss_pred             HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence            54431                      1111         11011  2233322222222221                 


Q ss_pred             ----------------------------------------------------------ccCchHHHHHHHHHHhccCCCc
Q 018876          110 ----------------------------------------------------------RAKMFAEMELTLVKMLSEDCEP  131 (349)
Q Consensus       110 ----------------------------------------------------------~~~~~~~a~~~~~~~~~~~~~~  131 (349)
                                                                                -.|+.-.|..-|+..+..... 
T Consensus       280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-  358 (606)
T KOG0547|consen  280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-  358 (606)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-
Confidence                                                                      112222222333333322211 


Q ss_pred             chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018876          132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID  211 (349)
Q Consensus       132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  211 (349)
                      +...|-.+..+|....+.++..+.|+...+.+ +-++.+|..-.....-.+++++|..=|++.....+. +...|-.+..
T Consensus       359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~  436 (606)
T KOG0547|consen  359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCC  436 (606)
T ss_pred             cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH
Confidence            11225555556666666677777777666654 225555655556666666777777777777666533 5556666666


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-------chHHHHHHHHHHHH
Q 018876          212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-------LDTVFFNCLVDAYG  284 (349)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~  284 (349)
                      +..+.+.++++...|++.+.. .+..+..|+...+.+...++++.|.+.|+..++....       +.+.+.-.++..-.
T Consensus       437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw  515 (606)
T KOG0547|consen  437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW  515 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence            666777888888888887654 3455677787888888888888888888877664322       11222222222222


Q ss_pred             ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                       .+++..|..++....+.+.+ ....|..|...-.+.|+.++|+++|+.-..+.++
T Consensus       516 -k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  516 -KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             -hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence             37788888888888776433 4566788888888899999999988877665544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.59  E-value=2.9e-11  Score=102.83  Aligned_cols=289  Identities=15%  Similarity=0.136  Sum_probs=206.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHh-----
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY-SILIKSCLK-----   75 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-----   75 (349)
                      +...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.   .|+...| ..+..+..-     
T Consensus        14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence            45689999999999886654 4445666777888899999999999999999987   4555555 444444422     


Q ss_pred             cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH-HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018876           76 AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA-EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK  154 (349)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  154 (349)
                      ..+.+....+++++...  -|.......+.-.+.....|. .+...+..+...|+++   +|+.+-..|.......-..+
T Consensus        90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence            23567788888888766  244444444433333333443 3455666777777544   56667666776666666666


Q ss_pred             HHHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876          155 CYEKFQSA----G----------IQPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       155 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (349)
                      ++......    +          -+|+.  .++..+...|...|++++|...+++..+..+. .+..|..-...+-..|+
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence            66665432    1          13444  34466677888999999999999999988643 47888888999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH------HH--HHHHHHHHccCChH
Q 018876          219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV------FF--NCLVDAYGRLKCFA  290 (349)
Q Consensus       219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~  290 (349)
                      +.+|.+.++..+... .-|...-+..+..+.+.|+.++|.+++......+..|...      +|  .....+|.+.|++.
T Consensus       244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999998776 4567777778888999999999999999987766433221      22  45677889999999


Q ss_pred             HHHHHHHHHHh
Q 018876          291 EMKGVLEVMQQ  301 (349)
Q Consensus       291 ~a~~~~~~~~~  301 (349)
                      .|++-|....+
T Consensus       323 ~ALk~~~~v~k  333 (517)
T PF12569_consen  323 LALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHH
Confidence            98877766543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.1e-10  Score=94.24  Aligned_cols=324  Identities=10%  Similarity=0.065  Sum_probs=235.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA   84 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   84 (349)
                      .|++..|.++|++..+-  .|+..+|++.+..=.+-+.++.|..+++...-.   .|++..|-.....-.+.|+...+.+
T Consensus       154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~  228 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARS  228 (677)
T ss_pred             hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHH
Confidence            58889999999998875  799999999999999999999999999998865   7999999888888888899888888


Q ss_pred             HHHHHHhC-CC-CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc-----------------------------------
Q 018876           85 LLSDMSTQ-GI-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-----------------------------------  127 (349)
Q Consensus        85 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------------  127 (349)
                      +|+...+. |- ..+...+.+....=.++..++.|.-+|+-.++.                                   
T Consensus       229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk  308 (677)
T KOG1915|consen  229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK  308 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence            88887664 21 011222222222222333333333333222111                                   


Q ss_pred             --------CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHH----H----HHHhcCCHHHHHH
Q 018876          128 --------DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN--TFNILL----D----SYGKAGHFEKMSA  189 (349)
Q Consensus       128 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~----~----~~~~~~~~~~a~~  189 (349)
                              .-+-|-.+|-..++.-...|+.+...++|++.+.+ ++|-..  .|.-.|    +    .-....+++.+.+
T Consensus       309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                    11445667777777778889999999999998876 444211  122211    1    1135678888999


Q ss_pred             HHHHHHhcCCCCchHHHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          190 VMEYMQKYHYSWTIVTYNI----VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                      +++...+. ++....|+.-    ......++.++..|.+++...+  |..|-..+|...|..=.+.++++.+..+++...
T Consensus       388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99888773 3334444443    3444457889999999998765  567888999999999999999999999999999


Q ss_pred             hCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       266 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      +.++ .+..+|......-...|+.+.|..+|+-.++... .-....|.+.|.--...|.++.|..+++.+.+..
T Consensus       465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            9875 4888999888888899999999999999988632 2234567777777788999999999998876643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.58  E-value=6.5e-11  Score=99.09  Aligned_cols=327  Identities=10%  Similarity=0.008  Sum_probs=193.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      .+.+.++-|..+|....+- ++-+...|......--..|..++...+|++....-  +.....|-......-..|++..|
T Consensus       527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~a  603 (913)
T KOG0495|consen  527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAA  603 (913)
T ss_pred             HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHH
Confidence            3455566666666666654 23445556555555555566666666666665541  33344444455555556666666


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      ..++....+.. +-+...|-..+..-..+.+++.|..+|.+....  .|+...|.--+..---.+..++|.+++++..+.
T Consensus       604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~  680 (913)
T KOG0495|consen  604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS  680 (913)
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence            66666665553 225555666666666666666666666666543  444555544444444555666666666655554


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 018876          163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC  242 (349)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  242 (349)
                       ++.-...|-.+...+-+.++.+.|...|..-.+.- +-.+..|-.+...--+.|.+-.|..+++...-.+ +.+...|.
T Consensus       681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl  757 (913)
T KOG0495|consen  681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL  757 (913)
T ss_pred             -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence             22223344455555555555555555555443332 2234445555555555555555555555554443 34445555


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhC-----------------------------CCCchHHHHHHHHHHHHccCChHHHH
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNS-----------------------------DIMLDTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~~~~g~~~~a~  293 (349)
                      ..|+.-.+.|+.+.|..+..++...                             .+.-|+++.-.+...|....+++.|.
T Consensus       758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar  837 (913)
T KOG0495|consen  758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAR  837 (913)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555444333211                             12236677778888888899999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +.|.+..+.+.. +..+|.-+..-+.++|.-++-.+++..+..-.+
T Consensus       838 ~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  838 EWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             HHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            999999987533 578899999999999998888888887766443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.57  E-value=8.1e-12  Score=97.71  Aligned_cols=201  Identities=13%  Similarity=0.055  Sum_probs=131.4

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018876          133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA  212 (349)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  212 (349)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            4445556666666777777777776666543 234556666666677777777777777766665432 45556666666


Q ss_pred             HHhcCChHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERI-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE  291 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  291 (349)
                      +...|++++|...++....... +.....+..+...+...|++++|...+........ .+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence            7777777777777777665321 12234555666777777778888777777766543 245566677777778888888


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          292 MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       292 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      |...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            88888777765 2335566666667777778888777776665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.56  E-value=1.8e-11  Score=107.30  Aligned_cols=267  Identities=10%  Similarity=0.038  Sum_probs=188.9

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh---------ccCchHHHHHHHHHHh
Q 018876           60 QPDVNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG---------RAKMFAEMELTLVKML  125 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~  125 (349)
                      ..+...|...+.+...     .++.++|...|++..+.. +-+...|..+..++.         ..+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            3555656555555322     234679999999998873 224455655555443         2345899999999999


Q ss_pred             ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 018876          126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT  205 (349)
Q Consensus       126 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  205 (349)
                      +.. +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.++. +...
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            875 5567778888888999999999999999999885 446778888999999999999999999999887644 3333


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876          206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR  285 (349)
Q Consensus       206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  285 (349)
                      +..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+..+..... .+....+.+...|+.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~  487 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence            3444555667899999999999987654223455577788888999999999999998766532 245556667777888


Q ss_pred             cCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876          286 LKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK  336 (349)
Q Consensus       286 ~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  336 (349)
                      .|  +.|...++.+.+. ...|....+..  ..+.-.|+.+.+... +.+.+
T Consensus       488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        488 NS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             cH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhc
Confidence            88  4777777776654 22233333333  344556666666665 55444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.55  E-value=8.5e-13  Score=113.49  Aligned_cols=241  Identities=15%  Similarity=0.125  Sum_probs=141.4

Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      .++-.+...|+.|+..+|.+++.-|+..|+++.|- +|.-|+-. ..+.+...++.++.+....++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence            45667888899999999999999999999999998 88888766 33677888999999988888887776         


Q ss_pred             CCCCchHHHHHHHHHHhccCchHH---HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCCCH
Q 018876           93 GIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS-AGIQPSI  168 (349)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  168 (349)
                        .|...+|..|..+|...|+...   +.+.+....               ..+...|.......++..+.- .+..||.
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~---------------~sfs~~Gvgs~e~~fl~k~~c~p~~lpda  142 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESIN---------------QSFSDHGVGSPERWFLMKIHCCPHSLPDA  142 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHH---------------hhhhhhccCcHHHHHHhhcccCcccchhH
Confidence              6788999999999999998654   222222221               122222222222222222110 0111111


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH------------------------------HHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVM------------------------------EYMQKYHYSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (349)
                      .+   .+......|-++.+.+++                              .......-.|++.+|.+++..-...|+
T Consensus       143 ~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~  219 (1088)
T KOG4318|consen  143 EN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD  219 (1088)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence            11   111112222222222222                              222221113556666666666666666


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      .+.|..++.+|.+.|.+.+..-|..++-+   .++..-+..+++.|.+.|+.|+..|+...+..+..+|
T Consensus       220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            66666666666666665555555555433   4555555555666666666666666655555555533

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.55  E-value=1.4e-11  Score=96.40  Aligned_cols=200  Identities=11%  Similarity=0.049  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876           63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA  142 (349)
Q Consensus        63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  142 (349)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            4455555666666666666666666665542 2234555556666666666666666666665543 2334455555666


Q ss_pred             HHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                      +...|++++|.+.+.+..+... +.....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            6666666666666666655321 123344555566666667777777777666655422 44556666666667777777


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      |...+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            77777666554 233445555566666666777777666665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.55  E-value=1.2e-10  Score=99.01  Aligned_cols=295  Identities=13%  Similarity=0.095  Sum_probs=209.9

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHH-HHHHHHHHhc-
Q 018876           33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-YNTLIDAYGR-  110 (349)
Q Consensus        33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-  110 (349)
                      ....+...|++++|++.++.-...  +.............+.+.|+.++|..+|..+++.+  |+... |..+..+..- 
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence            445678899999999999886654  23445566788899999999999999999999985  45444 4555555422 


Q ss_pred             ----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876          111 ----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID-TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE  185 (349)
Q Consensus       111 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (349)
                          ..+.+....+++++...-  |.......+.-.+.....+. .+..++..+...|++   .+|+.+-..|....+.+
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence                235677888888887653  44433333333333323333 355667777888865   34666666666555555


Q ss_pred             HHHHHHHHHHhc----C----------CCCch--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018876          186 KMSAVMEYMQKY----H----------YSWTI--VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG  249 (349)
Q Consensus       186 ~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  249 (349)
                      ....++......    +          -+|+.  .++..+...|-..|++++|+++++..++.. +-.+..|..-.+.+-
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK  239 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence            555666554322    1          12333  344666888889999999999999998864 333677888889999


Q ss_pred             hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH------HH--HHHHHHHHcc
Q 018876          250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV------TY--RTMVRAYSTN  321 (349)
Q Consensus       250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~  321 (349)
                      +.|++.+|...++.....+.. |-..-+..+..+.+.|++++|.+++....+.+..|-..      .|  .....+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988753 77777788899999999999999999888776543322      22  3445689999


Q ss_pred             CchhhhHHHHHHHHHhH
Q 018876          322 GMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       322 g~~~~a~~~~~~~~~~~  338 (349)
                      |++..|.+.+..+.+.-
T Consensus       319 ~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  319 GDYGLALKRFHAVLKHF  335 (517)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999998877776643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.55  E-value=8.3e-12  Score=104.86  Aligned_cols=252  Identities=18%  Similarity=0.160  Sum_probs=187.4

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhcc-----C-CCcchh-hHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-CEPDVW-TMNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI  164 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~  164 (349)
                      -..+...+...|...|+++.|..+++...+.     | ..|... ..+.+...|...+++++|..+|+++...     |.
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3456677889999999999999999888765     2 133333 3344777899999999999999998653     21


Q ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 018876          165 --QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-----H-YSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---  232 (349)
Q Consensus       165 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  232 (349)
                        +.-..+++.|..+|.+.|++++|...++...+.     + ..|. ...++.+...++..+++++|..+++...+.   
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence              123456777788899999999998888765431     1 1122 234566777888999999999999876532   


Q ss_pred             CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----C---CCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          233 RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----D---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      -+.    -...+++.+...|...|++++|.++++.+...    +   ..-....++.+...|.+.+++.+|.++|.+...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            111    22467899999999999999999999887542    1   112345678899999999999999999987654


Q ss_pred             c----CC-CCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCCC
Q 018876          302 R----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD  348 (349)
Q Consensus       302 ~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  348 (349)
                      .    |. .|+ ..+|..|...|...|+++.|.++.+.+....+...+...|+
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~  490 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT  490 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            3    22 223 46799999999999999999999999998877766665554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=1.2e-12  Score=100.43  Aligned_cols=237  Identities=14%  Similarity=-0.002  Sum_probs=199.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH
Q 018876           60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT  139 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  139 (349)
                      ..|..--+.+.++|.+.|.+.+|.+.++.-.+.  .|-+.||..|-+.|.+..+...|+.++.+-.+.- +-++....-+
T Consensus       220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~  296 (478)
T KOG1129|consen  220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ  296 (478)
T ss_pred             hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence            345555577889999999999999999988876  5677899999999999999999999999888652 4445445667


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876          140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL  219 (349)
Q Consensus       140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  219 (349)
                      .+.+...++.++|.++|+...+.. +.+......+...|.-.++++.|...++++.+.|.. ++..|+.+.-+|.-.+++
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence            788888999999999999988874 447777777888888999999999999999999977 889999998888899999


Q ss_pred             HHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018876          220 KQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE  297 (349)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  297 (349)
                      +-++..|.+....-..|+  ..+|..+.......|++..|.+.|+....++.. +...+|.|...-.+.|++++|..++.
T Consensus       375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN  453 (478)
T ss_pred             hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence            999999988876533333  467888888889999999999999998887653 77889999999999999999999999


Q ss_pred             HHHhc
Q 018876          298 VMQQR  302 (349)
Q Consensus       298 ~~~~~  302 (349)
                      .....
T Consensus       454 ~A~s~  458 (478)
T KOG1129|consen  454 AAKSV  458 (478)
T ss_pred             Hhhhh
Confidence            88765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=2.5e-12  Score=98.64  Aligned_cols=238  Identities=9%  Similarity=-0.037  Sum_probs=200.3

Q ss_pred             CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876           96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL  175 (349)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  175 (349)
                      .|-.--+.+.++|.+.|.+.+|.+.++.-..+  .|-+.||..+-++|.+..++..|+.++.+-.+. .+-+.....-..
T Consensus       221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A  297 (478)
T KOG1129|consen  221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA  297 (478)
T ss_pred             HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence            34444467889999999999999999998877  666778999999999999999999999998876 344555556677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  255 (349)
                      +.+-..++.++|.++++...+... .++.....+...|.-.++++-|..+++++.+.|+ .++..|+.+.-+|...++++
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence            888899999999999999988763 3778888888888899999999999999999995 57789999999999999999


Q ss_pred             hHHHHHHHHhhCCCCc--hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876          256 KLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL  333 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  333 (349)
                      -++.-|.+....--.|  -..+|..+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..++..
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence            9999998876543333  3457878888899999999999999998877533 678899998888999999999999988


Q ss_pred             HHHhHH
Q 018876          334 VEKMDE  339 (349)
Q Consensus       334 ~~~~~~  339 (349)
                      .....+
T Consensus       455 A~s~~P  460 (478)
T KOG1129|consen  455 AKSVMP  460 (478)
T ss_pred             hhhhCc
Confidence            776554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.51  E-value=5.1e-10  Score=97.81  Aligned_cols=240  Identities=12%  Similarity=0.035  Sum_probs=127.5

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL  174 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  174 (349)
                      ++...+.|.+.|.-.|++..+..+...+.....  ..-...|-.+.++|...|++++|...|.+..+.....-...+.-+
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl  348 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL  348 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence            455556666666666666666666666554421  112234556666666667777776666665554211112333445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      ...+.+.|+.+.+...|+.+.+..+. +..+...+...|...+    ..+.|..++....+.. +.|...|..+...+. 
T Consensus       349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-  425 (1018)
T KOG2002|consen  349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-  425 (1018)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-
Confidence            56666666666666666666655422 4555555555555543    3344555555444332 344555555555443 


Q ss_pred             cCChhhHHHHHHHHh----hCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc---CCCCCH------HHHHHHHHH
Q 018876          251 AGKPEKLGSVLRFID----NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR---GCKPDK------VTYRTMVRA  317 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~------~~~~~l~~~  317 (349)
                      .+++..++.++..+.    ..+..+.+...|.+...+...|.+.+|...|+.....   ...+|.      .+-..+...
T Consensus       426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl  505 (1018)
T KOG2002|consen  426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL  505 (1018)
T ss_pred             hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence            333333354444332    2333355666666777777777777777776666544   111222      222333444


Q ss_pred             HHccCchhhhHHHHHHHHHhHH
Q 018876          318 YSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +-..++++.|.+.+..+.+-.+
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilkehp  527 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILKEHP  527 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHCc
Confidence            4555566666666666655443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=8.6e-11  Score=94.44  Aligned_cols=278  Identities=12%  Similarity=0.044  Sum_probs=205.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHH-HH-cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSA-YG-RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF   79 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   79 (349)
                      |.+.|+++.|++++.-+.+.+-+.....-+.|-.. |. .-.++..|.+.-+......  .-+......-.......|++
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcH
Confidence            45778888888888877765433323333333222 22 2346777777777766554  34555444444455567899


Q ss_pred             hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876           80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF  159 (349)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  159 (349)
                      ++|...+.+.....-......||.= -.+-..|++++|+..|-++... +..+..+...+...|....+..+|++++.+.
T Consensus       507 dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            9999999998876333233333332 3456779999999999887643 2446677778889999999999999999887


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018876          160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV  239 (349)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  239 (349)
                      ... ++.|+...+-|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..-  +.|+..
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~  660 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS  660 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence            765 5668999999999999999999999887654443 455888999999999999999999999998643  589999


Q ss_pred             HHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018876          240 TLCSLVRAY-GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC  288 (349)
Q Consensus       240 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  288 (349)
                      -|..++..| .+.|++.+|..+++.+... ++.|..+...|++.+...|-
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            998887655 5689999999999998875 45688888888888877764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.8e-10  Score=94.85  Aligned_cols=288  Identities=10%  Similarity=-0.031  Sum_probs=227.7

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL  104 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  104 (349)
                      .++.....-.+-+...+++.+..++++.+.+..  +++...+..-|.++...|+..+...+=.+|.+. .|-.+.+|-.+
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            345555666677888899999999999998875  677777777788999999998888888888877 35577899999


Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF  184 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (349)
                      ..-|.-.|...+|.+.|.+..... +.=...|-.+...|+-.|..++|...+....+.= +-...-+-.+.--|.+.++.
T Consensus       319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence            988988999999999999887553 2224578888999999999999999988876641 11222223344457889999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCChhhHH
Q 018876          185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------RIKPSCVTLCSLVRAYGHAGKPEKLG  258 (349)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~  258 (349)
                      +.|.+.|.+.....+ .|+..++-+.-.....+.+.+|..+|+.....      .......+++.|..+|.+.+.+++|+
T Consensus       397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            999999999887753 37888888887777889999999999887621      11124567899999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876          259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN  321 (349)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  321 (349)
                      ..++....... -+..++.++.-.|...|+++.|.+.|.+....  .|+..+-..++..+...
T Consensus       476 ~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  476 DYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence            99999988764 48899999999999999999999999988754  78887777777655443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.50  E-value=8.2e-10  Score=92.72  Aligned_cols=326  Identities=9%  Similarity=0.021  Sum_probs=262.4

Q ss_pred             CCCChHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.|.+--+..+....+..|+..  -..+|..-.+.|.+.+.++-|..+|....+..  +-+...|......--..|..+.
T Consensus       491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Es  568 (913)
T KOG0495|consen  491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRES  568 (913)
T ss_pred             hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHH
Confidence            3466677777888877776543  35678888999999999999999999998864  5667788888877778899999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      ...+|++.... .+-....|......+-..|+...|..++.+..+.. +.+...|-..+..-..+.+++.|..+|.+...
T Consensus       569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~  646 (913)
T KOG0495|consen  569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS  646 (913)
T ss_pred             HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence            99999999887 45566778888888888999999999999999876 44788899999999999999999999999887


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL  241 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (349)
                      .  .|+...|.--+....-.+..++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-... ++-....|
T Consensus       647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW  722 (913)
T KOG0495|consen  647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW  722 (913)
T ss_pred             c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence            5  5788888877777788899999999999888764 335678888999999999999999988765433 34456677


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc----C--------------
Q 018876          242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----G--------------  303 (349)
Q Consensus       242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--------------  303 (349)
                      ..+...=-+.|.+-.|..+++...-.++. +...|-..|+.-.+.|+.+.|..+..+..+.    |              
T Consensus       723 llLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~  801 (913)
T KOG0495|consen  723 LLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ  801 (913)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence            77877778889999999999999888764 8889999999999999999998777665443    1              


Q ss_pred             -----------CCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          304 -----------CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       304 -----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                                 ..-|+.....+...+....+++.|.+.|.+.-+.+
T Consensus       802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                       23355555666666777777777777776655543

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=2.3e-13  Score=77.43  Aligned_cols=50  Identities=30%  Similarity=0.549  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876          271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST  320 (349)
Q Consensus       271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  320 (349)
                      ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68888889999999999999999999999888888999999988888864

>PF13041 PPR_2: PPR repeat family

Probab=99.46  E-value=3.4e-13  Score=76.72  Aligned_cols=50  Identities=40%  Similarity=0.685  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 018876           61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR  110 (349)
Q Consensus        61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  110 (349)
                      ||..+||+++.++++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56677777777777777777777777777777777777777777776654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=6.3e-09  Score=84.33  Aligned_cols=322  Identities=11%  Similarity=0.080  Sum_probs=186.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~   83 (349)
                      ++++..|..+|++.+... ..+...|..-+.+=.++..+..|..+++.....   -|-+ ..|---+..--..|++..|.
T Consensus        86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR  161 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR  161 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence            466778888888888754 456777777777777888888888888877764   2332 33444444445667788888


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-  162 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  162 (349)
                      ++|++-.+-  .|+...|++.++.=.+.+.++.|..+|++..--  .|++.+|--..+.-.+.|+..-+..+|+...+. 
T Consensus       162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            888877764  678888888888777778888888888777643  577777777777777777777777777666543 


Q ss_pred             CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------------------------c
Q 018876          163 GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQK--------------------------------------------Y  197 (349)
Q Consensus       163 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------------------------~  197 (349)
                      |- ..+...+.++...-.++..++.|.-+|+-...                                            .
T Consensus       238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~  317 (677)
T KOG1915|consen  238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK  317 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence            10 01122222222222233334444443333222                                            2


Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH--HHHHHH--------HHHHhcCChhhHHHHHHHHhhC
Q 018876          198 HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV--TLCSLV--------RAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      + +.|..+|--.+..-...|+.+...++|++.+.. ++|-..  .|...|        -.=....+++.+.++++...+.
T Consensus       318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l  395 (677)
T KOG1915|consen  318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL  395 (677)
T ss_pred             C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            2 235566666677667777888888888777654 344211  111111        0112345666666666655542


Q ss_pred             CCCchHHHHHHH----HHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          268 DIMLDTVFFNCL----VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       268 ~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                       ++....+|..+    ...-.++.+...|.+++-..+  |..|...+|...|..-.+.++++....+++++.+.++
T Consensus       396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P  468 (677)
T KOG1915|consen  396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP  468 (677)
T ss_pred             -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence             11222233222    222234455555555555443  3355555666666555555666666666655555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.9e-09  Score=87.45  Aligned_cols=302  Identities=11%  Similarity=-0.013  Sum_probs=176.0

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHH
Q 018876           30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDA  107 (349)
Q Consensus        30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  107 (349)
                      +.....-|.++|++++|++.|.+....   .|+ +..|.....+|...|+|+++.+--.+..+.  .|+ +..+..-.++
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA  192 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence            445566788999999999999999987   577 888999999999999999998877777665  343 2344444455


Q ss_pred             HhccCchHHHHH----------------------HHHH---------Hhcc--CCCcchhhHHHHHHHHHc--------c
Q 018876          108 YGRAKMFAEMEL----------------------TLVK---------MLSE--DCEPDVWTMNCTLRAFGN--------S  146 (349)
Q Consensus       108 ~~~~~~~~~a~~----------------------~~~~---------~~~~--~~~~~~~~~~~l~~~~~~--------~  146 (349)
                      +-..|++++|+.                      ++.+         +...  .+-|+.....+....+..        .
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK  272 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence            555555555442                      2111         1111  122333333333322210        0


Q ss_pred             C--------------------CHHHHHHHHHHHHh---cCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876          147 G--------------------QIDTMEKCYEKFQS---AGIQPS---------INTFNILLDSYGKAGHFEKMSAVMEYM  194 (349)
Q Consensus       147 ~--------------------~~~~a~~~~~~~~~---~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (349)
                      +                    .+..|...+.+-..   .....+         ..+.......+.-.|+.-.|..-|+..
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence            0                    11112221111100   000111         222222223344567777777777777


Q ss_pred             HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018876          195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV  274 (349)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  274 (349)
                      .+....+ ...|--+...|....+.++.+..|+.....+ +-++.+|..-.+...-.+++++|..-|++.+...+. +..
T Consensus       353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~  429 (606)
T KOG0547|consen  353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY  429 (606)
T ss_pred             HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence            6665442 2235556666777777777777777766554 344556666666666666777777777776665532 555


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .|-.+..+..+.+++++++..|++.+.+ ++--+..|+.....+...++++.|.+.++...++.+.
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            5666666666667777777777776665 3334566666666777777777777777766666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.39  E-value=5.4e-10  Score=94.15  Aligned_cols=238  Identities=15%  Similarity=0.103  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCchH-HHHHHHHHHhccCchHHHHHHHHHHhcc-----C--
Q 018876           63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-----GI-RPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSE-----D--  128 (349)
Q Consensus        63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--  128 (349)
                      ..+...+...|...|+++.|+.++....+.     |. .|... ..+.+...|...+++.+|..+|+++...     |  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            345555777778888888888777776554     21 22332 3334666777888888888888777643     1  


Q ss_pred             CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 018876          129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI-QPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKY---H  198 (349)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  198 (349)
                      .+.-..+++.|...|.+.|++++|...++...+.     |. .|. ...++.+...++..+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            1223456677777888888888877777665431     11 122 223566677788888888888888765432   1


Q ss_pred             CCC----chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-
Q 018876          199 YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-  266 (349)
Q Consensus       199 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  266 (349)
                      +.+    -..+++.+...|...|++++|.++++.++..     +  ..-....++.+...|.+.+++.+|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            112    2567888888999999999999988887642     1  222245677888888888888888888876432 


Q ss_pred             ---CCC--CchHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876          267 ---SDI--MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       267 ---~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                         .|+  +-...+|..|...|.+.|+++.|.++.+...
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               222  2235678889999999999999998887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.38  E-value=1.5e-09  Score=79.61  Aligned_cols=200  Identities=15%  Similarity=0.009  Sum_probs=135.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR  215 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (349)
                      ...+.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            3445556777777777777777777764 335666777777777777777777777777766543 56667777777777


Q ss_pred             cCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876          216 AGDLKQMEYLFRLMRSERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG  294 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  294 (349)
                      .|++++|...|++.......+ -..+|..+.-+..+.|+.+.|...+++..+.... .+...-.+.....+.|++..|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence            777777777777776542222 2356777777777777777777777777766543 34455566677777777777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       295 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      .++.....+. ++..+....|+.-.+.|+.+.+.++-..+.+.-+
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP  238 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP  238 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            7777766654 6777777777777777777777776666555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.37  E-value=2.9e-09  Score=85.85  Aligned_cols=222  Identities=10%  Similarity=-0.013  Sum_probs=118.8

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPD--VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE  116 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  116 (349)
                      ..+..+.++.-+.++.......|+  ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            334556666666666543222222  2445556666666777777777777766653 2345666667777777777777


Q ss_pred             HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876          117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK  196 (349)
Q Consensus       117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (349)
                      |...|++..+.. +-+...+..+..++...|++++|.+.++...+..  |+..........+...++.++|...+.+...
T Consensus       117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            777777766543 2234555666666666777777777777766653  2211111122223345567777777755433


Q ss_pred             cCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018876          197 YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI  269 (349)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  269 (349)
                      .. .|+...+ .+.  ....|+...+ ..+..+.+.   .+   +.....|..+...+...|++++|...|+...+.++
T Consensus       194 ~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        194 KL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             hC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            22 1222111 122  2223444333 233333211   10   11234666777777777777777777777776553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=9.9e-09  Score=81.78  Aligned_cols=291  Identities=9%  Similarity=-0.028  Sum_probs=191.4

Q ss_pred             CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHH
Q 018876           40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEME  118 (349)
Q Consensus        40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~  118 (349)
                      .++...|...+-.+......+-|+.....+..++...|+.++|+..|++....  .|+ ........-.+.+.|+++...
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~  286 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS  286 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence            34444555554444444344667778888888888899999999888887765  232 222222333445677777777


Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                      .+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...+-.-...+...+++++|.-.|+..+...
T Consensus       287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            7777666432 2233344444455556778888888888877654 2245555555567778888888888888887764


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH-HHHH-hcCChhhHHHHHHHHhhCCCCchHHHH
Q 018876          199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV-RAYG-HAGKPEKLGSVLRFIDNSDIMLDTVFF  276 (349)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~  276 (349)
                      + -+...|.-|+.+|...|.+.+|...-+..... .+.+..+.+.+. ..|. ....-++|.++++......+. -....
T Consensus       365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV  441 (564)
T KOG1174|consen  365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAV  441 (564)
T ss_pred             h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHH
Confidence            3 36788888898888888888887776655432 233444444432 2222 223356777888777665421 24456


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       277 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +.+...+...|..+.+..+++.....  .||....+.|.+.+...+.+.+|.+.|....+.++
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence            66777788888888888888877764  67888888888888888888888887776665544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=3.1e-09  Score=87.79  Aligned_cols=272  Identities=8%  Similarity=-0.024  Sum_probs=215.0

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      ..+++.+..++++.+.+.. +++...+..=|.++...|+..+-..+=.++.+..  |....+|-.+...|...|+..+|.
T Consensus       256 ~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seAR  332 (611)
T KOG1173|consen  256 YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEAR  332 (611)
T ss_pred             HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHH
Confidence            4678899999999998874 7788888888889999999988888888888764  566788999999999999999999


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876           84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG  163 (349)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  163 (349)
                      +.|.+...... .=...|-.....|+-.|..++|...+...-+-- +-...-+-.+.--|.+.++.+.|.++|.+.....
T Consensus       333 ry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~  410 (611)
T KOG1173|consen  333 RYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA  410 (611)
T ss_pred             HHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            99998766531 124578888899999999999999887765431 1111112234445778999999999999988763


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018876          164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--YS----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS  237 (349)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  237 (349)
                       +.|+...+-+.-.....+.+.+|...|+.....-  ..    .-..+++.|..++.+.+.+++|+..+++..... +.+
T Consensus       411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~  488 (611)
T KOG1173|consen  411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD  488 (611)
T ss_pred             -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence             5578888888877888899999999998776211  11    134568889999999999999999999998765 678


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876          238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG  284 (349)
Q Consensus       238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  284 (349)
                      ..++.++.-.+...|+++.|...|.+....  .|+..+...++..+.
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI  533 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence            899999999999999999999999988764  567666666665443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.34  E-value=6.1e-09  Score=83.97  Aligned_cols=227  Identities=9%  Similarity=-0.040  Sum_probs=160.2

Q ss_pred             CChhHHHHHHHHHHhCC-CCCc--hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876           77 FAFDKVQALLSDMSTQG-IRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME  153 (349)
Q Consensus        77 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  153 (349)
                      +..+.++.-+.+++... ..|+  ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45667777777777542 1222  3567778888999999999999999998875 456788999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      ..|++..+.. +-+..++..+..++...|++++|...++...+..+. +. ............++.++|...+.......
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999998864 335677888888899999999999999999886533 22 22222223445678999999997755432


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh---CCCC---chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876          234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN---SDIM---LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD  307 (349)
Q Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  307 (349)
                       .|+...+ .  ......|+...+ ..+..+.+   ..+.   .....|..+...+.+.|++++|...|++....++ ||
T Consensus       196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~  269 (296)
T PRK11189        196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN  269 (296)
T ss_pred             -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence             3332222 2  233345666554 34444432   1111   1346789999999999999999999999998753 35


Q ss_pred             HHHHHH
Q 018876          308 KVTYRT  313 (349)
Q Consensus       308 ~~~~~~  313 (349)
                      ..-+..
T Consensus       270 ~~e~~~  275 (296)
T PRK11189        270 FVEHRY  275 (296)
T ss_pred             HHHHHH
Confidence            444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.34  E-value=8e-08  Score=80.33  Aligned_cols=308  Identities=12%  Similarity=-0.006  Sum_probs=186.8

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH--
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT--  103 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  103 (349)
                      ...|..+...+...|+.+.+.+.+....+.....++. .........+...|++++|.+.+++..+.. +.+...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            4556667777777788888777776655442212332 222233445667899999999999988763 334434442  


Q ss_pred             -HHHHHhccCchHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          104 -LIDAYGRAKMFAEMELTLVKMLSEDCEPD-VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       104 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                       ........+....+.+.+....  ...|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~  161 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence             1112222455555555555421  12333 3344455667889999999999999998875 44667788888899999


Q ss_pred             CCHHHHHHHHHHHHhcCCC-Cc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCcHHHH-H--HHHHHHHhcCCh
Q 018876          182 GHFEKMSAVMEYMQKYHYS-WT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPSCVTL-C--SLVRAYGHAGKP  254 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~  254 (349)
                      |++++|...+++....... |+  ...|..+...+...|++++|..++++...... .+..... .  .++.-+...|..
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  241 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV  241 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence            9999999999988765422 22  23455678888999999999999999864332 1211111 1  233334444543


Q ss_pred             hhHHHH--H-HHHhhCCC-CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC------CCHHHHHHHH--HHHHccC
Q 018876          255 EKLGSV--L-RFIDNSDI-MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK------PDKVTYRTMV--RAYSTNG  322 (349)
Q Consensus       255 ~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~~~~g  322 (349)
                      ..+.++  + ........ ............++...|+.+.|..+++.+......      ....+-..++  .++...|
T Consensus       242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g  321 (355)
T cd05804         242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG  321 (355)
T ss_pred             ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence            333333  1 21111100 111222235677788899999999999988764221      0111222233  3467889


Q ss_pred             chhhhHHHHHHHHHhH
Q 018876          323 MKNHAKEFQDLVEKMD  338 (349)
Q Consensus       323 ~~~~a~~~~~~~~~~~  338 (349)
                      +.+.|.+.+.......
T Consensus       322 ~~~~A~~~L~~al~~a  337 (355)
T cd05804         322 NYATALELLGPVRDDL  337 (355)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999887766543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.6e-08  Score=80.71  Aligned_cols=278  Identities=11%  Similarity=0.020  Sum_probs=208.8

Q ss_pred             CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH
Q 018876           23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY  101 (349)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (349)
                      ++-|+.....+..++...|+.++|+..|++....   .|+. .....-.-.+.+.|+.+....+...+.... +-+...|
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w  303 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW  303 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence            5667888999999999999999999999998865   3433 333333334567889998888888887652 2344555


Q ss_pred             HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                      -.-.......++++.|+.+-++.++.. +.+...+-.-...+...++.++|.-.|....... +-+..+|.-|+.+|...
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence            555556667789999999999988764 4445555555567788999999999999887763 45888999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHH
Q 018876          182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVI-DAFG-RAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLG  258 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~  258 (349)
                      |++.+|..+-+...+. ++.+..+...+. ..+. ....-++|..+++.....  .|+ ....+.+...|...|..+.+.
T Consensus       382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i  458 (564)
T KOG1174|consen  382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII  458 (564)
T ss_pred             chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence            9999998877665543 233566666552 2222 333457899999887654  343 467788889999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 018876          259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR  312 (349)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  312 (349)
                      .+++.....  .||....+.|...+...+.+++|++.|......+.. |..+..
T Consensus       459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~  509 (564)
T KOG1174|consen  459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR  509 (564)
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence            999988764  479999999999999999999999999988877432 344433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=4.3e-08  Score=84.09  Aligned_cols=333  Identities=13%  Similarity=0.069  Sum_probs=195.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChhH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK-AFAFDK   81 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~   81 (349)
                      ..+|+++.+.+.|++.... .......|+.+...+...|.-..|..+.+.-.....-+++...+-..-..|.+ .+..++
T Consensus       334 ~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee  412 (799)
T KOG4162|consen  334 SRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE  412 (799)
T ss_pred             HHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence            3466777777777766543 23345567777777777777777777776655442212333333333333333 344555


Q ss_pred             HHHHHHHHHhC--CC--CCchHHHHHHHHHHhcc-----------CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018876           82 VQALLSDMSTQ--GI--RPNTVTYNTLIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS  146 (349)
Q Consensus        82 a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  146 (349)
                      ++.+-.+....  +.  ......|..+.-+|...           ....++++.+++..+.+ +.|......+.--|+-.
T Consensus       413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~  491 (799)
T KOG4162|consen  413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQ  491 (799)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHH
Confidence            54444444331  10  01122222222222211           11334455555554443 12222222233334555


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC--------------------------
Q 018876          147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HY--------------------------  199 (349)
Q Consensus       147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--------------------------  199 (349)
                      ++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... +.                          
T Consensus       492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~  571 (799)
T KOG4162|consen  492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCI  571 (799)
T ss_pred             HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHH
Confidence            666666666666666544445555655555555555555555544332210 00                          


Q ss_pred             ---------------------------------------------------------------------CCc------hH
Q 018876          200 ---------------------------------------------------------------------SWT------IV  204 (349)
Q Consensus       200 ---------------------------------------------------------------------~~~------~~  204 (349)
                                                                                           .|+      ..
T Consensus       572 ~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~  651 (799)
T KOG4162|consen  572 HKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQK  651 (799)
T ss_pred             HHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHH
Confidence                                                                                 000      12


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG  284 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  284 (349)
                      .|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|......++. ++.+..++...+.
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence            23344455556666666666666654332 344455666666777788889999988888776543 6778889999999


Q ss_pred             ccCChHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          285 RLKCFAEMKG--VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       285 ~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      +.|+..-|..  ++.++.+.+.. ++..|..+...+.+.|+.++|.+.|+-..++.++
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            9999888887  99999998754 8999999999999999999999999998888775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.32  E-value=7.4e-09  Score=76.09  Aligned_cols=196  Identities=16%  Similarity=0.025  Sum_probs=108.6

Q ss_pred             HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                      .-|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|..
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence            334445566666666666666666554 3344555556666666666666666666655543 22455555555556666


Q ss_pred             CCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018876          182 GHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV  260 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  260 (349)
                      |++++|...|+...... ..--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.......|++..|...
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence            66666666665554432 11124455555555556666666666666655543 22234455555556666666666666


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      ++.....+. ++..+.-..|+.-...|+.+.+-+.=.++..
T Consensus       196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            666555543 4555555555555566666555555444444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.28  E-value=5.1e-08  Score=81.47  Aligned_cols=291  Identities=13%  Similarity=0.048  Sum_probs=179.3

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchh---hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----hcC
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQ---SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL----KAF   77 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~   77 (349)
                      .|+.+.+.+.+....+.. +++..   ........+...|++++|.+.+++.....  +.+...+.. ...+.    ..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~   94 (355)
T cd05804          19 GGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSG   94 (355)
T ss_pred             cCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhccccc
Confidence            466777767676665542 22222   22233445678899999999999988763  344444442 22222    234


Q ss_pred             ChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018876           78 AFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY  156 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  156 (349)
                      ....+.+.+...  ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus        95 ~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l  171 (355)
T cd05804          95 MRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM  171 (355)
T ss_pred             CchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555541  122333 3444556678889999999999999999875 455677788889999999999999999


Q ss_pred             HHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchHHH-H--HHHHHHHhcCChHHHHHH--HH
Q 018876          157 EKFQSAGI-QPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-SWTIVTY-N--IVIDAFGRAGDLKQMEYL--FR  227 (349)
Q Consensus       157 ~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~  227 (349)
                      ++...... .++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|....+.+.  +.
T Consensus       172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~  251 (355)
T cd05804         172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA  251 (355)
T ss_pred             HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence            99877532 2232  3455788889999999999999999864432 1122111 1  223333344433333222  21


Q ss_pred             HHHhCCC--CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC------c--hHHHHHHHHHHHHccCChHHHHHHHH
Q 018876          228 LMRSERI--KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM------L--DTVFFNCLVDAYGRLKCFAEMKGVLE  297 (349)
Q Consensus       228 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~  297 (349)
                      .......  ............++...|+.+.|...++.+......      .  .....-....++...|++++|.+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~  331 (355)
T cd05804         252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG  331 (355)
T ss_pred             HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1111110  111122235677788899999999999887653211      0  11222233344668999999999998


Q ss_pred             HHHhc
Q 018876          298 VMQQR  302 (349)
Q Consensus       298 ~~~~~  302 (349)
                      .....
T Consensus       332 ~al~~  336 (355)
T cd05804         332 PVRDD  336 (355)
T ss_pred             HHHHH
Confidence            87754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.27  E-value=3.1e-07  Score=77.50  Aligned_cols=191  Identities=9%  Similarity=0.025  Sum_probs=101.9

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ...|+-++|......-...+ ..+.+.|+.+.-.+....++++|++.|......+  +.|...+.-+.-.-++.++++..
T Consensus        52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhH
Confidence            44566677776666655532 4456667777777777777777777777777653  45556666555555566666665


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHH------HHHHccCCHHHHHHH
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTL------RAFGNSGQIDTMEKC  155 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~  155 (349)
                      ......+.+.. +-....|..+..++.-.|+...|..+++...+.. ..|+...+....      ......|..+.|.+.
T Consensus       129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~  207 (700)
T KOG1156|consen  129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH  207 (700)
T ss_pred             HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            55555555441 1133445555555556666677766666665443 134433332222      122344444444444


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          156 YEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                      +..-... +......-.+-...+.+.+++++|..++..+...+
T Consensus       208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn  249 (700)
T KOG1156|consen  208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN  249 (700)
T ss_pred             HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence            4332221 11111111223344455566666666666665544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=1.4e-08  Score=79.47  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHc
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF-NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR-TMVRAYST  320 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~  320 (349)
                      .+.++.+..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|+.++-.+.   -+.+..+.. .+..-|.+
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk  473 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK  473 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence            4667777888999999999888776665 44454 556788899999999877654433   233444443 34456888


Q ss_pred             cCchhhhHHHHHHHHHhHHhhh
Q 018876          321 NGMKNHAKEFQDLVEKMDETCL  342 (349)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~~  342 (349)
                      .+.+=-|.+.|+.++.+++++.
T Consensus       474 ~~eFyyaaKAFd~lE~lDP~pE  495 (557)
T KOG3785|consen  474 ANEFYYAAKAFDELEILDPTPE  495 (557)
T ss_pred             HHHHHHHHHhhhHHHccCCCcc
Confidence            8988889999999998887653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.26  E-value=5.1e-09  Score=83.26  Aligned_cols=250  Identities=12%  Similarity=0.077  Sum_probs=147.1

Q ss_pred             HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876           36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA  115 (349)
Q Consensus        36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  115 (349)
                      -+.-.|++..++.-.+ .....+ ..+......+.+++...|+.+.+.   .++.... .|.......+...+...++-+
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            3445677777776555 322211 223344455667777777766543   3333332 566666655555554444555


Q ss_pred             HHHHHHHHHhccCCC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876          116 EMELTLVKMLSEDCE-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM  194 (349)
Q Consensus       116 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (349)
                      .+..-+++....... .+.........++...|++++|+++++..      .+.......+..+.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            566555555444323 23333333334566778888887776542      35666667777888888888888888888


Q ss_pred             HhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876          195 QKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM  270 (349)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  270 (349)
                      .+.+   +..+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++......+..
T Consensus       158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            7654   23334444444432    33578888888887543 4567777788888888888888888888887766543


Q ss_pred             chHHHHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 018876          271 LDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR  302 (349)
Q Consensus       271 ~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~  302 (349)
                       ++.+...++.+....|+. +.+.+.+.++...
T Consensus       234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence             566666677777777776 5566777777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.25  E-value=5.8e-10  Score=96.60  Aligned_cols=261  Identities=16%  Similarity=0.157  Sum_probs=178.4

Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876           49 LLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED  128 (349)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  128 (349)
                      ++-.+... |+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.          
T Consensus        12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            34444444 77999999999999999999999998 9999988888889999999999988888876654          


Q ss_pred             CCcchhhHHHHHHHHHccCCHHH---HHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHH---------HHH
Q 018876          129 CEPDVWTMNCTLRAFGNSGQIDT---MEKCYEKF----QSAGIQPSINTFNILLDSYGKAGHFEKMSA---------VME  192 (349)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---------~~~  192 (349)
                       .|.+.+|+.+..+|...||...   ..+.+..+    ...|+......+-..+.+ + -+-...|..         ++.
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~-p~~lpda~n~illlv~eglwa  156 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-C-PHSLPDAENAILLLVLEGLWA  156 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-C-cccchhHHHHHHHHHHHHHHH
Confidence             7888999999999999999755   22222222    223433222222222222 2 122222221         222


Q ss_pred             HHHhcC-CCCchHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          193 YMQKYH-YSWTIVTYNI---VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       193 ~~~~~~-~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      ...+.. ..|...-++.   +++-+..  .+.-..++........-.|+..+|..++.+-..+|+.+.|..++.+|.+.|
T Consensus       157 qllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g  234 (1088)
T KOG4318|consen  157 QLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG  234 (1088)
T ss_pred             HHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence            222222 1121111111   1222221  122233333333222115899999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH
Q 018876          269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      ++.+.+.|-.|+.+   .++...+..+++.|...|+.|+..|+.-.+-.+..+|....+.+
T Consensus       235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e  292 (1088)
T KOG4318|consen  235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE  292 (1088)
T ss_pred             CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence            99999888888766   88889999999999999999999999988888888776554444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.24  E-value=9.6e-10  Score=87.36  Aligned_cols=253  Identities=8%  Similarity=0.054  Sum_probs=167.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876           71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID  150 (349)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (349)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+.+.++   .++.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            33455788888886665 223222223445566778999999877654   3443333 666666655555554445555


Q ss_pred             HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876          151 TMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       151 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  229 (349)
                      .+..-++........+ +..........+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555555444333332 3333333334566789999999988643      36777788899999999999999999999


Q ss_pred             HhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 018876          230 RSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK  305 (349)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  305 (349)
                      .+..  .| .+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++....+..
T Consensus       158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            8653  33 455556655543    33689999999998775 4578899999999999999999999999998876543


Q ss_pred             CCHHHHHHHHHHHHccCch-hhhHHHHHHHHHhHH
Q 018876          306 PDKVTYRTMVRAYSTNGMK-NHAKEFQDLVEKMDE  339 (349)
Q Consensus       306 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~  339 (349)
                       ++.+...++.+....|+. +.+.+++..+.+..+
T Consensus       234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence             678888888888888887 567777777666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=8.2e-07  Score=74.31  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEH   52 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   52 (349)
                      +.+.|++++|++...++...+ +-+..++..-+-++.+.+++++|+.+.+.
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk   71 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK   71 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh
Confidence            457889999999999999875 55667777777788888888888866543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.18  E-value=7.5e-07  Score=75.31  Aligned_cols=328  Identities=13%  Similarity=0.104  Sum_probs=225.8

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA   84 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   84 (349)
                      .+++...+++.+.+.+ +.+....+.....-.+...|+-++|.+........+  ..+.+.|..+.-.+....++++|++
T Consensus        20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHH
Confidence            4566777777777776 345556666666666778899999999998887753  5677889998888888899999999


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-
Q 018876           85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-  163 (349)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  163 (349)
                      .|......+ +-|...+.-+.-.-++.++++.......+..+.. +.....|..+..++.-.|+...|..+++...+.. 
T Consensus        97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen   97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN  174 (700)
T ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999875 4477788877777788888888888777777653 4445678888888899999999999999988765 


Q ss_pred             CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018876          164 IQPSINTFNILL------DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS  237 (349)
Q Consensus       164 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  237 (349)
                      ..|+...+....      ....+.|..+.|.+.+......-+. ....-..-...+.+.+++++|..++..+...  .||
T Consensus       175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd  251 (700)
T KOG1156|consen  175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD  251 (700)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence            346666654433      3345678888888777665443211 2233334455677888899999988888765  355


Q ss_pred             HHHHHHHH-HHHHhcCChhhHH-HHHH----------------------------------HHhhCCC------------
Q 018876          238 CVTLCSLV-RAYGHAGKPEKLG-SVLR----------------------------------FIDNSDI------------  269 (349)
Q Consensus       238 ~~~~~~l~-~~~~~~~~~~~a~-~~~~----------------------------------~~~~~~~------------  269 (349)
                      ...|.... .++.+-.+.-++. .+|.                                  ...+.|+            
T Consensus       252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk  331 (700)
T KOG1156|consen  252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK  331 (700)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence            44443332 2221111111111 1111                                  1111111            


Q ss_pred             ----------------------------------CchHHHH--HHHHHHHHccCChHHHHHHHHHHHhcCCCCCH-HHHH
Q 018876          270 ----------------------------------MLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYR  312 (349)
Q Consensus       270 ----------------------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~  312 (349)
                                                        +|....|  ..++..|-+.|+++.|...++..++.  .|+. ..|.
T Consensus       332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~  409 (700)
T KOG1156|consen  332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL  409 (700)
T ss_pred             chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence                                              2334433  45677788899999999999998876  5553 4455


Q ss_pred             HHHHHHHccCchhhhHHHHHHHHHhHHhhh
Q 018876          313 TMVRAYSTNGMKNHAKEFQDLVEKMDETCL  342 (349)
Q Consensus       313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  342 (349)
                      .-.+.+.+.|+.+.|..+++..++++.+-.
T Consensus       410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  410 VKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            556788999999999999999988876543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=8.6e-08  Score=73.39  Aligned_cols=283  Identities=12%  Similarity=0.084  Sum_probs=178.8

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCChhHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI-LIKSCLKAFAFDKV   82 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a   82 (349)
                      +..+++.|++++..-.++. +.+......|..+|....++..|-..++++...   .|...-|.. -...+.+.+.+..|
T Consensus        22 ~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADA   97 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADA   97 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHH
Confidence            3445666777776666653 335666777777777777777777777777655   455544433 23556667777777


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHH--HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ  160 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  160 (349)
                      +.+...|...   |+...-..-+.+  ....+++..+..++++....+   +..+.+...-...+.|+++.|.+-|+...
T Consensus        98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl  171 (459)
T KOG4340|consen   98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL  171 (459)
T ss_pred             HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence            7777666543   222221111221  234566666666666655322   33344444445568899999999999887


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------c---------------hHHHHHHHHH
Q 018876          161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-------------T---------------IVTYNIVIDA  212 (349)
Q Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~l~~~  212 (349)
                      +-+--.....|+..+ +..+.++.+.|.+...++.++|++.             |               +..+|.-...
T Consensus       172 qvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI  250 (459)
T KOG4340|consen  172 QVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI  250 (459)
T ss_pred             hhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence            765444566777655 4556789999999998888776531             1               1233444444


Q ss_pred             HHhcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE  291 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  291 (349)
                      +.+.++++.|.+.+-.|.-+ ....|+.|...+.-.= ..+++....+-+..+...++ ....+|..++-.||+..-++.
T Consensus       251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l  328 (459)
T KOG4340|consen  251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL  328 (459)
T ss_pred             hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence            56788889998888888532 2345667766654322 23456666666666666655 346788888889999999999


Q ss_pred             HHHHHHHH
Q 018876          292 MKGVLEVM  299 (349)
Q Consensus       292 a~~~~~~~  299 (349)
                      |..++.+=
T Consensus       329 AADvLAEn  336 (459)
T KOG4340|consen  329 AADVLAEN  336 (459)
T ss_pred             HHHHHhhC
Confidence            88887543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.13  E-value=9.8e-07  Score=83.27  Aligned_cols=334  Identities=11%  Similarity=0.012  Sum_probs=203.4

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----CCCH--HHHHHHHHHHHhcC
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----QPDV--NTYSILIKSCLKAF   77 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~~   77 (349)
                      .|+++.+...++.+.......+..........+...|+++++...+.........     .+..  .....+...+...|
T Consensus       387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g  466 (903)
T PRK04841        387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG  466 (903)
T ss_pred             cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence            4555655555555422111112223334455566788999999888876542110     1111  12222334556789


Q ss_pred             ChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhcc----CC-CcchhhHHHHHHHHHccCC
Q 018876           78 AFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVWTMNCTLRAFGNSGQ  148 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~  148 (349)
                      +++.|...+++....-...+    ....+.+...+...|++++|...+++....    +. ......+..+...+...|+
T Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~  546 (903)
T PRK04841        467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF  546 (903)
T ss_pred             CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence            99999999988766311112    123455666677889999999988887643    11 1112344556667888999


Q ss_pred             HHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHhcC
Q 018876          149 IDTMEKCYEKFQSA----GIQ--P-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSWTIVTYNIVIDAFGRAG  217 (349)
Q Consensus       149 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~  217 (349)
                      ++.|...+++....    +..  + ....+..+...+...|++++|...+.+....    +.......+..+...+...|
T Consensus       547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G  626 (903)
T PRK04841        547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG  626 (903)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence            99999988876542    211  1 2233445556677789999999988876542    11112344555666777899


Q ss_pred             ChHHHHHHHHHHHhC--CCCCcHH--HH--HHHHHHHHhcCChhhHHHHHHHHhhCCCCch---HHHHHHHHHHHHccCC
Q 018876          218 DLKQMEYLFRLMRSE--RIKPSCV--TL--CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD---TVFFNCLVDAYGRLKC  288 (349)
Q Consensus       218 ~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~  288 (349)
                      +++.|...+......  .......  ..  ...+..+...|+.+.|...+...........   ...+..+..++...|+
T Consensus       627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~  706 (903)
T PRK04841        627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ  706 (903)
T ss_pred             CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence            999999988877542  1111110  10  1122344557888988888877654321111   1123456777888999


Q ss_pred             hHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          289 FAEMKGVLEVMQQR----GCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       289 ~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      +++|...+++....    |..++ ..+...+..++.+.|+.++|.+.+....++.
T Consensus       707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999887654    32222 3456667778899999999988888776654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.13  E-value=1.8e-06  Score=73.16  Aligned_cols=222  Identities=11%  Similarity=0.101  Sum_probs=144.1

Q ss_pred             CchHHHHHHHHHHhccCCCc------chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcC
Q 018876          112 KMFAEMELTLVKMLSEDCEP------DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAG  182 (349)
Q Consensus       112 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~  182 (349)
                      |+..+....+.+..+. +.|      -...|..+.+.|-..|+++.|..+|++..+...+--   ..+|......=.+..
T Consensus       361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            4455555666665543 111      134577788888999999999999999887654322   345666666666777


Q ss_pred             CHHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          183 HFEKMSAVMEYMQKYHYS-----------------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      +++.|.++++......-.                 -+...|+..++..-..|-++....+++.+.+..+ .++.......
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyA  518 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYA  518 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence            888888888776432111                 1345677777777778888889999999887764 3444444444


Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHH
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRTMV--RAYS  319 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~  319 (349)
                      ..+-...-++++.+++++-+..-..|+ ...|+..+..+.+   ....+.|..+|++..+ |++|...-+--|+  ..--
T Consensus       519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEE  597 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEE  597 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence            455566668888888887666533344 3467766666554   3468899999999998 6666543322222  2224


Q ss_pred             ccCchhhhHHHHHHHHH
Q 018876          320 TNGMKNHAKEFQDLVEK  336 (349)
Q Consensus       320 ~~g~~~~a~~~~~~~~~  336 (349)
                      +.|...+|..++++...
T Consensus       598 e~GLar~amsiyerat~  614 (835)
T KOG2047|consen  598 EHGLARHAMSIYERATS  614 (835)
T ss_pred             HhhHHHHHHHHHHHHHh
Confidence            45777777777776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=5.5e-08  Score=83.05  Aligned_cols=226  Identities=11%  Similarity=-0.012  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876           99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY  178 (349)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (349)
                      ..-..+...+...|-...|..++++..         .|...+-+|...|+..+|..+..+..+.  +|+...|..+.+..
T Consensus       399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL  467 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence            334456677788888999999888764         5677888999999999999998888773  78998999888887


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG  258 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  258 (349)
                      ....-++.|.++.+.....       .-..+.....+.+++.++.+.|+.-.+.. +....+|..+.-+..+.+++..|.
T Consensus       468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence            7777788888888765432       11122222334788999999998876654 445678888888888999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      +.|.......+ -+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+......|.+++|.+++..+..+.
T Consensus       540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            99988887653 367789999999999999999999999999887 3466778888888889999999999999998887


Q ss_pred             HhhhccC
Q 018876          339 ETCLAMK  345 (349)
Q Consensus       339 ~~~~~~~  345 (349)
                      ......+
T Consensus       618 ~~~~d~~  624 (777)
T KOG1128|consen  618 KKYKDDE  624 (777)
T ss_pred             hhcccch
Confidence            7655443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=1.2e-07  Score=72.69  Aligned_cols=294  Identities=13%  Similarity=0.075  Sum_probs=202.5

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH-HHH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-LID  106 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~  106 (349)
                      --+.+.+..+.+..++++|++++..-.+..  +.+....+.+..+|....++..|...++++-..  .|...-|.. -..
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ   86 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            346777888889999999999998887763  347788899999999999999999999999876  456555554 345


Q ss_pred             HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (349)
                      .+.+.+.+..|+++...|.+.. ..-......-.....+.+++..+..++++....|   +..+.........+.|+++.
T Consensus        87 SLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            6678899999999998887531 1111122222223456788888888888766433   44445555556678999999


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CcHH--------HHHHHH
Q 018876          187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-------------PSCV--------TLCSLV  245 (349)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l~  245 (349)
                      |.+-|+...+.+.-.....|+..+..| +.+++..|+++..+++++|++             ||..        .-+.++
T Consensus       163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~  241 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV  241 (459)
T ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence            999999887765443577788776555 678999999999999887653             1211        112233


Q ss_pred             H-------HHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876          246 R-------AYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA  317 (349)
Q Consensus       246 ~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  317 (349)
                      .       .+.+.++++.|.+.+..|.-. ....|+.+...+.-.- ..+++.+..+-+.-+...+.- ...||..++-.
T Consensus       242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll  319 (459)
T KOG4340|consen  242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLL  319 (459)
T ss_pred             HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence            3       345678888888888777532 2334666655443222 234455555556666666443 46788889899


Q ss_pred             HHccCchhhhHHHHH
Q 018876          318 YSTNGMKNHAKEFQD  332 (349)
Q Consensus       318 ~~~~g~~~~a~~~~~  332 (349)
                      |+++.-++-|..++.
T Consensus       320 yCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  320 YCKNEYFDLAADVLA  334 (459)
T ss_pred             HhhhHHHhHHHHHHh
Confidence            999988888776653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=7.6e-08  Score=80.03  Aligned_cols=253  Identities=10%  Similarity=0.029  Sum_probs=170.0

Q ss_pred             HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876           35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF  114 (349)
Q Consensus        35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (349)
                      .-+.+.|++.+|.-.|+...+..  |.+...|..|.......++-..|+..+.+..+.. +-|......|.-.|...|.-
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            34567788888888888777663  5677788888888888888888888888877763 33566677777778888888


Q ss_pred             HHHHHHHHHHhccCCC--------cchhhHHHHHHHHHccCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876          115 AEMELTLVKMLSEDCE--------PDVWTMNCTLRAFGNSGQIDTMEKCYEKF-QSAGIQPSINTFNILLDSYGKAGHFE  185 (349)
Q Consensus       115 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (349)
                      ..|++.++..+....+        ++...-..  ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|+++
T Consensus       370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            8888888777543210        00000000  1222233334444444443 44444467777777877888888888


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      .|...|+.+....+. |..+||.|...++...+..+|+..|++.++.  .|. +.+...|.-+|...|.+.+|.+.|-.+
T Consensus       448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            888888888877644 7888888888888888888888888888765  343 344555667788888888888777554


Q ss_pred             hhC---------CCCchHHHHHHHHHHHHccCChHHHHHH
Q 018876          265 DNS---------DIMLDTVFFNCLVDAYGRLKCFAEMKGV  295 (349)
Q Consensus       265 ~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~  295 (349)
                      +..         ...++..+|..|=.++...++.+.+...
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            321         1223556777777777777777755444

>PLN02789 farnesyltranstransferase

Probab=99.08  E-value=5.7e-07  Score=72.66  Aligned_cols=214  Identities=9%  Similarity=-0.064  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018876           66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG  144 (349)
Q Consensus        66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  144 (349)
                      +..+-..+...+..++|+.+..+++... +-+..+|+..-.++...| .+++++..++++.+.. +.+..+|+.....+.
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~  117 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence            4444445555677778888888777753 223445555555555555 5677777777777654 334445655544455


Q ss_pred             ccCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---CCh
Q 018876          145 NSGQI--DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA---GDL  219 (349)
Q Consensus       145 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  219 (349)
                      +.|..  +++..+++++.+.. +-+..+|+.....+...|+++++++.++++.+.++. +...|+.....+.+.   |..
T Consensus       118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            55542  55677777776664 336677777777777777777777777777776644 566666655554443   222


Q ss_pred             ----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876          220 ----KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR  285 (349)
Q Consensus       220 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  285 (349)
                          ++...+..+++... +-+...|+.+...+...    ++..+|..++......++ .+......|+..|+.
T Consensus       196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence                34455554554443 34455666655555542    223446666655554432 245555566666654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.4e-06  Score=68.79  Aligned_cols=327  Identities=14%  Similarity=0.093  Sum_probs=207.3

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~   81 (349)
                      ...|+++.|+..|.+..... ++|...|..-..+|...|++++|++=-.+.++.   .|+ ...|+....++.-.|++++
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             cccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHH
Confidence            56899999999999998875 568888999999999999999999888777765   455 4679999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhcc----------------------------Cc--------------------
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRA----------------------------KM--------------------  113 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------~~--------------------  113 (349)
                      |+..|.+-++.. +-+...+..+..++...                            ..                    
T Consensus        89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~  167 (539)
T KOG0548|consen   89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN  167 (539)
T ss_pred             HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence            999998877652 22444455555444111                            00                    


Q ss_pred             ---hHHHHHHHHHH-----hccC-------CCc----------------------chhhHHHHHHHHHccCCHHHHHHHH
Q 018876          114 ---FAEMELTLVKM-----LSED-------CEP----------------------DVWTMNCTLRAFGNSGQIDTMEKCY  156 (349)
Q Consensus       114 ---~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~  156 (349)
                         +..+...+...     ...+       ..|                      -..-...+.++..+..++..+.+.+
T Consensus       168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y  247 (539)
T KOG0548|consen  168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY  247 (539)
T ss_pred             cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence               00111100000     0000       011                      0111334555566666777777777


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH-------HHHHHhcCChHHHHHHHHHH
Q 018876          157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV-------IDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~  229 (349)
                      ....+..  -+..-++....+|...|....+...-....+.|.. ...-|+.+       ..++.+.++++.+...|.+.
T Consensus       248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence            7777654  35555666666777777777766666555554432 22223333       23445566777788777776


Q ss_pred             HhCCCCCcHHHH-------------------------HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876          230 RSERIKPSCVTL-------------------------CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG  284 (349)
Q Consensus       230 ~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  284 (349)
                      ......|+...=                         ..-...+.+.|++..|...+.+++...+ -|...|....-+|.
T Consensus       325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~  403 (539)
T KOG0548|consen  325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYL  403 (539)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence            554434432211                         1113345667888888888888887764 47788888888888


Q ss_pred             ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +.|.+..|++=.+..++.+ ++....|..=..++....+++.|.+.++.-.+.++
T Consensus       404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            8888888887777776652 12344455545555566677777777776666554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.01  E-value=9.6e-06  Score=68.93  Aligned_cols=152  Identities=12%  Similarity=0.099  Sum_probs=76.8

Q ss_pred             CCCChHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            4 KCKQPEKAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ++|++......|++.... -+.-....|...+......+-++.++.++++..+.     ++..-+--+..+++.+++++|
T Consensus       114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~ea  188 (835)
T KOG2047|consen  114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEA  188 (835)
T ss_pred             hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHH
Confidence            344555555555544432 12223344555555555555555555555555533     122234445555555555555


Q ss_pred             HHHHHHHHhCC------CCCchHHHHHHHHHHhccCch---HHHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHH
Q 018876           83 QALLSDMSTQG------IRPNTVTYNTLIDAYGRAKMF---AEMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDT  151 (349)
Q Consensus        83 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~  151 (349)
                      .+.+.......      .+-+...|..+-....+.-+.   -....+++.+...  -+|  ...|..|..-|.+.|.+++
T Consensus       189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ek  266 (835)
T KOG2047|consen  189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEK  266 (835)
T ss_pred             HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHH
Confidence            55555543321      122333444443333333221   1222233333322  223  3567888899999999999


Q ss_pred             HHHHHHHHHhc
Q 018876          152 MEKCYEKFQSA  162 (349)
Q Consensus       152 a~~~~~~~~~~  162 (349)
                      |..+|++....
T Consensus       267 arDvyeeai~~  277 (835)
T KOG2047|consen  267 ARDVYEEAIQT  277 (835)
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.01  E-value=9.9e-07  Score=80.85  Aligned_cols=206  Identities=11%  Similarity=0.040  Sum_probs=98.1

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN  102 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  102 (349)
                      +...|-.-|..+.+.+++++|.+++++....-++...   ...|.++++.-..-|.-+...++|+++.+.-  -.-..|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            3444555555555555556655555555443221111   1233344444444444455555555554431  1223444


Q ss_pred             HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc
Q 018876          103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKA  181 (349)
Q Consensus       103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  181 (349)
                      .|...|.+.+.+++|.++++.|.+.- ......|...+..+.+..+-+.|..++.+..+.-.+ -......-.+..-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            55555555555555555555555442 133444555555555555555555555554443110 0122233333444455


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018876          182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK  235 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  235 (349)
                      |+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....++.
T Consensus      1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            5555555555555444322 3455555555555555555555555555554443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=2.3e-07  Score=77.29  Aligned_cols=254  Identities=10%  Similarity=0.005  Sum_probs=188.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876           71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID  150 (349)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (349)
                      .-+.+.|++.+|.-.|+...+.. +-+...|..|...-...++-..|+..+++..+.. +-+....-.|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence            34678899999999999998874 4478899999999999999999999999998765 456677788888899999999


Q ss_pred             HHHHHHHHHHhcCC------C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          151 TMEKCYEKFQSAGI------Q--PSINTFNILLDSYGKAGHFEKMSAVMEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       151 ~a~~~~~~~~~~~~------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                      .|.+.++.-+....      .  ++...-..  ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            99999988754321      0  01110000  1222222334445555444 444545788888899888999999999


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      |.+.|+.++... +-|..+|+.|...++...+.++|+..|.++.+..+. =+++...|.-.|+..|.+++|.+.|-..+.
T Consensus       449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            999999998765 567789999999999999999999999999986543 244555688899999999999988766543


Q ss_pred             c---------CCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876          302 R---------GCKPDKVTYRTMVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       302 ~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~  330 (349)
                      .         +..++...|..|=.++.-.++.|-+.++
T Consensus       527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            2         1223456787777777777777755544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.00  E-value=5.1e-06  Score=65.21  Aligned_cols=305  Identities=11%  Similarity=0.017  Sum_probs=208.5

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH-HH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN-TL  104 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l  104 (349)
                      ++.-..-+...+...|++.+|+.-|....+..  +.+-.++-.-...|...|+...|+.-+.+.++.  +||-..-. .-
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            45556667777888889999998888877642  233344445566788888888888888887775  56643221 12


Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCc------------ch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEP------------DV--WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT  170 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (349)
                      ...+.+.|.++.|..-|+.+++.....            ..  ......+..+...|+...|+.....+.+.. +-|...
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l  191 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL  191 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence            345678899999999998888764211            11  112233455667888889999988888863 457888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH----HHH---
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT----LCS---  243 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~---  243 (349)
                      +..-..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++..+.  .||...    |..   
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK  268 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence            888888999999999998888877766533 5566666677777888888888888877654  344321    211   


Q ss_pred             H------HHHHHhcCChhhHHHHHHHHhhCCCCchHH---HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHH
Q 018876          244 L------VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV---FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRT  313 (349)
Q Consensus       244 l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~  313 (349)
                      +      +......+++.++....+...+..+.....   .+..+-.++...|++.+|++...+..+.  .|| ..++.-
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d  346 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD  346 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence            1      122344566777777777766655432222   3444556677788899999888888875  444 777777


Q ss_pred             HHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          314 MVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       314 l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      -..+|.-..+++.|+.-++...+.+++
T Consensus       347 RAeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  347 RAEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence            778888888888888888877776554

>PLN02789 farnesyltranstransferase

Probab=99.00  E-value=2.6e-06  Score=68.87  Aligned_cols=215  Identities=7%  Similarity=-0.006  Sum_probs=145.1

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDA  107 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  107 (349)
                      ++..+-..+...++.++|+.+.+++....  +-+..+|+....++...+ ++++++..++++.... +.+..+|+..-..
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            44555566777788889999998888763  344556766666666666 5788888888888764 3355667665555


Q ss_pred             HhccCc--hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C
Q 018876          108 YGRAKM--FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA---G  182 (349)
Q Consensus       108 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~  182 (349)
                      +.+.|.  .++++..++++.+.. +-+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+.   |
T Consensus       116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence            555555  366788888887665 556778888888888888899999999998887644 666666665555544   2


Q ss_pred             CH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          183 HF----EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       183 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      ..    ++......++....+. +...|+.+...+...    +...+|...+.+....+ +.+...+..++..|+.
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            22    4566666666666543 777888777777663    33456777777665543 3455666666666664

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.99  E-value=1.5e-06  Score=79.77  Aligned_cols=250  Identities=10%  Similarity=0.066  Sum_probs=191.6

Q ss_pred             HHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc-CCC---cchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCE---PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      |+++.... +-+...|-..|......++.++|.++.++.+.. ++.   --...|.++++.-..-|.-+...++|+++.+
T Consensus      1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            44444442 335667888898999999999999999988753 111   1134577777777777888889999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHH
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PSCVT  240 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~  240 (349)
                      .-  .....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-++|..++.++.+.-.+ -....
T Consensus      1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred             hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence            62  2455688999999999999999999999987633 47889999999999999999999999988764211 12334


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 018876          241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK--VTYRTMVRAY  318 (349)
Q Consensus       241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~  318 (349)
                      ....+..-.+.|+.+.+..+|+......++ -...|+..|+.-.++|+.+.+..+|++....++.|-.  ..|...+..-
T Consensus      1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence            444555567889999999999998876543 6789999999999999999999999999999887753  5677777766


Q ss_pred             HccCchhhhHHHHHHHHHhHHh
Q 018876          319 STNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      ...|+-+.++.+-.+..+.-++
T Consensus      1682 k~~Gde~~vE~VKarA~EYv~s 1703 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKARAKEYVES 1703 (1710)
T ss_pred             HhcCchhhHHHHHHHHHHHHHH
Confidence            7778877766665555555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.97  E-value=2.3e-06  Score=73.87  Aligned_cols=285  Identities=11%  Similarity=0.051  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018876            9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD   88 (349)
Q Consensus         9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   88 (349)
                      .++++.+++..+.+ +.|+.+...+.--|+..++++.|.+...+..+..+ ..+...|..+.-.+.-.+++.+|+.+.+.
T Consensus       461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            46788888888775 44555555566668888999999999999888733 57888899999999999999999999888


Q ss_pred             HHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc---------------------C-------CCcchhhHHHHH
Q 018876           89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---------------------D-------CEPDVWTMNCTL  140 (349)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~  140 (349)
                      ....- .-|-.....-+..-..-++.++++.....+..-                     |       ..-...++..+.
T Consensus       539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls  617 (799)
T KOG4162|consen  539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS  617 (799)
T ss_pred             HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence            76641 111111111112222234444444433322210                     0       001112222222


Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018876          141 RAFGNSGQIDTMEKCYEKFQSAGIQ--PS------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA  212 (349)
Q Consensus       141 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  212 (349)
                      ......+  +.+..-. .+....+.  |+      ...|......+.+.+..++|...+.+..... +.....|......
T Consensus       618 ~l~a~~~--~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~  693 (799)
T KOG4162|consen  618 SLVASQL--KSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL  693 (799)
T ss_pred             HHHHhhh--hhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence            2111100  0000000 01111111  22      2234555667788889999998888887664 3367777777788


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH--HHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS--VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA  290 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  290 (349)
                      +...|.+++|.+.|......+ +-++.+.+++...+.+.|+..-|..  ++..+.+.++ .+...|..+...+.+.|+.+
T Consensus       694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence            889999999999999887654 4456788899999999999888887  9999998875 48899999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 018876          291 EMKGVLEVMQQR  302 (349)
Q Consensus       291 ~a~~~~~~~~~~  302 (349)
                      .|.+.|+...+.
T Consensus       772 ~Aaecf~aa~qL  783 (799)
T KOG4162|consen  772 QAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.95  E-value=8.6e-06  Score=64.00  Aligned_cols=288  Identities=10%  Similarity=-0.003  Sum_probs=206.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHH---HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCCh
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTAL---LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT-YSILIKSCLKAFAF   79 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~   79 (349)
                      ..|++..|+.-|....+.    |+..|..+   ...|...|+-..|+.-+..+.+.   +||-.. -..-...+.+.|.+
T Consensus        50 a~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGEL  122 (504)
T ss_pred             HhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccH
Confidence            467888888888888774    34444444   45688889999999999988876   677543 22334567899999


Q ss_pred             hHHHHHHHHHHhCCCCC--c----------hHH--HHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018876           80 DKVQALLSDMSTQGIRP--N----------TVT--YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN  145 (349)
Q Consensus        80 ~~a~~~~~~~~~~~~~~--~----------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  145 (349)
                      +.|..-|+..+++...-  +          ...  ....+..+...|+...|+.....+++.. +-|...+..-..+|..
T Consensus       123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~  201 (504)
T KOG0624|consen  123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA  201 (504)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence            99999999998873210  1          111  2233455667899999999999988764 5678888888999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH----HHHHH---------HHH
Q 018876          146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV----TYNIV---------IDA  212 (349)
Q Consensus       146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~  212 (349)
                      .|++..|+.=+....+.. ..++.++.-+-..+...|+.+.++...++..+.+  ||..    .|..+         +..
T Consensus       202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~  278 (504)
T KOG0624|consen  202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQ  278 (504)
T ss_pred             cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888777664 3466667677788889999999999998888765  3322    11111         122


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF  289 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  289 (349)
                      ....++|.++.+-.+...+......   ...+..+-.++...+++.+|++...++.+... .|..++-.-..+|.-...+
T Consensus       279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~Y  357 (504)
T KOG0624|consen  279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMY  357 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHH
Confidence            3456677777777777665532212   23344555667778889999999999887543 3578888888889888899


Q ss_pred             HHHHHHHHHHHhcC
Q 018876          290 AEMKGVLEVMQQRG  303 (349)
Q Consensus       290 ~~a~~~~~~~~~~~  303 (349)
                      +.|+.-|+...+.+
T Consensus       358 D~AI~dye~A~e~n  371 (504)
T KOG0624|consen  358 DDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99998888887653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=2.8e-06  Score=66.94  Aligned_cols=293  Identities=10%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             ChHHHHHHHHHHHhcCCCCchhhHHHHH-HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 018876            7 QPEKAHELFQAMVDEGCDANTQSFTALL-SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL   85 (349)
Q Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   85 (349)
                      .+++|++++.+....  .|+-...|.-+ -+|.+..-++-+.+++....+..  +.++.+.|.......+.=+-..|++-
T Consensus       166 HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E  241 (557)
T KOG3785|consen  166 HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDE  241 (557)
T ss_pred             HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHH
Confidence            356788888887765  35555555444 34666666777777777666542  33444555444433332111112111


Q ss_pred             HHH--------------HHhCCC------------CC-----chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh
Q 018876           86 LSD--------------MSTQGI------------RP-----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW  134 (349)
Q Consensus        86 ~~~--------------~~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  134 (349)
                      ...              +.++++            -|     -+..--.|+-.|.+.++..+|..+.+++..-  .|-..
T Consensus       242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey  319 (557)
T KOG3785|consen  242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY  319 (557)
T ss_pred             HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence            111              111110            01     0122233445677888888888887776411  22222


Q ss_pred             hHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018876          135 TMNCTLRA-----FGNSGQIDTMEKCYEKFQSAGIQPSI-NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI  208 (349)
Q Consensus       135 ~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (349)
                      ....+..+     .......+-|.+.|+..-+++..-|+ .--..+...+.-..++++++..+..+...-...|...+ .
T Consensus       320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N  398 (557)
T KOG3785|consen  320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N  398 (557)
T ss_pred             HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence            22222111     12222345566666665554433222 12334555556666788888888887776444344444 4


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH-HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      +.++.+..|++.+|+++|-.+....++ +..+|. .+.++|.+.+.++.|+.++-.+...+  -.......+..-|.+.+
T Consensus       399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~--e~fsLLqlIAn~CYk~~  475 (557)
T KOG3785|consen  399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS--ERFSLLQLIANDCYKAN  475 (557)
T ss_pred             HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch--hHHHHHHHHHHHHHHHH
Confidence            778889999999999999877654443 445554 45688889999999988876665432  12233445566788899


Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHH
Q 018876          288 CFAEMKGVLEVMQQRGCKPDKVTY  311 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~p~~~~~  311 (349)
                      .+--|.+.|+.+...+  |++..|
T Consensus       476 eFyyaaKAFd~lE~lD--P~pEnW  497 (557)
T KOG3785|consen  476 EFYYAAKAFDELEILD--PTPENW  497 (557)
T ss_pred             HHHHHHHhhhHHHccC--CCcccc
Confidence            9888989998888764  444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.88  E-value=4.7e-07  Score=77.57  Aligned_cols=219  Identities=10%  Similarity=-0.016  Sum_probs=155.0

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL  104 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  104 (349)
                      |--..-..+...+...|-...|..+|+++.          .|.-++.+|...|+..+|..+..+..+.  +|+...|..+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            333334456677888888888888887654          4556777888888888888888877773  6788888888


Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF  184 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (349)
                      .+......-+++|.++.+....+       .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+-.+..+.+++
T Consensus       464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence            88777766777787777665432       11112222234677888888887766653 34566777777777788888


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      +.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-.....|.++.|.+.+.++
T Consensus       536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            8888888777665433 56778888888888888888888888877766 455667777777777888888888877766


Q ss_pred             h
Q 018876          265 D  265 (349)
Q Consensus       265 ~  265 (349)
                      .
T Consensus       614 l  614 (777)
T KOG1128|consen  614 L  614 (777)
T ss_pred             H
Confidence            4

>PF12854 PPR_1: PPR repeat

Probab=98.88  E-value=3.3e-09  Score=54.15  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             CCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876          268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM  299 (349)
Q Consensus       268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  299 (349)
                      |+.||..+|+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555666666666666666666666665555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.87  E-value=1.1e-06  Score=68.76  Aligned_cols=187  Identities=10%  Similarity=0.017  Sum_probs=113.4

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYN  102 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  102 (349)
                      ....+..+...+...|++++|...|+++....+-.|. ..++..+..++...|++++|...++++.+.......  .++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            3455666677777788888888888777665211111 135566677777788888888888887765321111  1344


Q ss_pred             HHHHHHhcc--------CchHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018876          103 TLIDAYGRA--------KMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI  173 (349)
Q Consensus       103 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (349)
                      .+..++...        |++++|.+.++++....  |+. ..+..+.....    ...      ..        ......
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~  171 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKELY  171 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence            444444433        56777777777776542  222 11111111000    000      00        001124


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          174 LLDSYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      +...+.+.|++++|...++...+...  +.....+..+..++...|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55678889999999999998877642  223578888899999999999999988887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.87  E-value=2.3e-05  Score=74.21  Aligned_cols=299  Identities=12%  Similarity=0.032  Sum_probs=192.8

Q ss_pred             CCCChHHHHHHHHHHHhcCC------CCc--hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGC------DAN--TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIK   71 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~   71 (349)
                      ..|++++|...+....+.--      .+.  ......+...+...|++++|...++....... ..+.    ...+.+..
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~  499 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGE  499 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence            46889999998887754310      111  11222334456789999999999998765311 1221    34455666


Q ss_pred             HHHhcCChhHHHHHHHHHHhC----CC-CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCC--c-chhhHHHH
Q 018876           72 SCLKAFAFDKVQALLSDMSTQ----GI-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCT  139 (349)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l  139 (349)
                      .+...|++++|...+.+....    |. .....++..+...+...|++++|...+++....    +..  + ....+..+
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            778899999999998887653    11 111234555667788899999999998876543    211  1 22334455


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHH-----HHH
Q 018876          140 LRAFGNSGQIDTMEKCYEKFQSAG--IQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTY-----NIV  209 (349)
Q Consensus       140 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l  209 (349)
                      ...+...|++++|...+.+.....  ..+  ....+..+...+...|+.+.|...+.......... ....+     ...
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  659 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR  659 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence            566777899999999988875531  112  23344556667888999999999998875431110 11111     112


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-hHHHHHHHHH
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIML-DTVFFNCLVD  281 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~  281 (349)
                      +..+...|+.+.|...+...........   ...+..+..++...|+.++|...++.....    +..+ ...+...+..
T Consensus       660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~  739 (903)
T PRK04841        660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ  739 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            2444568899999998877543221111   111345677888999999999999887542    3222 2345667788


Q ss_pred             HHHccCChHHHHHHHHHHHhcC
Q 018876          282 AYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      ++.+.|+.++|...+.+..+..
T Consensus       740 a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        740 LYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            8999999999999999988764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.86  E-value=2e-06  Score=64.79  Aligned_cols=120  Identities=8%  Similarity=-0.002  Sum_probs=77.2

Q ss_pred             cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 018876          111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY-GKAGH--FEKM  187 (349)
Q Consensus       111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a  187 (349)
                      .++.+++...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            455566666666655554 5566667777777777777777777777766654 33566666666543 45555  4677


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      ..++++..+.++. +...+..+...+...|++++|...|+.+.+..
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            7777777766544 56666666667777777777777777776554

>PF12854 PPR_1: PPR repeat

Probab=98.85  E-value=5e-09  Score=53.45  Aligned_cols=32  Identities=31%  Similarity=0.836  Sum_probs=17.8

Q ss_pred             CCCCchhhHHHHHHHHHcCCChhHHHHHHHHh
Q 018876           22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHM   53 (349)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   53 (349)
                      |+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=2.6e-06  Score=64.35  Aligned_cols=160  Identities=14%  Similarity=0.036  Sum_probs=120.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA  216 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (349)
                      ..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++..... ++|...|+.+..+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            55666777778877777777665443 23466666678888888888888888888887765 45888888888888888


Q ss_pred             CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018876          217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL  296 (349)
Q Consensus       217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  296 (349)
                      |+.+.|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+. -|..+-..+..+....|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence            88888888888887653 33456777888888888888888888888876653 36667777888888888888888776


Q ss_pred             HHHH
Q 018876          297 EVMQ  300 (349)
Q Consensus       297 ~~~~  300 (349)
                      ..-.
T Consensus       226 ~~e~  229 (257)
T COG5010         226 VQEL  229 (257)
T ss_pred             cccc
Confidence            5443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.82  E-value=2.2e-06  Score=67.07  Aligned_cols=187  Identities=14%  Similarity=0.051  Sum_probs=122.4

Q ss_pred             CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--H
Q 018876          130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI--V  204 (349)
Q Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  204 (349)
                      ......+..+...+...|++++|...++++..... .+   ...+..+..++...|++++|...++++.+..+....  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            33456677777888889999999999998877532 12   245677778888999999999999988876533111  1


Q ss_pred             HHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018876          205 TYNIVIDAFGRA--------GDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF  275 (349)
Q Consensus       205 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  275 (349)
                      ++..+..++...        |++++|...++.+....  |+. ..+..+.....    ..      ...        ...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~--------~~~  168 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRL--------AGK  168 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHH--------HHH
Confidence            344444555443        66778888888877653  332 22221111100    00      000        011


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      ...+...|.+.|++.+|...++...+... .| ....+..+..++...|++++|...++.+...
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            12456678899999999999999887632 12 3567888999999999999999887776543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=3.9e-06  Score=63.38  Aligned_cols=159  Identities=13%  Similarity=0.007  Sum_probs=105.5

Q ss_pred             HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                      ..+-..+.-.|+-+....+..+..... +.|....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            445555666666666666655543221 3344445556777777777777777777776653 56777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876          182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL  261 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  261 (349)
                      |+++.|..-|.+..+.... ++..++.+...+.-.|+.+.|..++......+ .-+..+-..+.......|++++|..+.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            7777777777777766433 56667777777777777777777777776554 335566666777777777777777765


Q ss_pred             HHH
Q 018876          262 RFI  264 (349)
Q Consensus       262 ~~~  264 (349)
                      ..-
T Consensus       226 ~~e  228 (257)
T COG5010         226 VQE  228 (257)
T ss_pred             ccc
Confidence            543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=4.8e-05  Score=64.17  Aligned_cols=124  Identities=14%  Similarity=0.048  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CC
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFR--------LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DI  269 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~  269 (349)
                      ...-..+......|+++.|.+++.        .+.+.+..|  .+...+...+.+.++-+.|..++......      +-
T Consensus       377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s  454 (652)
T KOG2376|consen  377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS  454 (652)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence            344455566667788888887777        443333333  55666666677777766666666554321      00


Q ss_pred             CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHH
Q 018876          270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                      .--..++..+...-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-
T Consensus       455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~  514 (652)
T KOG2376|consen  455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS  514 (652)
T ss_pred             hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence            0111223333444456788888888888888753 45778888888888775 355555543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=5.5e-07  Score=67.77  Aligned_cols=132  Identities=13%  Similarity=0.096  Sum_probs=101.2

Q ss_pred             CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHH-hccCc--hHH
Q 018876           40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY-GRAKM--FAE  116 (349)
Q Consensus        40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~  116 (349)
                      .++.+++...++...+..  +.|...|..+...+...|++++|...|++..+.. +-+...+..+..++ ...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            666778887777777653  6788889999999999999999999999988875 33677777777764 56676  589


Q ss_pred             HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876          117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS  177 (349)
Q Consensus       117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  177 (349)
                      |.+++++..+.+ +.+...+..+...+...|++++|...|+++.+.. +|+..-+. +|..
T Consensus       129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~  186 (198)
T PRK10370        129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES  186 (198)
T ss_pred             HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence            999999998875 4467778888888889999999999999988874 44444443 3343

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.81  E-value=4.8e-05  Score=63.51  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      .-+|..++....+..-+..|..+|.++.+.+..+ ...+.++++..+| .++.+-|.++|+.-.+.- .-++..-...+.
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yld  443 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLD  443 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence            4467777777778888899999999998887666 6677788887665 578888999998755432 224555567788


Q ss_pred             HHHccCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876          282 AYGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK  336 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  336 (349)
                      -+...++-..+..+|++....++.|+  ...|..+|.--..-|+...+.++-++...
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            88889999999999999998866665  47899999988889998888877665433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=2.1e-05  Score=68.96  Aligned_cols=302  Identities=11%  Similarity=0.071  Sum_probs=175.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC--------CCCHHHHHHHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC--------QPDVNTYSILIKSC   73 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~~~   73 (349)
                      |...|+.+.|.+-++.+..      ..+|..+.+.|.+.++++-|.-.+-.|....+.        .|+ ..-....-..
T Consensus       738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA  810 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA  810 (1416)
T ss_pred             EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence            4567888988887777654      468999999999999998887777666543211        121 2222223334


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876           74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME  153 (349)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  153 (349)
                      ...|..++|+.+|.+-.+.         ..|=..|-..|.|++|.++-+.--+..+.   .||.....-+...++.+.|+
T Consensus       811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Al  878 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAAL  878 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHH
Confidence            5778889999998887653         34445677788999998877654332222   34555555556667777777


Q ss_pred             HHHHHHHh----------cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------
Q 018876          154 KCYEKFQS----------AG---------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------------  199 (349)
Q Consensus       154 ~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------  199 (349)
                      +.|++...          ..         -..|...|......+-..|+.+.|+.++......-.               
T Consensus       879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa  958 (1416)
T KOG3617|consen  879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAA  958 (1416)
T ss_pred             HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHH
Confidence            77654321          10         122445556666666677888888888776543210               


Q ss_pred             -----CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh---------------HHH
Q 018876          200 -----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK---------------LGS  259 (349)
Q Consensus       200 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------a~~  259 (349)
                           .-|....-.+.+.|-..|++.+|..+|.+..         +|...|+.|-..+--++               |-+
T Consensus       959 ~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aAr 1029 (1416)
T KOG3617|consen  959 RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAAR 1029 (1416)
T ss_pred             HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHH
Confidence                 1123333445555555555555555555442         22233332222211111               111


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH--------HHHhcC--CCCCHHHHHHHHHHHHccCchhhhHH
Q 018876          260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE--------VMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      .|++   .|.     -+...+..|-+.|.+.+|+++--        +++..+  ...|+...+.-..-+....++++|..
T Consensus      1030 YyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1030 YYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred             HHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence            1111   110     11233455677777777766521        122222  33467777777788888899999999


Q ss_pred             HHHHHHHhHH
Q 018876          330 FQDLVEKMDE  339 (349)
Q Consensus       330 ~~~~~~~~~~  339 (349)
                      ++-..++++.
T Consensus      1102 lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1102 LLCLAREFSG 1111 (1416)
T ss_pred             HHHHHHHHHH
Confidence            8887777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1e-05  Score=61.30  Aligned_cols=251  Identities=12%  Similarity=0.095  Sum_probs=157.2

Q ss_pred             HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876           34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM  113 (349)
Q Consensus        34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (349)
                      ++-+.-.|++..++..-......   +.+...-.-+-++|...|.+.....-.   .. |-.|....+..+......-++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~   87 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESN   87 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcch
Confidence            34455567888777776665544   234444444566777777766544322   22 223444444444444444444


Q ss_pred             hHHHH-HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876          114 FAEME-LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME  192 (349)
Q Consensus       114 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  192 (349)
                      .++.. ++.+.+.......+......-...|+..|++++|++..+...      +......=+..+.+..+.+-|.+.++
T Consensus        88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk  161 (299)
T KOG3081|consen   88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK  161 (299)
T ss_pred             hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433 334444444334443444444566888899999988876621      33333333455667788889999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          193 YMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      +|.+..   +..+.+.|..++.+    .+.+.+|.-+|++|-++ .+|++.+.+-...++...|++++|..+++......
T Consensus       162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            988764   66777777777653    45678888899988643 57888888888888889999999999998888776


Q ss_pred             CCchHHHHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 018876          269 IMLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR  302 (349)
Q Consensus       269 ~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~  302 (349)
                      .. ++.+...++..-...|.. +...+.+.+++..
T Consensus       238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            54 555555555555555554 3445566666654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.80  E-value=1.3e-05  Score=72.52  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL  104 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  104 (349)
                      +...+..|+..+...+++++|.++.+...+.   .|+. ..|-.+...+.+.++...+..+                 .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            4666777888887888888888888766655   2332 2233333345555554443333                 22


Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF  184 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (349)
                      +.......++..+..++..+...  .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.+.+...|... +.
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence            22233333333333333333332  2233355666777777777777777777777765 44677777777777777 77


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      ++|..++.+....               +...+++..+.++|.++..
T Consensus       166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~  197 (906)
T PRK14720        166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH  197 (906)
T ss_pred             HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence            7777777666543               3334455555555555544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.3e-05  Score=64.35  Aligned_cols=297  Identities=14%  Similarity=0.022  Sum_probs=195.5

Q ss_pred             HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCc
Q 018876           35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKM  113 (349)
Q Consensus        35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~  113 (349)
                      .+....|+++.|+..|.+....+  ++|...|+.-..++...|++++|.+=-.+-++.  .|+ ..-|.....++.-.|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence            45668899999999999998875  678899999999999999999998776666654  455 4578888888889999


Q ss_pred             hHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---C-------------------------------------------
Q 018876          114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---G-------------------------------------------  147 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-------------------------------------------  147 (349)
                      +++|...|.+-++.. +.+...++-+..++...   +                                           
T Consensus        86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            999999998877653 33344444444443110   0                                           


Q ss_pred             --CHHHHHHHHHHHHh--------cC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 018876          148 --QIDTMEKCYEKFQS--------AG-------IQP------------S----------INTFNILLDSYGKAGHFEKMS  188 (349)
Q Consensus       148 --~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~  188 (349)
                        +.+...+....+..        .+       ..|            |          ..-...+.++..+..+++.|.
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence              00000000000000        00       011            0          011244555566666777777


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHHhcCChhhHHHHH
Q 018876          189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-------LVRAYGHAGKPEKLGSVL  261 (349)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~  261 (349)
                      +-+....+..  -+..-++....+|...|.+......-....+.|- -...-|+.       +..++.+.++++.+...+
T Consensus       245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            7777776665  3566667777788888888777776666655542 12222333       333556667788888888


Q ss_pred             HHHhhCCCCchHH-------------------------HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          262 RFIDNSDIMLDTV-------------------------FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       262 ~~~~~~~~~~~~~-------------------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                      .+.......|+..                         -...-...+.+.|++..|...|.+++... +-|...|..-.-
T Consensus       322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa  400 (539)
T KOG0548|consen  322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA  400 (539)
T ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence            7765433333211                         11122555778899999999999999986 337889999999


Q ss_pred             HHHccCchhhhHHHHHHHHHhHHh
Q 018876          317 AYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      +|.+.|.+..|..-.+...+++++
T Consensus       401 c~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  401 CYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCch
Confidence            999999999998876666666543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.74  E-value=1.7e-06  Score=61.59  Aligned_cols=108  Identities=6%  Similarity=-0.054  Sum_probs=78.4

Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      .+|++..+.  .|+  .+..+...+...|++++|...|+......  +.+...|..+..++...|++++|...|+.....
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            455665554  233  35556677778888888888888877663  557777778888888888888888888888776


Q ss_pred             CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876           93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      . +.+...+..+..++...|++++|...|+.....
T Consensus        88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4 346677777777888888888888888887765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=4.3e-05  Score=58.03  Aligned_cols=105  Identities=15%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC  288 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  288 (349)
                      +.+..+.+-|...+++|.+.   .+..+.+.|..++.+    .+.+..|.-+|+++.+. ..|++.+.+-...++...|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            33444444555555554432   123334433333332    12344444455554442 22444444444444555555


Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876          289 FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG  322 (349)
Q Consensus       289 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  322 (349)
                      +++|..++++....... ++.+...++.+-...|
T Consensus       223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLG  255 (299)
T ss_pred             HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence            55555555554444322 3444444443333333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=3.5e-05  Score=68.99  Aligned_cols=146  Identities=11%  Similarity=-0.005  Sum_probs=103.4

Q ss_pred             CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 018876          130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV  209 (349)
Q Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  209 (349)
                      ..++..+..|.....+.|.+++|+.+++.+.+.. +-+......+...+.+.+++++|....++.....+. +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            4456777777777788888888888888877763 335556667777778888888888888887776644 66667777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL  279 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  279 (349)
                      ..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+..- +-...|+..
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~  228 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR  228 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence            777778888888888888877633 34467777777778888888888888877766432 333444443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=0.00012  Score=65.87  Aligned_cols=277  Identities=13%  Similarity=0.131  Sum_probs=131.1

Q ss_pred             HHHHHHHhcCCC--CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018876           13 ELFQAMVDEGCD--ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQALLSDM   89 (349)
Q Consensus        13 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   89 (349)
                      +++++..+.+++  .|+......+.++...+-..+-+++++++.-.+.. ..+...-|.|+-...+. +..++.+..+++
T Consensus       968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen  968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred             HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence            344444444332  24455556666677777777777777776543221 12222333333333333 334444454444


Q ss_pred             HhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC---------------------CCcchhhHHHHHHHHHccCC
Q 018876           90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------CEPDVWTMNCTLRAFGNSGQ  148 (349)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~  148 (349)
                      -.-. .|+      +...+...+-+++|..+|++..-.+                     --..+..|..+..+-.+.|.
T Consensus      1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence            3321 111      1222333344445555444331100                     00112334444444444444


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876          149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL  228 (349)
Q Consensus       149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  228 (349)
                      ..+|.+-|-+      ..|+..|..+++...+.|.+++-.+.+...++..-.|...  +.|+-+|++.++..+.++++. 
T Consensus      1120 v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred             hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence            4444443322      1144445555555555555555555554444443333222  244445555555444333321 


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH
Q 018876          229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK  308 (349)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  308 (349)
                            -|+......+..-|...+.++.|.-++..         ..-|..|...+...|+++.|...-+..      .+.
T Consensus      1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred             ------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence                  24444444455555555555555444432         234556666677777777776544322      267


Q ss_pred             HHHHHHHHHHHccCchhhh
Q 018876          309 VTYRTMVRAYSTNGMKNHA  327 (349)
Q Consensus       309 ~~~~~l~~~~~~~g~~~~a  327 (349)
                      .||..+-.+|...+.+.-|
T Consensus      1250 ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred             hHHHHHHHHHhchhhhhHH
Confidence            7888888888777665544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.69  E-value=3.4e-06  Score=60.08  Aligned_cols=87  Identities=3%  Similarity=-0.057  Sum_probs=34.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      .+...|++++|...|+......+. +...|..+..++...|++++|...|+...... +.+...+..+..++...|++++
T Consensus        33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence            333444444444444443333211 33333444444444444444444444443322 2233333333344444444444


Q ss_pred             HHHHHHHHh
Q 018876          257 LGSVLRFID  265 (349)
Q Consensus       257 a~~~~~~~~  265 (349)
                      |...++...
T Consensus       111 Ai~~~~~Al  119 (144)
T PRK15359        111 AREAFQTAI  119 (144)
T ss_pred             HHHHHHHHH
Confidence            444444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.69  E-value=1.6e-05  Score=71.16  Aligned_cols=148  Identities=8%  Similarity=0.007  Sum_probs=120.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018876          164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS  243 (349)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  243 (349)
                      .+.+...+..|.....+.|..++|..+++...+..+. +......++..+.+.+++++|...+++..... +-+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            4556888888999999999999999999999887644 67777888889999999999999999988765 456677788


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV  315 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  315 (349)
                      +..++...|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.- .|-...|+.++
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence            88889999999999999999988543 357888889999999999999999999988762 23445544443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=5.4e-05  Score=57.07  Aligned_cols=188  Identities=9%  Similarity=-0.007  Sum_probs=112.5

Q ss_pred             CChhHHHHHHHHHHhC---C-CCCchH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH
Q 018876           77 FAFDKVQALLSDMSTQ---G-IRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT  151 (349)
Q Consensus        77 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (349)
                      .+.++..+++.++...   | ..++.. .|..++-+....|+.+.|...++++..+- +-+...-..-...+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            4556666666655432   3 334443 23445555666677777777777766553 2222222222223445677777


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      |.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            777777777765 446666666666666667766777776666655 334777788887788888888888777777765


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCC
Q 018876          232 ERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSD  268 (349)
Q Consensus       232 ~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~  268 (349)
                      .. |.++..+..+...+...|.   .+.+.+.+....+..
T Consensus       183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            43 3344445555555544443   455667777666654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.68  E-value=8.3e-06  Score=73.80  Aligned_cols=251  Identities=11%  Similarity=0.099  Sum_probs=169.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH
Q 018876           60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC  138 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  138 (349)
                      +.+...+..|+..+...+++++|.++.+...+.  .|+.. .|-.+...+...++..++..+                 .
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~   88 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N   88 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence            556788999999999999999999999977765  34433 333333456666664444433                 3


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876          139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (349)
                      ++.......++..+..+...+.+.+  -+...+..+..+|-+.|+.++|..+++++.+..+. ++...|.+...|... +
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence            3444445555555555556666643  35557888999999999999999999999999844 899999999999999 9


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHHHHHHHH---HHH--hcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHH
Q 018876          219 LKQMEYLFRLMRSERIKPSCVTLCSLVR---AYG--HAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a  292 (349)
                      .++|..++.+....-+  +..-|+.+..   -++  ...+.+...++.+.+... +..--..++-.+-..|-..++|+++
T Consensus       165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~  242 (906)
T PRK14720        165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV  242 (906)
T ss_pred             HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence            9999999988875411  1111111111   111  223344455555555443 3333455666777888889999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       293 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      ..+++.+.+.... |.....-++.+|.  +.+.. ...++...++..
T Consensus       243 i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~  285 (906)
T PRK14720        243 IYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSD  285 (906)
T ss_pred             HHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence            9999999988544 6677788888776  33333 445555555543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=0.00011  Score=65.99  Aligned_cols=261  Identities=16%  Similarity=0.182  Sum_probs=134.6

Q ss_pred             CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHH
Q 018876           41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT  120 (349)
Q Consensus        41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  120 (349)
                      +.+++|.+.-++..       .+..|+.+..+-.+.+.+.+|.+-|-+.      -|+..|.-++....+.|.+++..+.
T Consensus      1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred             hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence            44555555444332       2356667777777777777766555322      1556677777777777777777777


Q ss_pred             HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018876          121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS  200 (349)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  200 (349)
                      +...++..-.|...  +.++-+|++.++..+.++++       ..|+......+.+-|...+.++.|.-++..       
T Consensus      1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred             HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence            76666555455443  45666777777766655443       234555555555556666666655555542       


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHH------------------------hCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMR------------------------SERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                        +..|..|...+...|++..|.+.-++.-                        ..++.....-...++..|...|-+++
T Consensus      1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHH
Confidence              3344555555555555555554443321                        01111122223334444444444444


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876          257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK  336 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  336 (349)
                      ...+++...... ......|+.|.-.|++-. +++..+-++-.-      +....-.+++++-+.--|.+..-++...++
T Consensus      1298 lIsl~Ea~LGLE-RAHMgmfTELaiLYskyk-p~km~EHl~LFw------sRvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1298 LISLLEAGLGLE-RAHMGMFTELAILYSKYK-PEKMMEHLKLFW------SRVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred             HHHHHHhhhchh-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            444444433221 123334444444444432 222222222211      111223467777777777777777777766


Q ss_pred             hHHh
Q 018876          337 MDET  340 (349)
Q Consensus       337 ~~~~  340 (349)
                      .+..
T Consensus      1370 yDNA 1373 (1666)
T KOG0985|consen 1370 YDNA 1373 (1666)
T ss_pred             hhHH
Confidence            6543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=0.00016  Score=59.80  Aligned_cols=121  Identities=17%  Similarity=0.056  Sum_probs=89.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  255 (349)
                      .+...|+.++|+..++.+....+ -|+..+......+...++.++|.+.++++....  |+ ......+..++.+.|++.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence            45567888888888888777643 366666677778888888888888888887653  43 556667778888888888


Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      +|..+++....... -|+..|..|..+|...|+..++.....++..
T Consensus       392 eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         392 EAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            88888888776654 4788888888888888887777766555443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=8.8e-05  Score=55.99  Aligned_cols=190  Identities=12%  Similarity=0.085  Sum_probs=139.9

Q ss_pred             CCChhHHHHHHHHhhcCC--C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876           40 SGLFDKAFSLLEHMKNTP--D-CQPDVN-TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA  115 (349)
Q Consensus        40 ~~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  115 (349)
                      ..+.++.++++.++....  + ..++.. .|..++-+....++.+.|...++.+... ++-+..+-..-.-.+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence            356777778777775431  1 234443 4666777888899999999999998876 3334333333334455679999


Q ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876          116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ  195 (349)
Q Consensus       116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (349)
                      +|.++++.+.+.+ +.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|+++.|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999887 667777777777777778888888888887776 56799999999999999999999999999998


Q ss_pred             hcCCCCchHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 018876          196 KYHYSWTIVTYNIVIDAFGRAG---DLKQMEYLFRLMRSER  233 (349)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  233 (349)
                      -..+. ++..+..+...+.-.|   +...+..+|.+..+..
T Consensus       182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            76532 5555566666554433   5667888888887654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.58  E-value=4.1e-06  Score=59.22  Aligned_cols=110  Identities=9%  Similarity=0.059  Sum_probs=66.5

Q ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 018876           14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG   93 (349)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   93 (349)
                      .|+...+.. +.+......+...+...|++++|.+.|+.+....  +.+...+..+..++...|++++|...++...+.+
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344444432 2234445556666666777777777776666542  3455666666666666777777777776666553


Q ss_pred             CCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876           94 IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                       +.+...+..+..++...|++++|...++...+.
T Consensus        82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             334555556666666667777777766666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=0.00014  Score=60.14  Aligned_cols=119  Identities=11%  Similarity=-0.034  Sum_probs=74.3

Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM  222 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  222 (349)
                      +...|++++|+..+..+.... +.|..........+.+.++..+|.+.++++....+. .....-.+..++.+.|++.+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence            345566777777777766552 335555556666667777777777777776665422 245555566666777777777


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      +.+++...... +-|+..|..|.++|...|+..++.....+.
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            77776665443 556666777777777777766666555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=2.8e-05  Score=68.19  Aligned_cols=240  Identities=14%  Similarity=0.102  Sum_probs=165.3

Q ss_pred             chhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------C
Q 018876           26 NTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-G--------I   94 (349)
Q Consensus        26 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~   94 (349)
                      |..+-..++..  |...|+.+.|.+-.+.++.       ...|..+.+.|.+.++.+-|.-.+..|... |        .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            55666666654  7788999999888876653       468999999999999988887777666432 1        1


Q ss_pred             CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018876           95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL  174 (349)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  174 (349)
                      .|+ .+=....-.....|.+++|..+|++..+         |..+=+.|-..|.+++|.++-+.=-...   =..||...
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y  864 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY  864 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence            222 2222233334567999999999999874         3445566778899999998765432221   23566667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh----------cCC---------CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQK----------YHY---------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK  235 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  235 (349)
                      ...+-..++.+.|++.|++...          ..+         ..|...|.-....+-..|+.+.|+.+|.....    
T Consensus       865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----  940 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----  940 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence            7777778888888888775321          111         12456666667777788888888888876642    


Q ss_pred             CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876          236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                           |.++++..|-.|+.++|-++-++-.      |......+.+.|-..|++.+|..+|.+..
T Consensus       941 -----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 -----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             -----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 5566777778888888877765432      44455567888888888888888877654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.55  E-value=7.8e-06  Score=57.82  Aligned_cols=97  Identities=10%  Similarity=-0.029  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      .....+...+...|++++|...++.+...+ +.+...+..+...+...|+++.|...++...+.+. .+...+..+...|
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence            334444455555566666666665555433 33445555555555556666666666655554432 2444555555566


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|...|+...+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666655554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.52  E-value=3.6e-05  Score=68.84  Aligned_cols=82  Identities=10%  Similarity=-0.074  Sum_probs=51.0

Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                      .|...+....+..- -+..+|+.|... ...|++.-|.-.|-.-.... +....+|..+...+.+..+++.|...+..++
T Consensus       801 ~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q  877 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ  877 (1238)
T ss_pred             HHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence            45555555554432 356667766555 55566666655554444332 2256677777777888888888888888777


Q ss_pred             HhHHh
Q 018876          336 KMDET  340 (349)
Q Consensus       336 ~~~~~  340 (349)
                      .+++.
T Consensus       878 SLdP~  882 (1238)
T KOG1127|consen  878 SLDPL  882 (1238)
T ss_pred             hcCch
Confidence            76654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.49  E-value=6e-05  Score=65.53  Aligned_cols=134  Identities=15%  Similarity=0.171  Sum_probs=77.2

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                      +.....++.+|+.+++.+....  .-..-|..+...|...|+++.|.++|-+.         ..++-.|..|.+.|+|+.
T Consensus       741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            3445566667777776666542  23334566667777777787777777542         234456677778888888


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE  297 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  297 (349)
                      |.++-.+..  |.......|..-..-.-+.|++.+|.+++-.+..    |+     ..|..|-+.|..+..+++.+
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence            777766543  3233445555555555666666666665533322    22     13444555555555555444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.47  E-value=3.6e-05  Score=55.04  Aligned_cols=125  Identities=17%  Similarity=0.139  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHH
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVR  246 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~  246 (349)
                      |..++..+ ..++...+...++.+.+....-.  ....-.+...+...|++++|...|+........|+  ......+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            33334333 35555555555555555432210  12222233455556666666666666655432221  122333455


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876          247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV  298 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  298 (349)
                      .+...|++++|...++......  ..+..+......|.+.|++++|...|+.
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5556666666666665533322  2344555556666666666666666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.46  E-value=0.00092  Score=59.56  Aligned_cols=222  Identities=16%  Similarity=0.121  Sum_probs=152.0

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      ..+++..|.+....+.+.  .|+.. |...+.+  +.+.|+.++|..+++.....+  ..|..+...+-.+|.+.+..++
T Consensus        21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhH
Confidence            467889999999988876  35543 3344444  668999999999998887664  3488899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-C---------HHH
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-Q---------IDT  151 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~  151 (349)
                      |..+|++....  .|+......+..+|.+.+++.+-.+.--++.+.- +-+...+=.+++.....- .         ..-
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            99999998876  5778888888899999988776555554444431 223333333333333211 1         223


Q ss_pred             HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876          152 MEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAVME-YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       152 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  229 (349)
                      |.+.++.+.+.+ ..-+..-.......+...|++++|..++. ..-+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            566666666554 21122222233344567889999999994 3434333445555567778888899999999999998


Q ss_pred             HhCC
Q 018876          230 RSER  233 (349)
Q Consensus       230 ~~~~  233 (349)
                      ...+
T Consensus       253 l~k~  256 (932)
T KOG2053|consen  253 LEKG  256 (932)
T ss_pred             HHhC
Confidence            8876

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.43  E-value=4.8e-07  Score=46.90  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD  307 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  307 (349)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688999999999999999999999999988887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.42  E-value=8.2e-06  Score=67.83  Aligned_cols=121  Identities=17%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876          201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC  278 (349)
Q Consensus       201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  278 (349)
                      .+......++..+....+.+.+..++.+.+..  ....-+.|..++++.|...|..+.+..+++.=...|+-||..++|.
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            35555666666666666666666666666543  1112223445677777777777777777766666677777777777


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN  321 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  321 (349)
                      |+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7777777777777777777666665555666655555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.41  E-value=0.00012  Score=63.76  Aligned_cols=137  Identities=18%  Similarity=0.274  Sum_probs=91.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP  254 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  254 (349)
                      +.+.....+|.+|+.+++.++....  -..-|..+.+.|...|+++.|.++|-+.         ..++-.|..|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            3445566777788888877776543  2445667778888888888888887643         2244556778888888


Q ss_pred             hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876          255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL  333 (349)
Q Consensus       255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  333 (349)
                      +.|.++-.+...  +......|-.-..-+-++|++.+|.+++-..   | .|+     ..|..|-+.|..+..+++.++
T Consensus       808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence            888777665543  3345556666666677788888887776332   2 234     246778888888877776553

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.40  E-value=5.8e-07  Score=46.21  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 018876          274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP  306 (349)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  306 (349)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            478888888888888888888888888888776

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.40  E-value=4.3e-05  Score=54.67  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch--HHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD--TVFFNC  278 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~  278 (349)
                      ..|..++..+ ..++...+...++.+.... +.+   ......+...+...|++++|...|+.+......++  ......
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4455555555 4788899999999988763 222   23444566888999999999999999998764333  234555


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL  333 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  333 (349)
                      +...+...|++++|+..++......  .....+......|.+.|++++|...|+.
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7888999999999999997754432  3556677888899999999999999875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.39  E-value=2.9e-05  Score=64.31  Aligned_cols=124  Identities=12%  Similarity=0.021  Sum_probs=75.2

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA  216 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (349)
                      ..++..+...++++.|.++++++.+..  |+  ....+++.+...++..+|.+++.+..+.... +...+..-...+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            344455555666777777777766653  33  2334556666666666677666666654322 555555556666667


Q ss_pred             CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      ++++.|..+.+++.... +-+..+|..|..+|...|+++.|+..++.+.-
T Consensus       248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            77777777777666542 33345666677777777777777766665543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.39  E-value=0.0014  Score=58.44  Aligned_cols=225  Identities=9%  Similarity=0.032  Sum_probs=154.1

Q ss_pred             HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF  114 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (349)
                      ....+++..|+....++.+.   .|+.. |..++.+  +.+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus        19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence            34678899999999998887   45543 3333333  45889999999999988777644 888999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------H
Q 018876          115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------F  184 (349)
Q Consensus       115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~  184 (349)
                      ++|..+|++..+.  .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+-.+++.....-.          .
T Consensus        94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            9999999999866  667777888888999999887755555555443 33344444455554443211          2


Q ss_pred             HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018876          185 EKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRL-MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR  262 (349)
Q Consensus       185 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  262 (349)
                      .-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++..
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            34556666665544 111222223333445678899999999943 3333334444555566777888888888888888


Q ss_pred             HHhhCCC
Q 018876          263 FIDNSDI  269 (349)
Q Consensus       263 ~~~~~~~  269 (349)
                      ++...+.
T Consensus       251 ~Ll~k~~  257 (932)
T KOG2053|consen  251 RLLEKGN  257 (932)
T ss_pred             HHHHhCC
Confidence            8877764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.38  E-value=2.9e-05  Score=64.32  Aligned_cols=126  Identities=11%  Similarity=0.087  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG  179 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (349)
                      ....|+..+...++++.|..+++++.+..  |+  ....+++.+...++-.+|.+++++..+.. +.+......-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34456667777789999999999998764  44  34457778878888888999998888653 446777777778888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      +.++.+.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+.-
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            999999999999999887533 677999999999999999999988887653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.32  E-value=1.7e-05  Score=66.07  Aligned_cols=124  Identities=16%  Similarity=0.115  Sum_probs=98.1

Q ss_pred             CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018876           93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT  170 (349)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (349)
                      +.+.+......+++.+....+.+.+..++.+....  ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            45667778888888888888888888888888765  2223345667889999999999999999888888899999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA  216 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (349)
                      ++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999988887666555667776666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.31  E-value=1.5e-06  Score=45.02  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN   97 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   97 (349)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.29  E-value=1.6e-06  Score=44.49  Aligned_cols=32  Identities=38%  Similarity=0.692  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRP   96 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (349)
                      +|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.24  E-value=0.00071  Score=61.05  Aligned_cols=218  Identities=11%  Similarity=0.012  Sum_probs=147.4

Q ss_pred             chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876          113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME  192 (349)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  192 (349)
                      +...++..|-+..+.. +.-...|..|...|+..-+...|.+.|.+..+.. ..+..........|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            3666666666655443 2224578888888888888889999999988875 3377788889999999999999998843


Q ss_pred             HHHhcCC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018876          193 YMQKYHY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML  271 (349)
Q Consensus       193 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  271 (349)
                      ..-+... ..-...|....-.|...++...|..-|+...... +.|...|..+.++|.+.|++..|.++|.++....+. 
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-  628 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-  628 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence            3322211 1112223334445677888899999998887655 567788999999999999999999999988875432 


Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876          272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR------GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV  334 (349)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  334 (349)
                      +...--......+..|.+.+|...+......      +..--..++......+...|-...|..+++.-
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks  697 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS  697 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            2222222333456789999999888877643      11222344555555555556655666555543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.23  E-value=2.8e-05  Score=50.83  Aligned_cols=74  Identities=20%  Similarity=0.418  Sum_probs=37.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccC--------chHHHHHHHHHHhccCCCcchhhHHHHH
Q 018876           70 IKSCLKAFAFDKVQALLSDMSTQGI-RPNTVTYNTLIDAYGRAK--------MFAEMELTLVKMLSEDCEPDVWTMNCTL  140 (349)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~  140 (349)
                      |..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        ..-..+.+|+.|...+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            4444444666666666666666666 566666666665554431        1223344444444444444444444444


Q ss_pred             HHH
Q 018876          141 RAF  143 (349)
Q Consensus       141 ~~~  143 (349)
                      ..+
T Consensus       112 ~~L  114 (120)
T PF08579_consen  112 GSL  114 (120)
T ss_pred             HHH
Confidence            443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.20  E-value=3.3e-05  Score=50.47  Aligned_cols=76  Identities=9%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCC-CchHHHHHHHHHHHHccC--------ChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNSDI-MLDTVFFNCLVDAYGRLK--------CFAEMKGVLEVMQQRGCKPDKVTYRTMV  315 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~  315 (349)
                      |..|...+++...-.+|+.+++.++ .|+..+|+.++.+.++..        +.-..+.+|++|...+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3444445666666666666666666 566666666666655432        2345677788888888888888888888


Q ss_pred             HHHHc
Q 018876          316 RAYST  320 (349)
Q Consensus       316 ~~~~~  320 (349)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            77654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.13  E-value=0.00028  Score=56.55  Aligned_cols=129  Identities=11%  Similarity=0.075  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF  213 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (349)
                      +|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|..+|+...+. +..+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34444444444444555555555544322 1122223222222 11233344455555544443 222444444444544


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          214 GRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      ...++.+.|..+|++.... +.++.   ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555544432 11111   2444444444444444444444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.11  E-value=0.00013  Score=50.07  Aligned_cols=99  Identities=7%  Similarity=-0.027  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CchHHHHHHH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP-DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR--PNTVTYNTLI  105 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~  105 (349)
                      ++..+...+.+.|++++|.+.|+.+....+-.+ ....+..+..++.+.|+++.|...++.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344455555556666666666665554321001 1234444555555566666666666655543111  1123444455


Q ss_pred             HHHhccCchHHHHHHHHHHhcc
Q 018876          106 DAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      .++.+.|+.++|.+.++++...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5555555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.11  E-value=8.7e-05  Score=48.45  Aligned_cols=94  Identities=18%  Similarity=0.167  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 018876           30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG  109 (349)
Q Consensus        30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  109 (349)
                      +..+...+...|++++|...++...+..  +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            4455556666777777777777666542  2334555666666666677777777776666553 223345556666666


Q ss_pred             ccCchHHHHHHHHHHhc
Q 018876          110 RAKMFAEMELTLVKMLS  126 (349)
Q Consensus       110 ~~~~~~~a~~~~~~~~~  126 (349)
                      ..|+++.|...+....+
T Consensus        80 ~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          80 KLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHhHHHHHHHHHHHHc
Confidence            66666666666666553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.08  E-value=1.2e-05  Score=51.44  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             CCChHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCD-ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      .|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.+++. .+..  +.+....-.+..++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence            46777777777777765321 1344455567777777777777777766 2221  223344445566777777777777


Q ss_pred             HHHHH
Q 018876           84 ALLSD   88 (349)
Q Consensus        84 ~~~~~   88 (349)
                      +.+++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.07  E-value=0.00025  Score=56.78  Aligned_cols=129  Identities=9%  Similarity=0.039  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY  178 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (349)
                      +|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45556666666666666666666665432 2223333333333 22244555566666666554 344556666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      .+.++.+.|..+|+..... +.++   ...|...+..-.+.|+.+.+..+.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666544 2211   23666666666666666666666666654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.07  E-value=6.8e-06  Score=41.06  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGC  304 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  304 (349)
                      +|+.++.+|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            577777777777777777777777777653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.06  E-value=0.0004  Score=47.69  Aligned_cols=22  Identities=14%  Similarity=0.247  Sum_probs=9.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 018876          174 LLDSYGKAGHFEKMSAVMEYMQ  195 (349)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~  195 (349)
                      +..++.+.|+++.|...++.+.
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHHH
Confidence            3333444444444444444333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.05  E-value=0.00015  Score=47.29  Aligned_cols=86  Identities=17%  Similarity=0.075  Sum_probs=33.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876          212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE  291 (349)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  291 (349)
                      .+...|++++|...++.+.+.. +.+...+..+...+...++++.|...++....... .+..++..+...+...|+++.
T Consensus         9 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   86 (100)
T cd00189           9 LYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEE   86 (100)
T ss_pred             HHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHH
Confidence            3333444444444444433321 11223333333344444444444444444333221 122333344444444444444


Q ss_pred             HHHHHHHH
Q 018876          292 MKGVLEVM  299 (349)
Q Consensus       292 a~~~~~~~  299 (349)
                      |...+...
T Consensus        87 a~~~~~~~   94 (100)
T cd00189          87 ALEAYEKA   94 (100)
T ss_pred             HHHHHHHH
Confidence            44444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=0.00029  Score=58.53  Aligned_cols=86  Identities=12%  Similarity=-0.080  Sum_probs=39.6

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876          215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG  294 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  294 (349)
                      ..|++++|+.+|+++++.. +.+...|..+..++...|++++|...++.+..... .+...|..+..+|...|++++|..
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4444455555554444432 22334444444444455555555555544444332 133444444444555555555555


Q ss_pred             HHHHHHhc
Q 018876          295 VLEVMQQR  302 (349)
Q Consensus       295 ~~~~~~~~  302 (349)
                      .|++....
T Consensus        92 ~~~~al~l   99 (356)
T PLN03088         92 ALEKGASL   99 (356)
T ss_pred             HHHHHHHh
Confidence            55544443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.01  E-value=0.00034  Score=49.44  Aligned_cols=98  Identities=9%  Similarity=-0.109  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      ....-.+..-+...|++++|..+|+.+.... +-+..-|..|..++...|++++|+..|......++ -|+..+-.+..+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence            3344445555667788888888888776554 34556667777777778888888888888777664 367777777888


Q ss_pred             HHccCChHHHHHHHHHHHhc
Q 018876          283 YGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +...|+.+.|.+.|+..+..
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888776654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.01  E-value=0.00016  Score=60.04  Aligned_cols=86  Identities=15%  Similarity=0.142  Sum_probs=58.1

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      ..|++++|++.|++..+.. +.+...|..+..+|...|++++|+..++.+....  +.+...|..+..++...|++++|.
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHHH
Confidence            4567777777777777653 3456666666677777777777777777776653  345566666677777777777777


Q ss_pred             HHHHHHHhC
Q 018876           84 ALLSDMSTQ   92 (349)
Q Consensus        84 ~~~~~~~~~   92 (349)
                      ..|++..+.
T Consensus        91 ~~~~~al~l   99 (356)
T PLN03088         91 AALEKGASL   99 (356)
T ss_pred             HHHHHHHHh
Confidence            777776665

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.00  E-value=0.00013  Score=54.08  Aligned_cols=103  Identities=18%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             CchHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018876          201 WTIVTYNIVIDAFGR-----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF  275 (349)
Q Consensus       201 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  275 (349)
                      .+..+|..++..|.+     .|+.+=....++.|.+-|+.-|..+|+.|+..+=+ |.+-               |. ..
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~  107 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NF  107 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cH
Confidence            366777777777653     34555566666677777777777777777766543 2211               00 01


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG  322 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  322 (349)
                      +..+...|-  .+.+-|++++++|...|+-||..++..++..+.+.+
T Consensus       108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            111111111  233557788888888888888888888888876655

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.99  E-value=0.00081  Score=49.70  Aligned_cols=87  Identities=9%  Similarity=-0.020  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      ..+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            3455555556666666666666666654432221  2455555666666666666666666655432 223344444555


Q ss_pred             HHHhcCChhh
Q 018876          247 AYGHAGKPEK  256 (349)
Q Consensus       247 ~~~~~~~~~~  256 (349)
                      .+...|+...
T Consensus       115 ~~~~~g~~~~  124 (172)
T PRK02603        115 IYHKRGEKAE  124 (172)
T ss_pred             HHHHcCChHh
Confidence            5555555433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.99  E-value=3.8e-05  Score=49.06  Aligned_cols=20  Identities=20%  Similarity=0.443  Sum_probs=8.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q 018876          174 LLDSYGKAGHFEKMSAVMEY  193 (349)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~  193 (349)
                      +..++.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            33444444444444444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.99  E-value=0.00044  Score=48.89  Aligned_cols=98  Identities=7%  Similarity=-0.002  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018876          168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA  247 (349)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  247 (349)
                      ......+...+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|++.|....... +-++..+-.+..+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            334445555667788888888888888776543 66777777777888888888888888877665 4566777778888


Q ss_pred             HHhcCChhhHHHHHHHHhhC
Q 018876          248 YGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~~  267 (349)
                      +...|+.+.|.+.|+..+..
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.97  E-value=0.0047  Score=48.28  Aligned_cols=177  Identities=12%  Similarity=0.128  Sum_probs=101.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876          139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF---NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR  215 (349)
Q Consensus       139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (349)
                      ....+...|++++|.+.|+.+...-.. +....   -.+..++.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            344455677888888888887765322 22222   34556677788888888888777766543333333333333321


Q ss_pred             --c---------------CC---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018876          216 --A---------------GD---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF  275 (349)
Q Consensus       216 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  275 (349)
                        .               .+   ...|...|+.+++               -|-.+.-..+|...+..+...   .-..-
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la~~e  178 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LAKYE  178 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HHHHH
Confidence              1               01   1233344444433               222222334444444333321   01111


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                       -.+.+-|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|......+.
T Consensus       179 -~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        179 -LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             -HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence             14667788899999999888888876  333345667788889999999999888776553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.96  E-value=0.0013  Score=52.93  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             HHHHHHHHHcc-CCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----Cch
Q 018876          136 MNCTLRAFGNS-GQIDTMEKCYEKFQSA----GIQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTI  203 (349)
Q Consensus       136 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~  203 (349)
                      +..+...|... |+++.|.+.|++..+.    + .+  -..++..+...+.+.|++++|..+|+++......     .+.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            34444555565 7777777777765442    2 11  1334556667777888888888888777554221     112


Q ss_pred             H-HHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--cHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          204 V-TYNIVIDAFGRAGDLKQMEYLFRLMRSER--IKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       204 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      . .+-..+-++...|++..|...+++.....  ...  .......|+.++ ..|+.+.....+...
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~  260 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY  260 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            1 22223334555678888888888776442  111  234455566655 445544444444333

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.95  E-value=1.6e-05  Score=39.66  Aligned_cols=26  Identities=12%  Similarity=0.397  Sum_probs=10.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      |+.++++|++.|++++|.++|++|.+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            33344444444444444444444333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.95  E-value=0.0011  Score=49.06  Aligned_cols=61  Identities=10%  Similarity=-0.055  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCchHHHHHHHHHHhc
Q 018876           66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLS  126 (349)
Q Consensus        66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  126 (349)
                      +..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++...
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444444444444444443321111  23344444444444555555554444443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.94  E-value=0.0093  Score=50.54  Aligned_cols=156  Identities=6%  Similarity=0.035  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      ..+|..+++...+..-.+.|..+|.+..+.+..+ ++...++++..+|. ++..-|..+|+.-... ..-++.-....+.
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld  443 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD  443 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence            3456777888888888999999999999887766 77788888888765 6788999999876543 2233455567778


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCch--HHHHHHHHHHHHccCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHcc
Q 018876          247 AYGHAGKPEKLGSVLRFIDNSDIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG---CKPDKVTYRTMVRAYSTN  321 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~  321 (349)
                      -+...++-..+..+|+++...+..++  ...|..++..-..-|+...+.++-+++...=   ..+....-..+++-|.-.
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~  523 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL  523 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence            88899999999999999988855443  5789999999999999999999988876541   222223344555555555


Q ss_pred             Cchh
Q 018876          322 GMKN  325 (349)
Q Consensus       322 g~~~  325 (349)
                      +...
T Consensus       524 d~~~  527 (656)
T KOG1914|consen  524 DLYP  527 (656)
T ss_pred             cccc
Confidence            5443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.92  E-value=2.5e-05  Score=47.56  Aligned_cols=62  Identities=27%  Similarity=0.397  Sum_probs=42.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL   69 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   69 (349)
                      +.|++++|+++|+.+.+.. |.+..++..+..+|.+.|++++|.++++.+...   .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            4677788888888777663 446677777777788888888888888777765   4554444333

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.0016  Score=50.98  Aligned_cols=117  Identities=14%  Similarity=0.046  Sum_probs=90.2

Q ss_pred             HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc
Q 018876          195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML  271 (349)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~  271 (349)
                      ...++. |...|-.|...|...|+...|..-|.+..+.. .++...+..+..++..+.+   ..++..+++++...+. -
T Consensus       149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~  225 (287)
T COG4235         149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-A  225 (287)
T ss_pred             HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-c
Confidence            334433 88999999999999999999999999887654 5566777777777665543   5578889999988764 4


Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                      |+.+...|...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            78888888889999999999999999999873  34444555554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.88  E-value=0.0021  Score=56.09  Aligned_cols=143  Identities=9%  Similarity=-0.051  Sum_probs=95.9

Q ss_pred             CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 018876          164 IQPSINTFNILLDSYGKAG-----HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--------DLKQMEYLFRLMR  230 (349)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~  230 (349)
                      .+.+...|..++++.....     +...|..+|++..+..+. ....|..+..++....        ++..+.+......
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4567788888888755432     377899999999887533 3455555444332221        1223333344333


Q ss_pred             hC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH
Q 018876          231 SE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV  309 (349)
Q Consensus       231 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  309 (349)
                      .. ..+.+...+..+.-.....|++++|...++++.+.+  |+...|..+...+...|+.++|.+.+++....  .|...
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence            32 123455667777666667899999999999998876  57788999999999999999999999988876  34444


Q ss_pred             HH
Q 018876          310 TY  311 (349)
Q Consensus       310 ~~  311 (349)
                      +|
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            43

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.86  E-value=0.0006  Score=50.18  Aligned_cols=62  Identities=6%  Similarity=-0.133  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      .+..+...+...|++++|...|+........+  ...++..+...+...|++++|...++....
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444445555555555555554332111  123444455555555555555555555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.86  E-value=0.00038  Score=51.69  Aligned_cols=115  Identities=18%  Similarity=0.274  Sum_probs=79.7

Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHH
Q 018876           47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL  121 (349)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  121 (349)
                      ...|+.....   ..+-.+|..++..+.+.     |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|
T Consensus        34 ~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f  108 (228)
T PF06239_consen   34 EELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF  108 (228)
T ss_pred             HHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence            3445544322   46777888888877754     5667777788889999999999999999988865 3331 11122


Q ss_pred             HHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018876          122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH  183 (349)
Q Consensus       122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (349)
                      +.+.               .-  .-.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus       109 Q~~F---------------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  109 QAEF---------------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHh---------------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            2221               11  123456688899999999999999999999998877665

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.85  E-value=0.001  Score=48.99  Aligned_cols=81  Identities=10%  Similarity=-0.085  Sum_probs=42.1

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876          133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI  210 (349)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  210 (349)
                      ...+..+...+...|++++|...|.+.......+  ...++..+...+...|++++|...++........ ...++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence            3344455555555666666666666655442221  1235555666666666666666666666554321 233344444


Q ss_pred             HHHH
Q 018876          211 DAFG  214 (349)
Q Consensus       211 ~~~~  214 (349)
                      ..+.
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            4444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.00042  Score=53.86  Aligned_cols=98  Identities=14%  Similarity=0.039  Sum_probs=73.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  255 (349)
                      +-+.+.+++++|+..|.+..+..+. |.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence            3456778888888888888887644 77777888888888888888888777776654 334577888888888888888


Q ss_pred             hHHHHHHHHhhCCCCchHHHHH
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFN  277 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~  277 (349)
                      +|.+.|++..+..  |+-.+|-
T Consensus       167 ~A~~aykKaLeld--P~Ne~~K  186 (304)
T KOG0553|consen  167 EAIEAYKKALELD--PDNESYK  186 (304)
T ss_pred             HHHHHHHhhhccC--CCcHHHH
Confidence            8888888887754  4444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.01  Score=48.60  Aligned_cols=87  Identities=10%  Similarity=-0.100  Sum_probs=38.4

Q ss_pred             hcCChHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876          215 RAGDLKQMEYLFRLMRSE---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE  291 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  291 (349)
                      +.|++..|.+.|.+.+..   ++.|+...|.....+..+.|+..+|+.-.+...+.+.. -...|..-..++...++|++
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555432   22333444444444555555555555555554443210 01112222223333445555


Q ss_pred             HHHHHHHHHhc
Q 018876          292 MKGVLEVMQQR  302 (349)
Q Consensus       292 a~~~~~~~~~~  302 (349)
                      |.+-++...+.
T Consensus       340 AV~d~~~a~q~  350 (486)
T KOG0550|consen  340 AVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHhh
Confidence            55555544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=0.0079  Score=48.45  Aligned_cols=150  Identities=13%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CC-CCchHHHHHHH
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKY----HY-SWTIVTYNIVI  210 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~  210 (349)
                      ...+..|...|++..|-+.+..+               ...|... |+++.|...|++..+.    +. ..-...+..+.
T Consensus        98 ~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A  162 (282)
T PF14938_consen   98 EKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA  162 (282)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence            33445556666666655554443               3344444 6777777777665432    20 11234566677


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCC-----CcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCC--C--CchHHHHHHHH
Q 018876          211 DAFGRAGDLKQMEYLFRLMRSERIK-----PSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSD--I--MLDTVFFNCLV  280 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li  280 (349)
                      ..+.+.|++++|.++|++.......     .+. ..+...+-++...||+..|...++......  +  .........|+
T Consensus       163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~  242 (282)
T PF14938_consen  163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL  242 (282)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence            7788888888888888887654221     122 123334446667788888888888876542  2  12244556666


Q ss_pred             HHHHc--cCChHHHHHHHHHHHh
Q 018876          281 DAYGR--LKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       281 ~~~~~--~g~~~~a~~~~~~~~~  301 (349)
                      .++-.  ...+..+..-|+.+.+
T Consensus       243 ~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  243 EAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHhCCHHHHHHHHHHHcccCc
Confidence            66654  2345555555555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.79  E-value=0.01  Score=46.41  Aligned_cols=180  Identities=10%  Similarity=0.058  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH---HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876           66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY---NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA  142 (349)
Q Consensus        66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  142 (349)
                      +-.....+...|++++|.+.|+.+...-.. +....   -.+..++.+.+++++|...+++..+........-+...+.+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            333455556778888888888888776322 22222   34567778888888888888888766322222233333333


Q ss_pred             HHc--c---------------CC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 018876          143 FGN--S---------------GQ---IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT  202 (349)
Q Consensus       143 ~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  202 (349)
                      .+.  .               .+   ...|.+.|+.+++.  -|+             +.-..+|...+..+...-    
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~l----  174 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRL----  174 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHH----
Confidence            221  1               11   12344555555543  222             222344444333332210    


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                      ...--.+...|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|......+.
T Consensus       175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            111114556677788888888877777754  333445666677788888888888877766554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.79  E-value=0.00017  Score=43.98  Aligned_cols=65  Identities=18%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-chhhhHHHHHHHHHhH
Q 018876          273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG-MKNHAKEFQDLVEKMD  338 (349)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~  338 (349)
                      ...|..+...+...|++++|+..|++..+.+.. +...|..+..+|...| ++++|.+.++...+++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            445666666666666666666666666665322 4555666666666666 5666666666655543

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.74  E-value=0.003  Score=55.11  Aligned_cols=139  Identities=10%  Similarity=-0.007  Sum_probs=98.5

Q ss_pred             CCCCchHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcC--------ChhhHHHHHHH
Q 018876          198 HYSWTIVTYNIVIDAFGRA-----GDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAG--------KPEKLGSVLRF  263 (349)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~  263 (349)
                      ..+.+...|...+++....     ++...|..+|++..+..  |+ ...+..+..++....        +...+.+....
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3456788999998875432     23678999999998764  44 344444433332221        12333444444


Q ss_pred             HhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          264 IDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       264 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .... ....++..|..+.......|++++|...+++....+  |+...|..+...+...|+.++|.+.++...++++.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3332 123456788888777778899999999999999885  68889999999999999999999999998887764

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.0011  Score=51.55  Aligned_cols=151  Identities=11%  Similarity=0.076  Sum_probs=106.8

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 018876          141 RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK  220 (349)
Q Consensus       141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  220 (349)
                      .-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+.....+.. ...+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            34678899999999999999974 448888899999999999999999999888887643 6789999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHH-HhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHH-HccCChHHHHHH
Q 018876          221 QMEYLFRLMRSERIKPSCVTLCSLVRAY-GHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFAEMKGV  295 (349)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~  295 (349)
                      +|.+.|++.++.  .|+..+|-.=+... .+.+...   .+..-++.....|..|+...      .+ ............
T Consensus       167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s------~~~~~l~nnp~l~~~  238 (304)
T KOG0553|consen  167 EAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS------MFNGDLMNNPQLMQL  238 (304)
T ss_pred             HHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh------hhccccccCHHHHHH
Confidence            999999998764  67766665544332 2333333   33334444444444344332      22 233334455566


Q ss_pred             HHHHHh
Q 018876          296 LEVMQQ  301 (349)
Q Consensus       296 ~~~~~~  301 (349)
                      ...|..
T Consensus       239 ~~~m~~  244 (304)
T KOG0553|consen  239 ASQMMK  244 (304)
T ss_pred             HHHHhh
Confidence            666666

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=0.027  Score=49.49  Aligned_cols=265  Identities=12%  Similarity=0.106  Sum_probs=124.9

Q ss_pred             HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876           34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM  113 (349)
Q Consensus        34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (349)
                      +....+.|++-+..++++.-........-..+|+.+...+.....+++|.+.+..-...         ...+.++.+...
T Consensus       767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~  837 (1189)
T KOG2041|consen  767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL  837 (1189)
T ss_pred             HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence            34444555555555554332111110112345666666666666666666655432211         234455555555


Q ss_pred             hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018876          114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY  193 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  193 (349)
                      +++.+.+.+.+     +-+....-.+..++.+.|.-++|.+.+-+.   +. |     ...+..|...+++.+|.++-+.
T Consensus       838 f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  838 FGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             hhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence            55555444443     334445556667777777777776655332   21 1     1234556666777777666544


Q ss_pred             HHhcCCCCchHHH--------------HHHHHHHHhcCChHHHHHHHHHHHh----CCCCCcHHHHHHHHHHH-------
Q 018876          194 MQKYHYSWTIVTY--------------NIVIDAFGRAGDLKQMEYLFRLMRS----ERIKPSCVTLCSLVRAY-------  248 (349)
Q Consensus       194 ~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~-------  248 (349)
                      ..-    |.+.+.              .--|..+.+.|+.-.|-+++.+|.+    ++.++-..--.-++.++       
T Consensus       904 ~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~  979 (1189)
T KOG2041|consen  904 FQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQ  979 (1189)
T ss_pred             ccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            321    111111              1123334455655566666666643    23332211111111111       


Q ss_pred             --------HhcCChhhHHHHHHHHhhC-------CCC--chHHHHHHHHHHHHccCChHHHHHHHHHHHhc-CCCCCHHH
Q 018876          249 --------GHAGKPEKLGSVLRFIDNS-------DIM--LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-GCKPDKVT  310 (349)
Q Consensus       249 --------~~~~~~~~a~~~~~~~~~~-------~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~  310 (349)
                              -..|..++|..+++...-.       +.-  .....|-.|..-....|..+.|++.--.+.+. .+-|....
T Consensus       980 ~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~ei 1059 (1189)
T KOG2041|consen  980 TIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEI 1059 (1189)
T ss_pred             HHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHH
Confidence                    1235555555544332110       000  12233344444456678888888765544443 34566666


Q ss_pred             HHHHHHHHHccCchh
Q 018876          311 YRTMVRAYSTNGMKN  325 (349)
Q Consensus       311 ~~~l~~~~~~~g~~~  325 (349)
                      |..+.-+-+....+.
T Consensus      1060 ySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1060 YSLLALAACAVRAFG 1074 (1189)
T ss_pred             HHHHHHHHhhhhhhh
Confidence            766655444443333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.68  E-value=0.00015  Score=44.10  Aligned_cols=52  Identities=25%  Similarity=0.380  Sum_probs=31.7

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      +.|++++|+++|+.+....  +-+...+..+..++.+.|++++|..+++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566666666666665542  335555666666666666666666666666655

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.014  Score=44.88  Aligned_cols=140  Identities=13%  Similarity=-0.052  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-----H
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-----L  244 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l  244 (349)
                      ..+.++..+...|.+.-...++.+..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+++.     .
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34566777777888989999999998887777889999999999999999999999997765432333333333     3


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR  312 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  312 (349)
                      ...+.-++++..|...+.++...+.. ++...|.-.-+..-.|+...|.+.++.|...  .|.+.+-+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            34456677888888889888876643 6666666666666778999999999999987  34444444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.67  E-value=0.0071  Score=41.19  Aligned_cols=89  Identities=16%  Similarity=0.008  Sum_probs=40.5

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHHHHHHccC
Q 018876          212 AFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g  287 (349)
                      ++-..|+.++|+.+|++..+.|....  ...+..+...+...|++++|..+++......+.  .+......+..++...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            34445555555555555555443332  223344445555555555555555555433111  01111222233445555


Q ss_pred             ChHHHHHHHHHHH
Q 018876          288 CFAEMKGVLEVMQ  300 (349)
Q Consensus       288 ~~~~a~~~~~~~~  300 (349)
                      +.++|+..+-...
T Consensus        90 r~~eAl~~~l~~l  102 (120)
T PF12688_consen   90 RPKEALEWLLEAL  102 (120)
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555544433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.66  E-value=0.00043  Score=41.58  Aligned_cols=56  Identities=13%  Similarity=-0.013  Sum_probs=28.3

Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ..+...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444555555555555555554422 4445555555555555555555555555443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.65  E-value=0.0035  Score=42.65  Aligned_cols=51  Identities=24%  Similarity=0.373  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018876            5 CKQPEKAHELFQAMVDEGCDAN--TQSFTALLSAYGRSGLFDKAFSLLEHMKN   55 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   55 (349)
                      .|+.++|+.+|++....|....  ...+-.+...+...|++++|..+++....
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555555555544443322  22333444444455555555555554443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.02  Score=46.94  Aligned_cols=259  Identities=9%  Similarity=-0.047  Sum_probs=152.1

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876           71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID  150 (349)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (349)
                      ..+.+..++..|+..+...++.... +..-|..-+..+...++++++.--.++-.+.. +-........-+++...++..
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence            3455666777777777777776432 44455555555556666666665555444321 001111122222222223333


Q ss_pred             HHHHHHH---------------HHHhcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH-
Q 018876          151 TMEKCYE---------------KFQSAGI-QPSINTFNIL-LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA-  212 (349)
Q Consensus       151 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-  212 (349)
                      +|.+.++               .+..... +|.-.++..+ ..++.-.|+.++|...--.+.+..   ....+...+++ 
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~  211 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL  211 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence            3322222               1111111 2333333332 245567788888888877776654   22333334433 


Q ss_pred             -HHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-------------HHHHHHhcCChhhHHHHHHHHhhC---CCCchHHH
Q 018876          213 -FGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-------------LVRAYGHAGKPEKLGSVLRFIDNS---DIMLDTVF  275 (349)
Q Consensus       213 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~  275 (349)
                       +...++.+.+...|++.+..+  |+...-..             =..-..+.|++..|.+.+.+.+..   +..|+...
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence             335677888888888876543  44322211             122345789999999999988764   44567778


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRT---MVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      |.....+..+.|+..+|+.--++....    |......   -..++...++|++|.+-++...+.+.+
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            888888899999999999988888765    4433333   334567778999999988887776655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.60  E-value=0.00037  Score=41.90  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=52.2

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      +...+...|++++|...|+++.+.... +...+..+..++...|++++|...++.+.+..+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            567789999999999999999998532 7888999999999999999999999998876653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.011  Score=45.45  Aligned_cols=133  Identities=6%  Similarity=-0.110  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH-----
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT-----  139 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----  139 (349)
                      ..+.++.++...+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-+.+..+.+.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344555666666666666666666666554555666666666666667777777766665544333333333332     


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                      ...|.-.+++-.|...+.++.... +.|....|.-.-+..-.|+..+|.+.++.|.+..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            233455566666666666665543 2244444443334444567777777777776654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.55  E-value=0.016  Score=42.10  Aligned_cols=126  Identities=12%  Similarity=0.100  Sum_probs=70.2

Q ss_pred             CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHH
Q 018876           95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTF  171 (349)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~  171 (349)
                      .|+...-..|..++.+.|+..+|...|++....-.--|....-.+.++....+++..|...++.+.+..   -.||  +.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            455555556666666666666666666666654444455555566666666666666666666665542   1222  23


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 018876          172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY  224 (349)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  224 (349)
                      -.+.+.+...|....|..-|+.....-  |+...-......+.+.|+.+++..
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence            344556666666666666666666543  233322223334455555544443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.01  Score=46.59  Aligned_cols=101  Identities=12%  Similarity=0.067  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---CchHHHHHHHHHHhccCCCcchhhH
Q 018876           60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA---KMFAEMELTLVKMLSEDCEPDVWTM  136 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~  136 (349)
                      +-|...|-.|...|...|+.+.|...|....+.. +++...+..+..++...   .+..++..+++++.... +-++...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            3455555555555555555555555555555442 22444444444333222   12345555555555443 3344444


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      ..+...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            44555555555555555555555554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.50  E-value=0.038  Score=45.06  Aligned_cols=106  Identities=16%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG  284 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  284 (349)
                      +.+..+.-+...|+...|..+-.+..    .|+...|...+.+++..+++++..++...   .   -++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence            33444455555666666666655442    45666666666666666666655554321   1   12345566666666


Q ss_pred             ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876          285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  330 (349)
                      +.|+..+|..+...+     +     +..-+..|.+.|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence            666666666655441     1     12334455555665555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.49  E-value=0.002  Score=52.56  Aligned_cols=263  Identities=13%  Similarity=0.006  Sum_probs=149.7

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHcCCChhHHHHHHHHhh----cCCCCCCCHHHHHHHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANT----QSFTALLSAYGRSGLFDKAFSLLEHMK----NTPDCQPDVNTYSILIKSC   73 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~   73 (349)
                      +|+.|+....+.+|+...+.| ..|.    ..|..|..+|.-.+++++|++....=.    ..+.-.-...+...|...+
T Consensus        27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl  105 (639)
T KOG1130|consen   27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL  105 (639)
T ss_pred             HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence            578899999999999999887 3333    346666777777788888887643210    0000011122223344445


Q ss_pred             HhcCChhHHHHHHHH----HHhCCCC-CchHHHHHHHHHHhccCc--------------------hHHHHHHHHHHhc--
Q 018876           74 LKAFAFDKVQALLSD----MSTQGIR-PNTVTYNTLIDAYGRAKM--------------------FAEMELTLVKMLS--  126 (349)
Q Consensus        74 ~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~--  126 (349)
                      --.|.+++|.-.-.+    ..+.|-. .....+..+...|...|+                    ++.|.++|.+-.+  
T Consensus       106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~  185 (639)
T KOG1130|consen  106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS  185 (639)
T ss_pred             hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666543222    1222211 123344556666655442                    3344444433221  


Q ss_pred             --cCC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 018876          127 --EDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ----SAGIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK--  196 (349)
Q Consensus       127 --~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--  196 (349)
                        .|- -.-...|..+...|.-.|+++.|+...+.-.    +-|-. .....+..+.+++.-.|+++.|.+.++....  
T Consensus       186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence              110 1112345556666677788888877654422    22211 2344677788888888999999888876532  


Q ss_pred             --cCC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          197 --YHY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       197 --~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                        .|- .....+.-.|...|.-..++++|+.++.+-...     ...-....+.++..++...|..++|+.+.+...
T Consensus       266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence              221 123445556677777777788888877653221     112344677788888888888888887766543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.46  E-value=0.029  Score=42.73  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=10.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      ...|.+.|.+..|..-++.+++
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~  169 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIE  169 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHH
Confidence            3444555555555555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.45  E-value=0.00086  Score=40.81  Aligned_cols=60  Identities=18%  Similarity=0.058  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC-ChHHHHHHHHHHH
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK-CFAEMKGVLEVMQ  300 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~  300 (349)
                      +|..+...+...|++++|+..|++..+..+ -+...|..+..+|...| ++++|.+.++...
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            333444444444444444444444444332 13334444444444444 3444444444433

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.45  E-value=0.03  Score=42.65  Aligned_cols=178  Identities=15%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 018876          140 LRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG  217 (349)
Q Consensus       140 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  217 (349)
                      ...+...|++.+|.+.|+.+...-.  +-.....-.++.++.+.|+++.|...++...+..+.-....+...+.+.+...
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence            3444566777777777777665421  11233344556667777777777777777665543222222222222222111


Q ss_pred             ChHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876          218 DLKQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG  294 (349)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  294 (349)
                      ......     .......   --...+..++.-|-.+.-..+|...+..+.+.   .-..- -.+...|.+.|.+..|..
T Consensus        92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~aA~~  162 (203)
T PF13525_consen   92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKAAII  162 (203)
T ss_dssp             HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHHHHH
T ss_pred             hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHHHHH
Confidence            111110     0000000   00123344444444455555565555544432   11111 235677888888888888


Q ss_pred             HHHHHHhcCCCCC----HHHHHHHHHHHHccCchhhhH
Q 018876          295 VLEVMQQRGCKPD----KVTYRTMVRAYSTNGMKNHAK  328 (349)
Q Consensus       295 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~  328 (349)
                      -++.+++.  -|+    ......++.+|.+.|..+.+.
T Consensus       163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            88888876  233    345567777888888777443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.39  E-value=0.0062  Score=49.82  Aligned_cols=134  Identities=13%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHh----hCCC-CchHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMR----SERIK-PSCVTLCSLVRAYGHAGKPEKLGSVLRFID----NSDI-MLDTV  274 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~  274 (349)
                      .|..|...|.-.|+++.|+...+.-.    +-|-+ .....+..+..++.-.|+++.|.+.++...    +.|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34444444445566666665443221    11211 122445566666666677777766665432    2111 12233


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      +..+|...|.-..+++.|+.++.+-...     +..-....+.+|..+|...|..++|..+.+...+..
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            4445666666666666666665443211     112245566677777777777777777666555543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.35  E-value=0.01  Score=40.81  Aligned_cols=97  Identities=13%  Similarity=0.190  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      ..++..++.++++.|+.+....+++..-  |+.++...         ..+.         .-......|+..+..+++.+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence            4556666666777777666666665442  22222110         0000         22334566899999999999


Q ss_pred             HHccCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 018876          283 YGRLKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYS  319 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~  319 (349)
                      |+..|++..|+++++...+. +++.+..+|..|+.-+.
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999999999999988766 77777899999988543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.35  E-value=0.0019  Score=46.25  Aligned_cols=71  Identities=25%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh-----cCCCCCHHHH
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTY  311 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~  311 (349)
                      ....++..+...|+++.|....+.+....+ .+...|..+|.+|...|+..+|.++|+.+.+     .|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            455566667778888888888888877654 4777888888888888888888888877643     3777776653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.30  E-value=0.00077  Score=41.59  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT   56 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   56 (349)
                      .+.+++++|.++++.+.+.+ |.++..|.....++...|++++|.+.|+...+.
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34455555555555555442 334444444445555555555555555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.29  E-value=0.0034  Score=44.95  Aligned_cols=71  Identities=18%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc-----cCCCcchhh
Q 018876           64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWT  135 (349)
Q Consensus        64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  135 (349)
                      .+...++..+...|+++.|..+...+.... +.+...|..+|.+|...|+...|.+.|+++..     .|+.|+..+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            345556666777777777777777777763 44667777777777777777777777776643     266676654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.27  E-value=0.0092  Score=47.14  Aligned_cols=97  Identities=11%  Similarity=-0.023  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CchHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI--MLDTVFFN  277 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~  277 (349)
                      ..|...+..+.+.|++++|...|+.+....  |+    ...+..+...+...|++++|...|+.+.+..+  ......+-
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            334444444455667777777777766542  22    23555566667777777777777776664321  11233444


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhc
Q 018876          278 CLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+...+...|+.++|..+|+.+.+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555666677777777777766665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.25  E-value=0.0016  Score=40.73  Aligned_cols=65  Identities=22%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhc----CC-CCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      .+++.+...|...|++++|+..|++..+.    |- .|+ ..++..+..+|...|++++|.++++...++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            45666777777777777777777766543    11 122 4456666777777777777777777666554

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.25  E-value=0.018  Score=45.54  Aligned_cols=100  Identities=9%  Similarity=0.009  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHH
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER--IKPSCVTLCSL  244 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l  244 (349)
                      ..|...+..+.+.|++++|...|+.+.+..+...  ...+-.+...|...|++++|...|+.+...-  .+.....+..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3444444444566778888888877776543211  3456667777777888888888887776531  12224445555


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCC
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      ...+...|+.+.|...++.+.+..
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC
Confidence            666777788888888887777654

>PRK15331 chaperone protein SicA; Provisional

Probab=97.22  E-value=0.021  Score=40.83  Aligned_cols=90  Identities=13%  Similarity=-0.009  Sum_probs=66.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876          211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA  290 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  290 (349)
                      .-+...|++++|..+|+-+.-.+ +-+..-+..|..++...+++++|...|......+. -|+..+-....+|...|+.+
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence            33457888999999888876654 34455667777778888888999888877655443 24555556778888889999


Q ss_pred             HHHHHHHHHHhc
Q 018876          291 EMKGVLEVMQQR  302 (349)
Q Consensus       291 ~a~~~~~~~~~~  302 (349)
                      .|...|+.....
T Consensus       123 ~A~~~f~~a~~~  134 (165)
T PRK15331        123 KARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHhC
Confidence            998888888773

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.20  E-value=0.096  Score=43.37  Aligned_cols=31  Identities=13%  Similarity=-0.045  Sum_probs=19.9

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      +.-.+..++.+..-.|+.++|.+..++|...
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4445556666666667777777777776654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.20  E-value=0.011  Score=40.68  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcC--------------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNT--------------PDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST   91 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   91 (349)
                      |..++..++.++++.|+++....+.+..-..              .+..|+.....+++.+++..+++..|.++++...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3456778888888888888887777654221              12344455555555555555555555555555443


Q ss_pred             C-CCCCchHHHHHHHH
Q 018876           92 Q-GIRPNTVTYNTLID  106 (349)
Q Consensus        92 ~-~~~~~~~~~~~l~~  106 (349)
                      . +++.+..+|..|+.
T Consensus        81 ~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLE   96 (126)
T ss_pred             HcCCCCCHHHHHHHHH
Confidence            3 34444444544443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.15  E-value=0.054  Score=39.46  Aligned_cols=130  Identities=12%  Similarity=0.085  Sum_probs=89.8

Q ss_pred             CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHH
Q 018876          130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNI  208 (349)
Q Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  208 (349)
                      -|+...-..+..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++-+.+.. -++.+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            56666666677788888888888888888776555567777777778888888888888888877665421 12334445


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876          209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL  261 (349)
Q Consensus       209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  261 (349)
                      +.+.+...|.+.+|+.-|+.....  .|+...-......+.+.|+.+++..-+
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            667777888888888888877664  455555555556667777666554433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.12  E-value=0.11  Score=42.45  Aligned_cols=124  Identities=14%  Similarity=0.109  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG  249 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  249 (349)
                      +.+..+.-+...|+...|.++-.+..    .|+...|-..+.+++..++|++...+...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            44555667778899888888866653    36899999999999999999988876432      223477889999999


Q ss_pred             hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS  319 (349)
Q Consensus       250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  319 (349)
                      ..|+..+|..++..+.      +    ..-+..|.+.|++.+|.+.--+..      |...+..+...+-
T Consensus       249 ~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~  302 (319)
T PF04840_consen  249 KYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCP  302 (319)
T ss_pred             HCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCC
Confidence            9999999998887722      1    456778899999999987644332      5555555544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.08  E-value=0.0051  Score=37.82  Aligned_cols=56  Identities=11%  Similarity=0.114  Sum_probs=34.5

Q ss_pred             HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      ..|.+.+++++|.+.++.+....  +.+...+.....++.+.|++++|...++...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34556666666666666666553  345555555666666666666666666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.04  E-value=0.13  Score=45.00  Aligned_cols=253  Identities=15%  Similarity=0.113  Sum_probs=136.4

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHH---------HHhhcCCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCC
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLL---------EHMKNTPDCQPDVNTYSILIKSCLKAFAFD--KVQALLSDMSTQGIR   95 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~   95 (349)
                      ...+.+-+..|...|.+++|.++-         +.+...   ..+...++..=.+|.+.++..  +...-++++.+.|-.
T Consensus       556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~  632 (1081)
T KOG1538|consen  556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET  632 (1081)
T ss_pred             cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence            334444555677777777776541         111111   122333444555666655433  444556677777877


Q ss_pred             CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH-----HHHHHHccCCHHHHHHHHHHHHh--cCCCCCH
Q 018876           96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC-----TLRAFGNSGQIDTMEKCYEKFQS--AGIQPSI  168 (349)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~  168 (349)
                      |+...   +...++-.|.+.+|.++|.+--.++-  -...|+-     ..+-+...|..++-..+..+-.+  ..++-. 
T Consensus       633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-  706 (1081)
T KOG1538|consen  633 PNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-  706 (1081)
T ss_pred             chHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence            77643   44566778888888888876532210  0111111     11223333333332222221111  011111 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH----------HHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEY----------MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC  238 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  238 (349)
                         .+....+...|+.++|..+.-+          ..+.. ..+..+...+...+-+...+.-|-++|..|-.       
T Consensus       707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------  775 (1081)
T KOG1538|consen  707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------  775 (1081)
T ss_pred             ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------
Confidence               1223344556666666654321          11111 12455555666666677777888888887743       


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH-----------HHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT-----------VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                        ...+++.....+++.+|..+-+...+.  .|++           .-|...-++|.+.|+-.+|..+++++....
T Consensus       776 --~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  776 --LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             --HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence              234667777888999988888776653  2222           123445567888999999999999887653

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.00  E-value=0.16  Score=42.47  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      ..|...+....+....+.|..+|-++.+.+ +.++..++++++..++ .|++..|..+|+.-...- +-++..-+..+.-
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            345666666667777888888998888777 5677788888888654 577888888887755432 1233333556666


Q ss_pred             HHccCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876          283 YGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK  336 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  336 (349)
                      +...++-..|..+|+..... +..+  ...|..+|.--..-|+...+..+-+++..
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            77788888888888855443 1112  46788888877777887766666555544

>PRK15331 chaperone protein SicA; Provisional

Probab=96.98  E-value=0.073  Score=38.14  Aligned_cols=91  Identities=7%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP  254 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  254 (349)
                      ..-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+ .-|+..+-....++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence            34456789999999999988876644 67777888888888999999999998776544 23444556678889999999


Q ss_pred             hhHHHHHHHHhhC
Q 018876          255 EKLGSVLRFIDNS  267 (349)
Q Consensus       255 ~~a~~~~~~~~~~  267 (349)
                      +.|...|....+.
T Consensus       122 ~~A~~~f~~a~~~  134 (165)
T PRK15331        122 AKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999988873

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.90  E-value=0.0032  Score=39.36  Aligned_cols=63  Identities=19%  Similarity=0.307  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcC----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNT----PDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMS   90 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~   90 (349)
                      .+++.+...|...|++++|++.|++..+.    +...|+ ..++..+..++...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566666666666666666666655421    100111 3345555555666666666666555543

...

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.90  E-value=0.068  Score=36.51  Aligned_cols=68  Identities=7%  Similarity=0.061  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ  165 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  165 (349)
                      +....+..+..+...|.-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44556667777778888888888888776533 566667777788888888888888888888877753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.89  E-value=0.17  Score=44.10  Aligned_cols=176  Identities=18%  Similarity=0.126  Sum_probs=104.5

Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCc-----hHHHHHHHHHHhc----cCchHH
Q 018876           47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPN-----TVTYNTLIDAYGR----AKMFAE  116 (349)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~  116 (349)
                      .-+|.-+...  +||.   +..++....=.||-+.+++.+.+..+.+ +.-.     .-.|+..+..++.    ....+.
T Consensus       177 ~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~  251 (468)
T PF10300_consen  177 FGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE  251 (468)
T ss_pred             HHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence            4445555443  1343   3345566666677777777777665532 2211     1233444433333    346778


Q ss_pred             HHHHHHHHhccCCCcchhhHHHH-HHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876          117 MELTLVKMLSEDCEPDVWTMNCT-LRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGKAGHFEKMSAVME  192 (349)
Q Consensus       117 a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  192 (349)
                      |.++++.+.+.  -|+...|... .+.+...|++++|.+.|+......   .+.....+--+.-.+.-..++++|...|.
T Consensus       252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~  329 (468)
T PF10300_consen  252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL  329 (468)
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence            88888888765  5665555433 345667788888888888655321   11233444556666777888888888888


Q ss_pred             HHHhcCCCCchHHHHHHHHH-HHhcCCh-------HHHHHHHHHHH
Q 018876          193 YMQKYHYSWTIVTYNIVIDA-FGRAGDL-------KQMEYLFRLMR  230 (349)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~  230 (349)
                      .+.+.+ ..+...|.-+..+ +...++.       ++|.+++.+..
T Consensus       330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            887764 3355555555443 3456666       78888887764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.02  Score=44.43  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCchHHHHHH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTVTYNTL  104 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l  104 (349)
                      ..|+.-+.. .+.|++..|...|....+..+ -.-....+--|..++...|+++.|..+|..+.+.-.  +--+..+-.|
T Consensus       143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            356665554 466778888888887776521 011233455577888888888888888888777521  1123566677


Q ss_pred             HHHHhccCchHHHHHHHHHHhcc
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      ..+..+.|+.++|..+|+++.++
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            77778888888888888888776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.68  E-value=0.29  Score=40.65  Aligned_cols=165  Identities=13%  Similarity=0.037  Sum_probs=92.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGK---AGHFEKMSAVMEYMQKYHYSWTIVTYNIV  209 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  209 (349)
                      ...++-+|....+++...++.+.+....   +..+...-....-++.+   .|+.++|.+++..+......+++.+|..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            3345555777777777777777776541   11122222333445555   67777777777775555555677777766


Q ss_pred             HHHHHh---------cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh-h---hHHHHH----HHHhhCC---C
Q 018876          210 IDAFGR---------AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP-E---KLGSVL----RFIDNSD---I  269 (349)
Q Consensus       210 ~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~---~a~~~~----~~~~~~~---~  269 (349)
                      ...|-.         ....++|...|.+.-+.  .|+..+--.++-.+...|.. +   +..++-    ..+.+.|   .
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            665531         11356677777765543  24433322222223333321 1   222222    1111222   2


Q ss_pred             CchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ..+--.+..++.+..-.|+.++|.+..+.|...
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            234555677888888899999999999999876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.60  E-value=0.1  Score=43.99  Aligned_cols=65  Identities=12%  Similarity=0.007  Sum_probs=51.0

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      .+...|+.+..+|...|++++|+..|++..+.   .|+.    .+|..+..+|...|+.++|...+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45667888888888888888888888887766   3443    35788888888888888888888888775

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.51  Score=42.29  Aligned_cols=110  Identities=16%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      .-.+.+--+.-+...|+..+|.++-.+.+    .||...|..-+.+++..+++++.+++-+..+.      +.-|.....
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe  752 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE  752 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence            33445555566667788888888777664    57777777778888888888876665544332      344566778


Q ss_pred             HHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876          282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  330 (349)
                      +|.+.|+.++|.+++-+....     .    -...+|.+.|++.+|.+.
T Consensus       753 ~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  753 ACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             HHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence            888888888888876544321     1    345677777777777654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.59  E-value=0.41  Score=41.71  Aligned_cols=166  Identities=18%  Similarity=0.099  Sum_probs=110.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc-----hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876          172 NILLDSYGKAGHFEKMSAVMEYMQKYH-YSWT-----IVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTL  241 (349)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (349)
                      ..++....=.||-+.+++.+....+.+ +.-.     .-.|+..+..++.    ..+.+.|.+++..+.+.  .|+...|
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf  269 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF  269 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence            445556666789999999888765532 2211     2334445544443    34678899999998765  5665555


Q ss_pred             HHH-HHHHHhcCChhhHHHHHHHHhhCC---CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876          242 CSL-VRAYGHAGKPEKLGSVLRFIDNSD---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA  317 (349)
Q Consensus       242 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  317 (349)
                      ... .+.+...|++++|.+.++......   .+.....+--+...++-.++|++|...|..+.+.. ..+..+|.-+..+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            433 356677899999999999765421   12234455667778888999999999999999864 2345555555443


Q ss_pred             -HHccCch-------hhhHHHHHHHHHhHHh
Q 018876          318 -YSTNGMK-------NHAKEFQDLVEKMDET  340 (349)
Q Consensus       318 -~~~~g~~-------~~a~~~~~~~~~~~~~  340 (349)
                       +...|+.       ++|.+++..+..+...
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence             4667777       7888888877776553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.54  E-value=0.038  Score=43.04  Aligned_cols=103  Identities=15%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018876          202 TIVTYNIVIDAFGR-----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF  276 (349)
Q Consensus       202 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  276 (349)
                      |..+|-..+..+..     .++.+=....++.|.+-|+.-|..+|..|+..+-+..                +.| ..++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nvf  128 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNVF  128 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHHH
Confidence            55566666665543     2445555566667777777777777777766543321                111 1122


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876          277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM  323 (349)
Q Consensus       277 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  323 (349)
                      ......|-++.  +-+.+++++|...|+.||..+-..|+.++.+.+.
T Consensus       129 Q~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  129 QKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            22222222222  3367777777777777777777777777766654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.50  E-value=0.25  Score=39.95  Aligned_cols=130  Identities=8%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHhcCCCCchhhHHHHHHHHHc--CC----ChhHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhcCCh
Q 018876            8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGR--SG----LFDKAFSLLEHMKNTPDC--QPDVNTYSILIKSCLKAFAF   79 (349)
Q Consensus         8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~   79 (349)
                      +++...+++.|.+.|+..+..+|-+.......  ..    ...+|.++|+.|++..+.  .++..++..++..  ..+++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            44566677778888877776555443332222  22    245678888888776432  2334445555433  33333


Q ss_pred             ----hHHHHHHHHHHhCCCCCchH--HHHHHHHHHhccCc--hHHHHHHHHHHhccCCCcchhhHHHH
Q 018876           80 ----DKVQALLSDMSTQGIRPNTV--TYNTLIDAYGRAKM--FAEMELTLVKMLSEDCEPDVWTMNCT  139 (349)
Q Consensus        80 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l  139 (349)
                          +.++.+|+.+.+.|+..+..  ....++..+-....  ...+..+++.+.+.|+++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence                45666677777766654332  22222222211111  34566667777777766666555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.098  Score=43.07  Aligned_cols=125  Identities=10%  Similarity=0.030  Sum_probs=79.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc-----CCC---------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKY-----HYS---------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL  241 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (349)
                      +.+.+.|++..|...|+.....     +.+         .-..++..+..++.+.+++..|+..-...+..+ ++|....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            4567777777777777665432     111         123456666777777888888888777777665 5666666


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH-HHHHHHHHHhc
Q 018876          242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR  302 (349)
Q Consensus       242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~  302 (349)
                      ..=.+++...|+++.|+..|+.+.+..+. |-.+-+.++..-.+..+..+ ..++|..|...
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            66777788888888888888888776532 44444555555444444333 35666666543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.45  E-value=0.26  Score=43.32  Aligned_cols=256  Identities=11%  Similarity=0.113  Sum_probs=139.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHhCCCCCchHHHHHHHHHHhccCc--hHHHHHHHHHHhccC
Q 018876           60 QPDVNTYSILIKSCLKAFAFDKVQAL---------LSDMSTQGIRPNTVTYNTLIDAYGRAKM--FAEMELTLVKMLSED  128 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~  128 (349)
                      .|....+.+-+..+...|.+++|.++         |+.+...  ..+.-.++..=.+|.+..+  +-+...-++++.++|
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg  630 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG  630 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            34445555556677788888877643         2222222  1233445555566666554  334455566777778


Q ss_pred             CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018876          129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI-----LLDSYGKAGHFEKMSAVMEYMQKYHYSWTI  203 (349)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  203 (349)
                      -.|+...   +...++-.|.+.+|-++|.+--..+-  -...|+-     +..-+...|..++-..+.++-.+..  -+.
T Consensus       631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~  703 (1081)
T KOG1538|consen  631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNI  703 (1081)
T ss_pred             CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhc
Confidence            7787643   44566778888888888865322110  1111111     2233445555555444443322110  011


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHH------HHhCCC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRL------MRSERI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV  274 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  274 (349)
                      .-=.+....+...|+.++|..+.-+      +.+.+.   ..+..+...+...+.+...+..|.++|..+-+.       
T Consensus       704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------  776 (1081)
T KOG1538|consen  704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------  776 (1081)
T ss_pred             CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence            1112334455667777777665421      111111   223344555555555666677788888777542       


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV-----------TYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                        ..++......++|.+|..+-+...+.  .||..           -|...-.+|.+.|+..+|.++++.+.
T Consensus       777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence              24667788899999999888766543  33321           23333457778888777777766553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.45  E-value=0.054  Score=45.57  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN  277 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  277 (349)
                      +...++.+..+|...|++++|...|++.++..  |+.    .+|..+..+|...|+.++|...++.+.+.+ .+   .|.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~  147 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS  147 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence            57788889999999999999999999887754  443    358889999999999999999999988752 11   222


Q ss_pred             HHHH--HHHccCChHHHHHHHHHHHhcCC
Q 018876          278 CLVD--AYGRLKCFAEMKGVLEVMQQRGC  304 (349)
Q Consensus       278 ~li~--~~~~~g~~~~a~~~~~~~~~~~~  304 (349)
                      .+..  .+....+..+..++++.+...|.
T Consensus       148 ~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        148 TILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            1111  01122333456667777766664

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.17  Score=40.61  Aligned_cols=153  Identities=8%  Similarity=0.021  Sum_probs=95.7

Q ss_pred             HcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCchHHHHHHHHHHhccCch
Q 018876           38 GRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ---GIRPNTVTYNTLIDAYGRAKMF  114 (349)
Q Consensus        38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  114 (349)
                      ...|++.+|-..++++.+..  |.|..++...=.++...|+...-...+++....   +++.....-..+.-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            34566777777777777653  566667776677777788877777777776654   2222233334445556677888


Q ss_pred             HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 018876          115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP---SINTFNILLDSYGKAGHFEKMSAVM  191 (349)
Q Consensus       115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~  191 (349)
                      ++|++.-++..+.+ +.|...-......+...|++.++.++..+-...--..   -..-|-...-.+...+.++.|+.+|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            88888888877765 5667777777777778888888877665533221000   0111212223345567888888888


Q ss_pred             HH
Q 018876          192 EY  193 (349)
Q Consensus       192 ~~  193 (349)
                      +.
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            54

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.76  Score=41.24  Aligned_cols=113  Identities=11%  Similarity=0.061  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      ...+.+--+..+...|+..+|.++-.+.+    -||-..|-.-+.+++..++|++.+++-+...      ++.-|.-.+.
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe  752 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE  752 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence            33445555666778899999988877664    3688899989999999999998877766543      1356777889


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876          247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV  298 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  298 (349)
                      +|.+.|+.++|.+.+.+.....         -...+|.+.|++.+|.++--+
T Consensus       753 ~c~~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  753 ACLKQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHhcccHHHHhhhhhccCChH---------HHHHHHHHhccHHHHHHHHHH
Confidence            9999999999999887665321         467889999999999876543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.30  E-value=0.13  Score=44.22  Aligned_cols=158  Identities=17%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876           36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA  115 (349)
Q Consensus        36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  115 (349)
                      ...-.++++++.++...-.-.+.+ | ....+.++..+-+.|..+.|+++..+-.            .-.....+.|+++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~  335 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD  335 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence            344566677766655421111111 2 3446666666667777777765543211            1223344566666


Q ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876          116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ  195 (349)
Q Consensus       116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (349)
                      .|.++.++.      .+...|..|.......|+++-|++.|.+..+         +..|+-.|.-.|+.+.-.++.+...
T Consensus       336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~  400 (443)
T PF04053_consen  336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE  400 (443)
T ss_dssp             HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence            666554332      2455677777777777777777776665432         3455555666666666666666665


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876          196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL  228 (349)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  228 (349)
                      ..|-      ++....++.-.|+.++..+++.+
T Consensus       401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  401 ERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            5542      23333334445666666655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.28  E-value=0.52  Score=38.92  Aligned_cols=282  Identities=13%  Similarity=0.030  Sum_probs=130.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCChh
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNT--YSILIKSCLKAFAFD   80 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~   80 (349)
                      .|+-..|.++-.+-.+. +..|......++.+  -.-.|+++.|.+-|+.|...    |....  ...|.-..-+.|+.+
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHH
Confidence            34555555554443321 12233333333333  33456666666666666543    22221  122222233456666


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhh--HHHHHHHH---HccCCHHHHHH
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWT--MNCTLRAF---GNSGQIDTMEK  154 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~  154 (349)
                      .|.+.-+...... +--...+...+...+..|+|+.|+++++.-.... +.++..-  -..|+.+-   .-..+...|..
T Consensus       172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            6666555554432 1123455566666666666666666666544332 1222111  11111110   01122333443


Q ss_pred             HHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 018876          155 CYEKFQSAGIQPSINT-FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-  232 (349)
Q Consensus       155 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  232 (349)
                      .-.+..+.  .|+..- --.-..++.+.|+..++-.+++.+-+..+.|+.  +.  +....+.|+  .+.+=+++.... 
T Consensus       251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~  322 (531)
T COG3898         251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHH
Confidence            33333322  333221 122235566777777777777776665544332  21  112233443  333333322211 


Q ss_pred             CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc-CChHHHHHHHHHHHhc
Q 018876          233 RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQR  302 (349)
Q Consensus       233 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~  302 (349)
                      .++| +..+...+.++-...|++..|..--+.....  .|....|..|.+.-... |+-.++...+.+..+.
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            1222 3344555566666667776666655555442  35566666666554433 7777777776666554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.23  E-value=0.28  Score=35.43  Aligned_cols=126  Identities=7%  Similarity=-0.009  Sum_probs=59.4

Q ss_pred             HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH-HHHHH--HHHHhccCc
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTL--IDAYGRAKM  113 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~  113 (349)
                      +.+.+..++|+.-|..+.+.+.-.-.....-.........|+...|...|++.-...-.|-.. -...|  .-.+...|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            344555666666666665542111111122223334455566666666666655442222211 11111  112345566


Q ss_pred             hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876          114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      ++.+....+.+...+-+.....-..|.-+-.+.|++..|.+.|.++...
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            6666665555554443333333344444555666666666666665543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.1  Score=42.93  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             CCCCCChHHHHHHHHHHHhc-----CCC---------CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDE-----GCD---------ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS   67 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   67 (349)
                      |.+.|++..|...|++....     +.+         .-..+++.+..++.+.+++..|++.-++.....  ++|.-..-
T Consensus       218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALy  295 (397)
T KOG0543|consen  218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALY  295 (397)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHH
Confidence            45778888888887775432     111         113345566666667777777777777666654  56666666


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCchHH-HHHHHHHHhccCch-HHHHHHHHHHhc
Q 018876           68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-YNTLIDAYGRAKMF-AEMELTLVKMLS  126 (349)
Q Consensus        68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~-~~a~~~~~~~~~  126 (349)
                      .-..++...++++.|...|.++++.  .|+... -+-|+.+-.+.... +...++|..|..
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666677777777777777776665  333333 33333333333322 223445555543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.21  E-value=0.013  Score=31.15  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCCC
Q 018876          309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD  348 (349)
Q Consensus       309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  348 (349)
                      .+++.+...|...|++++|..+++...++.....+.+.||
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            4667777778888888888888888888777777777775

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.19  E-value=0.16  Score=34.67  Aligned_cols=90  Identities=9%  Similarity=-0.058  Sum_probs=50.2

Q ss_pred             HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH---HHHHHHHHHhccC
Q 018876           36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGRAK  112 (349)
Q Consensus        36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~  112 (349)
                      +++..|+++.|++.|.+....-  +.....||.-..++.-.|+.++|+.-+++..+..-..+..   .|..-...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            4556677777777776666542  4556667777777766777777766666665542111222   2222233455556


Q ss_pred             chHHHHHHHHHHhcc
Q 018876          113 MFAEMELTLVKMLSE  127 (349)
Q Consensus       113 ~~~~a~~~~~~~~~~  127 (349)
                      +.+.|..-|+..-+.
T Consensus       130 ~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  130 NDDAARADFEAAAQL  144 (175)
T ss_pred             chHHHHHhHHHHHHh
Confidence            666666555544433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.19  E-value=0.87  Score=40.69  Aligned_cols=125  Identities=11%  Similarity=-0.001  Sum_probs=69.2

Q ss_pred             CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 018876           24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL------IKSCLKAFAFDKVQALLSDMSTQGIRPN   97 (349)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~   97 (349)
                      .|.+..|..+.......-.++.|...|-+.....|++.-...-...      ...-.--|.+++|++++-+|-+..    
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence            5888899999888888888888888887776654432211111100      111122477888888887776542    


Q ss_pred             hHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018876           98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYE  157 (349)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  157 (349)
                           ..+..+.+.|+|-.+.++++.--... -..-...|+.+...+.....+++|.+.|.
T Consensus       765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 33455566666666665554321100 01112345555555555555555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.62  Score=42.34  Aligned_cols=179  Identities=14%  Similarity=0.151  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018876           66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF  143 (349)
Q Consensus        66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  143 (349)
                      ...-+..+.+...++-|..+-+   ..+..++.  ........-+.+.|++++|...|-+.+.. +.|     ..++.-|
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf  407 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF  407 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence            3445666777777777776643   33322221  22333344456789999999888777643 233     2356667


Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 018876          144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME  223 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  223 (349)
                      .....+..-..+++.+.+.|.. +...-+.|+.+|.+.++.+.-.+..+... .|..  ..-....+..+.+.+-.++|.
T Consensus       408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~  483 (933)
T KOG2114|consen  408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE  483 (933)
T ss_pred             cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence            7777788888889999998865 66667789999999999988777766554 2211  112344556666667677776


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                      .+-.....     +......++   -..+++++|.+.+..+.
T Consensus       484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence            66554421     333444443   35678888888877654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.06  E-value=0.6  Score=37.61  Aligned_cols=63  Identities=14%  Similarity=0.019  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhccCch---HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           99 VTYNTLIDAYGRAKMF---AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        99 ~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      .++..++.+|...+..   ++|.++++.+.... +-....+..-+..+.+.++.+.+.+++.+|...
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            3445556666655543   33444444443332 112334444455555566666666666666665

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.95  E-value=0.41  Score=37.43  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERI--KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLV  280 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li  280 (349)
                      .|+.-+..+ +.|++..|...|...++...  .-....+.-|.+++...|+++.|...|..+.+..++  --+..+-.|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            344444333 44455666665555554311  111223334555555666666665555555432111  1223444555


Q ss_pred             HHHHccCChHHHHHHHHHHHhc
Q 018876          281 DAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ....+.|+.++|..+|++..+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            5555666666666666666554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.94  E-value=0.57  Score=37.84  Aligned_cols=154  Identities=8%  Similarity=-0.022  Sum_probs=97.1

Q ss_pred             ccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHH
Q 018876          110 RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---GIQPSINTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~  186 (349)
                      ..|++.+|...++++.+.- +.|...++..=.+|...|+...-...++++...   +.+.......++.-++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            4567777777788877653 566667777777788888888777777776654   222223333444555667888888


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018876          187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---IKPSCVTLCSLVRAYGHAGKPEKLGSVLRF  263 (349)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  263 (349)
                      |++.-++..+.+.. |.-.-.++...+.-.|+..++.++..+-...-   --.-..-|-...-.+...+.++.|+.+|+.
T Consensus       194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            88888877776532 56666667777777888888887776543211   000112223333345556778888888865


Q ss_pred             Hh
Q 018876          264 ID  265 (349)
Q Consensus       264 ~~  265 (349)
                      -+
T Consensus       273 ei  274 (491)
T KOG2610|consen  273 EI  274 (491)
T ss_pred             HH
Confidence            43

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.93  E-value=0.41  Score=34.73  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=12.5

Q ss_pred             HHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876          194 MQKYHYSWTIVTYNIVIDAFGRAGDL  219 (349)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~~~~  219 (349)
                      +.+.+++|+...+..++..+.+.|++
T Consensus        20 l~~~~i~~~~~L~~lli~lLi~~~~~   45 (167)
T PF07035_consen   20 LNQHNIPVQHELYELLIDLLIRNGQF   45 (167)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence            33444444455555555555555443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.68  Score=36.75  Aligned_cols=142  Identities=10%  Similarity=0.072  Sum_probs=64.6

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHH
Q 018876           73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM  152 (349)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  152 (349)
                      ....+++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            445555555555555555442 1133444455555666666666666655554332111111111222333333333333


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcC
Q 018876          153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAG  217 (349)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~  217 (349)
                      ..+-.++-..  +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.--|
T Consensus       223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3333333222  2245555555566666666666666554443321 1124445555555555545

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.86  E-value=0.8  Score=37.47  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=133.5

Q ss_pred             CCCChHHHHHHHHHHHhcC--CCCchhhHHHHHHHHHcCCChhHHHHHHH----HhhcCCCCCCCHHHHHHHHHHHHhcC
Q 018876            4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLE----HMKNTPDCQPDVNTYSILIKSCLKAF   77 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~   77 (349)
                      ...+.++|+..+..-..+-  ......++..+..+.++.|.+++++..--    -..+...-..--..|..+.+++-+..
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777776655431  11234567778888888998887665422    22221100112344556666666666


Q ss_pred             ChhHHHHHHHHHHhC-CCCC---chHHHHHHHHHHhccCchHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHccCC
Q 018876           78 AFDKVQALLSDMSTQ-GIRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-----CEPDVWTMNCTLRAFGNSGQ  148 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~  148 (349)
                      ++.+++.+-..-... |..|   .-.....+..+....+.++++++.|+...+..     ......++..+-..|.+..|
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            666666655443332 2222   11233446667777788999999998876532     12234668888889999999


Q ss_pred             HHHHHHHHHHHHh----cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-chHHHHHHHHHHH
Q 018876          149 IDTMEKCYEKFQS----AGIQPSINTFN-----ILLDSYGKAGHFEKMSAVMEYMQK----YHYSW-TIVTYNIVIDAFG  214 (349)
Q Consensus       149 ~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~  214 (349)
                      +++|.-+..+..+    .++..-..-|.     .+.-++...|....|.+.-++..+    .|-.+ .......+.+.|.
T Consensus       178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR  257 (518)
T KOG1941|consen  178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR  257 (518)
T ss_pred             hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            9998876655433    23221112222     233456677887777777766543    33221 2344556777888


Q ss_pred             hcCChHHHHHHHHHH
Q 018876          215 RAGDLKQMEYLFRLM  229 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~  229 (349)
                      ..|+.+.|+.-|+..
T Consensus       258 ~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  258 SRGDLERAFRRYEQA  272 (518)
T ss_pred             hcccHhHHHHHHHHH
Confidence            999999888777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.84  E-value=0.91  Score=39.17  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=13.6

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRL  228 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~  228 (349)
                      +...|..|.....+.|+++-|++.|.+
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            344555555555555555555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.76  E-value=0.052  Score=29.35  Aligned_cols=28  Identities=25%  Similarity=0.186  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ++..+...|...|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555666666666666666666666665

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.74  E-value=0.16  Score=39.74  Aligned_cols=105  Identities=15%  Similarity=0.305  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh
Q 018876           60 QPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW  134 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  134 (349)
                      .-|-.+|...+..+...     +.++-.-..++.|.+-|+..|..+|+.|++.+-+..-                .|.. 
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-  126 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-  126 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence            45666676666665542     4455566677888888999999999998887755321                1110 


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH  183 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (349)
                      .+....-.|-  .+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus       127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            1111111111  1223356666666666766676666666666665554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.69  E-value=0.045  Score=29.62  Aligned_cols=28  Identities=36%  Similarity=0.361  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNT   56 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~   56 (349)
                      ++..+...|.+.|++++|.++|+++.+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556666667777777777777766665

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.65  E-value=0.21  Score=39.56  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      ..++..++..+...|+.+.+...++++.... +-+...|..++.+|...|+...|+..|+.+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            3444445555555555555555555554443 344455555555555555555555555444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.58  E-value=0.23  Score=39.41  Aligned_cols=78  Identities=12%  Similarity=0.012  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc-----cCCCcchhhHHH
Q 018876           64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMNC  138 (349)
Q Consensus        64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  138 (349)
                      .++..++..+...++++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345555666666666666666666666653 33556666666666666666666666665543     255666555555


Q ss_pred             HHHH
Q 018876          139 TLRA  142 (349)
Q Consensus       139 l~~~  142 (349)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.53  E-value=0.33  Score=43.97  Aligned_cols=177  Identities=8%  Similarity=0.095  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHH----HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL----RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL  175 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  175 (349)
                      ....-+..+.+...++-|..+.+.-   +  .+..+...+.    .-+.+.|++++|...|-+.... +.|+     .++
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi  404 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI  404 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence            3445666777778888888776553   2  2333333333    3456889999999888765543 2222     345


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  255 (349)
                      .-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|..  ..-+...+..|.+.+-.+
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~  480 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD  480 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence            5566666777778888999998876 77778889999999999999888877654 3322  122455667777777777


Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM  299 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  299 (349)
                      +|..+-.....     +.....   ..+-..+++++|++.+..+
T Consensus       481 ~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  481 EAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence            77766655443     222222   2345567888888877654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.47  E-value=0.86  Score=35.11  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHH
Q 018876           66 YSILIKSCLKAFAFDKVQALLSDM   89 (349)
Q Consensus        66 ~~~l~~~~~~~~~~~~a~~~~~~~   89 (349)
                      |.....+|...+++++|...+.+.
T Consensus        34 yekAAvafRnAk~feKakdcLlkA   57 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKA   57 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHH
Confidence            333344444445555555444443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.39  E-value=0.62  Score=32.94  Aligned_cols=43  Identities=12%  Similarity=0.126  Sum_probs=22.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          138 CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       138 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                      .++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence            34444444555555555555555544 23455555555555544

>PRK11906 transcriptional regulator; Provisional

Probab=95.30  E-value=1.6  Score=37.22  Aligned_cols=160  Identities=9%  Similarity=0.021  Sum_probs=97.5

Q ss_pred             HHH--HHHHHHHHhcC-----CHHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 018876          169 NTF--NILLDSYGKAG-----HFEKMSAVMEYMQKY-HYSWT-IVTYNIVIDAFGR---------AGDLKQMEYLFRLMR  230 (349)
Q Consensus       169 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  230 (349)
                      ..|  ..++++.....     ..+.|..+|.+.... ...|+ ...|..+..++..         .....+|.++.+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  55666554422     356777888887721 22333 3444444333321         223445667777777


Q ss_pred             hCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCCHH
Q 018876          231 SERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPDKV  309 (349)
Q Consensus       231 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~  309 (349)
                      +.+ +.|......+..+....++++.|...|++....++. ....|........-.|+.++|.+.+++..+... +--..
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            766 567777777777777788899999999998887642 445566666667778999999999888766521 11223


Q ss_pred             HHHHHHHHHHccCchhhhHHHH
Q 018876          310 TYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       310 ~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                      .....+..|+.++ .+.|.+++
T Consensus       410 ~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        410 VIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             HHHHHHHHHcCCc-hhhhHHHH
Confidence            3344444666655 44555544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=0.18  Score=40.13  Aligned_cols=105  Identities=15%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH
Q 018876           22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD--CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV   99 (349)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   99 (349)
                      |.+.+..+...++..-....+++++...+-+++....  ..|+.. -.++++.+. .-++++++.++..=+.-|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            4455566666667666667788888888887776422  112221 122333333 346778888888778888888888


Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSED  128 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  128 (349)
                      +++.+|+.+.+.+++.+|.++...|..+.
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            88888888888888888888877776553

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.21  E-value=1.7  Score=36.87  Aligned_cols=145  Identities=14%  Similarity=0.087  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876           99 VTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS  177 (349)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  177 (349)
                      .+|..+++...+..-++.|..+|-++.+.+ +.+++..+++++..++. |+...|.++|+.-... .+.+..-..-.+..
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence            456667777777777888888888888887 56777888888877654 6777888888775544 22233333456667


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018876          178 YGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY  248 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  248 (349)
                      +...++-+.|..+|+....+ +..+  ...|..+|..-..-|+...+..+-+.|.+.  .|-..+......-|
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            77888888888888854432 1112  567888888878888888888777777653  34443333333333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.20  E-value=0.7  Score=32.45  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=22.9

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      .+.|++++|.+.|+.+...-+.  -....--.++.+|.+.+++++|...+++.++.
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3444455555544444433211  11233333444444444444444444444443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.13  E-value=0.67  Score=31.89  Aligned_cols=140  Identities=16%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 018876          144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME  223 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  223 (349)
                      .-.|..++..++..+.....   +..-++.+|.-....-+-+...+.++.+-+.   .|..          ..|+.....
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi   76 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI   76 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence            34577777777777766543   4444555554444444444444444444322   1211          223333333


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      ..+-.+     ..+...+...+..+...|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus        77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            333221     1223445555666777777777777777776533 4566777777888888888888888888887777


Q ss_pred             CC
Q 018876          304 CK  305 (349)
Q Consensus       304 ~~  305 (349)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            53

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.04  E-value=1.2  Score=34.28  Aligned_cols=224  Identities=13%  Similarity=-0.060  Sum_probs=134.8

Q ss_pred             cCChhHHHHHHHHHHhCCCC-CchHHHHHHHHHHhccCchHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHccCCHHHHH
Q 018876           76 AFAFDKVQALLSDMSTQGIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTME  153 (349)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  153 (349)
                      .+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            35555666666666554322 12466666777777778888887777776642 22444555666666677777777888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876          154 KCYEKFQSAGIQPSINTFNILLD-SYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR  230 (349)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  230 (349)
                      +.+.........+ ......... .+...|+++.+...+........  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            8887777654332 122222223 67778888888888877754221  1123333334444556677777877777776


Q ss_pred             hCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          231 SERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       231 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ... .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus       195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            543 22 3556666677777777777777777777664322 2333344444444566677777777766665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.99  E-value=0.47  Score=35.12  Aligned_cols=98  Identities=10%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH---H
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN---T  103 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~  103 (349)
                      ..+..+...|.+.|+.+.|++.|.++..... ...-...+-.++......+++..+...+.+....--.+......   .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4567778888888888888888888776421 01123445667777778888888877777665431111111111   1


Q ss_pred             HHH--HHhccCchHHHHHHHHHHh
Q 018876          104 LID--AYGRAKMFAEMELTLVKML  125 (349)
Q Consensus       104 l~~--~~~~~~~~~~a~~~~~~~~  125 (349)
                      ...  .+...+++..|-+.|-+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            111  1233566777776665553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.99  E-value=1.5  Score=35.28  Aligned_cols=162  Identities=12%  Similarity=0.140  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          170 TFNILLDSYGKAGHFE---KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      +...++.++...+..+   +|.++++.+...... .+..+..-+..+.+.++.+.+.+.+.+|...- .-....+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            4556666666666544   455555555444322 34555555666666777888888888887652 212234444444


Q ss_pred             HH---HhcCChhhHHHHHHHHhhCCCCchHH-HHHHH-HHH---HHccC------ChHHHHHHHHHHHhc-CCCCCHHHH
Q 018876          247 AY---GHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCL-VDA---YGRLK------CFAEMKGVLEVMQQR-GCKPDKVTY  311 (349)
Q Consensus       247 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i~~---~~~~g------~~~~a~~~~~~~~~~-~~~p~~~~~  311 (349)
                      .+   ... ....+...+..+....+.|... ....+ +..   ..+.+      +.+....+++...+. +.+.+..+-
T Consensus       164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            33   332 2344555555554333333332 11111 111   11111      133444444433322 223333332


Q ss_pred             HHHH-------HHHHccCchhhhHHHHHHH
Q 018876          312 RTMV-------RAYSTNGMKNHAKEFQDLV  334 (349)
Q Consensus       312 ~~l~-------~~~~~~g~~~~a~~~~~~~  334 (349)
                      .++.       ..+.+.++++.|.+.++..
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            2222       2356678899999888754

It is also involved in sporulation [].

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=94.97  E-value=1.5  Score=34.94  Aligned_cols=61  Identities=10%  Similarity=0.086  Sum_probs=27.5

Q ss_pred             cchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018876          131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-GIQPSINTFNILLDSYGKAGHFEKMSAVM  191 (349)
Q Consensus       131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  191 (349)
                      ++..+...++..++..+++.+..++++..... +...|...|..+|+.....|+..-...+.
T Consensus       200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            33344444444444444554444444443333 23334444444455444455444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.89  E-value=2.1  Score=36.33  Aligned_cols=42  Identities=2%  Similarity=-0.007  Sum_probs=20.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH
Q 018876          138 CTLRAFGNSGQIDTMEKCYEKFQSAG----IQPSINTFNILLDSYG  179 (349)
Q Consensus       138 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~  179 (349)
                      ..+.++...|++.++..+++++...=    ..-+..+|+.++-.+.
T Consensus       133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls  178 (549)
T PF07079_consen  133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS  178 (549)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence            33444555666666655555554432    2245555555444443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.88  E-value=0.8  Score=31.47  Aligned_cols=52  Identities=13%  Similarity=0.052  Sum_probs=25.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876          178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR  230 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  230 (349)
                      +...|+.+.|++.|.+....-+. ....||.-..++.-.|+.++|++=+++..
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Al  104 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKAL  104 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence            34445555555555544443222 44455555555555555555555444444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.82  E-value=0.94  Score=32.00  Aligned_cols=127  Identities=8%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      ...++..+...+........++.+...+. .+....+.++..|++.+ ..+....+..      ..+......+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            34567777778889999999998887764 57888899999998764 3444455442      1233445567788888


Q ss_pred             cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc-CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876          251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST  320 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  320 (349)
                      .+.++++..++..+..     ...    .+..+... ++++.|.+++.+-      .++..|..++..+..
T Consensus        82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            8888888888876643     122    23333333 7788888877641      267788888877654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.80  E-value=0.55  Score=34.78  Aligned_cols=62  Identities=19%  Similarity=0.118  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      .+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+++...-.+++..+...+.+...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455566666677777777777766665532222  34445566666666666666666655543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.52  E-value=0.12  Score=26.47  Aligned_cols=27  Identities=19%  Similarity=0.293  Sum_probs=13.6

Q ss_pred             HHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          311 YRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      |..|...|.+.|++++|.++++....+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444555555555555555555554433

>PRK11906 transcriptional regulator; Provisional

Probab=94.51  E-value=2.7  Score=35.93  Aligned_cols=162  Identities=13%  Similarity=0.028  Sum_probs=103.8

Q ss_pred             hhH--HHHHHHHHcc-----CCHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 018876          134 WTM--NCTLRAFGNS-----GQIDTMEKCYEKFQSA-GIQPS-INTFNILLDSYGK---------AGHFEKMSAVMEYMQ  195 (349)
Q Consensus       134 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  195 (349)
                      ..|  ...+.+....     ...+.|..+|.+.... ...|+ ...|..+..++..         ..+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  5555554432     2356688889888722 23343 4455544443332         234566777777788


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HH
Q 018876          196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TV  274 (349)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~  274 (349)
                      +.+.. |+.....+..+....++.+.|..+|++....+ +-...+|......+.-.|+.++|.+.+++..+..+.-- ..
T Consensus       332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            77644 78888888887788888999999999988764 33455666666667779999999999999776543222 22


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHH
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEV  298 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~  298 (349)
                      .....+..|+..+ .+.|.+++-+
T Consensus       410 ~~~~~~~~~~~~~-~~~~~~~~~~  432 (458)
T PRK11906        410 VIKECVDMYVPNP-LKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHcCCc-hhhhHHHHhh
Confidence            3333444666654 5666666543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.48  E-value=1.3  Score=32.17  Aligned_cols=140  Identities=13%  Similarity=0.077  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh-hHHH
Q 018876           61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW-TMNC  138 (349)
Q Consensus        61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~  138 (349)
                      .....|...++ +.+.+..++|+.-|..+.+.|..--+. ............|+...|...|+++-.....|-.. -...
T Consensus        57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR  135 (221)
T COG4649          57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR  135 (221)
T ss_pred             cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence            34566666665 456778899999999999987542221 12223455678899999999999998765445433 1122


Q ss_pred             HH--HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018876          139 TL--RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW  201 (349)
Q Consensus       139 l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  201 (349)
                      +=  -.+...|.+++.....+-+...+.+.-...-..|.-+-.+.|++..|...|..+......|
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            22  2356889999999888888776655555666778788889999999999999987654333

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.43  E-value=1.4  Score=35.33  Aligned_cols=47  Identities=19%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      ++++++.++..=++-|+.||..+++.++..+.+.+++..|.++...+
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~  161 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV  161 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            33444444444444455555555555555555555554444444443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.42  E-value=1.9  Score=33.82  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=27.8

Q ss_pred             CchHHHHHHHHHHhccCCCcchh---hHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876          112 KMFAEMELTLVKMLSEDCEPDVW---TMNCTLRAFGNSGQIDTMEKCYEKFQ  160 (349)
Q Consensus       112 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~  160 (349)
                      .+.++|+.-|+++.+.......+   ....++....+.+++++....+.++.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL   92 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL   92 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            45667777777666542222222   23345566666677766666666654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.37  E-value=2.3  Score=34.53  Aligned_cols=131  Identities=13%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHhcCCh-
Q 018876          150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK--AG----HFEKMSAVMEYMQKYHY---SWTIVTYNIVIDAFGRAGDL-  219 (349)
Q Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-  219 (349)
                      ++...+++.|.+.|+.-+..+|-+.......  ..    ....|..+++.|++..+   .++-..+..++..  ..++. 
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3455666777777776665554432222222  11    24567777777777653   2233344444332  33332 


Q ss_pred             ---HHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          220 ---KQMEYLFRLMRSERIKPSC--VTLCSLVRAYGHAGK--PEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       220 ---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                         +.++.+|+.+.+.|...+.  ...+.++..+.....  ...+..+++.+.+.++++....|..+.-.
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence               4456677777666654432  222333322222111  33567777778888877777666655433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.36  E-value=2.1  Score=34.10  Aligned_cols=144  Identities=12%  Similarity=0.108  Sum_probs=80.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      .....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            455667777777777777665433 3455556677777777777777777766433211122222223344444444444


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCch
Q 018876          257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMK  324 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~  324 (349)
                      ...+-...-.. + -|...-..+...+...|+.++|.+.+-.+.+.  |.. |...-..++..+.-.|..
T Consensus       222 ~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~  288 (304)
T COG3118         222 IQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA  288 (304)
T ss_pred             HHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence            44444444332 1 15555556777777778877777766555544  332 445555666665555533

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.33  E-value=0.12  Score=26.37  Aligned_cols=26  Identities=15%  Similarity=0.068  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHH
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                      +|+.|...|.+.|++++|..++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888999999999999998854

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.23  E-value=4  Score=36.71  Aligned_cols=244  Identities=11%  Similarity=-0.004  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHH----HH-HHhcCChhHHHHHHHHHHh-------CCCCCchHHHHHHHHHHhc
Q 018876           43 FDKAFSLLEHMKNTPDCQPDVNTYSILI----KS-CLKAFAFDKVQALLSDMST-------QGIRPNTVTYNTLIDAYGR  110 (349)
Q Consensus        43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~  110 (349)
                      ...|.++++.....+    +...-..+.    .+ ....+|.+.|..++..+.+       .|   .......+..+|.+
T Consensus       228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence            456888888877664    222222222    22 3356788899999888876       44   33355666677766


Q ss_pred             cC-----chHHHHHHHHHHhccCCCcchhhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----h
Q 018876          111 AK-----MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN-SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----K  180 (349)
Q Consensus       111 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~  180 (349)
                      ..     +.+.|..++.+.-..| .|+....-..+..... ..+...|.++|....+.|.. ..  +-.+..+|.    -
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv  376 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGV  376 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCc
Confidence            43     5677899998888777 5555443333332222 34678899999998888743 22  222222222    2


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH-HH---Hh----cC
Q 018876          181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR-AY---GH----AG  252 (349)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~~  252 (349)
                      ..+...|...+.+.-+.+ .|...--...+..+.. +.++.+.-.+..+.+.+... ..+-...+. ..   ..    ..
T Consensus       377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~  453 (552)
T KOG1550|consen  377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIS  453 (552)
T ss_pred             CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcccccccccccc
Confidence            346888888888888877 3222222222333333 66777766666665554321 111111111 11   11    12


Q ss_pred             ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc----CChHHHHHHHHHHHhcC
Q 018876          253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL----KCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~  303 (349)
                      +.+.+...+......|   +......+...|...    .+++.|...+......+
T Consensus       454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            3444555555555443   344444555554432    34666666666666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.20  E-value=2.1  Score=33.39  Aligned_cols=55  Identities=18%  Similarity=0.150  Sum_probs=31.1

Q ss_pred             HccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          144 GNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                      .+.|++++|.+.|+.+.....  +-...+--.++-++.+.++++.|+..+++.....
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            355666666666666654421  1123344445556666666666666666665544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.19  E-value=3.1  Score=35.35  Aligned_cols=79  Identities=16%  Similarity=0.123  Sum_probs=54.0

Q ss_pred             hhhHHHHHHHHhhCCCCc----hHHHHHHHHHH--HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhh
Q 018876          254 PEKLGSVLRFIDNSDIML----DTVFFNCLVDA--YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA  327 (349)
Q Consensus       254 ~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  327 (349)
                      +.+...+-+.+.+.|+.|    +...-|.|.++  +...|++.++.-.-..+.+  +.|++.+|..+.-+.....++++|
T Consensus       437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence            333444444455566654    33455555554  4568888888766555554  478999999999899999999999


Q ss_pred             HHHHHHH
Q 018876          328 KEFQDLV  334 (349)
Q Consensus       328 ~~~~~~~  334 (349)
                      ..++..+
T Consensus       515 ~~~l~~L  521 (549)
T PF07079_consen  515 WEYLQKL  521 (549)
T ss_pred             HHHHHhC
Confidence            8888765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.02  E-value=1.6  Score=31.38  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=63.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018876           33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK  112 (349)
Q Consensus        33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (349)
                      ++..-.+.++.+++..++..++-..+-.|...++..  ..+...|++.+|..+|+++...+  |....-..|+..|....
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence            334455677888888888888765322233333333  34668888888888888877653  44444445555554443


Q ss_pred             chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876          113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME  153 (349)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  153 (349)
                      .-..-...-+++.+.+..|+..   .+++.+....+...|.
T Consensus        92 ~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~  129 (160)
T PF09613_consen   92 GDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAH  129 (160)
T ss_pred             CChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence            3333444445566554444432   3445554444444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.99  E-value=0.072  Score=26.87  Aligned_cols=31  Identities=16%  Similarity=0.396  Sum_probs=17.2

Q ss_pred             HHHHhcCCCCchhhHHHHHHHHHcCCChhHHH
Q 018876           16 QAMVDEGCDANTQSFTALLSAYGRSGLFDKAF   47 (349)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   47 (349)
                      ++.++.. |-+..+|+.+...|...|++++|+
T Consensus         3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3344432 445666666666666666666654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.72  E-value=2.4  Score=32.47  Aligned_cols=227  Identities=15%  Similarity=0.026  Sum_probs=154.7

Q ss_pred             CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCchHHHH
Q 018876           40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAKMFAEME  118 (349)
Q Consensus        40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  118 (349)
                      .+....+...+...............+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            45666677777666654210113567777888888889999888888887652 23445566777777777888888999


Q ss_pred             HHHHHHhccCCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876          119 LTLVKMLSEDCEPDVWTMNCTLR-AFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ  195 (349)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (349)
                      ..+.........+ ......... .+...|+++.+...+.+......  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            9998888654333 122223333 78899999999999999865321  1233344444455677889999999999888


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      ..........+..+...+...++++.+...+......... ....+......+...+..+.+...+.......
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            7643224677778888888888999999999988765321 23444444445556677888888888877654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.72  E-value=1.8  Score=31.07  Aligned_cols=113  Identities=12%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH-HHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC
Q 018876           70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ  148 (349)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  148 (349)
                      +..-.+.++.+.+..++..+.-.  .|....... -...+...|+|.+|..+++++...  .|.......|+..|....+
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence            34455677888888888888765  344332222 223456788899999999988765  3433344445544444333


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018876          149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA  189 (349)
Q Consensus       149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  189 (349)
                      -..=...-+++.+.+..|+.   ..+++.+....+...|..
T Consensus        93 D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   93 DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE  130 (160)
T ss_pred             ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence            22223333445555444443   234555555555544444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.55  E-value=4.9  Score=35.42  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=63.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChhH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQ-PDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.|..+.+.++|++-.+ |++.+...|......+. ..|+.+.....|+.....-|.. -....|...+..-...+++..
T Consensus        91 klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~  169 (577)
T KOG1258|consen   91 KLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR  169 (577)
T ss_pred             HhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence            45778888999998887 46777777877666544 4577778888888877654321 234557777777777888888


Q ss_pred             HHHHHHHHHhC
Q 018876           82 VQALLSDMSTQ   92 (349)
Q Consensus        82 a~~~~~~~~~~   92 (349)
                      ...++++.++.
T Consensus       170 v~~iyeRilei  180 (577)
T KOG1258|consen  170 VANIYERILEI  180 (577)
T ss_pred             HHHHHHHHHhh
Confidence            88888887764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.37  E-value=2.7  Score=31.92  Aligned_cols=185  Identities=14%  Similarity=0.054  Sum_probs=105.1

Q ss_pred             HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE  116 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  116 (349)
                      |-..|-..-|.--|.+.....  |.-+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-
T Consensus        75 YDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L  151 (297)
T COG4785          75 YDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL  151 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence            334455555555566555442  3345678888888888999999999999988874332333333333 3335688888


Q ss_pred             HHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 018876          117 MELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCY-EKFQSAGIQPSINTFNILLDSYGK-AGHFEKMSAVMEY  193 (349)
Q Consensus       117 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~  193 (349)
                      |.+-+.+.-+.+. .|-...|-.+.   .+.-++.+|..-+ ++...    .|..-|...|-.+.- .=..+.   +++.
T Consensus       152 Aq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~  221 (297)
T COG4785         152 AQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMER  221 (297)
T ss_pred             hHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHH
Confidence            8887777766531 22222332222   2334555555433 33332    244445444333321 112222   2222


Q ss_pred             HHhcCC------CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018876          194 MQKYHY------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI  234 (349)
Q Consensus       194 ~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  234 (349)
                      +....-      ..-..||--+...+...|+.++|..+|+-....++
T Consensus       222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            222111      11257888888899999999999999988876653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.35  E-value=4.2  Score=34.02  Aligned_cols=202  Identities=11%  Similarity=0.095  Sum_probs=104.8

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CchHHHHHHHHHH
Q 018876           33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR----PNTVTYNTLIDAY  108 (349)
Q Consensus        33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~  108 (349)
                      ...+..+.|+++...+........   .++...+..+...  +.++++++...++.....-..    .....|.......
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l   78 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL   78 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            355677778888755555544432   2445555544433  777888777777766553100    0111222222222


Q ss_pred             hccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018876          109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS  188 (349)
Q Consensus       109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  188 (349)
                      .+...+.+..++.+-.....  .+             ..+.....+.|+.=.. ...++..++..++..-.-        
T Consensus        79 ~~lq~L~Elee~~~~~~~~~--~~-------------~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~--------  134 (352)
T PF02259_consen   79 VKLQQLVELEEIIELKSNLS--QN-------------PQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRL--------  134 (352)
T ss_pred             HHHhHHHHHHHHHHHHHhhc--cc-------------HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH--------
Confidence            22222222222222211110  00             1112222333332221 234566666555532110        


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                       ++..+  ........+|..++..+.+.|+++.|...+..+...+...   .+.....-.+..-..|+..+|...++...
T Consensus       135 -~l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~  211 (352)
T PF02259_consen  135 -VLSLI--LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL  211 (352)
T ss_pred             -HHhcc--cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             11111  1223356778888999999999999999999887643111   33445555667778899999999988877


Q ss_pred             h
Q 018876          266 N  266 (349)
Q Consensus       266 ~  266 (349)
                      .
T Consensus       212 ~  212 (352)
T PF02259_consen  212 K  212 (352)
T ss_pred             H
Confidence            6

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.34  E-value=2.3  Score=30.99  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=20.5

Q ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHH
Q 018876           14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLL   50 (349)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   50 (349)
                      .+..+.+.+++|+...+..+++.+.+.|++.....++
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll   52 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL   52 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444445556666666666666666666655444443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.34  E-value=4.2  Score=33.96  Aligned_cols=290  Identities=13%  Similarity=0.106  Sum_probs=174.6

Q ss_pred             hHHHHHHHHH--cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCchHH--HH
Q 018876           29 SFTALLSAYG--RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVT--YN  102 (349)
Q Consensus        29 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~  102 (349)
                      .|..|-.++.  ..|+-..|.++-.+..+.  +..|....-.++.+  ..-.|+++.|.+-|+.|...   |....  ..
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR  158 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR  158 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence            3555555544  456777777776665432  23455555555543  44579999999999999863   33222  22


Q ss_pred             HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH
Q 018876          103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSIN--TFNILLDSYG  179 (349)
Q Consensus       103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~  179 (349)
                      .|.-.--+.|..+.|.++-+..-... +--...+...+...+..|+++.|+++++.-.... +.++..  .-..|+.+-.
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA  237 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA  237 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence            33334456788888888887776553 3335677888899999999999999998765543 233322  1222332211


Q ss_pred             ---hcCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876          180 ---KAGHFEKMSAVMEYMQKYHYSWTIVT-YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       180 ---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  255 (349)
                         -..+...|...-.+..+.  .|+..- --.-..++.+.|+..++-.+++.+-+..  |.+.++...+  ..+.|+  
T Consensus       238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--  309 (531)
T COG3898         238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--  309 (531)
T ss_pred             HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--
Confidence               123455555555444443  344332 2234567889999999999999987764  4444433322  344554  


Q ss_pred             hHHHHHHHHhhC-CCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCchhhhHHHHH
Q 018876          256 KLGSVLRFIDNS-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKNHAKEFQD  332 (349)
Q Consensus       256 ~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~  332 (349)
                      .+..-+++.... .++| +....-.+..+-...|++..|..--+...+.  .|....|..|.+.- ...|+-.++...+.
T Consensus       310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence            333333333211 1222 4556666777888889998888777766654  67777777777754 34487777776655


Q ss_pred             HH
Q 018876          333 LV  334 (349)
Q Consensus       333 ~~  334 (349)
                      ..
T Consensus       388 qa  389 (531)
T COG3898         388 QA  389 (531)
T ss_pred             HH
Confidence            43

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.24  E-value=0.11  Score=26.21  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHccCChHHH
Q 018876          272 DTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a  292 (349)
                      +...|+.+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            344444444444444444444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.22  E-value=3.2  Score=32.38  Aligned_cols=54  Identities=7%  Similarity=0.046  Sum_probs=26.9

Q ss_pred             HhcCChhHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876           74 LKAFAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      .+.|++++|.+.|+.+.....  +-...+.-.++-++.+.++++.|...+++....
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            445566666666665554411  112233334444555555566665555555544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.16  E-value=8.6  Score=37.08  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      |.+....+.....+++|.-.|+..-+.         .-.+.+|..+|+|.+|..+..++.... .--..+-..|+.-+..
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVE 1011 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHH
Confidence            344444455566666666666544221         224556677778888777777664211 0111122456666777


Q ss_pred             cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876          251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM  299 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  299 (349)
                      .+++-+|-++..+....   |.     ..+..|++...|++|.++....
T Consensus      1012 ~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             cccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence            77777777766655432   11     2334455666666666655433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.15  E-value=5.2  Score=34.58  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-chHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      +-..+..++-+.|+.++|.+.++++.+.... -+..+...|+.++...+.+.++..++.+..+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            3344555666677777777777776543221 1334555677777777777777777766544

The molecular function of this protein is uncertain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.10  E-value=4.3  Score=33.49  Aligned_cols=227  Identities=10%  Similarity=-0.023  Sum_probs=111.8

Q ss_pred             HHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH----HHHhCC-CCCchHHHHHHHHHHhc
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLS----DMSTQG-IRPNTVTYNTLIDAYGR  110 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~  110 (349)
                      +....+.++|+..+.+....-. ...-..++..+..+.++.|.+++++..--    -..+.. -..--..|..+.+++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777777777776654311 01122345566667777777666554322    111110 00012234444455555


Q ss_pred             cCchHHHHHHHHHHhcc-CCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhc
Q 018876          111 AKMFAEMELTLVKMLSE-DCEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-----IQPSINTFNILLDSYGKA  181 (349)
Q Consensus       111 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~  181 (349)
                      .-++.+++.+-..-... |..|   .-.....+..++...+.++++++.|+...+.-     ......++..|-..|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            55555555544433322 1111   11223345556666677777777777654421     112344566777777777


Q ss_pred             CCHHHHHHHHHHHHh----cCCCCch------HHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCc-HHHHHHHHH
Q 018876          182 GHFEKMSAVMEYMQK----YHYSWTI------VTYNIVIDAFGRAGDLKQMEYLFRLMR----SERIKPS-CVTLCSLVR  246 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~----~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~  246 (349)
                      .|.++|.-...+..+    .++. |.      ...-.+.-++...|....|.+.-++..    ..|-.+. ......+..
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            777777666554432    2211 11      111223334455666666666555542    2232221 223344555


Q ss_pred             HHHhcCChhhHHHHHHHH
Q 018876          247 AYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~  264 (349)
                      .|-..|+.+.|+.-|+..
T Consensus       255 IyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHhcccHhHHHHHHHHH
Confidence            666667777666655544

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.86  E-value=7.4  Score=35.55  Aligned_cols=90  Identities=13%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH-HHccCC-----------hHHHHHHHHHHHhcC-----CC
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA-YGRLKC-----------FAEMKGVLEVMQQRG-----CK  305 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~-----------~~~a~~~~~~~~~~~-----~~  305 (349)
                      ....-+...|+++.|..+|..+.+...  -....|.++.- ......           ...|..+.+.....+     +.
T Consensus       419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~  496 (613)
T PF04097_consen  419 QAAREAEERGRFEDAILLYHLAEEYDK--VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS  496 (613)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence            334556678888888888887765321  22233333322 222222           344555555444332     11


Q ss_pred             -CCHHHHHHHHH-----HHHccCchhhhHHHHHHH
Q 018876          306 -PDKVTYRTMVR-----AYSTNGMKNHAKEFQDLV  334 (349)
Q Consensus       306 -p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~  334 (349)
                       .+..|+..|+.     -+.+.|+++.|.+.++.+
T Consensus       497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L  531 (613)
T PF04097_consen  497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL  531 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence             12455555554     357789999888776654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=92.79  E-value=1.4  Score=28.44  Aligned_cols=44  Identities=11%  Similarity=0.042  Sum_probs=20.2

Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                      +.+-++.+....+.|++.+..+.+++|-+.+++..|.++++-++
T Consensus        26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.72  E-value=2.5  Score=29.77  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=40.6

Q ss_pred             HHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG  214 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (349)
                      ..+.|++++|.+.|+.+...-.  +-....--.++.+|.+.+++++|...+++..+.++.....-|...+.+++
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            3456677777777766665411  11234445566667777777777777777666654333344444444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.69  E-value=0.32  Score=24.25  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +|..+...|...|++++|+..|++..+.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4555555666666666666666655544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.67  E-value=6.2  Score=34.16  Aligned_cols=59  Identities=12%  Similarity=0.042  Sum_probs=34.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876          172 NILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMR  230 (349)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  230 (349)
                      ..+..++.+.|+.++|++.++++.+.... ........|+.++...+.+.++..++.+..
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            33445555666666666666666543322 123355556666666666666666666653

The molecular function of this protein is uncertain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.63  E-value=10  Score=36.60  Aligned_cols=87  Identities=13%  Similarity=0.070  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG  284 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  284 (349)
                      .|.+....+.....+++|.-.|+..-+         ....+.+|...|++.+|+.+...+....-. -..+-..|+.-+.
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence            344444555567777777777765422         223467788888888888888776542211 1122356777788


Q ss_pred             ccCChHHHHHHHHHHHh
Q 018876          285 RLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       285 ~~g~~~~a~~~~~~~~~  301 (349)
                      ..+++-+|.+++.+...
T Consensus      1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HcccchhHHHHHHHHhc
Confidence            88888888888877664

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.56  E-value=2.9  Score=31.36  Aligned_cols=79  Identities=6%  Similarity=-0.067  Sum_probs=54.9

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHccCCH
Q 018876           73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQI  149 (349)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  149 (349)
                      +.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+.   +-.+|+..+..|...+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            444454 667777777777765556666666666665 56677888887776643   3366788888888888888888


Q ss_pred             HHHH
Q 018876          150 DTME  153 (349)
Q Consensus       150 ~~a~  153 (349)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8774

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.53  E-value=0.47  Score=23.60  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          310 TYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +|..+..+|...|++++|...+++..++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            455555556666666666666665555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=92.39  E-value=1.8  Score=27.98  Aligned_cols=44  Identities=9%  Similarity=0.239  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876          152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ  195 (349)
Q Consensus       152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (349)
                      +.+-++.+......|++....+.+++|.+.+++..|.++|+-++
T Consensus        26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444555555555555555555555555555555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.39  E-value=0.49  Score=23.42  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .|..+...+...|++++|.+.|++..+.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3444555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.89  E-value=10  Score=34.86  Aligned_cols=254  Identities=9%  Similarity=-0.045  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG  144 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  144 (349)
                      .-...+..+.+.+++......+.    . .+.+...-.....+....|+.++|....+.+=..| ......++.++..+.
T Consensus       101 Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~  174 (644)
T PRK11619        101 LQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQ  174 (644)
T ss_pred             HHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHH
Confidence            33444555666677776665221    1 23455555667777778888777777666665554 334556777777777


Q ss_pred             ccCCHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876          145 NSGQIDTME--KCYEKFQSAGIQPSINTFNILLDSYGK------------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVI  210 (349)
Q Consensus       145 ~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  210 (349)
                      +.|......  +-+..+...|   +...-..+...+..            ..+...+...+..     .+++...-..++
T Consensus       175 ~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~  246 (644)
T PRK11619        175 QSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAA  246 (644)
T ss_pred             HcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHH
Confidence            666543322  1122222222   22222222221100            0011111111110     112221111111


Q ss_pred             HHHH--hcCChHHHHHHHHHHHhCC-CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876          211 DAFG--RAGDLKQMEYLFRLMRSER-IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR  285 (349)
Q Consensus       211 ~~~~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  285 (349)
                      .++.  ...+.+.|..++....... ..+..  .+...+.......+...++...++......  .+......-+..-.+
T Consensus       247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~  324 (644)
T PRK11619        247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALG  324 (644)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHH
Confidence            1221  2344577777777653332 22211  223333333333322444555555443322  133334444555557


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          286 LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       286 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                      .++++.+...+..|.... .-...-.--+.+++...|+.++|..+++.+.
T Consensus       325 ~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        325 TGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             ccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            777777777777664432 1133333445556566777777777776653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.71  E-value=3.5  Score=29.22  Aligned_cols=52  Identities=12%  Similarity=0.190  Sum_probs=27.3

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      ..++++++..+++.|.-..+-.+...++...+  +...|++.+|..+|+++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence            35666666666666654422122333333333  44666666666666666655

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.69  E-value=5.8  Score=31.70  Aligned_cols=58  Identities=14%  Similarity=0.048  Sum_probs=37.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM  194 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (349)
                      ++...+.|...|.+.+|.++.++..... +.+...+..++..+...||--.+..-++.+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3444556667777777777777766653 446666777777777777766665555554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.57  E-value=0.51  Score=23.36  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      ..|..+...+...|++++|++.++...++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4577888899999999999999999888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.33  E-value=8.9  Score=33.09  Aligned_cols=97  Identities=8%  Similarity=0.022  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG  214 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (349)
                      ........+...|+++.+.+.+...... +.....+...+++...+.|++++|...-.-|....+. ++..........-
T Consensus       325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~  402 (831)
T PRK15180        325 LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSAD  402 (831)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHH
Confidence            3334444566778888888777665543 2335566777888888888888888888877766554 4444444444444


Q ss_pred             hcCChHHHHHHHHHHHhCC
Q 018876          215 RAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~  233 (349)
                      ..|-++++...|+++...+
T Consensus       403 ~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        403 ALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHhHHHHHHHHHHHHhccC
Confidence            5667788888888776544

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.29  E-value=2.9  Score=27.37  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+.+
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4444455555555556666666666666666666666666555543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.10  E-value=4.1  Score=28.88  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=38.0

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhh-HHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQS-FTALLSAYGRSGLFDKAFSLLEHMKNTP   57 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~   57 (349)
                      .++++++..+++.|.-.  .|+... -..-...+...|++.+|+.+|+.+.+..
T Consensus        23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            57788899999988765  454332 2333445789999999999999998763

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.03  E-value=3.6  Score=30.91  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=19.0

Q ss_pred             cCChhhHHHHHHHHhhC---CCCchHHHHHHHHHHHHccCChHHH
Q 018876          251 AGKPEKLGSVLRFIDNS---DIMLDTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a  292 (349)
                      ..+.+++..++....+.   +-.+|+..+..|+..|.+.|+++.|
T Consensus       153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            44455555544443321   1134444555555555555554444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.99  E-value=0.72  Score=24.12  Aligned_cols=29  Identities=24%  Similarity=0.235  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+++.+...|...|++++|..++++....
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46788888889999999999888887653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.87  E-value=3.8  Score=30.74  Aligned_cols=90  Identities=9%  Similarity=0.011  Sum_probs=67.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876          211 DAFGRAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR  285 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  285 (349)
                      .-+...|++++|..-|...++.- ++.     ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence            34678899999999999988753 222     234455556778889999999988888887642 33344444667888


Q ss_pred             cCChHHHHHHHHHHHhc
Q 018876          286 LKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       286 ~g~~~~a~~~~~~~~~~  302 (349)
                      ...+++|+.=|+.+...
T Consensus       181 ~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILES  197 (271)
T ss_pred             hhhHHHHHHHHHHHHHh
Confidence            99999999999999887

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.62  E-value=13  Score=33.63  Aligned_cols=118  Identities=14%  Similarity=0.096  Sum_probs=55.8

Q ss_pred             CCCCChHHHHHHHHHHHh-------cCCCCchhhHHHHHHHHHcCC-----ChhHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 018876            3 GKCKQPEKAHELFQAMVD-------EGCDANTQSFTALLSAYGRSG-----LFDKAFSLLEHMKNTPDCQPDVNTYSILI   70 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   70 (349)
                      +...+++.|...|+...+       .|   .+.+...+..+|.+..     +.+.|..++......+  .|+.......+
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~  334 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVL  334 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence            345566666666666555       33   3334445555555432     4455666666655543  34444332222


Q ss_pred             HHHHh-cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh----ccCchHHHHHHHHHHhccC
Q 018876           71 KSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG----RAKMFAEMELTLVKMLSED  128 (349)
Q Consensus        71 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~  128 (349)
                      ..... ..+...|.++|....+.|..   ..+-.+..+|.    ...+...|..++.+.-+.|
T Consensus       335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  335 YETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            22222 23455666666666665532   11111222221    1234555666666655555

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.39  E-value=0.91  Score=22.47  Aligned_cols=30  Identities=17%  Similarity=0.294  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          310 TYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +|..+...|...|+++.|.+.++...++++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344555555566666666666665555543

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.99  E-value=10  Score=31.66  Aligned_cols=198  Identities=13%  Similarity=0.073  Sum_probs=108.0

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHhcCChh
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD---CQPDVNTYSILIKSCLKAFAFD   80 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~   80 (349)
                      +.|+++...+........  .++...+..+...  ..++++++....+.....-.   .......|......+.+...+.
T Consensus        10 rl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~   85 (352)
T PF02259_consen   10 RLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLV   85 (352)
T ss_pred             hcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence            457777744444444332  2344445444433  88999999888887765310   0111223333333333333333


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ  160 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  160 (349)
                      +..++.+-.....  .+             ..+.....+.++.=.. ...++..++..++..-..         ++..+ 
T Consensus        86 Elee~~~~~~~~~--~~-------------~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~---------~l~~~-  139 (352)
T PF02259_consen   86 ELEEIIELKSNLS--QN-------------PQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRL---------VLSLI-  139 (352)
T ss_pred             HHHHHHHHHHhhc--cc-------------HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH---------HHhcc-
Confidence            3333333322211  01             1222223333333222 235666666666543110         11101 


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                       ........+|..+...+.+.|.++.|...+..+...+...   .+...-.-+..+-..|+..+|...++.....
T Consensus       140 -~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  140 -LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             -cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             2223456678889999999999999999999988754222   3444555567777889999999999888763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=89.91  E-value=8.8  Score=30.74  Aligned_cols=84  Identities=6%  Similarity=-0.037  Sum_probs=47.4

Q ss_pred             CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHH-----HHhcCCCCCH
Q 018876          235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV-----MQQRGCKPDK  308 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~p~~  308 (349)
                      .++..+...++..++..+++....++++..... ++.-|...|..+|+.....|+..-..++.++     +.+.|+..+.
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~  278 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD  278 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence            455566666666666666666666666655443 4445666666666666666666655555543     2233444444


Q ss_pred             HHHHHHHHHH
Q 018876          309 VTYRTMVRAY  318 (349)
Q Consensus       309 ~~~~~l~~~~  318 (349)
                      ..-..+-+.+
T Consensus       279 ~L~~~L~~LF  288 (292)
T PF13929_consen  279 ELRSQLSELF  288 (292)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.90  E-value=0.2  Score=35.58  Aligned_cols=87  Identities=15%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      .++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++....       .-...++..|.+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence            35666677778888888888887666556677778888888888777777777662222       11234667777778


Q ss_pred             ChHHHHHHHHHHHh
Q 018876          288 CFAEMKGVLEVMQQ  301 (349)
Q Consensus       288 ~~~~a~~~~~~~~~  301 (349)
                      .++++.-++.++..
T Consensus        85 l~~~a~~Ly~~~~~   98 (143)
T PF00637_consen   85 LYEEAVYLYSKLGN   98 (143)
T ss_dssp             SHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHccc
Confidence            88888777766543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.85  E-value=6.8  Score=29.31  Aligned_cols=92  Identities=13%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      ...+...+++++|..-++.........+  ..+-..|.+.....|.++.|+..++...+.+.  .......-.+.+...|
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg  173 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence            3445667777777777766553211100  11122344555667777777777776665543  3344445566677777


Q ss_pred             ChHHHHHHHHHHHhcC
Q 018876          288 CFAEMKGVLEVMQQRG  303 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~~  303 (349)
                      +-++|..-|+.....+
T Consensus       174 ~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         174 DKQEARAAYEKALESD  189 (207)
T ss_pred             chHHHHHHHHHHHHcc
Confidence            7777777777777664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.26  E-value=8.9  Score=29.89  Aligned_cols=206  Identities=16%  Similarity=0.123  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA  107 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  107 (349)
                      ..|..-..+|....++++|..-+.+..+-.  ..|...|.       -.+.++.|.-+.+++.+.  +--...|+.....
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l  100 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence            345555566777777777777666655421  12222221       122345555566666553  2233455666677


Q ss_pred             HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---C--CCCCHHHHHHHHHHHHhcC
Q 018876          108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---G--IQPSINTFNILLDSYGKAG  182 (349)
Q Consensus       108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~  182 (349)
                      |..+|..+.|-..+++.-+.                ....++++|+++|++....   +  ...-...+...-+.+.+..
T Consensus       101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~  164 (308)
T KOG1585|consen  101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE  164 (308)
T ss_pred             HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence            77777776666665554321                1233445555555543321   1  0111223344445566666


Q ss_pred             CHHHHHHHHHHHHhcC----CCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCh
Q 018876          183 HFEKMSAVMEYMQKYH----YSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RIKPSCVTLCSLVRAYGHAGKP  254 (349)
Q Consensus       183 ~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  254 (349)
                      .+++|-..+.+-....    --++ -..|-..|-.+.-..++..|...++.--+.   .-+-+..+...|+.+| ..|+.
T Consensus       165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~  243 (308)
T KOG1585|consen  165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI  243 (308)
T ss_pred             HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence            6666655554322110    0011 122334444445556677777777653322   1123445555666555 34566


Q ss_pred             hhHHHHH
Q 018876          255 EKLGSVL  261 (349)
Q Consensus       255 ~~a~~~~  261 (349)
                      +++..++
T Consensus       244 E~~~kvl  250 (308)
T KOG1585|consen  244 EEIKKVL  250 (308)
T ss_pred             HHHHHHH
Confidence            5555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.18  E-value=7.7  Score=29.03  Aligned_cols=131  Identities=15%  Similarity=0.023  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH--HHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL--CSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCL  279 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l  279 (349)
                      ..|..++.... .+.. +.......+...........+  ..+...+...++++.|..-++........  ....+--.|
T Consensus        55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL  132 (207)
T COG2976          55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL  132 (207)
T ss_pred             HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            34444444432 3333 445555555543312222222  23456788999999999999877654211  112233346


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      .+.....|.+++|+.+++.....+.  .......-.+.+...|+.++|+..|+...++.
T Consensus       133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            6778889999999999988776643  33334455668999999999999999887774

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.99  E-value=4.8  Score=26.40  Aligned_cols=45  Identities=9%  Similarity=0.220  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876          152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK  196 (349)
Q Consensus       152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (349)
                      ..+-++.+......|++.+..+.+++|.+.+++..|.++|+-++.
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444444445555666666666666666666666666655543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.94  E-value=0.2  Score=35.62  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876          139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (349)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            34455556666666666666665544445666666666666665555555555411       11222334444555555


Q ss_pred             hHHHHHHHHH
Q 018876          219 LKQMEYLFRL  228 (349)
Q Consensus       219 ~~~a~~~~~~  228 (349)
                      ++++..++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK09687 putative lyase; Provisional

Probab=88.59  E-value=12  Score=30.34  Aligned_cols=235  Identities=12%  Similarity=-0.001  Sum_probs=133.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch----HHHHHHHHHHhccCCCcchhh
Q 018876           60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF----AEMELTLVKMLSEDCEPDVWT  135 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~  135 (349)
                      .+|.......+.++...|. +.+...+..+...   +|...-...+.++...|+.    .++...+..+...  .++..+
T Consensus        34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V  107 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV  107 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence            3566666666666666665 3344444444433   3555555566666666652    4566666666433  344444


Q ss_pred             HHHHHHHHHccCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876          136 MNCTLRAFGNSGQI-----DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI  210 (349)
Q Consensus       136 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  210 (349)
                      -...+.++...+..     ..+...+.....   .++..+-...+.++.+.++ +.+...+-.+.+.   ++...-...+
T Consensus       108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~  180 (280)
T PRK09687        108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA  180 (280)
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence            44555555544321     223333333322   3355666677777777776 4455555555543   3445555556


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018876          211 DAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF  289 (349)
Q Consensus       211 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  289 (349)
                      .++.+.+ +.+.+...+..+..   .++..+-...+.++.+.++.. +...+-...+.+   +  .....+.++...|..
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK  251 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence            6666543 24456666666553   456667777788888888754 444444444432   2  234577788888885


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          290 AEMKGVLEVMQQRGCKPDKVTYRTMVRAYS  319 (349)
Q Consensus       290 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  319 (349)
                       +|...+..+.+.  .||..+-...+.+|.
T Consensus       252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence             688888887764  347766666666554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.46  E-value=1.4  Score=23.83  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=13.0

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhc
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +..+|...|+.+.|.+++++....
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            445555555555555555555543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.06  E-value=0.42  Score=23.46  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=12.0

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhcC
Q 018876           33 LLSAYGRSGLFDKAFSLLEHMKNT   56 (349)
Q Consensus        33 l~~~~~~~~~~~~a~~~~~~~~~~   56 (349)
                      +..++.+.|++++|.+.|+.+.+.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            344444455555555555555443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.04  E-value=5.7  Score=30.31  Aligned_cols=52  Identities=13%  Similarity=0.047  Sum_probs=22.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHH
Q 018876           70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV  122 (349)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  122 (349)
                      ++.+.+.+..++++...++-.+.. +-|..+-..++..++-.|+|++|..-++
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~   59 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN   59 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence            344444444455444444443332 2233344444444555555555444333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.97  E-value=5.5  Score=30.38  Aligned_cols=76  Identities=17%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCchHHHHHHHHH
Q 018876           30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTLIDA  107 (349)
Q Consensus        30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~  107 (349)
                      .+..++.+.+.+.+++++...+.-.+..  +.|...-..+++.++-.|++++|..-++-.-...  ..+-..+|..++.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            4455667778888888888887666552  4566667778888888999998887766655431  23345566666654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.87  E-value=1.2  Score=21.71  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=13.3

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhc
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +..++.+.|++++|.+.|+++.+.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            444455555666666666555544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.74  E-value=2  Score=21.19  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+|..+...|...|++++|...|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35677788888888888888888887764

...

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=87.24  E-value=12  Score=29.88  Aligned_cols=87  Identities=10%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG-----  179 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----  179 (349)
                      |.+++..++|.+++...-+..+.--+........-|-.|.+.+++..+.++-..-.+..-.-+..-|.+++..|.     
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            456666666666666555444332122233344445556666666666665555444322222333555544443     


Q ss_pred             hcCCHHHHHHHH
Q 018876          180 KAGHFEKMSAVM  191 (349)
Q Consensus       180 ~~~~~~~a~~~~  191 (349)
                      -.|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence            346666666655

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.00  E-value=1.1  Score=20.77  Aligned_cols=18  Identities=22%  Similarity=0.004  Sum_probs=7.9

Q ss_pred             HHHHHHccCChHHHHHHH
Q 018876          279 LVDAYGRLKCFAEMKGVL  296 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~  296 (349)
                      +..++...|++++|..++
T Consensus         7 la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    7 LARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            334444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=86.32  E-value=5.1  Score=32.79  Aligned_cols=48  Identities=19%  Similarity=0.032  Sum_probs=21.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLE   51 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   51 (349)
                      .++|.+++|++.|..-.... +.|+..+..-..+|.+..++..|..-.+
T Consensus       108 FKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen  108 FKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             hhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence            34455555555554444331 2244444444444444444444443333

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.77  E-value=6.4  Score=24.41  Aligned_cols=47  Identities=6%  Similarity=-0.067  Sum_probs=27.4

Q ss_pred             ccCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCchhhhHHHH
Q 018876          285 RLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       285 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                      ..++.++|+..|....+.-..|.  -.++..++.+|+..|++.+++++-
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777766665533222  244556666777777766666543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.77  E-value=25  Score=31.29  Aligned_cols=312  Identities=11%  Similarity=0.032  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHhcCCCCchh-hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-hcCChhHHHHHH
Q 018876            9 EKAHELFQAMVDEGCDANTQ-SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL-KAFAFDKVQALL   86 (349)
Q Consensus         9 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~   86 (349)
                      +.+..+++.+...  -|-.. -|......=.+.|..+.+.++|++...  +++-+...|...+..+. ..|+.+.....|
T Consensus        62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f  137 (577)
T KOG1258|consen   62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLF  137 (577)
T ss_pred             HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            3344445555433  23222 344445555566777777778777765  33455555555444333 346666666777


Q ss_pred             HHHHhC-CCC-CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc-----cCCHHHHHHHHHHH
Q 018876           87 SDMSTQ-GIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN-----SGQIDTMEKCYEKF  159 (349)
Q Consensus        87 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~  159 (349)
                      +..... |.. .+...|...+..-..++++.....++++.++....-=...|.........     ....+++.++-...
T Consensus       138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~  217 (577)
T KOG1258|consen  138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV  217 (577)
T ss_pred             HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence            766554 321 24456666776666777777777777777643211111111111111111     11122222221111


Q ss_pred             Hh--------------------cCCCCCHH--HHHHHH-------HHHHhcCCHHHHHHHHHHHHhcC---C----CCch
Q 018876          160 QS--------------------AGIQPSIN--TFNILL-------DSYGKAGHFEKMSAVMEYMQKYH---Y----SWTI  203 (349)
Q Consensus       160 ~~--------------------~~~~~~~~--~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~  203 (349)
                      ..                    .+.+.+..  ..+.+-       ..+...-...+....++.-.+..   +    .++.
T Consensus       218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql  297 (577)
T KOG1258|consen  218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL  297 (577)
T ss_pred             HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence            10                    00000000  000110       11111112222222222222211   1    2245


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLVD  281 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~  281 (349)
                      .+|+.-+..-...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++....+.-.+  |....+.+.+ 
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-  375 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF-  375 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-
Confidence            67777788788888888888888776521 1122344555555555668888888777766554332  2333333222 


Q ss_pred             HHHccCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCchhhhHH
Q 018876          282 AYGRLKCFAEMKGVLEVMQQRGCKPDKV-TYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~  329 (349)
                       .-..|++..|..+++.+...-  |+.. .-..-+....+.|+.+.+..
T Consensus       376 -~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  376 -EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             -HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence             234678999999999888763  4432 22233444566777777663

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.31  E-value=8.7  Score=31.54  Aligned_cols=54  Identities=15%  Similarity=-0.015  Sum_probs=29.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR  230 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  230 (349)
                      +.|.++|.+++|+..|.......+ -+++++..-..+|.+...+..|+.=....+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            345666666666666655544331 155555555566666665555554444443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.81  E-value=32  Score=31.62  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=36.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhc--
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHA--  251 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--  251 (349)
                      ...+.-.|+++.|++.+-.  ......+.+++...+..+.-.+-.+...   ..+.... -.|...-+..+|..|.+.  
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            3455677888888888766  1222335555555444433221111111   2222111 011124566677777653  


Q ss_pred             -CChhhHHHHHHHHhhC
Q 018876          252 -GKPEKLGSVLRFIDNS  267 (349)
Q Consensus       252 -~~~~~a~~~~~~~~~~  267 (349)
                       .++..|.+.+-.+...
T Consensus       340 ~td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  340 ITDPREALQYLYLICLF  356 (613)
T ss_dssp             TT-HHHHHHHHHGGGGS
T ss_pred             ccCHHHHHHHHHHHHHc
Confidence             4566677766655543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.59  E-value=22  Score=31.83  Aligned_cols=101  Identities=22%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018876          178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL  257 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  257 (349)
                      ..+.|+++.|.++..+..      +..-|..|..+..+.+++..|.+.|.....         |..|+-.+...|+.+..
T Consensus       647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l  711 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL  711 (794)
T ss_pred             hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence            346677777777655432      566788888888888888888888876543         34555566667776655


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876          258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM  299 (349)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  299 (349)
                      ..+-....+.|. .     |...-+|...|+++++.+++..-
T Consensus       712 ~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  712 AVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence            555555555543 1     22334566778888887776543

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=84.44  E-value=19  Score=28.76  Aligned_cols=91  Identities=11%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG-  214 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-  214 (349)
                      ...=|.+++..+++.+++...-+--+.--+....+...-|-.|.+.+++..+.++-.......-.-+...|..++..|. 
T Consensus        86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence            3445788899999999887765554432233445556666778999999999998887765533334555777766654 


Q ss_pred             ----hcCChHHHHHHH
Q 018876          215 ----RAGDLKQMEYLF  226 (349)
Q Consensus       215 ----~~~~~~~a~~~~  226 (349)
                          -.|.+++|+++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence                469999999887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.04  E-value=15  Score=27.20  Aligned_cols=13  Identities=23%  Similarity=0.529  Sum_probs=5.0

Q ss_pred             CCCHHHHHHHHHH
Q 018876          305 KPDKVTYRTMVRA  317 (349)
Q Consensus       305 ~p~~~~~~~l~~~  317 (349)
                      .|+..+|+.-+..
T Consensus       110 ~P~ne~Y~ksLe~  122 (186)
T PF06552_consen  110 DPNNELYRKSLEM  122 (186)
T ss_dssp             -TT-HHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            3444444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.85  E-value=3.3  Score=22.34  Aligned_cols=16  Identities=13%  Similarity=0.339  Sum_probs=5.8

Q ss_pred             HHccCCHHHHHHHHHH
Q 018876          143 FGNSGQIDTMEKCYEK  158 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~  158 (349)
                      |...|+.+.|.+++++
T Consensus         9 yie~Gd~e~Ar~lL~e   24 (44)
T TIGR03504         9 YIEMGDLEGARELLEE   24 (44)
T ss_pred             HHHcCChHHHHHHHHH
Confidence            3333333333333333

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=83.78  E-value=65  Score=34.34  Aligned_cols=145  Identities=12%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             CCCChHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            4 KCKQPEKAHELFQAMVDEGC--DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +++.+.+|...++.-.....  .....-+..+...|+.-++++...-+...-..    .|+.  + .-+......|+++.
T Consensus      1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~-~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y-QQILEHEASGNWAD 1467 (2382)
T ss_pred             hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H-HHHHHHHhhccHHH
Confidence            34555666666665210000  01122233333467777777766665543111    1222  2 22334556778888


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhH-HHHHHHHHccCCHHHHHHHHH
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTM-NCTLRAFGNSGQIDTMEKCYE  157 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~  157 (349)
                      |...|+.+...+ ++...+++.++......+.++.+....+-..... .+....+ +.-+.+--+.++++.....+.
T Consensus      1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            888888887764 3346667777766666677766665544443332 2222222 222333345666666555544

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=83.20  E-value=12  Score=25.68  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=19.1

Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      ++.+...++.|++.....-++++-+-+++..|.++|+-++.
T Consensus        72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33333444444444444444455455555555544444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=83.01  E-value=32  Score=30.25  Aligned_cols=164  Identities=14%  Similarity=0.142  Sum_probs=78.6

Q ss_pred             chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018876          132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID  211 (349)
Q Consensus       132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  211 (349)
                      |.....+++..+..+-...-++.+..+|...|  -+...|..++.+|..+ ..+.-..+++++.+..+. |+..-..|+.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            33344455555555555555555555555543  2445555555555555 445555555555555443 3444444444


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHc
Q 018876          212 AFGRAGDLKQMEYLFRLMRSERIKP-----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGR  285 (349)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~  285 (349)
                      .|-+ ++.+.+..+|.++...-++.     -...|..+....  ..+.+....+...+.. .|...-...+.-+-..|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4433 55555555555554321110     011233322211  2344444444444432 2222233445555556666


Q ss_pred             cCChHHHHHHHHHHHhc
Q 018876          286 LKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       286 ~g~~~~a~~~~~~~~~~  302 (349)
                      ..++.+|++++..+.+.
T Consensus       218 ~eN~~eai~Ilk~il~~  234 (711)
T COG1747         218 NENWTEAIRILKHILEH  234 (711)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            66666666666655554

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=82.57  E-value=12  Score=24.90  Aligned_cols=88  Identities=11%  Similarity=0.140  Sum_probs=44.0

Q ss_pred             CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHH
Q 018876           40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL  119 (349)
Q Consensus        40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  119 (349)
                      ....++|..+.+.+...++  ....+--+.+..+.+.|++++|  + ..- .....||...|-.|-  -.+.|--+++..
T Consensus        19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--L-l~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~   90 (116)
T PF09477_consen   19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--L-LLP-QCHCYPDLEPWAALC--AWKLGLASALES   90 (116)
T ss_dssp             TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--H-HHH-TTS--GGGHHHHHHH--HHHCT-HHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--H-Hhc-ccCCCccHHHHHHHH--HHhhccHHHHHH
Confidence            3456677777777766531  2223333344566677777777  1 111 122356666665443  335666667777


Q ss_pred             HHHHHhccCCCcchhhH
Q 018876          120 TLVKMLSEDCEPDVWTM  136 (349)
Q Consensus       120 ~~~~~~~~~~~~~~~~~  136 (349)
                      .+.++..+| .|....|
T Consensus        91 ~l~rla~~g-~~~~q~F  106 (116)
T PF09477_consen   91 RLTRLASSG-SPELQAF  106 (116)
T ss_dssp             HHHHHCT-S-SHHHHHH
T ss_pred             HHHHHHhCC-CHHHHHH
Confidence            776666555 4433333

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=81.57  E-value=16  Score=25.92  Aligned_cols=50  Identities=8%  Similarity=0.087  Sum_probs=24.4

Q ss_pred             chHHHHHHHHHHhccCc-hHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018876           97 NTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS  146 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  146 (349)
                      +...|+.++.+..+... --.+..+|.-+.+.+.+++..-|..++.++.+.
T Consensus        78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen   78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence            34455555555544433 223444444444444455555555555555443

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=81.30  E-value=5.3  Score=23.50  Aligned_cols=29  Identities=17%  Similarity=0.164  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                      |..-.-.+|.+|...|++++|.++++.+.
T Consensus        22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~   50 (62)
T PF14689_consen   22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS   50 (62)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44444455666666666666666555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.27  E-value=27  Score=28.20  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhcc
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAM  344 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  344 (349)
                      +++.....|..+|.+.+|.++-+.....+ +.+...+..++..+...|+--.+.+-++.+.+.-+.-++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi  349 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGI  349 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCC
Confidence            44555566777777777777777766653 2356667777777777777666766666666554444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.06  E-value=45  Score=30.66  Aligned_cols=183  Identities=14%  Similarity=0.119  Sum_probs=105.1

Q ss_pred             HHHHHHHHHH-hcCCCCc--hhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCCCCHH-----HHHHHHHHHHhcCChh
Q 018876           10 KAHELFQAMV-DEGCDAN--TQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQPDVN-----TYSILIKSCLKAFAFD   80 (349)
Q Consensus        10 ~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~   80 (349)
                      .|++.++.+. +...+|.  ..++-.+...+. ...+++.|...+++...... .++..     +-..++..+.+.+...
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            4566666666 3334443  334555666655 77899999999998754422 22221     2234455555555544


Q ss_pred             HHHHHHHHHHhC----CCCCchHHHHHH-HHHHhccCchHHHHHHHHHHhccC---CCcchhhHHHHHHHHH--ccCCHH
Q 018876           81 KVQALLSDMSTQ----GIRPNTVTYNTL-IDAYGRAKMFAEMELTLVKMLSED---CEPDVWTMNCTLRAFG--NSGQID  150 (349)
Q Consensus        81 ~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~  150 (349)
                       |...+++.++.    +..+-...|..+ +..+...+++..|.+.++.+....   ..|...++..++.+..  +.+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             88888886654    122223334444 333334478999999888876542   2444455555555443  455566


Q ss_pred             HHHHHHHHHHhcC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 018876          151 TMEKCYEKFQSAG---------IQPSINTFNILLDSYG--KAGHFEKMSAVMEYM  194 (349)
Q Consensus       151 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~  194 (349)
                      ++.+.++.+....         ..|...+|..+++.++  ..|+++.+...++++
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777776664322         1345666766666554  567766766665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.85  E-value=13  Score=24.35  Aligned_cols=78  Identities=12%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHH
Q 018876           43 FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV  122 (349)
Q Consensus        43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  122 (349)
                      .++|..+-+.+...+  .....+--+-+..+.+.|++++|..+.+.+    ..||...|-.|-..  +.|..+++...+.
T Consensus        21 HqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~   92 (115)
T TIGR02508        21 HQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN   92 (115)
T ss_pred             HHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence            455555555555431  112222222334555666666666555444    24555555444322  4455555555555


Q ss_pred             HHhccC
Q 018876          123 KMLSED  128 (349)
Q Consensus       123 ~~~~~~  128 (349)
                      ++..+|
T Consensus        93 rla~sg   98 (115)
T TIGR02508        93 RLAASG   98 (115)
T ss_pred             HHHhCC
Confidence            555554

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.54  E-value=13  Score=28.03  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=23.8

Q ss_pred             CchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .|++.+|..++.++...|+.++|.++.+++...
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467777777777777777777777777777654

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>smart00028 TPR Tetratricopeptide repeats

Probab=80.14  E-value=3.5  Score=19.15  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=14.9

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKN   55 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   55 (349)
                      .|..+...+...|+++.|...|+...+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344455555555666666666555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-20
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 91.4 bits (225), Expect = 3e-20
 Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 3/202 (1%)

Query: 4   KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN--TPDCQP 61
                +                  Q   A       +     A  LL             
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 62  DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEM-ELT 120
            ++ Y+ ++    +  AF ++  +L  +   G+ P+ ++Y   +   GR    A   E  
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
           L +M  E  +         L     +  +  + K    F      P     + LL     
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

Query: 181 AGHFEKMSAVMEYMQKYHYSWT 202
                    +   ++     + 
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 82.6 bits (202), Expect = 2e-17
 Identities = 21/205 (10%), Positives = 59/205 (28%), Gaps = 4/205 (1%)

Query: 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY---MQKYHYSWTIV 204
            +D  +    +   A +                         ++      ++     T+ 
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166

Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK-LGSVLRF 263
            YN V+  + R G  K++ Y+  +++   + P  ++  + ++  G   +    +   L  
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226

Query: 264 IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323
           +    + L  +F   L+    R      +  V          P  V    ++R       
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286

Query: 324 KNHAKEFQDLVEKMDETCLAMKRPD 348
           +    +    ++ +          +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEKQLHME 311

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 57.5 bits (137), Expect = 3e-09
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 4/180 (2%)

Query: 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
           +  + A   P       LL         +   A      +   S                
Sbjct: 81  DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140

Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLC---SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT 273
             L    +L  +   +R K   +TL    +++  +   G  ++L  VL  + ++ +  D 
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200

Query: 274 VFFNCLVDAYGRLKCFAEM-KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332
           + +   +   GR    A   +  LE M Q G K   +    ++       +     + + 
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 2/135 (1%)

Query: 1   MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFS-LLEHMKNTPDC 59
              +    ++   +   + D G   +  S+ A L   GR           LE M      
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233

Query: 60  QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
              + T  +L     +A     V  +    S     P  V  + L+              
Sbjct: 234 LQALFTAVLL-SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292

Query: 120 TLVKMLSEDCEPDVW 134
             + + +  C  +  
Sbjct: 293 LHLPLKTLQCLFEKQ 307

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 45/321 (14%), Positives = 107/321 (33%), Gaps = 70/321 (21%)

Query: 8   PEKAHELFQAMVD--------EGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD- 58
           P++   L    +D        E    N +     LS              +     T D 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPR----RLSIIAE---------SIRDGLATWDN 346

Query: 59  -CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV--TYNTLIDAYGRAKMFA 115
               + +  + +I+S L      + + +   +S   + P +       L        + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTILL-SLIWFDVIKS 402

Query: 116 EMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172
           ++ + + K+      + +P   T   ++     S  ++   K   +        +++   
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKEST--ISI----PSIYLELKVKLENE-------YALH--R 447

Query: 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL-FRLMRS 231
            ++D Y     F+    +  Y+ +Y YS   + +++          L +M +L FR +  
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 232 ERIKPSCVTLCSL---------VRAYG-----HAGKPEKL-GSVLRFIDNSDIMLDTVFF 276
            +I+       +          ++ Y      +  K E+L  ++L F+   +  L    +
Sbjct: 506 -KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 277 NCLVDAYGRLKCFAEMKGVLE 297
             L+    R+   AE + + E
Sbjct: 565 TDLL----RIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 53/434 (12%), Positives = 114/434 (26%), Gaps = 133/434 (30%)

Query: 2   LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG----RSGLFDKAFSLLEHMKNTP 57
           L  C  PE   E+ Q +          ++T+          R          L   K   
Sbjct: 189 LKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 58  DCQPDVNTYSILI------KSCLKAFAFDKVQALL--SDMS-TQGIRPNTVTYNTLIDAY 108
           +C        +L+           AF     + LL       T  +   T T+ +L    
Sbjct: 245 NC--------LLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDH-- 293

Query: 109 GRAKMFAEME-LTL-----------------------VKMLSEDC--EPDVW-------- 134
             +      E  +L                       + +++E        W        
Sbjct: 294 -HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 135 -TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP-----SINTFNIL---LDSYGK---AG 182
             +   + +  N  +     K +++     + P          +++   +          
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
              K S V +  ++   S      +I ++   +  +   +    R +      P      
Sbjct: 410 KLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 243 SLVR-----------AYGHAGKPEKLGSV---------LRFIDNSDIMLDTVFFNC---L 279
            L+             + H    E    +          RF++   I  D+  +N    +
Sbjct: 463 DLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSI 520

Query: 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAK-----EFQDLV 334
           ++   +LK +          +   C  D   Y  +V A     +    +     ++ DL+
Sbjct: 521 LNTLQQLKFY----------KPYICDNDP-KYERLVNAILDF-LPKIEENLICSKYTDLL 568

Query: 335 EKMDETCLAMKRPD 348
                  +A+   D
Sbjct: 569 R------IALMAED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.77
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.74
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.74
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.73
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.72
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.68
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.68
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.66
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.66
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.66
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.64
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.6
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.55
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.45
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.41
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.21
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.18
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.16
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.16
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.15
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.14
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.13
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.0
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.99
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.98
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.96
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.96
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.93
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.92
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.88
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.87
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.87
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.86
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.85
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.84
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.83
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.82
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.82
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.8
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.77
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.69
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.65
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.65
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.57
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.57
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.56
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.51
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.49
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.38
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.36
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.36
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.33
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.31
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.28
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.21
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.2
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.18
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.13
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.11
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.92
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.91
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.84
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.64
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.63
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.51
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.2
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.14
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.01
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.94
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.59
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.49
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.48
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.46
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.28
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.22
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.76
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.38
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.29
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.53
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.52
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.5
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.41
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.4
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.37
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.01
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.91
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.4
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.11
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.05
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	91.95
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.58
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	91.06
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.03
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.72
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.43
2p58_C	116	Putative type III secretion protein YSCG; type III	89.15
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.03
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.74
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.47
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.99
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.57
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.24
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.85
2p58_C	116	Putative type III secretion protein YSCG; type III	82.11
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	81.8
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	80.52

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=9.6e-35  Score=248.29  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=102.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCchHHH
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH---------FEKMSAVMEYMQKYHYSWTIVTY  206 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~  206 (349)
                      ++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+.         .+.|.++|++|...|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            344444444444444444444444444444444444444444443332         44555555555555555555555


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc
Q 018876          207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL  286 (349)
Q Consensus       207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  286 (349)
                      +.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876          287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST  320 (349)
Q Consensus       287 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  320 (349)
                      |+.++|.+++++|.+.|..|+..||+.++..|..
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            5555555555555555555555555555555544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2e-34  Score=246.33  Aligned_cols=204  Identities=13%  Similarity=0.105  Sum_probs=117.1

Q ss_pred             HHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc---------hH
Q 018876           46 AFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM---------FA  115 (349)
Q Consensus        46 a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~  115 (349)
                      +..+.+.+++.. ..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+.         ++
T Consensus         9 ~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            9 SENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             HHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            334444444432 2222 234666677777777777777777777777777777777777777765443         45


Q ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876          116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ  195 (349)
Q Consensus       116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (349)
                      .|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55566666665566666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      +.|+.||..+|+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666666555556666666655555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-32  Score=243.78  Aligned_cols=236  Identities=10%  Similarity=-0.045  Sum_probs=107.6

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD  176 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  176 (349)
                      +..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  381 (597)
T 2xpi_A          304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI  381 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence            33444444444555555555555555444332 1122233333333333333333333333332221 223444555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      .|.+.|++++|..+|+++.+... .+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  459 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL  459 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence            55555555555555555544322 134455555555555555555555555554432 2344445555555555555555


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHccCchhhhHHH
Q 018876          257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD--KVTYRTMVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~  330 (349)
                      |.++|+.+.+... .+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.
T Consensus       460 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~  538 (597)
T 2xpi_A          460 ANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA  538 (597)
T ss_dssp             HHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            5555555444332 23444555555555555555555555554443    33444  34455555555555555555555


Q ss_pred             HHHHHHh
Q 018876          331 QDLVEKM  337 (349)
Q Consensus       331 ~~~~~~~  337 (349)
                      ++.+.+.
T Consensus       539 ~~~~~~~  545 (597)
T 2xpi_A          539 LNQGLLL  545 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-32  Score=244.53  Aligned_cols=329  Identities=10%  Similarity=0.019  Sum_probs=291.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHH--------------------------------------HHHHHcCCCh
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTAL--------------------------------------LSAYGRSGLF   43 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~   43 (349)
                      |.+.|++++|+++|+++.+.+ +.+...+..+                                      +..|.+.|++
T Consensus       210 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  288 (597)
T 2xpi_A          210 YTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL  288 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence            567899999999999999875 3344444433                                      4456678899


Q ss_pred             hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHH
Q 018876           44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK  123 (349)
Q Consensus        44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  123 (349)
                      ++|.++|+++.+.   +++..+++.++.++.+.|++++|..+|+++.+.+ +.+..+++.++.++.+.|++++|..++++
T Consensus       289 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (597)
T 2xpi_A          289 RRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND  364 (597)
T ss_dssp             HHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999865   5899999999999999999999999999999875 34788999999999999999999999999


Q ss_pred             HhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018876          124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI  203 (349)
Q Consensus       124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  203 (349)
                      +.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|..+|+++.+.+. .+.
T Consensus       365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~  441 (597)
T 2xpi_A          365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTH  441 (597)
T ss_dssp             HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCS
T ss_pred             HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cch
Confidence            98654 5678899999999999999999999999998864 44788999999999999999999999999988764 488


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFN  277 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~  277 (349)
                      .+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++++.+.+.    +..|+  ..+|.
T Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            999999999999999999999999998765 457889999999999999999999999998765    55677  78999


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++.+.++.+.
T Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          521 NLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999875 347899999999999999999999999999887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.98  E-value=2.7e-28  Score=204.84  Aligned_cols=325  Identities=10%  Similarity=0.038  Sum_probs=213.2

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA   84 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   84 (349)
                      .|++++|...++...+.. +.+..+|..+..++.+.|++++|.+.|+++.+..  +.+..+|..+..++.+.|++++|.+
T Consensus        46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~  122 (388)
T 1w3b_A           46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQ  122 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred             cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence            444455555554444432 3344555555555555555555555555555432  2334445555555555555555555


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018876           85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI  164 (349)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  164 (349)
                      .|+++.+.. +.+...+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.+ 
T Consensus       123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-  199 (388)
T 1w3b_A          123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-  199 (388)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence            555555542 1233344455555556666666666666665543 3344556666666666666666666666666653 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018876          165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL  244 (349)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (349)
                      +.+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus       200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  277 (388)
T 1w3b_A          200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL  277 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            234556666666666666777777766666655432 56777888888888888888888888887754 3456778888


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCch
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK  324 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  324 (349)
                      ...+...|++++|...++.+.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  355 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence            8888888888888888888877653 467788888888888899999988888888753 33577888888888899999


Q ss_pred             hhhHHHHHHHHHhHH
Q 018876          325 NHAKEFQDLVEKMDE  339 (349)
Q Consensus       325 ~~a~~~~~~~~~~~~  339 (349)
                      ++|.+.++.+.+..+
T Consensus       356 ~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          356 QEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhhCC
Confidence            999888888776544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1e-27  Score=201.28  Aligned_cols=326  Identities=11%  Similarity=-0.025  Sum_probs=286.5

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      .+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+..  +.+..+|..+..++.+.|++++|
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHH
Confidence            35799999999999998874 5567778888888999999999999999988763  67889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      ...|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.
T Consensus        87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999998863 3356689999999999999999999999998764 344566778888899999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 018876          163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC  242 (349)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  242 (349)
                      . +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..... +.+..++.
T Consensus       165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  241 (388)
T 1w3b_A          165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG  241 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence            4 446889999999999999999999999999987644 67889999999999999999999999988764 44578899


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG  322 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  322 (349)
                      .+..++...|++++|...++.+.+..+ .+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  319 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence            999999999999999999999998764 367789999999999999999999999999874 457889999999999999


Q ss_pred             chhhhHHHHHHHHHhH
Q 018876          323 MKNHAKEFQDLVEKMD  338 (349)
Q Consensus       323 ~~~~a~~~~~~~~~~~  338 (349)
                      ++++|.+.++.+.+..
T Consensus       320 ~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          320 NIEEAVRLYRKALEVF  335 (388)
T ss_dssp             CHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999876654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=4.9e-25  Score=188.66  Aligned_cols=322  Identities=10%  Similarity=-0.017  Sum_probs=255.3

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018876            9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD   88 (349)
Q Consensus         9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   88 (349)
                      ..+...+..+.... +.+...+..+...+.+.|++++|+.+|+++....  +.+..++..+..++...|++++|...|++
T Consensus         9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A            9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34455555555542 5577889999999999999999999999988753  56788999999999999999999999999


Q ss_pred             HHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch---hhHHHH------------HHHHHccCCHHHHH
Q 018876           89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCT------------LRAFGNSGQIDTME  153 (349)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~  153 (349)
                      +.+.+ +.+...+..+..+|.+.|++++|...|+++.+.. +.+.   ..+..+            ...+...|++++|.
T Consensus        86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A           86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            98875 3467888899999999999999999999998764 3333   455544            34488899999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      ..++++.+.. +.+..++..+..++.+.|++++|...|+++.+... .+..++..+...+...|++++|...++.+....
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999998874 45788899999999999999999999999887653 378899999999999999999999999998653


Q ss_pred             CCCcHHHHHHH------------HHHHHhcCChhhHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHccCChHHHHHHHHH
Q 018876          234 IKPSCVTLCSL------------VRAYGHAGKPEKLGSVLRFIDNSDIM-LD--TVFFNCLVDAYGRLKCFAEMKGVLEV  298 (349)
Q Consensus       234 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~  298 (349)
                       +.+...+..+            ...+...|++++|...++.+.+..+. +.  ..++..+...+.+.|++++|...+++
T Consensus       242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  320 (450)
T 2y4t_A          242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE  320 (450)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             3334444444            78889999999999999998875432 11  45788889999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       299 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +.... +.+...|..+..+|...|++++|.+.++.+.++.+
T Consensus       321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            88763 23688899999999999999999999998877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.6e-24  Score=185.38  Aligned_cols=302  Identities=13%  Similarity=0.032  Sum_probs=256.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.+.|++++|+.+|+.+.+.. +.+..+|..+..++...|++++|...|+++.+..  +.+..++..+..++.+.|++++
T Consensus        36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~  112 (450)
T 2y4t_A           36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDE  112 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHH
Confidence            457899999999999999873 5678899999999999999999999999998864  5678899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCch---HHHHHH------------HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018876           82 VQALLSDMSTQGIRPNT---VTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS  146 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  146 (349)
                      |...|+++.+.. +.+.   ..+..+            ...+...|++++|...++++.... +.+...+..+..+|...
T Consensus       113 A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  190 (450)
T 2y4t_A          113 AEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE  190 (450)
T ss_dssp             HHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence            999999999864 2234   555555            444888999999999999998765 55778899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH------------HHHHH
Q 018876          147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV------------IDAFG  214 (349)
Q Consensus       147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~  214 (349)
                      |++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++....+. +...+..+            ...+.
T Consensus       191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~  268 (450)
T 2y4t_A          191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELI  268 (450)
T ss_dssp             TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998864 457889999999999999999999999999876533 44555544            78899


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018876          215 RAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF  289 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  289 (349)
                      ..|++++|...++.+.+..  |+     ...+..+...+.+.|++++|...++.+.+..+ .+..+|..+..+|...|++
T Consensus       269 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~  345 (450)
T 2y4t_A          269 RDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMY  345 (450)
T ss_dssp             HHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCH
Confidence            9999999999999998753  33     34788889999999999999999999887653 3678999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 018876          290 AEMKGVLEVMQQRGCKP-DKVTYRTMV  315 (349)
Q Consensus       290 ~~a~~~~~~~~~~~~~p-~~~~~~~l~  315 (349)
                      ++|...++++.+.  .| +...+..+.
T Consensus       346 ~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          346 DEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            9999999999986  34 455565555

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.5e-24  Score=185.15  Aligned_cols=329  Identities=9%  Similarity=-0.069  Sum_probs=272.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.+.|++++|++.|+++.+.+  |+..+|..+..++...|++++|...++++.+..  +.+..++..+..++...|++++
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~   91 (514)
T 2gw1_A           16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFAD   91 (514)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHH
Confidence            456899999999999999975  789999999999999999999999999998764  5677899999999999999999


Q ss_pred             HHHHHHHHHhCCCCC-----------------------------------------------------------------
Q 018876           82 VQALLSDMSTQGIRP-----------------------------------------------------------------   96 (349)
Q Consensus        82 a~~~~~~~~~~~~~~-----------------------------------------------------------------   96 (349)
                      |...|+++...+...                                                                 
T Consensus        92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
T 2gw1_A           92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF  171 (514)
T ss_dssp             HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence            999999987764210                                                                 


Q ss_pred             -------------chHHHHHHHHHHh---ccCchHHHHHHHHHHhc-----cCC--------CcchhhHHHHHHHHHccC
Q 018876           97 -------------NTVTYNTLIDAYG---RAKMFAEMELTLVKMLS-----EDC--------EPDVWTMNCTLRAFGNSG  147 (349)
Q Consensus        97 -------------~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~  147 (349)
                                   +...+......+.   +.|++++|...++++..     ...        +.+...+..+...+...|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (514)
T 2gw1_A          172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN  251 (514)
T ss_dssp             CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence                         1222333333333   38999999999999887     311        234567888889999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 018876          148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR  227 (349)
Q Consensus       148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  227 (349)
                      ++++|...++++.+....  ...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus       252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999999887533  888889999999999999999999999887543 67889999999999999999999999


Q ss_pred             HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC-C
Q 018876          228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK-P  306 (349)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p  306 (349)
                      .+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++...... +
T Consensus       329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  406 (514)
T 2gw1_A          329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD  406 (514)
T ss_dssp             HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            998765 44567888899999999999999999999887653 36678889999999999999999999998875321 1


Q ss_pred             C----HHHHHHHHHHHHc---cCchhhhHHHHHHHHHhHH
Q 018876          307 D----KVTYRTMVRAYST---NGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       307 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~  339 (349)
                      +    ...+..+..++..   .|++++|.+.++...+..+
T Consensus       407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            1    3388889999999   9999999999998877654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=6.9e-22  Score=163.78  Aligned_cols=291  Identities=12%  Similarity=0.011  Sum_probs=140.6

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      +.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+..  +.+...+..+..++...|++++|.
T Consensus        15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~   91 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAE   91 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHH
Confidence            3455555555555555542 3344555555555555555555555555555432  234455555555555555555555


Q ss_pred             HHHHHHHhCCCC--CchHHHHHH------------HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCH
Q 018876           84 ALLSDMSTQGIR--PNTVTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI  149 (349)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  149 (349)
                      ..++++.+....  .+...+..+            ...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  170 (359)
T 3ieg_A           92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP  170 (359)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence            555555544210  122333332            244455555555555555555443 23344455555555555555


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH------------HHHHHHhcC
Q 018876          150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI------------VIDAFGRAG  217 (349)
Q Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~  217 (349)
                      ++|...++++.+.. +.+..++..+...+...|++++|...++...+.... +...+..            +...+...|
T Consensus       171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~  248 (359)
T 3ieg_A          171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDG  248 (359)
T ss_dssp             HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55555555555442 234445555555555555555555555555443321 2222221            133344555


Q ss_pred             ChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018876          218 DLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  293 (349)
                      ++++|...++.+.+... .+.    ..+..+..++...|++++|...++.+.+..+ .+..++..+...+...|++++|.
T Consensus       249 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~  326 (359)
T 3ieg_A          249 RYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAI  326 (359)
T ss_dssp             CHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence            55555555555544321 111    1123344455555555555555555544322 23445555555555555555555


Q ss_pred             HHHHHHHhc
Q 018876          294 GVLEVMQQR  302 (349)
Q Consensus       294 ~~~~~~~~~  302 (349)
                      ..|+++.+.
T Consensus       327 ~~~~~a~~~  335 (359)
T 3ieg_A          327 QDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            555555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=6.6e-22  Score=163.90  Aligned_cols=307  Identities=9%  Similarity=-0.024  Sum_probs=259.0

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      ++..+..+...+...|++++|+..|+++.+..  +.+..++..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence            46678889999999999999999999998764  5678899999999999999999999999999874 33678899999


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCC--cchhhHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCE--PDVWTMNCT------------LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF  171 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (349)
                      .++...|++++|...++++.+....  .+...+..+            ...+...|++++|.+.++++.+.. +.+...+
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  157 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR  157 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence            9999999999999999999876420  344445444            578899999999999999998875 4578889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH---------
Q 018876          172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC---------  242 (349)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------  242 (349)
                      ..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++...+.. +.+...+.         
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence            9999999999999999999999988764 378899999999999999999999999998764 23333332         


Q ss_pred             ---HHHHHHHhcCChhhHHHHHHHHhhCCCCchH----HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876          243 ---SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT----VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV  315 (349)
Q Consensus       243 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  315 (349)
                         .+...+...|++++|...++.+.+.... +.    ..+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  313 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence               2366789999999999999998876543 22    345568889999999999999999999874 23788999999


Q ss_pred             HHHHccCchhhhHHHHHHHHHhHHh
Q 018876          316 RAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .++...|++++|.+.++...++.+.
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.2e-23  Score=179.56  Aligned_cols=332  Identities=9%  Similarity=-0.029  Sum_probs=274.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCC---------------------
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ---------------------   60 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------   60 (349)
                      +.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+++....+..                     
T Consensus        49 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (514)
T 2gw1_A           49 YVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK  127 (514)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Confidence            346799999999999999875 5677899999999999999999999999987653200                     


Q ss_pred             -------------------------------------------------------C-CHHHHHHHHHHHHh---cCChhH
Q 018876           61 -------------------------------------------------------P-DVNTYSILIKSCLK---AFAFDK   81 (349)
Q Consensus        61 -------------------------------------------------------~-~~~~~~~l~~~~~~---~~~~~~   81 (349)
                                                                             | +...+......+..   .|++++
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (514)
T 2gw1_A          128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK  207 (514)
T ss_dssp             TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred             HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHH
Confidence                                                                   0 12333333333443   799999


Q ss_pred             HHHHHHHHHh-----CCC--------CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC
Q 018876           82 VQALLSDMST-----QGI--------RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ  148 (349)
Q Consensus        82 a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  148 (349)
                      |...++++.+     ...        +.+..++..+...+...|++++|...++++......  ...+..+...+...|+
T Consensus       208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~  285 (514)
T 2gw1_A          208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND  285 (514)
T ss_dssp             HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC
Confidence            9999999988     311        224567888889999999999999999999887533  8888899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876          149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL  228 (349)
Q Consensus       149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  228 (349)
                      +++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.
T Consensus       286 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~  363 (514)
T 2gw1_A          286 STEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSE  363 (514)
T ss_dssp             CTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999998874 446778899999999999999999999999887644 678899999999999999999999999


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-ch----HHHHHHHHHHHHc---cCChHHHHHHHHHHH
Q 018876          229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LD----TVFFNCLVDAYGR---LKCFAEMKGVLEVMQ  300 (349)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~  300 (349)
                      +.+.. +.+..++..+...+...|++++|...++.+.+.... ++    ...+..+...+..   .|++++|...++.+.
T Consensus       364 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~  442 (514)
T 2gw1_A          364 AKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS  442 (514)
T ss_dssp             HHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence            98764 445678889999999999999999999988764321 11    3488899999999   999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       301 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .... .+..++..+..+|...|++++|.+.++...++.+.
T Consensus       443 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  481 (514)
T 2gw1_A          443 KLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART  481 (514)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence            8742 36788899999999999999999999988887653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=2.8e-22  Score=175.36  Aligned_cols=330  Identities=8%  Similarity=-0.011  Sum_probs=252.6

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.+.|++++|++.|+++.+.. +.++.+|..+..++...|++++|++.|+++.+..  +.+..++..+..++...|++++
T Consensus        35 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~  111 (537)
T 3fp2_A           35 FFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTD  111 (537)
T ss_dssp             HHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHH
Confidence            346789999999999998874 5678889999999999999999999999988764  5677888888899999999888


Q ss_pred             HHHHHHHHHhC---------------------------------------------------------------------
Q 018876           82 VQALLSDMSTQ---------------------------------------------------------------------   92 (349)
Q Consensus        82 a~~~~~~~~~~---------------------------------------------------------------------   92 (349)
                      |...|+.+...                                                                     
T Consensus       112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (537)
T 3fp2_A          112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT  191 (537)
T ss_dssp             HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence            88777432100                                                                     


Q ss_pred             --------------------------------------CCCCc--------hHHHHHHHHHHhccCchHHHHHHHHHHhc
Q 018876           93 --------------------------------------GIRPN--------TVTYNTLIDAYGRAKMFAEMELTLVKMLS  126 (349)
Q Consensus        93 --------------------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  126 (349)
                                                            ...|+        ..++..+...+...|++++|...++++..
T Consensus       192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~  271 (537)
T 3fp2_A          192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN  271 (537)
T ss_dssp             SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence                                                  01111        12344455566677788888888888876


Q ss_pred             cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 018876          127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY  206 (349)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  206 (349)
                      ..  |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+
T Consensus       272 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~  347 (537)
T 3fp2_A          272 LH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY  347 (537)
T ss_dssp             HC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred             cC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence            63  446777788888888888888888888888764 346778888888888999999999999888876533 56788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-----CchHHHHHHHHH
Q 018876          207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI-----MLDTVFFNCLVD  281 (349)
Q Consensus       207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~  281 (349)
                      ..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+...     ......+.....
T Consensus       348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~  426 (537)
T 3fp2_A          348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT  426 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence            888888889999999999998887764 44567788888888999999999998888765321     112233445556


Q ss_pred             HHHcc----------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          282 AYGRL----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       282 ~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .+...          |++++|...++++.+... .+...+..+..+|...|++++|.+.++...++.++
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            67777          999999999999888743 36788999999999999999999999988887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=6.9e-22  Score=161.91  Aligned_cols=295  Identities=9%  Similarity=-0.059  Sum_probs=248.1

Q ss_pred             CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH
Q 018876           23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN  102 (349)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  102 (349)
                      .+.+...+..+...+...|++++|.++|+++.+..  +.+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~   94 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF   94 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence            35677888899999999999999999999998764  4556677778888999999999999999998874 44678889


Q ss_pred             HHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          103 TLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       103 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                      .+...+...| ++++|...+++..... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            9999999999 9999999999998765 4457788999999999999999999999998875 33566777799999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHhcCC
Q 018876          182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER--------IKPSCVTLCSLVRAYGHAGK  253 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~  253 (349)
                      |++++|...++++.+.... +...+..+...+...|++++|...++++.+..        .+....++..+...+...|+
T Consensus       173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999887643 68889999999999999999999999987531        13345788999999999999


Q ss_pred             hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCchh
Q 018876          254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKN  325 (349)
Q Consensus       254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~  325 (349)
                      +++|...++.+.+... .+...+..+...|.+.|++++|...+++..+... .+...+..+..++ ...|+.+
T Consensus       252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence            9999999999987654 3678899999999999999999999999887642 2677788888777 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.91  E-value=7.9e-22  Score=164.18  Aligned_cols=295  Identities=11%  Similarity=-0.066  Sum_probs=231.0

Q ss_pred             HHcCCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876           37 YGRSGLFDKAFS-LLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM  113 (349)
Q Consensus        37 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (349)
                      +...|++++|.+ .|++........|  +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            445578889988 8887665432222  34567788889999999999999999999874 4477888899999999999


Q ss_pred             hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHH
Q 018876          114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI---------------LLDSY  178 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~  178 (349)
                      +++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            999999999998775 557788899999999999999999999999886432 2222221               23344


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL  257 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  257 (349)
                      ...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence            48899999999999998875332 57889999999999999999999999998764 45678899999999999999999


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHccCchhhh
Q 018876          258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP----------DKVTYRTMVRAYSTNGMKNHA  327 (349)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a  327 (349)
                      ...++.+.+..+ .+..++..+...|.+.|++++|...|+++.......          ...+|..+..+|...|+++.|
T Consensus       271 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          271 VAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            999999987653 467889999999999999999999999988763221          168899999999999999999


Q ss_pred             HHHHHHHHH
Q 018876          328 KEFQDLVEK  336 (349)
Q Consensus       328 ~~~~~~~~~  336 (349)
                      ..+++...+
T Consensus       350 ~~~~~~~l~  358 (368)
T 1fch_A          350 GAADARDLS  358 (368)
T ss_dssp             HHHHTTCHH
T ss_pred             HHhHHHHHH
Confidence            998774443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.90  E-value=9.2e-21  Score=155.21  Aligned_cols=280  Identities=7%  Similarity=-0.083  Sum_probs=238.7

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDK   81 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~   81 (349)
                      ...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+..  +.+...+..+...+...| ++++
T Consensus        33 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~  109 (330)
T 3hym_B           33 YYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEH  109 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHH
Confidence            35699999999999999874 5567788888899999999999999999998863  557788999999999999 9999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      |...+++..... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus       110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  187 (330)
T 3hym_B          110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS  187 (330)
T ss_dssp             HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999998874 3467789999999999999999999999998775 44566777799999999999999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      .. +.+...+..+...+...|++++|...++++.+..        .+.....+..+...+...|++++|...+++..+..
T Consensus       188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            75 4578889999999999999999999999887642        13346789999999999999999999999998765


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH-HccCChH
Q 018876          234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFA  290 (349)
Q Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~  290 (349)
                       +.+...+..+...+...|++++|...++.+.+..+ .+...+..+..++ ...|+.+
T Consensus       267 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          267 -PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             -TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred             -ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence             44678899999999999999999999999988754 3677888888877 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.90  E-value=3.6e-21  Score=160.18  Aligned_cols=288  Identities=8%  Similarity=-0.073  Sum_probs=231.0

Q ss_pred             CCChHHHHH-HHHHHHhcCC-CC--chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018876            5 CKQPEKAHE-LFQAMVDEGC-DA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD   80 (349)
Q Consensus         5 ~g~~~~A~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (349)
                      .|++++|.+ .|++..+... .|  +...+..+...+...|++++|...|+++.+..  +.+..++..+..++...|+++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence            466777776 6665444311 11  35678899999999999999999999999874  567889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH---------------HHHHHHc
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC---------------TLRAFGN  145 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~  145 (349)
                      +|...++++.+.. +.+..++..+..++...|++++|...++++...... +...+..               .+..+..
T Consensus       116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            9999999999875 447889999999999999999999999999876422 2222221               2334448


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 018876          146 SGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY  224 (349)
Q Consensus       146 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  224 (349)
                      .|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|..
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            899999999999998874322 588899999999999999999999999988753 367899999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc----------hHHHHHHHHHHHHccCChHHHHH
Q 018876          225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML----------DTVFFNCLVDAYGRLKCFAEMKG  294 (349)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~  294 (349)
                      .++++.+.. +.+..++..+..++...|++++|...++.+.+..+..          ...+|..+..+|...|++++|..
T Consensus       273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            999998764 4567889999999999999999999999887643221          26789999999999999999998


Q ss_pred             HHHH
Q 018876          295 VLEV  298 (349)
Q Consensus       295 ~~~~  298 (349)
                      ++++
T Consensus       352 ~~~~  355 (368)
T 1fch_A          352 ADAR  355 (368)
T ss_dssp             HHTT
T ss_pred             hHHH
Confidence            8764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=1.4e-19  Score=158.29  Aligned_cols=307  Identities=9%  Similarity=-0.009  Sum_probs=247.1

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      ....|..+...+.+.|++++|++.|+++....  +.+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence            35678888999999999999999999998864  5688999999999999999999999999999875 44778899999


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCC------------------------------------cchh---------------
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCE------------------------------------PDVW---------------  134 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~---------------  134 (349)
                      .++...|++++|...|+.+......                                    |+..               
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV  180 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence            9999999999999998644211100                                    0000               


Q ss_pred             ---------------hHHHHHHHHHc--------cCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCH
Q 018876          135 ---------------TMNCTLRAFGN--------SGQIDTMEKCYEKFQSAGIQPS-------INTFNILLDSYGKAGHF  184 (349)
Q Consensus       135 ---------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~  184 (349)
                                     ....+...+..        .|++++|..+++++.+.... +       ..++..+...+...|++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccH
Confidence                           11111111111        14788899999998876422 3       23466677788899999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      ++|...++++.+..  |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+
T Consensus       260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999998875  458888999999999999999999999998765 456788999999999999999999999999


Q ss_pred             hhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018876          265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC  341 (349)
Q Consensus       265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  341 (349)
                      .+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+..+..
T Consensus       337 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          337 QSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            88654 356788999999999999999999999999874 3357789999999999999999999999988877543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=2.9e-21  Score=160.69  Aligned_cols=267  Identities=8%  Similarity=-0.100  Sum_probs=216.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018876           62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR  141 (349)
Q Consensus        62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  141 (349)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44568888899999999999999999998874 4478889999999999999999999999998765 456788999999


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPS----------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVI  210 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  210 (349)
                      .|...|++++|...++++.+... .+          ...+..+...+...|++++|...++++.+..+. ++..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999887531 11          223344577888999999999999999887533 1678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876          211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA  290 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  290 (349)
                      ..+...|++++|...++++.+.. +.+..++..+..++...|++++|...++.+.+..+ .+..++..+..+|.+.|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence            99999999999999999998764 55678999999999999999999999999988754 35888999999999999999


Q ss_pred             HHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876          291 EMKGVLEVMQQRGCK-----------PDKVTYRTMVRAYSTNGMKNHAKEFQDL  333 (349)
Q Consensus       291 ~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~  333 (349)
                      +|...|+++.+....           .+...|..+..++...|+.+.+.++.+.
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999998876211           1367899999999999999888776554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=3e-20  Score=154.48  Aligned_cols=267  Identities=7%  Similarity=-0.065  Sum_probs=221.0

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      +...+..+...+.+.|++++|...|+++.+..  +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            45568899999999999999999999998864  5678899999999999999999999999999874 44688999999


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchh----------hHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVW----------TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNIL  174 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l  174 (349)
                      .+|...|++++|...++++.+.. +.+..          .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            99999999999999999998753 22222          2334578899999999999999999987532 168899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP  254 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  254 (349)
                      ...+...|++++|...++++.+..+. +..+|..+..++...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            99999999999999999999887643 78899999999999999999999999998764 45578899999999999999


Q ss_pred             hhHHHHHHHHhhCCCC-----------chHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876          255 EKLGSVLRFIDNSDIM-----------LDTVFFNCLVDAYGRLKCFAEMKGVLEV  298 (349)
Q Consensus       255 ~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~  298 (349)
                      ++|...++.+.+....           .+..+|..+..++...|+.+.+..+.++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999988754211           1367899999999999999988877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=1.1e-19  Score=148.48  Aligned_cols=265  Identities=5%  Similarity=-0.085  Sum_probs=168.8

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      +...+..+...+...|++++|..+|+++.+..  +.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence            45567788888999999999999999988753  4577888888899999999999999999988874 44677888888


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT--------------LR-AFGNSGQIDTMEKCYEKFQSAGIQPSINT  170 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (349)
                      ..+...|++++|.+.++++.... +.+...+..+              .. .+...|++++|.+.++++.+.. +.+...
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  174 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL  174 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence            89999999999999999888663 2223333322              11 2555566666666666666553 225555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      +..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            66666666666666666666666655432 245555555566666666666666666555432 2334455555555555


Q ss_pred             cCChhhHHHHHHHHhhCCCCc-----------hHHHHHHHHHHHHccCChHHHHHHHH
Q 018876          251 AGKPEKLGSVLRFIDNSDIML-----------DTVFFNCLVDAYGRLKCFAEMKGVLE  297 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~  297 (349)
                      .|++++|...++.+.+.....           +...|..+..++.+.|++++|..+++
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            555555555555554432211           34455555555555555555555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=1.9e-19  Score=147.12  Aligned_cols=274  Identities=6%  Similarity=-0.075  Sum_probs=226.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018876           62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR  141 (349)
Q Consensus        62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  141 (349)
                      +...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            33456677888999999999999999998874 3477888899999999999999999999998875 556788889999


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL--------------LD-SYGKAGHFEKMSAVMEYMQKYHYSWTIVTY  206 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  206 (349)
                      .+...|++++|.+.++++.+.... +...+..+              .. .+...|++++|...++++.+.... +...+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  175 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH  175 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence            999999999999999999876422 33333333              22 367788999999999999887643 78899


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc
Q 018876          207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL  286 (349)
Q Consensus       207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  286 (349)
                      ..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+... .+...+..+...|...
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence            999999999999999999999998764 45678899999999999999999999999887653 3678899999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018876          287 KCFAEMKGVLEVMQQRGCKP-----------DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC  341 (349)
Q Consensus       287 g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  341 (349)
                      |++++|...++++.......           +...|..+..++...|++++|..+++...+..+..
T Consensus       254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            99999999999998764321           47789999999999999999999887655554433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.85  E-value=1.8e-20  Score=153.69  Aligned_cols=284  Identities=13%  Similarity=0.115  Sum_probs=135.7

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +-+.|++++|.+.++++.      ++.+|..++.++.+.|++++|++.|.+       .+|..+|..++.++...|++++
T Consensus        13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHH
Confidence            456788999999999982      335999999999999999999999964       3567799999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      |...++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|..+|..+  
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            99988777764  4567889999999999999999887774       367779999999999999999999999976  


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL  241 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (349)
                             ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.   ..|  .-.
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l  210 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DEL  210 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHH
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhH
Confidence                   36899999999999999999999988      278999999999999999999966555422   234  345


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--CChHHHHHHHHHHHhcCCCC------CHHHHHH
Q 018876          242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRT  313 (349)
Q Consensus       242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~  313 (349)
                      ..++..|.+.|.+++|..+++...... +-....|+.+..+|++-  ++..+.++.|..  +.+++|      +...|..
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence            578899999999999999999998776 45778888888888774  344445544431  223333      4667888


Q ss_pred             HHHHHHccCchhhhHHH
Q 018876          314 MVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       314 l~~~~~~~g~~~~a~~~  330 (349)
                      +...|.+.++++.|...
T Consensus       288 ~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhhchHHHHHHH
Confidence            88899999999887763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=2.5e-18  Score=137.66  Aligned_cols=251  Identities=12%  Similarity=0.083  Sum_probs=177.5

Q ss_pred             HHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018876           35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK  112 (349)
Q Consensus        35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (349)
                      .-....|+++.|+..++.....   .|+.  .....+.+++...|+++.|...++.    .-+|+..++..+...+...+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            3345678888888887776543   3333  3445567788888888888765543    13556777777778888888


Q ss_pred             chHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018876          113 MFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM  191 (349)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  191 (349)
                      +.++|.+.++++...+..| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.|++++|...+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8888888888877665434 445556666778888888888888776      456777778888888888888888888


Q ss_pred             HHHHhcCCCCchHHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          192 EYMQKYHYSWTIVTY---NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       192 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      +++.+..  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+..
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8887764  332211   122333445578888888888887763 5677778888888888888888888888877765


Q ss_pred             CCchHHHHHHHHHHHHccCChHH-HHHHHHHHHhc
Q 018876          269 IMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR  302 (349)
Q Consensus       269 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~  302 (349)
                      + -++.++..++..+...|+.++ +.++++++.+.
T Consensus       231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            4 366777778888888888765 56778877776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=3.1e-18  Score=137.15  Aligned_cols=255  Identities=8%  Similarity=0.062  Sum_probs=206.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018876           70 IKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG  147 (349)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (349)
                      ++-....|+++.|+..++.....  .|+.  .....+.++|...|+++.|...++.    ..+|+..++..+...+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            34456789999999988876544  3443  3556678999999999999986654    23677888899999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 018876          148 QIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF  226 (349)
Q Consensus       148 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  226 (349)
                      +.++|.+.++++...+..| +...+..+...+...|++++|...+++      +.+...+..++..+.+.|++++|...+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998876444 566777788999999999999999987      357889999999999999999999999


Q ss_pred             HHHHhCCCCCcHHHH---HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          227 RLMRSERIKPSCVTL---CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       227 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      +.+.+..  |+....   ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|++.....
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9998764  443211   2233444456899999999999988753 588899999999999999999999999999875


Q ss_pred             CCCCHHHHHHHHHHHHccCchhh-hHHHHHHHHHhHHh
Q 018876          304 CKPDKVTYRTMVRAYSTNGMKNH-AKEFQDLVEKMDET  340 (349)
Q Consensus       304 ~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~  340 (349)
                      . -+..++..++..+...|+.++ +.++++.+.+..+.
T Consensus       231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            3 378899999999999999876 57888888776653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=6.9e-16  Score=133.29  Aligned_cols=305  Identities=11%  Similarity=-0.023  Sum_probs=170.0

Q ss_pred             CChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cC
Q 018876            6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AF   77 (349)
Q Consensus         6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~   77 (349)
                      +++++|.+.|++..+.|   ++..+..|...|..    .+++++|.+.|++....    -+...+..+...+..    .+
T Consensus        93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~  165 (490)
T 2xm6_A           93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTR  165 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence            34444444444444432   33333444444443    34444444444444332    123334444444443    34


Q ss_pred             ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCH
Q 018876           78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQI  149 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~  149 (349)
                      ++++|.+.|++..+.|   +...+..+...|..    .++.++|.+.|++..+.+   +...+..+...|..    .+++
T Consensus       166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~  239 (490)
T 2xm6_A          166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY  239 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence            4444444444444432   33444444444443    445555555555544432   22333444444443    4555


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-----CChH
Q 018876          150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-----GDLK  220 (349)
Q Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~  220 (349)
                      ++|..+|++..+.|   +...+..+...+..    .++.++|...|++..+.+   +...+..+...+...     ++++
T Consensus       240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~  313 (490)
T 2xm6_A          240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE  313 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence            55555555555443   33344445555555    566666666666665543   344555555666555     6777


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc----cCChHHHH
Q 018876          221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMK  293 (349)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  293 (349)
                      +|...+++..+.+   +...+..+...+...|   ++++|...++...+.+   ++..+..+...|..    .+++++|.
T Consensus       314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~  387 (490)
T 2xm6_A          314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA  387 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            7777777766654   2345555666665544   5677777777776653   45667777777777    78888888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHHHHHhH
Q 018876          294 GVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  338 (349)
                      ..|++..+.|   +...+..+...|..    .++.++|.+.++...+.+
T Consensus       388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            8888888765   56677777777777    788888888888877766

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=7e-16  Score=133.26  Aligned_cols=305  Identities=13%  Similarity=0.049  Sum_probs=252.6

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----c
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----A   76 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~   76 (349)
                      .+++++|.+.|++..+.|   ++.++..|...|..    .+++++|.+.|++..+.    .+...+..+...+..    .
T Consensus        56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~  128 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVK  128 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred             CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence            689999999999998865   67788888888888    89999999999998875    366777788888888    7


Q ss_pred             CChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCC
Q 018876           77 FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQ  148 (349)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~  148 (349)
                      +++++|..+|++..+.|   +...+..|...|..    .+++++|.+.|++..+.+   +...+..+...|..    .++
T Consensus       129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  202 (490)
T 2xm6_A          129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN  202 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence            89999999999998876   56677778888876    789999999999998765   56677778888877    899


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChH
Q 018876          149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLK  220 (349)
Q Consensus       149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  220 (349)
                      .++|.++|++..+.|   +...+..+...|..    .++.++|...|++..+.+   +...+..+...+..    .++++
T Consensus       203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~  276 (490)
T 2xm6_A          203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL  276 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence            999999999988875   56677778887876    789999999999988765   45667777777777    88999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC---ChHHH
Q 018876          221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEM  292 (349)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a  292 (349)
                      +|...|+...+.+   +...+..+...+...     +++++|...++...+.+   +...+..+...|...|   ++++|
T Consensus       277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A  350 (490)
T 2xm6_A          277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA  350 (490)
T ss_dssp             HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence            9999999988764   345667777778776     89999999999998875   4456777888887756   78999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHHHHHh
Q 018876          293 KGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       293 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~  337 (349)
                      .+.|++..+.|   +...+..+...|..    .+++++|.+.+++..+.
T Consensus       351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            99999999874   67888888888888    88999999999887664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=1.1e-15  Score=133.30  Aligned_cols=329  Identities=9%  Similarity=0.062  Sum_probs=180.6

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC-LKAFAFDKV   82 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a   82 (349)
                      +.|++++|..+|+++.+. .|.+...|...+..+.+.|++++|..+|+++...   .|+...|...+... ...|+.+.|
T Consensus        24 ~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a   99 (530)
T 2ooe_A           24 QNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSY   99 (530)
T ss_dssp             HSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred             HhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhH
Confidence            468899999999999886 3567788999999999999999999999999876   46766666555322 223444433


Q ss_pred             HH----HHHHHHhC-CCCC-chHHHHHHHHHHhc---------cCchHHHHHHHHHHhccC-------------------
Q 018876           83 QA----LLSDMSTQ-GIRP-NTVTYNTLIDAYGR---------AKMFAEMELTLVKMLSED-------------------  128 (349)
Q Consensus        83 ~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~-------------------  128 (349)
                      .+    +|+..... |..| +...|...+....+         .|+++.|..+|++..+..                   
T Consensus       100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~  179 (530)
T 2ooe_A          100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN  179 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence            32    44433321 2222 22333333332221         334444444444333210                   


Q ss_pred             --------------------------------------C-----------------------------------------
Q 018876          129 --------------------------------------C-----------------------------------------  129 (349)
Q Consensus       129 --------------------------------------~-----------------------------------------  129 (349)
                                                            +                                         
T Consensus       180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~  259 (530)
T 2ooe_A          180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF  259 (530)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence                                                  0                                         


Q ss_pred             ---------CcchhhHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018876          130 ---------EPDVWTMNCTLRAFGN-------SGQID-------TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       130 ---------~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (349)
                               +.+...|......+.+       .|+++       +|..++++..+.-.+.+...|..++..+.+.|++++
T Consensus       260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~  339 (530)
T 2ooe_A          260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK  339 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence                     1112222222222322       35544       555556555542122345556666666666666666


Q ss_pred             HHHHHHHHHhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCChhhHHHHHHHH
Q 018876          187 MSAVMEYMQKYHYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       187 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~  264 (349)
                      |..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|++++|..+|+..
T Consensus       340 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a  417 (530)
T 2ooe_A          340 VHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG  417 (530)
T ss_dssp             HHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            66666666554321 2 2355555555556666666666666665432 1122222221111 22466666677666666


Q ss_pred             hhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      .+..+ -++..|..++..+.+.|+.++|..+|++....+. .|+  ...|...+......|+.+.+..+.++..+..+
T Consensus       418 l~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          418 LKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            55432 2456666677777777777777777777766532 222  33566666666666777777776666655544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=160.48  Aligned_cols=115  Identities=12%  Similarity=0.275  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018876          168 INTFNILLDSYGKAGHFEKMSAVMEYMQ---KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL  244 (349)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (349)
                      ..+|+++|++|++.|++++|..+|++|.   ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3345555555555555555555554443   2344555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCh-hhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          245 VRAYGHAGKP-EKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       245 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      |.++++.|+. ++|.+++++|.+.|+.||..+|+.++.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~  245 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE  245 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence            5555555542 4455555555555555555555555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=6.7e-20  Score=162.33  Aligned_cols=135  Identities=14%  Similarity=0.129  Sum_probs=119.2

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC  278 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  278 (349)
                      -..+|+++|.+|++.|++++|..+|..|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            467999999999999999999999988764   58899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhc
Q 018876          279 LVDAYGRLKCF-AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA  343 (349)
Q Consensus       279 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  343 (349)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.       .+++.++++.+...+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p  264 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSL  264 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCC
Confidence            99999999985 78999999999999999999999998655443       455555666544333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.9e-16  Score=136.21  Aligned_cols=334  Identities=8%  Similarity=-0.061  Sum_probs=226.7

Q ss_pred             CCCCCChHHHHHHHHHHHhc--------CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC----C-CC-CCCHHHHH
Q 018876            2 LGKCKQPEKAHELFQAMVDE--------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT----P-DC-QPDVNTYS   67 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~-~~~~~~~~   67 (349)
                      +...|+.++|++.|++..+.        ..+....+|+.+..+|...|++++|...+++....    . .. .....++.
T Consensus        61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~  140 (472)
T 4g1t_A           61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC  140 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence            34679999999999886642        12234567999999999999999999999877542    1 11 22356676


Q ss_pred             HHHHHHHhc--CChhHHHHHHHHHHhCCCCCchHHHHHHHHHH---hccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876           68 ILIKSCLKA--FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA  142 (349)
Q Consensus        68 ~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  142 (349)
                      .+..++...  +++++|...|++..+.. +-+...+..+..++   ...++.++|++.+++..+.. +.+...+..+...
T Consensus       141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~  218 (472)
T 4g1t_A          141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALK  218 (472)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence            666666554  57899999999998864 22455555555443   34567788888888887664 3445555555444


Q ss_pred             HH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc--
Q 018876          143 FG----NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA--  216 (349)
Q Consensus       143 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  216 (349)
                      +.    ..+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+..+. +..++..+...|...  
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~  296 (472)
T 4g1t_A          219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF  296 (472)
T ss_dssp             HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence            43    4567889999999988875 457788899999999999999999999999887644 566676666555332  


Q ss_pred             -----------------CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH--HHH
Q 018876          217 -----------------GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV--FFN  277 (349)
Q Consensus       217 -----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~  277 (349)
                                       +..+.|...++...+.. +.+..++..+...+...|++++|...|+++.+....+...  .+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~  375 (472)
T 4g1t_A          297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL  375 (472)
T ss_dssp             HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence                             23566777787776654 4456778889999999999999999999998776544322  233


Q ss_pred             HHHH-HHHccCChHHHHHHHHHHHhcCC-----------------------CCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876          278 CLVD-AYGRLKCFAEMKGVLEVMQQRGC-----------------------KPDKVTYRTMVRAYSTNGMKNHAKEFQDL  333 (349)
Q Consensus       278 ~li~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  333 (349)
                      .+.. .+...|++++|+..|++......                       +.+..+|..+..+|...|++++|.+.+++
T Consensus       376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k  455 (472)
T 4g1t_A          376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER  455 (472)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3332 34578899999998887765421                       23567899999999999999999999999


Q ss_pred             HHHhHHh
Q 018876          334 VEKMDET  340 (349)
Q Consensus       334 ~~~~~~~  340 (349)
                      ..++.+.
T Consensus       456 ALe~~~~  462 (472)
T 4g1t_A          456 GLESGSL  462 (472)
T ss_dssp             -------
T ss_pred             HHhcCCC
Confidence            8877653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2e-16  Score=124.66  Aligned_cols=224  Identities=12%  Similarity=-0.032  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCC--Ccc----hhhHHH
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPD----VWTMNC  138 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~  138 (349)
                      .+..+...+...|++++|...+++..+..  .+...+..+..++...|++++|...+++..+...  .++    ...+..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34444444555555555555555554443  3444455555555555555555555554443210  001    344555


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876          139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (349)
                      +...+...|++++|...++++.+..  |+.       ..+...|++++|...++.+...... +...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence            5555555555555555555555532  221       2344445566666666665554322 44555556666666666


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876          219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV  298 (349)
Q Consensus       219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  298 (349)
                      +++|...++++.+.. +.+..++..+...+...|++++|...++.+.+..+ .+...|..+...+...|++++|...+++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            666666666665543 33455566666666666666666666666655442 2455566666666666666666666666


Q ss_pred             HHhc
Q 018876          299 MQQR  302 (349)
Q Consensus       299 ~~~~  302 (349)
                      ..+.
T Consensus       233 a~~~  236 (258)
T 3uq3_A          233 ARTK  236 (258)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=8.8e-17  Score=123.18  Aligned_cols=199  Identities=13%  Similarity=0.011  Sum_probs=125.5

Q ss_pred             CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH
Q 018876           24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT  103 (349)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  103 (349)
                      |++...+..+...+.+.|++++|...|++..+..  +.+...+..+..++.+.|++++|...+++..+.. +.+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            5677788888888888888888888888888764  5677888888888888888888888888888764 335667777


Q ss_pred             HHHHHhcc-----------CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018876          104 LIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN  172 (349)
Q Consensus       104 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (349)
                      +..++...           |++++|...+++..+.. +.+...+..+..++...|++++|...|++..+..  .+...+.
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence            77777777           66666666666665543 2344555556666666666666666666666554  4555566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876          173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  229 (349)
                      .+..++...|++++|...+++..+..+. +...+..+...+...|++++|...+++.
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6666666666666666666666555422 4555555556666666666666655543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=3.4e-18  Score=140.33  Aligned_cols=251  Identities=13%  Similarity=0.136  Sum_probs=111.3

Q ss_pred             cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHH
Q 018876           39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME  118 (349)
Q Consensus        39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  118 (349)
                      +.|++++|.++++++.     .|  .+|..++.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|.
T Consensus        15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            6788999999999882     23  48999999999999999999999653      47779999999999999999999


Q ss_pred             HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                      ..++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            988777764  4557888999999999999999988884       367789999999999999999999999976    


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876          199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC  278 (349)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  278 (349)
                           ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+.     .++.....
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~  212 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE  212 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence                 57999999999999999999999988      267999999999999999999966554322     23334557


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL  333 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  333 (349)
                      ++..|.+.|++++|..+++...... +-....|..+.-+|++-+ ++...+.++.
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~  265 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLEL  265 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence            9999999999999999999988664 335667777776776653 4444444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2e-16  Score=124.62  Aligned_cols=230  Identities=13%  Similarity=0.007  Sum_probs=197.8

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CC----HHH
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ--PS----INT  170 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~  170 (349)
                      ....+..+...+...|++++|...+++..+..  .+...+..+..++...|++++|.+.+++..+....  ++    ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            34678888899999999999999999999887  77889999999999999999999999998875311  12    578


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      +..+...+...|++++|...++++.+..  |+.       ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence            8899999999999999999999998865  342       34667788999999999998754 4456788889999999


Q ss_pred             cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876          251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF  330 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  330 (349)
                      .|++++|...++.+.+... .+..++..+...|...|++++|...+++..+... .+...|..+..++...|++++|.+.
T Consensus       152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999988764 3678899999999999999999999999998742 3688899999999999999999999


Q ss_pred             HHHHHHhHHh
Q 018876          331 QDLVEKMDET  340 (349)
Q Consensus       331 ~~~~~~~~~~  340 (349)
                      ++...++.+.
T Consensus       230 ~~~a~~~~~~  239 (258)
T 3uq3_A          230 LDAARTKDAE  239 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhChh
Confidence            9999888743

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.77  E-value=1.4e-16  Score=122.01  Aligned_cols=112  Identities=10%  Similarity=-0.068  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876          182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL  261 (349)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  261 (349)
                      |++++|...+++..+..+. +...+..+...+...|++++|...+++..+..  .+...+..+..++...|++++|...+
T Consensus        98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444444444444333221 23333333444444444444444444443333  23333334444444444444444444


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018876          262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE  297 (349)
Q Consensus       262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  297 (349)
                      +.+.+..+ .+...+..+...+...|++++|...++
T Consensus       175 ~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          175 AKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred             HHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            44333321 123333334444444444444444333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=3.7e-16  Score=124.35  Aligned_cols=223  Identities=9%  Similarity=-0.085  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876           99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY  178 (349)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (349)
                      .++..+..++...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~  121 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence            334444444444444444444444444432 2234444445555555555555555555554442 22344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG  258 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  258 (349)
                      ...|++++|...++++.+..  |+.......+..+...|++++|...++...... +++...+ .++..+...++.++|.
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~  197 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLM  197 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHH
Confidence            55555555555555555433  222222223333344456666666665554432 2222222 2444555555666666


Q ss_pred             HHHHHHhhCCCCc---hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHH
Q 018876          259 SVLRFIDNSDIML---DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       259 ~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                      ..+..........   +...+..+...|.+.|++++|...|++.....  |+.  +.....++...|++++|.+.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            6666555432110   14566777777777777777777777777653  322  222344556667777766654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.75  E-value=9.2e-16  Score=121.90  Aligned_cols=164  Identities=7%  Similarity=-0.057  Sum_probs=75.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR  215 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (349)
                      |..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|...+++..+..+ .+...+..+...+..
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence            3344444444444444444444444432 12334444444455555555555555544444321 133344444412222


Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCC-CCch------HHHHHHHHHHHHc
Q 018876          216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSD-IMLD------TVFFNCLVDAYGR  285 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~  285 (349)
                      .+++++|...++++.+.. +.+...+..+...+...|+   +++|...++.+.+.. ..|+      ..+|..+...|..
T Consensus       155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            335555555555554432 2223444444444544454   444555554443321 0011      2355556666666


Q ss_pred             cCChHHHHHHHHHHHhc
Q 018876          286 LKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       286 ~g~~~~a~~~~~~~~~~  302 (349)
                      .|++++|...+++..+.
T Consensus       234 ~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          234 NRDKVKADAAWKNILAL  250 (272)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            66666666666666655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=3.1e-14  Score=124.22  Aligned_cols=141  Identities=12%  Similarity=0.129  Sum_probs=97.5

Q ss_pred             HHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 018876           15 FQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI   94 (349)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   94 (349)
                      |++..+.. |-+...|..++.. .+.|++++|..+|+++.+..  |.+...|...+..+.+.|++++|..+|+++...  
T Consensus         2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--   75 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--   75 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred             hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence            45555543 5578899999984 78999999999999999863  567788999999999999999999999999987  


Q ss_pred             CCchHHHHHHHHHH-hccCchHHHHH----HHHHHhcc-CCCc-chhhHHHHHHHHHc---------cCCHHHHHHHHHH
Q 018876           95 RPNTVTYNTLIDAY-GRAKMFAEMEL----TLVKMLSE-DCEP-DVWTMNCTLRAFGN---------SGQIDTMEKCYEK  158 (349)
Q Consensus        95 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~  158 (349)
                      .|+...|..++... ...|+.++|.+    +|++.... |..| +...|...+.....         .|+++.|..+|++
T Consensus        76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~  155 (530)
T 2ooe_A           76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR  155 (530)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence            36777777776533 33455555444    66655432 3222 34455554444332         4555566655555


Q ss_pred             HHh
Q 018876          159 FQS  161 (349)
Q Consensus       159 ~~~  161 (349)
                      ..+
T Consensus       156 al~  158 (530)
T 2ooe_A          156 GCV  158 (530)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.74  E-value=2e-15  Score=119.97  Aligned_cols=239  Identities=12%  Similarity=-0.033  Sum_probs=192.0

Q ss_pred             hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 018876           98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP--SINTFNILL  175 (349)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  175 (349)
                      ...+......+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.+..+  ....|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3455667778888999999999999988764 3455678888889999999999999999988843222  234588899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  255 (349)
                      ..+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887644 67899999999999999999999999987763 455677777773455567999


Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHccCchh
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRG-CKPD------KVTYRTMVRAYSTNGMKN  325 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~  325 (349)
                      +|...++.+.+..+ .+...+..+...+...|+   +++|...+++..+.. -.|+      ...|..+...|...|+++
T Consensus       160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988754 356778888888888888   888999998887652 1233      257788889999999999


Q ss_pred             hhHHHHHHHHHhHHh
Q 018876          326 HAKEFQDLVEKMDET  340 (349)
Q Consensus       326 ~a~~~~~~~~~~~~~  340 (349)
                      +|.+.++...++++.
T Consensus       239 ~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          239 KADAAWKNILALDPT  253 (272)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCcc
Confidence            999999999887654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.74  E-value=1.5e-16  Score=126.71  Aligned_cols=247  Identities=10%  Similarity=-0.035  Sum_probs=110.8

Q ss_pred             CCCChHHHHHHHHHHHhcCC---CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018876            4 KCKQPEKAHELFQAMVDEGC---DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD   80 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (349)
                      ..|++++|++.|+++.+...   +.+..++..+..++...|++++|...|+++....  +.+..++..+...+...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence            34555555555555554321   1123445555555555555555555555554432  234445555555555555555


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876           81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ  160 (349)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  160 (349)
                      +|...++++.+.. +.+...+..+..++...|++++|...++++                                   .
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------------------------------~  138 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-----------------------------------Y  138 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------------------H
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH-----------------------------------H
Confidence            5555555554432 123444444444444445555555444444                                   4


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---Cc
Q 018876          161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK---PS  237 (349)
Q Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~  237 (349)
                      +..  |+.......+..+...|++++|...+++...... ++...+. ++..+...++.++|...+.........   .+
T Consensus       139 ~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  214 (275)
T 1xnf_A          139 QDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHL  214 (275)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence            432  1111222222233344555555555544443321 1222222 344444445555555555554332110   01


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018876          238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL  296 (349)
Q Consensus       238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  296 (349)
                      ...+..+...+...|++++|...++.+....+. +.   .....++...|++++|.+.+
T Consensus       215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence            344555555666666666666666665554321 21   12233445555555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.74  E-value=2.6e-14  Score=113.65  Aligned_cols=224  Identities=8%  Similarity=-0.058  Sum_probs=126.1

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCchHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTY  101 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (349)
                      ++.++..+...+...|++++|.+.|++..+.    .+..++..+...+..    .+++++|...|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            4555666666666666777777777666652    244555666666666    666666666666666654   45555


Q ss_pred             HHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018876          102 NTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNI  173 (349)
Q Consensus       102 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (349)
                      ..+...|..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            566666665    666666666666665543   34455555555555    566666666666655543   3344445


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          174 LLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       174 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      +...+..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...+++..+.+.   ...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence            5555555    555666666555555443   33444455555555    5555555555555554331   33444444


Q ss_pred             HHHHh----cCChhhHHHHHHHHhhCC
Q 018876          246 RAYGH----AGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       246 ~~~~~----~~~~~~a~~~~~~~~~~~  268 (349)
                      ..+..    .+++++|...++...+.+
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            44554    555555555555554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.73  E-value=3.5e-14  Score=112.90  Aligned_cols=225  Identities=10%  Similarity=-0.056  Sum_probs=161.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhH
Q 018876           61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTM  136 (349)
Q Consensus        61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  136 (349)
                      -+..++..+...+...+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            356677777777888888888888888877732   45666777777777    788888888888877664   55666


Q ss_pred             HHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018876          137 NCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNI  208 (349)
Q Consensus       137 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (349)
                      ..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            777777777    788888888888777764   56667777777777    778888888887777655   4556666


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018876          209 VIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLV  280 (349)
Q Consensus       209 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  280 (349)
                      +...+..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...++...+.+.   ...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence            6666766    777777777777776653   34566667777777    7777777777777776542   45566667


Q ss_pred             HHHHc----cCChHHHHHHHHHHHhcC
Q 018876          281 DAYGR----LKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       281 ~~~~~----~g~~~~a~~~~~~~~~~~  303 (349)
                      ..|..    .+++++|...|++..+.|
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            77777    777777777777777764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=4.1e-14  Score=121.62  Aligned_cols=309  Identities=8%  Similarity=-0.075  Sum_probs=220.6

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-------PDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-----   92 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----   92 (349)
                      .....|+.|...+...|++++|++.|++..+.       ...+....+|+.+..++...|++++|...+++..+.     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34667999999999999999999999886431       111345678999999999999999999999887653     


Q ss_pred             C-CC-CchHHHHHHHHHHhc--cCchHHHHHHHHHHhccCCCcchhhHHHHHHH---HHccCCHHHHHHHHHHHHhcCCC
Q 018876           93 G-IR-PNTVTYNTLIDAYGR--AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA---FGNSGQIDTMEKCYEKFQSAGIQ  165 (349)
Q Consensus        93 ~-~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~  165 (349)
                      + .. ....++..+..++..  .+++++|...|++..+.. +-+...+..+..+   +...++.++|++.+++..+.. +
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence            1 11 134556555545444  467999999999998764 3344444444444   445677888999999988774 3


Q ss_pred             CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876          166 PSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL  241 (349)
Q Consensus       166 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (349)
                      .+..++..+...+..    .++.++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence            466666666555544    46788999999998877643 67888999999999999999999999998764 3455666


Q ss_pred             HHHHHHHHhc-------------------CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          242 CSLVRAYGHA-------------------GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       242 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ..+..+|...                   +..+.|...++...+..+ .+...+..+...|...|++++|...|++....
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            6666555322                   235567777777776553 35567888999999999999999999999987


Q ss_pred             CCCCCHH--HHHHHHH-HHHccCchhhhHHHHHHHHHhH
Q 018876          303 GCKPDKV--TYRTMVR-AYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       303 ~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      ...|...  .+..+.. .....|+.++|+..++...++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~  402 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN  402 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            5443321  2233332 3457899999999988776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=3.1e-15  Score=123.76  Aligned_cols=196  Identities=7%  Similarity=0.008  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLID  106 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  106 (349)
                      .+|..+...+...|++++|+..|+++....  +-+..+|+.+..++...|+ +++|+..+++.+... +-+...|+.+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            344555555555555555555555555442  3344555555555555554 555555555555542 224445555555


Q ss_pred             HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK-AGHFE  185 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  185 (349)
                      ++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            5555555555555555555443 3344445555555555555555555555555443 2244445555555444 33324


Q ss_pred             HH-----HHHHHHHHhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHHHH
Q 018876          186 KM-----SAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--DLKQMEYLFRLM  229 (349)
Q Consensus       186 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~  229 (349)
                      +|     +..+++.....+. +...|+.+...+...|  ++++|.+.+..+
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            44     2444444443322 3444444444444444  344444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.73  E-value=1.1e-14  Score=114.27  Aligned_cols=200  Identities=9%  Similarity=-0.036  Sum_probs=102.7

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID  106 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  106 (349)
                      ...+..+...+...|++++|.+.|+++....  +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence            3445555555566666666666666555432  3345555555555666666666666666555542 224445555555


Q ss_pred             HHhccCchHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE  185 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (349)
                      .+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            5555555555555555555421122 33444445555555555555555555554442 223444555555555555555


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      +|...++.+.+... .+...+..+...+...|++++|...++.+.+
T Consensus       193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            55555555544332 2344444444555555555555555555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=7.7e-15  Score=112.95  Aligned_cols=164  Identities=9%  Similarity=-0.126  Sum_probs=66.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAF  213 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~  213 (349)
                      +..+...+...|++++|.+.++++.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+...+
T Consensus        45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  123 (225)
T 2vq2_A           45 WLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS  123 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence            3333333444444444444444433332 12333344444444444 44444444444443311111 133344444444


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018876          214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  293 (349)
                      ...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..+..+...+..+...+...|+.+.|.
T Consensus       124 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  202 (225)
T 2vq2_A          124 AKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY  202 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence            44444444444444443322 12233444444444444444444444444443322123333444444444445555554


Q ss_pred             HHHHHHHh
Q 018876          294 GVLEVMQQ  301 (349)
Q Consensus       294 ~~~~~~~~  301 (349)
                      .+++.+..
T Consensus       203 ~~~~~~~~  210 (225)
T 2vq2_A          203 EYEAQLQA  210 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=1.2e-14  Score=111.93  Aligned_cols=204  Identities=12%  Similarity=-0.025  Sum_probs=143.5

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL  104 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  104 (349)
                      .+...+..+...+...|++++|.+.|+++.+..  +.+...+..+...+...|++++|...++++.... +.+..++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   82 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            346667777888888888888888888877653  4556777778888888888888888888877763 3356677777


Q ss_pred             HHHHhcc-CchHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018876          105 IDAYGRA-KMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG  182 (349)
Q Consensus       105 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (349)
                      ...+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence            7778888 88888888888777622222 34566667777777777777777777776653 335666777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      ++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus       162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            77777777777766543135556666666667777777777777776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=8.3e-15  Score=114.98  Aligned_cols=198  Identities=7%  Similarity=-0.092  Sum_probs=89.2

Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018876          101 YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK  180 (349)
Q Consensus       101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (349)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence            3333334444444444444444443332 2223334444444444444444444444444332 1233444444444444


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018876          181 AGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS  259 (349)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  259 (349)
                      .|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555554444311111 33444444444555555555555555544432 2234444455555555555555555


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .++.+.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus       197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          197 YYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5555544332 23444455555555555555555555555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.72  E-value=1.6e-15  Score=118.30  Aligned_cols=201  Identities=7%  Similarity=-0.024  Sum_probs=113.1

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      ....|..+...+...|++++|...|+++.+..  +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            44556666677777777777777777776643  4456667777777777777777777777776653 23556666666


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE  185 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (349)
                      ..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            66777777777777777666553 3345555666666666666666666666665543 234555566666666666666


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      +|...++++.+... .+..++..+...+...|++++|...++++.+.
T Consensus       177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            66666666555432 24555555666666666666666666665543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.72  E-value=1e-14  Score=120.63  Aligned_cols=248  Identities=9%  Similarity=0.002  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc-hHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018876           63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLR  141 (349)
Q Consensus        63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  141 (349)
                      ...|..+...+...|++++|+..+++.+... +-+...|+.+..++...|+ +++|+..+++++... +-+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            4678888889999999999999999999874 3367889999999999997 999999999999875 557788999999


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-cCChH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR-AGDLK  220 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  220 (349)
                      ++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999885 448889999999999999999999999999998755 78899999999988 66657


Q ss_pred             HH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC------
Q 018876          221 QM-----EYLFRLMRSERIKPSCVTLCSLVRAYGHAG--KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK------  287 (349)
Q Consensus       221 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------  287 (349)
                      +|     +..+++.+... +-+...|..+...+...|  ++++|...+..+ +.. +.+...+..+...|.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence            77     47888887764 446678888888888888  688999999888 443 346788889999998874      


Q ss_pred             ---ChHHHHHHHHHH-HhcCCCCC-HHHHHHHHHHHH
Q 018876          288 ---CFAEMKGVLEVM-QQRGCKPD-KVTYRTMVRAYS  319 (349)
Q Consensus       288 ---~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~~  319 (349)
                         ..++|.++++++ .+.  .|. ...|..+...+.
T Consensus       330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence               258999999998 655  343 455665555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.72  E-value=1.9e-15  Score=117.97  Aligned_cols=198  Identities=8%  Similarity=-0.011  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG  179 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (349)
                      .|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence            34444444444555555555555544432 2234444444555555555555555555554442 224445555555555


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018876          180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS  259 (349)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  259 (349)
                      ..|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence            55555555555555554432 244455555555555555555555555554432 2334455555555566666666666


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .++.+.+... .+..++..+...|...|++++|...++++.+.
T Consensus       181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            6655554432 24455555666666666666666666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.72  E-value=4.8e-16  Score=130.87  Aligned_cols=300  Identities=14%  Similarity=0.037  Sum_probs=221.5

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIRP   96 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~   96 (349)
                      .....+......+...|++++|...|+++....  +.+    ...+..+...+...|++++|...+++....    +..|
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            445567778888999999999999999988763  233    356788888999999999999998886543    2122


Q ss_pred             -chHHHHHHHHHHhccCchHHHHHHHHHHhccC----C-CcchhhHHHHHHHHHccCC--------------------HH
Q 018876           97 -NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED----C-EPDVWTMNCTLRAFGNSGQ--------------------ID  150 (349)
Q Consensus        97 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~--------------------~~  150 (349)
                       ...++..+...+...|++++|...+++.....    . .....++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             24567788889999999999999998876541    0 1124477788888999999                    99


Q ss_pred             HHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----chHHHHHHHHHHHhcCChH
Q 018876          151 TMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-W----TIVTYNIVIDAFGRAGDLK  220 (349)
Q Consensus       151 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~  220 (349)
                      +|.+.+.+..+.    +.. ....++..+...+...|++++|...+++..+.... +    ...++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999988876542    111 12456778888999999999999999887653211 1    1347888888999999999


Q ss_pred             HHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CC-CchHHHHHHHHHHHHccCChH
Q 018876          221 QMEYLFRLMRSE----RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DI-MLDTVFFNCLVDAYGRLKCFA  290 (349)
Q Consensus       221 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~  290 (349)
                      +|...+++..+.    +..+ ...++..+...+...|++++|...++...+.    +. .....++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999887643    1111 1457788889999999999999999887643    11 112557888999999999999


Q ss_pred             HHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHccCchhh
Q 018876          291 EMKGVLEVMQQR----GCK-PDKVTYRTMVRAYSTNGMKNH  326 (349)
Q Consensus       291 ~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~  326 (349)
                      +|...+++..+.    +.. ....++..+...+...|+...
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            999999987654    211 124567777788888887643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=4.5e-15  Score=125.29  Aligned_cols=272  Identities=10%  Similarity=-0.021  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCchH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ----G-IRPNTV   99 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~   99 (349)
                      .+..+...+...|++++|+..|+++.+..  +.+.    ..+..+...+...|++++|...+++....    + .+....
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34556667788888888888888887753  2233    46777778888888888888888876553    1 122345


Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHccCC-----------------HHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNSGQ-----------------IDTMEKCYE  157 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~  157 (349)
                      ++..+...|...|++++|...+++....    + .+....++..+...+...|+                 +++|.+.+.
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            6677777888888888888888776643    1 12234566677777778888                 777777777


Q ss_pred             HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhcCChHHHHHHHH
Q 018876          158 KFQSA----GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEYLFR  227 (349)
Q Consensus       158 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~  227 (349)
                      +..+.    +. .....++..+...+...|++++|...+++..+....     .....+..+...+...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            65432    11 112345666777777888888888877776543211     012366677777777788888877777


Q ss_pred             HHHhCCC---C--CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018876          228 LMRSERI---K--PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLE  297 (349)
Q Consensus       228 ~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~  297 (349)
                      +..+...   .  ....++..+...+...|++++|...++......     ......++..+...|...|++++|...++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            6654210   0  113556667777777777777777777665421     11123456667777777777777777777


Q ss_pred             HHHhc
Q 018876          298 VMQQR  302 (349)
Q Consensus       298 ~~~~~  302 (349)
                      +..+.
T Consensus       368 ~al~~  372 (411)
T 4a1s_A          368 QHLQL  372 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=4.1e-15  Score=125.50  Aligned_cols=274  Identities=11%  Similarity=0.004  Sum_probs=211.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch----HHHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchh
Q 018876           64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVW  134 (349)
Q Consensus        64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~  134 (349)
                      ..+..+...+...|++++|...|+++.+.+.. +.    ..+..+...|...|++++|...+++....    + .+....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34556677889999999999999999887422 32    47888889999999999999999987654    1 133456


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA----G-IQPSINTFNILLDSYGKAGH-----------------FEKMSAVME  192 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~  192 (349)
                      .+..+...|...|++++|...+++..+.    + .+....++..+...+...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7888889999999999999999987654    1 12235577888889999999                 999999988


Q ss_pred             HHHhc----CC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018876          193 YMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---K--PSCVTLCSLVRAYGHAGKPEKLGSVLR  262 (349)
Q Consensus       193 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~  262 (349)
                      +..+.    +. ......+..+...+...|++++|...+++..+...   .  ....++..+...+...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            76542    11 11345788888999999999999999998865311   1  112377888999999999999999998


Q ss_pred             HHhhCCC-----CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCchhhhHHHHH
Q 018876          263 FIDNSDI-----MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CK-PDKVTYRTMVRAYSTNGMKNHAKEFQD  332 (349)
Q Consensus       263 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~  332 (349)
                      .......     .....++..+...|...|++++|...+++.....    .. ....++..+..+|...|++++|.+.++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8765321     1125678889999999999999999999887641    11 124578888899999999999999999


Q ss_pred             HHHHhH
Q 018876          333 LVEKMD  338 (349)
Q Consensus       333 ~~~~~~  338 (349)
                      ...++.
T Consensus       368 ~al~~~  373 (411)
T 4a1s_A          368 QHLQLA  373 (411)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=1.1e-14  Score=122.53  Aligned_cols=279  Identities=11%  Similarity=0.016  Sum_probs=214.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCC-
Q 018876           60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE-  130 (349)
Q Consensus        60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-  130 (349)
                      .+....+......+...|++++|...|++..+.+.. +    ..++..+...+...|++++|...+++....    +.. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            456667778888999999999999999999887422 3    357888889999999999999999887543    212 


Q ss_pred             cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCC--------------------HH
Q 018876          131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG----IQ-PSINTFNILLDSYGKAGH--------------------FE  185 (349)
Q Consensus       131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~~  185 (349)
                      .....+..+...+...|++++|...+++..+..    .. ....++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            235677888889999999999999998876541    11 124477888889999999                    99


Q ss_pred             HHHHHHHHHHhc----C-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCc----HHHHHHHHHHHHhcCChh
Q 018876          186 KMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPS----CVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       186 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~  255 (349)
                      +|...+.+....    + ......++..+...+...|++++|...+++..+... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998876543    1 111245788888999999999999999998864310 111    247888899999999999


Q ss_pred             hHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCchh
Q 018876          256 KLGSVLRFIDNS----DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK-PD----KVTYRTMVRAYSTNGMKN  325 (349)
Q Consensus       256 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~  325 (349)
                      +|...++.....    +..+ ...++..+...|...|++++|...+++....... ++    ..++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999887643    1111 1567888999999999999999999988764111 11    567888889999999999


Q ss_pred             hhHHHHHHHHHhHH
Q 018876          326 HAKEFQDLVEKMDE  339 (349)
Q Consensus       326 ~a~~~~~~~~~~~~  339 (349)
                      +|.+.++...++.+
T Consensus       325 ~A~~~~~~al~~~~  338 (406)
T 3sf4_A          325 QAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.66  E-value=6.3e-13  Score=122.26  Aligned_cols=268  Identities=13%  Similarity=0.132  Sum_probs=184.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +...|.+++|..+|++...     .....+.++.   ..+++++|.++.++.       -+..+|..+..++...|++++
T Consensus      1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHH
Confidence            3456788888888887521     2222333332   567788888887754       235677788888888888888


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      |...|.+.      -|...|..++.++.+.|++++|.+.+...++..  +++...+.++.+|++.+++++...+.    +
T Consensus      1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A         1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred             HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence            88888553      266777788888888888888888888776654  33323335777888888777544332    1


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876          162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL  241 (349)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (349)
                         .++...|..+...|...|++++|..+|...         ..|..+...+.+.|++++|.+.+++.      .+..+|
T Consensus      1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A         1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence               335556667888888888888888888774         47788888888888888888888765      244777


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876          242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST  320 (349)
Q Consensus       242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  320 (349)
                      ..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +-....|.-+...|.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence            77777888888877777755532     2355666788888888888888888887776543 2233445444444444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.66  E-value=5e-14  Score=117.71  Aligned_cols=234  Identities=8%  Similarity=-0.121  Sum_probs=142.1

Q ss_pred             HHHHHhccCchHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC--C----CCCHHHHH
Q 018876          104 LIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG--I----QPSINTFN  172 (349)
Q Consensus       104 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~  172 (349)
                      ....+...|++++|...+++..+.    +-.+ ...++..+...|...|++++|...+.+..+.-  .    +....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444555666677777666666543    1111 23556666666677777777777666655421  0    11234566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHH
Q 018876          173 ILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLC  242 (349)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  242 (349)
                      .+...|...|++++|...+++..+....     ....++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            6667777777777777777666543111     11246666777777777777777777776551    22 33355677


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKP-DKVTYRTM  314 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l  314 (349)
                      .+...+...|++++|...++...+.    +-+.....+..+...|...|+   +++|..++++.   +..| ....+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            7777777777777777777765432    111222335667777777777   56666666554   2222 23456667


Q ss_pred             HHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          315 VRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       315 ~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      ...|...|++++|.+.++...++...
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            77788888888888888877776654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.66  E-value=1e-14  Score=119.30  Aligned_cols=199  Identities=14%  Similarity=0.082  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CchH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIR-PNTV   99 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~   99 (349)
                      .+......+...|++++|...|+++.+..  +.+    ...+..+...+...|++++|...+++....    +.. ....
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            44555666777888888888888777652  223    355667777777788888887777765443    111 1244


Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCC--------------------HHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQ--------------------IDTMEK  154 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~  154 (349)
                      ++..+...+...|++++|...+++..+...     .....++..+...+...|+                    +++|.+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            566666677777777777777766553210     0112345555566666666                    566655


Q ss_pred             HHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhcCChHHHHH
Q 018876          155 CYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEY  224 (349)
Q Consensus       155 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~  224 (349)
                      .+++..+.    +.. ....++..+...+...|++++|...+++..+....     ....++..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            55554321    100 11223444445555555555555555544322100     011234444444444444444444


Q ss_pred             HHHHH
Q 018876          225 LFRLM  229 (349)
Q Consensus       225 ~~~~~  229 (349)
                      .+++.
T Consensus       245 ~~~~a  249 (338)
T 3ro2_A          245 YYKKT  249 (338)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=3.4e-13  Score=109.09  Aligned_cols=236  Identities=6%  Similarity=-0.065  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-------cCch-------HHHHHH
Q 018876           63 VNTYSILIKSCLKA----FAF----DKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-------AKMF-------AEMELT  120 (349)
Q Consensus        63 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~  120 (349)
                      ...|...+....+.    ++.    ++|..+|++..... +-+...|..+...+..       .|++       ++|..+
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~   86 (308)
T 2ond_A            8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI   86 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence            34555555554443    233    56777888877752 3466677777766653       4664       778888


Q ss_pred             HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018876          121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN-TFNILLDSYGKAGHFEKMSAVMEYMQKYHY  199 (349)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  199 (349)
                      |++....-.+.+...|..+...+...|++++|..+|+++.+... .+.. .|..+...+.+.|++++|..+|++..+...
T Consensus        87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A           87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            87777631133455677777777778888888888888776421 1233 677777777777888888888877776543


Q ss_pred             CCchHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCc--hHHH
Q 018876          200 SWTIVTYNIVIDAFG-RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IML--DTVF  275 (349)
Q Consensus       200 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~  275 (349)
                       .+...|........ ..|++++|..+|+...+.. +.+...|..++..+...|++++|..+|+...... ..|  ....
T Consensus       166 -~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l  243 (308)
T 2ond_A          166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  243 (308)
T ss_dssp             -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred             -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence             24444443333322 2577788888877776543 3356677777777777788888888887777652 233  3556


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      |..++..+.+.|+.+.|..+++++.+.
T Consensus       244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          244 WARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777777777778888887777777765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.65  E-value=1.4e-12  Score=119.93  Aligned_cols=280  Identities=14%  Similarity=0.113  Sum_probs=222.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA   84 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   84 (349)
                      .|++++|.++.++.      -++.+|..+..++...|++++|++.|.+.       .|...|..++.++.+.|++++|.+
T Consensus      1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHH
Confidence            45566666665543      35778999999999999999999999653       467788889999999999999999


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018876           85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI  164 (349)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  164 (349)
                      .+...++..  +++...+.++.+|++.+++++.....    .   .++...|..+...|...|++++|..+|...     
T Consensus      1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A         1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred             HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence            999887764  34434445899999999988644442    1   345566778999999999999999999985     


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018876          165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL  244 (349)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (349)
                          ..|..+..++.+.|++++|.+.+++.      .+..+|..+..+|...|++..|......+     ..++..+..+
T Consensus      1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A         1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred             ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence                47999999999999999999999877      26799999999999999999998877643     3455677799


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--CChHHHHHHHHHHHhcCCCC------CHHHHHHHHH
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRTMVR  316 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~  316 (349)
                      +..|.+.|.+++|+.+++...... +-....|+.+...|++-  ++..++.+.|..-.  +++|      +...|..++.
T Consensus      1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A         1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence            999999999999999999888765 34667888888777764  44555666555332  2222      5677999999


Q ss_pred             HHHccCchhhhHH
Q 018876          317 AYSTNGMKNHAKE  329 (349)
Q Consensus       317 ~~~~~g~~~~a~~  329 (349)
                      .|.+.|+++.|..
T Consensus      1364 LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1364 LYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHhcccHHHHHH
Confidence            9999999998883

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.65  E-value=6.8e-14  Score=116.91  Aligned_cols=295  Identities=9%  Similarity=-0.061  Sum_probs=213.9

Q ss_pred             CCCCChHHHHHHHHHHHhc--CC--CCchhhHHHHHHH--HHcCCChhHHH-----------HHHHHhhcCCCCCCCHHH
Q 018876            3 GKCKQPEKAHELFQAMVDE--GC--DANTQSFTALLSA--YGRSGLFDKAF-----------SLLEHMKNTPDCQPDVNT   65 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~   65 (349)
                      .+.+++++|..+++++.+.  ..  .++...|..++..  ..-.++++.+.           +.++.+...   +.+...
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~   99 (383)
T 3ulq_A           23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG   99 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence            3578999999999998764  22  2233344555443  23345566666           777777654   222222


Q ss_pred             HHH------HHHHHHhcCChhHHHHHHHHHHhC----CCCC-chHHHHHHHHHHhccCchHHHHHHHHHHhccC--C---
Q 018876           66 YSI------LIKSCLKAFAFDKVQALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED--C---  129 (349)
Q Consensus        66 ~~~------l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---  129 (349)
                      +..      ....+...|++++|...+++..+.    +-.+ ...++..+..+|...|++++|...+++..+..  .   
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence            222      556677899999999999998774    2112 34678889999999999999999999987541  1   


Q ss_pred             C-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC
Q 018876          130 E-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PS----INTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY  199 (349)
Q Consensus       130 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~  199 (349)
                      . ....+++.+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            1 12456788889999999999999999998754211 11    247788899999999999999999988762    22


Q ss_pred             -CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc
Q 018876          200 -SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML  271 (349)
Q Consensus       200 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~  271 (349)
                       +....++..+...+...|++++|...+++..+.    +-+.....+..+...+...|+   .++|..+++....  ...
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~  337 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD  337 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence             335678889999999999999999999988653    212223345677788888888   6677777766622  122


Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ....+..+...|...|++++|...+++..+.
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3457778999999999999999999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.64  E-value=1.1e-14  Score=119.09  Aligned_cols=276  Identities=11%  Similarity=0.012  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhcc----CC-Ccchh
Q 018876           64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVW  134 (349)
Q Consensus        64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~  134 (349)
                      ..+......+...|++++|...++++.+.... +    ...+..+...+...|++++|...+++....    +. +....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            34555677888999999999999999887422 3    367788889999999999999999887643    21 22356


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPS----INTFNILLDSYGKAGH--------------------FEKMSA  189 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~  189 (349)
                      .+..+...+...|++++|...+.+..+... .++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            778888999999999999999998765311 112    3477788888999999                    999999


Q ss_pred             HHHHHHhc----C-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCChhhHHH
Q 018876          190 VMEYMQKY----H-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLCSLVRAYGHAGKPEKLGS  259 (349)
Q Consensus       190 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~  259 (349)
                      .+++....    + .......+..+...+...|++++|...+++..+.    +. .....++..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            98876542    1 1112457788888999999999999999987643    11 1113377888899999999999999


Q ss_pred             HHHHHhhCC----CC-chHHHHHHHHHHHHccCChHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCchhhhHH
Q 018876          260 VLRFIDNSD----IM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CK-PDKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       260 ~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      .++...+..    .. ....++..+...|...|++++|...+++.....    -. ....++..+...|...|++++|.+
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            998876431    11 125677888999999999999999999887541    11 124577888899999999999999


Q ss_pred             HHHHHHHhHHh
Q 018876          330 FQDLVEKMDET  340 (349)
Q Consensus       330 ~~~~~~~~~~~  340 (349)
                      .++...++.+.
T Consensus       325 ~~~~a~~~~~~  335 (338)
T 3ro2_A          325 FAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHHHh
Confidence            99988877553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.63  E-value=2.2e-13  Score=101.38  Aligned_cols=166  Identities=11%  Similarity=-0.014  Sum_probs=85.3

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018876          133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA  212 (349)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  212 (349)
                      +..|..+...+...|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+......... +...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence            3445555555555555555555555555543 224455555555555555555555555555444322 34444444555


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  292 (349)
                      +...++++.+...+....... +.+...+..+...+...|++++|...++...+..+ .+..+|..+..+|.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence            555555555555555554432 23344455555555555555555555555554432 2444555555555555555555


Q ss_pred             HHHHHHHHhc
Q 018876          293 KGVLEVMQQR  302 (349)
Q Consensus       293 ~~~~~~~~~~  302 (349)
                      ...|++..+.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            5555555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.63  E-value=5.3e-14  Score=120.61  Aligned_cols=216  Identities=8%  Similarity=-0.063  Sum_probs=161.7

Q ss_pred             ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHH
Q 018876           42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT  120 (349)
Q Consensus        42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  120 (349)
                      .+++++..++......  +.+...+..+...+...|++ ++|+..|++..+.. +-+...|..+..+|...|++++|...
T Consensus        83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3667777777766542  45677777788888888888 88888888877763 33567788888888888888888888


Q ss_pred             HHHHhccCCCcchhhHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CC
Q 018876          121 LVKMLSEDCEPDVWTMNCTLRAFGNS---------GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA--------GH  183 (349)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~  183 (349)
                      |++..+.  .|+...+..+...+...         |++++|.+.+++..+.. +.+...|..+..++...        |+
T Consensus       160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence            8888766  35567777777788887         88888888888887764 33677778888888777        88


Q ss_pred             HHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876          184 FEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL  261 (349)
Q Consensus       184 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  261 (349)
                      +++|...|++..+..+.  .+...|..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888776431  367778888888888888888888888877654 345566777778888888888877766


Q ss_pred             HHH
Q 018876          262 RFI  264 (349)
Q Consensus       262 ~~~  264 (349)
                      ..+
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.63  E-value=7.2e-13  Score=107.17  Aligned_cols=217  Identities=9%  Similarity=-0.009  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHHH-------cCCCh-------hHHHHHHHHhhc-CCCCCCCHHHHHHHHHHH
Q 018876            9 EKAHELFQAMVDEGCDANTQSFTALLSAYG-------RSGLF-------DKAFSLLEHMKN-TPDCQPDVNTYSILIKSC   73 (349)
Q Consensus         9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~   73 (349)
                      ++|..+|++..+.. +.++..|..++..+.       +.|++       ++|..+|++... ..  +.+...|..++..+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence            67778888887753 556777877777765       34775       788888888876 32  34556778888888


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCc-hH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH-HccCCHH
Q 018876           74 LKAFAFDKVQALLSDMSTQGIRPN-TV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF-GNSGQID  150 (349)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  150 (349)
                      .+.|++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|....... ...|+++
T Consensus       110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence            8888888888888888775  343 33 67777777777888888888888877654 23333343332221 1257777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--chHHHHHHHHHHHhcCChHHHHHHHH
Q 018876          151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSW--TIVTYNIVIDAFGRAGDLKQMEYLFR  227 (349)
Q Consensus       151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~  227 (349)
                      +|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++..... .+|  ....|..++....+.|+.+.|..+++
T Consensus       187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777766653 3356667777777777777777777777776642 233  34566666776677777777777777


Q ss_pred             HHHhC
Q 018876          228 LMRSE  232 (349)
Q Consensus       228 ~~~~~  232 (349)
                      ++.+.
T Consensus       266 ~a~~~  270 (308)
T 2ond_A          266 RRFTA  270 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.62  E-value=4e-13  Score=114.43  Aligned_cols=302  Identities=14%  Similarity=0.067  Sum_probs=165.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCCh---hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC---
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF---DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF---   77 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---   77 (349)
                      +.|++++|.+.|++..+.|   ++.++..|...|...|+.   ++|.+.|++..+.     +...+..+...+...+   
T Consensus        15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A           15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CC
T ss_pred             hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCC
Confidence            4567778888887777665   344455555666666666   7777777776632     3344445555344433   


Q ss_pred             --ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc---------------------------------------hHH
Q 018876           78 --AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM---------------------------------------FAE  116 (349)
Q Consensus        78 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------~~~  116 (349)
                        ++++|..+|++..+.|.. +  .+..|...|...+.                                       .+.
T Consensus        87 ~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~  163 (452)
T 3e4b_A           87 EAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD  163 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence              566777777777665522 1  33333333332221                                       222


Q ss_pred             HHHHHHHHhccCCCcchhhHHHHHHHHHccC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 018876          117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSG---QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA----GHFEKMSA  189 (349)
Q Consensus       117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~  189 (349)
                      +..+++...    ..+...+..+...|...|   +.++|.+.|++..+.| +++...+..+...|...    ++.++|..
T Consensus       164 a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          164 VERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             HHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            222333222    223336666777777777   7788888888887776 34555555566666544    57888888


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-----ChhhHHHHH
Q 018876          190 VMEYMQKYHYSWTIVTYNIVIDA-F--GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-----KPEKLGSVL  261 (349)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~  261 (349)
                      .|++.. .+   ++..+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|...|
T Consensus       239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~  310 (452)
T 3e4b_A          239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF  310 (452)
T ss_dssp             HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred             HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence            888776 33   45556666655 3  45778888888888877665   4455666666665 44     788888888


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHH
Q 018876          262 RFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDL  333 (349)
Q Consensus       262 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~  333 (349)
                      +... .+   ++..+..|...|..    ..++++|...|+...+.|.   ......|...|..    ..+.++|..+++.
T Consensus       311 ~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~  383 (452)
T 3e4b_A          311 EKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQL  383 (452)
T ss_dssp             HTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred             HHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            7777 33   45566666666665    3477888888887777653   3344445555543    3456666666655


Q ss_pred             HHH
Q 018876          334 VEK  336 (349)
Q Consensus       334 ~~~  336 (349)
                      ..+
T Consensus       384 A~~  386 (452)
T 3e4b_A          384 AKA  386 (452)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.62  E-value=3.9e-14  Score=120.66  Aligned_cols=281  Identities=14%  Similarity=0.016  Sum_probs=165.6

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 018876           32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF---DKVQALLSDMSTQGIRPNTVTYNTLIDAY  108 (349)
Q Consensus        32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (349)
                      .+...+.+.|++++|.++|++..+.+    +...+..+...+...|+.   ++|..+|++..+.    +...+..+...+
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~   79 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL   79 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence            35667788999999999999997753    233444566666677777   8999999998854    555666666645


Q ss_pred             hccC-----chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH---HHHHHHHHHHhcC-----------------
Q 018876          109 GRAK-----MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID---TMEKCYEKFQSAG-----------------  163 (349)
Q Consensus       109 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~-----------------  163 (349)
                      ...+     ++++|...|++..+.|. ++  .+..+...|...+..+   ++.+.+......|                 
T Consensus        80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           80 AAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             HTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence            4444     78999999999887653 22  3444444444333211   1222222222111                 


Q ss_pred             ---------------CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc----CChHH
Q 018876          164 ---------------IQPSINTFNILLDSYGKAG---HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA----GDLKQ  221 (349)
Q Consensus       164 ---------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  221 (349)
                                     ...+...+..+...|...|   +.++|...|++..+.+.. +...+..+...|...    +++++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHH
Confidence                           1122236667777777788   788888888888777643 555555666666544    68888


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHH-H--HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC-----ChHHHH
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRA-Y--GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK-----CFAEMK  293 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~  293 (349)
                      |...|+... .|   +...+..+... +  ...+++++|...|+...+.+   +...+..+...|. .|     ++++|.
T Consensus       236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            888888876 33   34555555555 3  45788888888888888766   4556666777776 45     888888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHHHHH
Q 018876          294 GVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEK  336 (349)
Q Consensus       294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~  336 (349)
                      ..|++.. .|   +...+..+...|..    ..+.++|.+.+++..+
T Consensus       308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            8888777 33   66677777766665    3377888888776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.61  E-value=7.2e-15  Score=119.00  Aligned_cols=170  Identities=15%  Similarity=0.131  Sum_probs=105.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc------C
Q 018876           62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-------GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D  128 (349)
Q Consensus        62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~  128 (349)
                      +..++..+...+...|++++|..+++++.+.       ..+....++..+...|...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3556777777888888888888888877663       22334556677777777778888888777776643      1


Q ss_pred             -CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 018876          129 -CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA------GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY---  197 (349)
Q Consensus       129 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  197 (349)
                       .+.....+..+...+...|++++|...++++.+.      +..| ....+..+...+...|++++|...++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             1223455666667777777777777777766543      1111 3344555666666666666666666665543   


Q ss_pred             ---CCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876          198 ---HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       198 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  231 (349)
                         +..| ...++..+...+...|++++|...++++.+
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               1111 234555556666666666666666666554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=4.6e-13  Score=99.67  Aligned_cols=169  Identities=11%  Similarity=0.014  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      ++.+|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            3445555555555555555555555555554432 45555555555555555555555555554433 233444444555


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhh
Q 018876          247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH  326 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  326 (349)
                      .+...++++.+...+.......+ .+...+..+...|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence            55555555555555555554432 2444555555555555555555555555555432 144555555555555555555


Q ss_pred             hHHHHHHHHHhHH
Q 018876          327 AKEFQDLVEKMDE  339 (349)
Q Consensus       327 a~~~~~~~~~~~~  339 (349)
                      |.+.++...++++
T Consensus       160 A~~~~~~al~~~p  172 (184)
T 3vtx_A          160 AVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhCCc
Confidence            5555555555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.60  E-value=2.8e-14  Score=115.51  Aligned_cols=172  Identities=19%  Similarity=0.203  Sum_probs=128.3

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ------G   93 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~   93 (349)
                      +..++..+...+...|++++|...|+++.+..      ..+....++..+...+...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            45677888888888999999999998887620      11334566778888888899999999988887764      2


Q ss_pred             C-CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc------CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 018876           94 I-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---  162 (349)
Q Consensus        94 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  162 (349)
                      - +....++..+...+...|++++|...+++..+.      +. +.....+..+...+...|++++|.++++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 224567778888888899999999988887754      21 234556777888888899999999988887764   


Q ss_pred             ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018876          163 ---GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY  197 (349)
Q Consensus       163 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (349)
                         +..| ...++..+...+...|++++|...++++.+.
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               2122 3456777888888899999999998887763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=1.5e-13  Score=117.75  Aligned_cols=216  Identities=8%  Similarity=-0.055  Sum_probs=184.9

Q ss_pred             ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch-HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018876           78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF-AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY  156 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  156 (349)
                      .++++...++...... +.+...+..+..++...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4677788888776653 34778889999999999999 99999999998775 446788999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc--------CCh
Q 018876          157 EKFQSAGIQPSINTFNILLDSYGKA---------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA--------GDL  219 (349)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  219 (349)
                      ++..+..  |+...+..+...+...         |++++|...+++..+..+. +...|..+..++...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            9999874  6678888999999999         9999999999999887644 788899999999888        999


Q ss_pred             HHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018876          220 KQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL  296 (349)
Q Consensus       220 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  296 (349)
                      ++|...|++..+.. +   .+...+..+..++...|++++|...++.+.+..+. +...+..+..++...|++++|...+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998764 3   47788999999999999999999999999887643 6778888999999999999998776


Q ss_pred             HHHH
Q 018876          297 EVMQ  300 (349)
Q Consensus       297 ~~~~  300 (349)
                      ..+.
T Consensus       316 ~~~~  319 (474)
T 4abn_A          316 GKTK  319 (474)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            5543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.56  E-value=1.2e-11  Score=102.91  Aligned_cols=302  Identities=11%  Similarity=0.007  Sum_probs=202.8

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCc----hH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN----TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RPN----TV   99 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~   99 (349)
                      ........+...|++++|...+++...... ..+..    +++.+...+...|++++|...+++...... ..+    ..
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344455667789999999999999876532 22222    456667788889999999999998765311 111    23


Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhcc----CCC--c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC----CCH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ----PSI  168 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~  168 (349)
                      ++..+...+...|++++|...+++....    +..  | ....+..+...+...|++++|...+++.......    ...
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            3566777888999999999999888753    211  2 2345666778888999999999999988765322    123


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHH
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-IVTYN-----IVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCV  239 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~  239 (349)
                      .++..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...++........+   ...
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            5677788888999999999999988865422211 11222     23344678999999999998876543211   123


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCchH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDT-VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTM  314 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  314 (349)
                      .+..+...+...|++++|...++.....    +..++. ..+..+..++...|+.++|...+++......  .    ...
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~  328 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF  328 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence            4567778888999999999998877542    222233 3666778888899999999999988876411  0    112


Q ss_pred             HHHHHccCchhhhHHHHHHHHHhHH
Q 018876          315 VRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       315 ~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +..+...|  +....+++.+.+..+
T Consensus       329 ~~~~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          329 ISHFVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHHcc--HHHHHHHHHHHhCCC
Confidence            23344445  445555555544433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.55  E-value=4.3e-12  Score=105.78  Aligned_cols=316  Identities=13%  Similarity=0.024  Sum_probs=215.2

Q ss_pred             CCchhhHHHHHHHH--HcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCChhHHH---------HHHH
Q 018876           24 DANTQSFTALLSAY--GRSGLFDKAFSLLEHMKNTP-DC--QPDVNTYSILIKS--CLKAFAFDKVQ---------ALLS   87 (349)
Q Consensus        24 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~   87 (349)
                      .|+..+-+.|-.-|  ...+++++|..+++++.+.. ..  .++...|-.++..  ..-.+......         ..++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45555656666565  78999999999998875421 11  2333334444432  11122222222         5666


Q ss_pred             HHHhCCCCCch----HHHHHHHHHHhccCchHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018876           88 DMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQIDTMEKCYEK  158 (349)
Q Consensus        88 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  158 (349)
                      .+.....+.+.    ..+......+...|++++|...+++..+...     .....++..+...|...|+++.|...+.+
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            65443111111    1223344556788999999999999875421     11346778888899999999999999988


Q ss_pred             HHhcC----C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C-CCchHHHHHHHHHHHhcCChHHHHHHHH
Q 018876          159 FQSAG----I-Q-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----Y-SWTIVTYNIVIDAFGRAGDLKQMEYLFR  227 (349)
Q Consensus       159 ~~~~~----~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  227 (349)
                      ..+..    . . ....++..+...|...|++++|...+++..+..    . .....++..+...+...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            76531    1 1 125567888899999999999999998876531    1 1124577888899999999999999999


Q ss_pred             HHHhC----CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHccCC---hHHHHHHH
Q 018876          228 LMRSE----RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGVL  296 (349)
Q Consensus       228 ~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~  296 (349)
                      +..+.    +.+....++..+...+...|++++|...++...+.    +.+.....+..+...|...++   +.+|...+
T Consensus       247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            88761    22334677888999999999999999999987653    222234456777777888888   77777777


Q ss_pred             HHHHhcCCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhh
Q 018876          297 EVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCL  342 (349)
Q Consensus       297 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  342 (349)
                      +.   .+..|+ ...+..+...|...|++++|.+.++...+......
T Consensus       327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~  370 (378)
T 3q15_A          327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL  370 (378)
T ss_dssp             HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            65   332232 45667788899999999999999999887765443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.53  E-value=6.3e-12  Score=104.76  Aligned_cols=295  Identities=8%  Similarity=-0.053  Sum_probs=203.6

Q ss_pred             CCCCChHHHHHHHHHHHhcC--C--CCchhhHHHHHHH--HHcCCChhHHH---------HHHHHhhcCCCCCCCH--H-
Q 018876            3 GKCKQPEKAHELFQAMVDEG--C--DANTQSFTALLSA--YGRSGLFDKAF---------SLLEHMKNTPDCQPDV--N-   64 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~~--~-   64 (349)
                      .+.+++++|.++++++.+..  .  ..+...|-.++..  ..-.+.++.+.         +.++.+....  .+..  . 
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~l~  100 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ--KKLTGLLK  100 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG--HHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC--CCCccHHH
Confidence            35789999999999887641  1  1233334444433  11112222223         6666655421  1111  1 


Q ss_pred             --HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----chHHHHHHHHHHhccCchHHHHHHHHHHhcc----CC-C-c
Q 018876           65 --TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RP----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-E-P  131 (349)
Q Consensus        65 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~  131 (349)
                        .+......+...|++++|...+++..+... .+    ...++..+..+|...|+++.|...+++..+.    +. . .
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence              223344566789999999999999876511 11    2457788889999999999999999887753    11 1 1


Q ss_pred             chhhHHHHHHHHHccCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 018876          132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-----YHYSW  201 (349)
Q Consensus       132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~  201 (349)
                      ...+++.+...|...|++++|.+.+.+..+.    +.. ....++..+...+...|++++|...+++..+     .... 
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-  259 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-  259 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-
Confidence            3567788889999999999999999987653    111 1245677888999999999999999998876     4333 


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER----IKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTV  274 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~  274 (349)
                      ...++..+...+.+.|++++|...+++..+..    -+.....+..+...+...++   ..+|...++....  ......
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~  337 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEA  337 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHH
Confidence            47788889999999999999999999987642    22223455666666777777   6667766665321  122345


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+..+...|...|++++|...|++..+.
T Consensus       338 ~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          338 CARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            6778999999999999999999988653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.52  E-value=2.8e-11  Score=100.62  Aligned_cols=264  Identities=9%  Similarity=0.030  Sum_probs=159.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchh----hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHh
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQ----SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLK   75 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~   75 (349)
                      ..|++++|...+++..+.....+..    +++.+...+...|++++|.+.+++......-.++.    .++..+...+..
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            4677888888887776653111211    45556666777788888888877765431111222    224556667777


Q ss_pred             cCChhHHHHHHHHHHhC----CCC--C-chHHHHHHHHHHhccCchHHHHHHHHHHhccCCC----cchhhHHHHHHHHH
Q 018876           76 AFAFDKVQALLSDMSTQ----GIR--P-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE----PDVWTMNCTLRAFG  144 (349)
Q Consensus        76 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~  144 (349)
                      .|++++|...+++....    +..  | ....+..+...+...|++++|...+++.......    .....+..+...+.
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            78888888877776543    211  2 2344555667777778888888888776644211    12244566667777


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHh
Q 018876          145 NSGQIDTMEKCYEKFQSAGIQPS--INTFN----ILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGR  215 (349)
Q Consensus       145 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~  215 (349)
                      ..|++++|...+++.......++  .....    ..+..+...|++++|...+++.......+   ....+..+...+..
T Consensus       186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  265 (373)
T 1hz4_A          186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL  265 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence            78888888888877654311111  11111    22334667788888888877765543221   12245566677777


Q ss_pred             cCChHHHHHHHHHHHhC----CCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018876          216 AGDLKQMEYLFRLMRSE----RIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      .|++++|...++.....    +..++. ..+..+..++...|+.++|...++.....
T Consensus       266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            78888888877776432    211222 25555666777778888888877777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=2.4e-12  Score=114.91  Aligned_cols=165  Identities=8%  Similarity=-0.015  Sum_probs=83.8

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018876          133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA  212 (349)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  212 (349)
                      ...++.+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4445555555555555555555555555542 224445555555555555555555555555544322 34455555555


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  292 (349)
                      +...|++++|++.|++..+.. +-+...+..+..++...|++++|+..++++.+..+. +...+..+..+|...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence            555555555555555554432 223444555555555555555555555555444321 344445555555555555555


Q ss_pred             HHHHHHHHh
Q 018876          293 KGVLEVMQQ  301 (349)
Q Consensus       293 ~~~~~~~~~  301 (349)
                      .+.++++.+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.51  E-value=5.5e-12  Score=93.63  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG  249 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  249 (349)
                      .+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            344444555555555555555555544332 244455555555555555555555555554432 234455555555555


Q ss_pred             hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH
Q 018876          250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      ..|++++|...++.+..... .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666655554432 244555556666666666666666666665553 2245556666666666666666666


Q ss_pred             HHHHHHHhHH
Q 018876          330 FQDLVEKMDE  339 (349)
Q Consensus       330 ~~~~~~~~~~  339 (349)
                      .++...+..+
T Consensus       166 ~~~~~~~~~~  175 (186)
T 3as5_A          166 HFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHcCC
Confidence            6666655543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=5.5e-12  Score=93.63  Aligned_cols=166  Identities=16%  Similarity=0.107  Sum_probs=106.8

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID  106 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  106 (349)
                      ...+..+...+...|++++|...++++....  +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            3455666667777777777777777776543  4456667777777777777777777777776653 335556666666


Q ss_pred             HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (349)
                      .+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            6777777777777777666543 3345555666666666666666666666666553 3345556666666666666666


Q ss_pred             HHHHHHHHHhc
Q 018876          187 MSAVMEYMQKY  197 (349)
Q Consensus       187 a~~~~~~~~~~  197 (349)
                      |...++++.+.
T Consensus       163 A~~~~~~~~~~  173 (186)
T 3as5_A          163 ALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66666665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.46  E-value=8.1e-12  Score=111.52  Aligned_cols=166  Identities=7%  Similarity=-0.003  Sum_probs=142.6

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD  176 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  176 (349)
                      +...|+.|..+|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            46788999999999999999999999998764 4457788889999999999999999999988874 336888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      ++...|++++|+..|++..+.... +...|+.+..++...|++++|+..|++..+.. +-+...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            999999999999999998887644 67889999999999999999999999988764 4457788889999999999999


Q ss_pred             HHHHHHHHhh
Q 018876          257 LGSVLRFIDN  266 (349)
Q Consensus       257 a~~~~~~~~~  266 (349)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998888765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=6.1e-11  Score=91.34  Aligned_cols=196  Identities=13%  Similarity=0.004  Sum_probs=132.5

Q ss_pred             CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876           96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL  175 (349)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  175 (349)
                      .|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35567777778888888888888888888876533666666667788888888888888888887764 33566777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cHHHHHHHHH
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTI-------VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP--SCVTLCSLVR  246 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  246 (349)
                      ..+...|++++|...+++..+..+. +.       ..|..+...+...|++++|...+++..+.. +.  +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            8888888888888888888776533 34       456667777777888888888888877643 22  3456666666


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ++...|     ...++.+...+. .+...|....  ....+.+++|...+++..+.
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            665433     334444444432 1233333322  33445677888888887776

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.45  E-value=2e-12  Score=102.95  Aligned_cols=229  Identities=12%  Similarity=0.026  Sum_probs=160.1

Q ss_pred             CCCCChHHHHHHHHHHHhc-------CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC------CCCCCCHHHHHHH
Q 018876            3 GKCKQPEKAHELFQAMVDE-------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT------PDCQPDVNTYSIL   69 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l   69 (349)
                      ...|++++|+..|++..+.       ..+....++..+...+...|++++|...++++...      +..+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567888888888776652       22234677889999999999999999999988754      2213345678889


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC------C-CCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc------C-CCcchhh
Q 018876           70 IKSCLKAFAFDKVQALLSDMSTQ------G-IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D-CEPDVWT  135 (349)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~  135 (349)
                      ...+...|++++|...+.+....      . .+....++..+...+...|++++|...+++..+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998765      1 1234667888999999999999999999988765      1 1234567


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCC
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSA-------GIQPS-INTFNILLDSYGKAGHF------EKMSAVMEYMQKYHYSW  201 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~  201 (349)
                      +..+...+...|++++|...+++..+.       ...+. ...+..+.......+..      ..+...++..... .+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence            888999999999999999999988763       11222 22333333333332222      2222222222111 122


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      ...++..+...+...|++++|..++++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4567888999999999999999999988653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.45  E-value=5.3e-12  Score=100.48  Aligned_cols=30  Identities=10%  Similarity=0.075  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      ...++..+...|...|++++|...+++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345666677777777777777777776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=3.4e-11  Score=92.82  Aligned_cols=199  Identities=10%  Similarity=-0.002  Sum_probs=156.0

Q ss_pred             cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876          131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI  210 (349)
Q Consensus       131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  210 (349)
                      .++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4567788888999999999999999999998865467788888999999999999999999999887644 678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHH
Q 018876          211 DAFGRAGDLKQMEYLFRLMRSERIKPSC-------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVD  281 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~  281 (349)
                      ..+...|++++|...+++..+.. +.+.       ..|..+...+...|++++|...++.+.+..+ .  +...|..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence            99999999999999999998764 3334       4577888889999999999999999988642 2  3567777888


Q ss_pred             HHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      +|...|     ..+++.+...+. .+...+....  ....+.+++|...++...++.+.
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence            876654     344555555532 2444444443  34456789999999988887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.41  E-value=5.4e-09  Score=92.48  Aligned_cols=120  Identities=13%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh--
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF--   79 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--   79 (349)
                      .+.++.+..+|+++... +|.....|..-+..-.+.++   ++.+..+|++.......+|++..|..-+....+.++.  
T Consensus        79 ~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~  157 (679)
T 4e6h_A           79 LKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT  157 (679)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred             cCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence            56778888888888876 46667778877777777777   8888888888877632237887877777665555443  


Q ss_pred             ------hHHHHHHHHHHh-CCC-CCc-hHHHHHHHHHHhc---------cCchHHHHHHHHHHh
Q 018876           80 ------DKVQALLSDMST-QGI-RPN-TVTYNTLIDAYGR---------AKMFAEMELTLVKML  125 (349)
Q Consensus        80 ------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  125 (349)
                            +.+.++|+.... .|. .++ ...|...+.....         .++.+.+..+|++.+
T Consensus       158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence                  234466666554 355 443 4566666554322         223444555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=4.1e-11  Score=96.02  Aligned_cols=207  Identities=13%  Similarity=0.032  Sum_probs=112.9

Q ss_pred             ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCCcc-hhhHHHHHHHHHccCCHHHH
Q 018876           78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCEPD-VWTMNCTLRAFGNSGQIDTM  152 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a  152 (349)
                      ++++|...|.+.               ...|...|++++|...|++....    +-+++ ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366666666554               23455667777777777666543    21111 45666677777777777777


Q ss_pred             HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-c----hHHHHHHHHHHHhcCChHH
Q 018876          153 EKCYEKFQSAGI---QP--SINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-T----IVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       153 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  221 (349)
                      ...+++..+...   .+  ...++..+...|... |++++|+..|++..+..... +    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            777776654310   11  133566666666664 77777777776665432110 0    2456666666777777777


Q ss_pred             HHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hH---HHHHHHHHHHH--ccCCh
Q 018876          222 MEYLFRLMRSERIKPSC------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DT---VFFNCLVDAYG--RLKCF  289 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~li~~~~--~~g~~  289 (349)
                      |...+++..+.......      ..+..+..++...|++++|...++...+..+.. +.   ..+..++.++.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            77777766654322111      134555666666777777777777666543211 11   12233344443  23455


Q ss_pred             HHHHHHHHHH
Q 018876          290 AEMKGVLEVM  299 (349)
Q Consensus       290 ~~a~~~~~~~  299 (349)
                      ++|+..|+.+
T Consensus       257 ~~A~~~~~~~  266 (292)
T 1qqe_A          257 SEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHhccC
Confidence            5555555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=1.3e-09  Score=85.96  Aligned_cols=244  Identities=7%  Similarity=0.030  Sum_probs=163.2

Q ss_pred             HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876           34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM  113 (349)
Q Consensus        34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (349)
                      ++-..-.|++..++.-...+...   .++ ....-+.+++...|++...         ..-.|....+..+...+ ..+ 
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~~---~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSKV---TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSCC---CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred             HHHHHHhhHHHHHHHHHHhcCcc---chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence            34455678999888844433321   232 3334455778888877642         12234444555444444 322 


Q ss_pred             hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876          114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVME  192 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  192 (349)
                         |...+++....+ .++...+..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++
T Consensus        85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~  160 (310)
T 3mv2_B           85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD  160 (310)
T ss_dssp             ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence               677788877665 45555566788888899999999999998877653 2367778888899999999999999999


Q ss_pred             HHHhcCCCC-----chHHHHHHHHHHH--h--cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018876          193 YMQKYHYSW-----TIVTYNIVIDAFG--R--AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF  263 (349)
Q Consensus       193 ~~~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  263 (349)
                      +|.+..  |     +..+...++.++.  .  .+++.+|..+|+++.+.  .|+..+...++.++...|++++|...++.
T Consensus       161 ~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          161 NYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            998764  4     3455555665532  2  33889999999998654  35433333444478889999999999987


Q ss_pred             HhhCC---------CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          264 IDNSD---------IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       264 ~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +.+..         -+-++.+...+|......|+  +|.++++++.+.
T Consensus       237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            65531         02366777556666666676  788889988886

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=2.6e-09  Score=84.28  Aligned_cols=60  Identities=12%  Similarity=0.047  Sum_probs=26.8

Q ss_pred             HHHHHHHhccCchHHHHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876          102 NTLIDAYGRAKMFAEMELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus       102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      ..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3444444444555555555444433321 12333444444444445555555555544444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.32  E-value=1e-08  Score=90.78  Aligned_cols=206  Identities=12%  Similarity=-0.005  Sum_probs=139.9

Q ss_pred             hhhHHHHHHHHHccCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CC-
Q 018876          133 VWTMNCTLRAFGNSGQIDTME-KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------SW-  201 (349)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~-  201 (349)
                      ...|...+..+...|+.++|. ++|++.... .+.+...|..++...-+.|+++.|..+|+.+.....         .| 
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            334444444455667777786 888887765 345666677777888888888888888888765310         12 


Q ss_pred             -----------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHhhCCC
Q 018876          202 -----------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-GKPEKLGSVLRFIDNSDI  269 (349)
Q Consensus       202 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~  269 (349)
                                 ....|...+....+.|+.+.|..+|..+.+.....+...|...+..-.+. ++.+.|..+|+...+.- 
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-  500 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-  500 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-
Confidence                       13357777777777888888888888887651112233343333222233 45888888888877652 


Q ss_pred             CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      +-+...|...+......|+.+.|..+|++.......+  ....|...+.--.+.|+.+.+..+.+++.+..+.
T Consensus       501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3356667778887788889999999999888764321  3467777877778889888888888888776553

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.30  E-value=5.9e-10  Score=87.72  Aligned_cols=187  Identities=6%  Similarity=-0.041  Sum_probs=118.9

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCchH
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTV   99 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~   99 (349)
                      .+...+..+...+.+.|++++|+..|+.+....  +.+   ...+..+..++.+.|++++|...|++..+...  +....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            456777788888899999999999999998763  223   57788888899999999999999999888632  12245


Q ss_pred             HHHHHHHHHhc--------cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018876          100 TYNTLIDAYGR--------AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF  171 (349)
Q Consensus       100 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (349)
                      .+..+..++..        .|++++|...|+++.... +.+......+.              .+..+...    -...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence            66677778877        899999999999888763 21222221110              00000000    01113


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 018876          172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRA----------GDLKQMEYLFRLMRSE  232 (349)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  232 (349)
                      ..+...+.+.|++++|...|+.+.+..+..  ....+..+..++...          |++++|...++.+.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            445556666666666666666665543221  234455555555544          6666677776666554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=5.5e-10  Score=89.45  Aligned_cols=159  Identities=8%  Similarity=-0.050  Sum_probs=71.2

Q ss_pred             HHccCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C--chHHHHHHHHH
Q 018876          143 FGNSGQIDTMEKCYEKFQSA----GIQPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS---W--TIVTYNIVIDA  212 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~  212 (349)
                      |...|++++|...|.+..+.    |.+++ ..+|+.+..+|...|++++|+..+++..+....   +  -..+++.+...
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44455555555555544332    11111 334555555555555555555555544332110   0  02344455555


Q ss_pred             HHhc-CChHHHHHHHHHHHhCCC---CC-c-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH------HHHHHHH
Q 018876          213 FGRA-GDLKQMEYLFRLMRSERI---KP-S-CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT------VFFNCLV  280 (349)
Q Consensus       213 ~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li  280 (349)
                      |... |++++|...+++..+...   .+ . ..++..+...+...|++++|...++.+.+..+....      ..|..+.
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            5553 555555555555443210   00 0 233445555555555555555555555443221111      1344444


Q ss_pred             HHHHccCChHHHHHHHHHHHh
Q 018876          281 DAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      .++...|++++|...|++...
T Consensus       207 ~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          207 LCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHcCCHHHHHHHHHHHHh
Confidence            555555555555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.29  E-value=6.4e-10  Score=84.27  Aligned_cols=132  Identities=10%  Similarity=-0.017  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018876          174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK  253 (349)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  253 (349)
                      +..++.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            777788888888888888888777643 67788888888888888888888888887764 4456677777777665543


Q ss_pred             --hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHH
Q 018876          254 --PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY  311 (349)
Q Consensus       254 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  311 (349)
                        .+.+...+..+..  ..|....+.....++...|++++|...|++..+.  .|+....
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~  193 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence              3334445544432  2333334445566677788888898888888875  5665433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=6.8e-10  Score=87.36  Aligned_cols=186  Identities=9%  Similarity=-0.042  Sum_probs=117.1

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHH
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD---VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTF  171 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  171 (349)
                      +...+..+...+.+.|++++|...|+++.... +.+   ...+..+..++...|++++|...|+++.+...  +.....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            45556666667777777777777777777653 222   45566677777777777777777777776532  1123455


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018876          172 NILLDSYGK--------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS  243 (349)
Q Consensus       172 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  243 (349)
                      ..+..++..        .|++++|...|+++.+..+. +......+..              +..+...    ....+..
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~  153 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence            566666666        77777777777777665422 2222211111              0000000    0112456


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhc
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRL----------KCFAEMKGVLEVMQQR  302 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~  302 (349)
                      +...+...|++++|...++.+.+..+..  ....+..+..+|...          |++++|...|+.+.+.
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            6778888899999999998887654321  345677778888766          8889999999988876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=4.4e-10  Score=78.42  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 018876           29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY  108 (349)
Q Consensus        29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (349)
                      +|..+...+...|++++|..+++++.+..  +.+...+..+...+...|++++|...++++...+ +.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            34555555666666666666666655432  3345555555566666666666666666655543 22344455555555


Q ss_pred             hccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876          109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus       109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      ...|++++|.+.++++.... +.+...+..+...+...|++++|...+.++.+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            55555555555555555432 22334444455555555555555555555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=9e-10  Score=76.79  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018876          173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG  252 (349)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  252 (349)
                      .+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.... +.+...+..+...+...|
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence            3344444444444444444444433211 33344444444444444444444444443332 222333444444444444


Q ss_pred             ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      ++++|...++.+..... .+...+..+...+...|++++|...++++..
T Consensus        84 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           84 DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            44444444444443321 1233444444444444444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.25  E-value=3.8e-10  Score=101.08  Aligned_cols=174  Identities=9%  Similarity=-0.062  Sum_probs=145.1

Q ss_pred             hccCchHHHHHHHHHHh--------ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018876          109 GRAKMFAEMELTLVKML--------SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK  180 (349)
Q Consensus       109 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (349)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            77899999999999988        332 4456778888899999999999999999998874 4478889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018876          181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV  260 (349)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  260 (349)
                      .|++++|...|++..+..+. +...+..+..++...|++++ ...|++..+.. +.+...+..+..++...|++++|...
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999887644 67888999999999999999 99999998765 45678899999999999999999999


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018876          261 LRFIDNSDIMLDTVFFNCLVDAYGRLKC  288 (349)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~  288 (349)
                      ++++.+.+.. +...+..+..++...++
T Consensus       557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            9999886542 56777778888766554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=4.7e-10  Score=100.53  Aligned_cols=173  Identities=9%  Similarity=-0.112  Sum_probs=145.1

Q ss_pred             HccCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876          144 GNSGQIDTMEKCYEKFQ--------SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR  215 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (349)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|...++++.+.... +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            78899999999999988        432 446778888999999999999999999999887644 78899999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHH
Q 018876          216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV  295 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  295 (349)
                      .|++++|...|++..+.. +.+...+..+..++...|++++ ...++.+.+.++. +...|..+..++.+.|++++|...
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999998765 4456888899999999999999 9999999887653 677899999999999999999999


Q ss_pred             HHHHHhcCCCCC-HHHHHHHHHHHHccCc
Q 018876          296 LEVMQQRGCKPD-KVTYRTMVRAYSTNGM  323 (349)
Q Consensus       296 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  323 (349)
                      |++..+.  .|+ ...+..+..++...|+
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            9988876  444 5677777777766555

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.23  E-value=8.2e-08  Score=76.47  Aligned_cols=217  Identities=6%  Similarity=-0.061  Sum_probs=134.1

Q ss_pred             hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC--chHHHHHHHHHHhccCCCcchhhHHHHHHHH----Hcc---CCHH
Q 018876           80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAF----GNS---GQID  150 (349)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~  150 (349)
                      ++|+.+++.++... +-+...|+.--.++...+  +++++++.++.+.... +-+..+|+.--..+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            45666666655542 123344555555555555  6666666666666543 22333444333333    333   5667


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC------hHHH
Q 018876          151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE--KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD------LKQM  222 (349)
Q Consensus       151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a  222 (349)
                      +++.+++.+.+.. +-+..+|+.-.-.+.+.|.++  +++..++++.+.++. +...|+.-...+...+.      ++++
T Consensus       128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence            7777777777664 336666666666666666666  777777777766644 66666666555555555      6777


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh-HHHHHHHHhhCC--CCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876          223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK-LGSVLRFIDNSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM  299 (349)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  299 (349)
                      ++.++.+.... +-|...|+.....+.+.|+... +..+...+.+.+  -..++..+..+...|.+.|+.++|.++++.+
T Consensus       206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            77777777654 5566777777777777776433 455666655432  1236677788888888888888888888888


Q ss_pred             Hh
Q 018876          300 QQ  301 (349)
Q Consensus       300 ~~  301 (349)
                      .+
T Consensus       285 ~~  286 (306)
T 3dra_A          285 KS  286 (306)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.22  E-value=3.8e-09  Score=80.21  Aligned_cols=176  Identities=10%  Similarity=0.010  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 018876           10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----AFDKVQAL   85 (349)
Q Consensus        10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~   85 (349)
                      +|.+.|++..+.|   ++.++..+...|...+++++|++.|++..+.    -+...+..+...+.. +    ++++|..+
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            4566666666654   5666777777777777777777777777654    245556666666665 5    67777777


Q ss_pred             HHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCC-cchhhHHHHHHHHHc----cCCHHHHHHHH
Q 018876           86 LSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCE-PDVWTMNCTLRAFGN----SGQIDTMEKCY  156 (349)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~  156 (349)
                      |++..+.|   +...+..|...|..    .+++++|...|++..+.+.. .....+..+...|..    .+++++|..+|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            77776654   45556666666655    56677777777776665421 124455555555555    55666666666


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 018876          157 EKFQSAGIQPSINTFNILLDSYGKA-G-----HFEKMSAVMEYMQKYH  198 (349)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  198 (349)
                      ++..+.+  .+...+..|...|... |     +.++|...|+...+.|
T Consensus       153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            6666541  1233444455554432 2     5666666666665554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.21  E-value=2.1e-09  Score=81.38  Aligned_cols=187  Identities=8%  Similarity=-0.015  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876           64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA  142 (349)
Q Consensus        64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  142 (349)
                      ..+......+...|++++|...|++..+.  .|+. ..|...  .   .              .............+..+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~--~---~--------------~~~~~~~~~~~~~lg~~   63 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT--N---V--------------DKNSEISSKLATELALA   63 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH--H---S--------------CTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh--h---h--------------cchhhhhHHHHHHHHHH
Confidence            34444555666777888888877777765  2332 222210  0   0              00001112223447778


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC--hH
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LK  220 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~  220 (349)
                      +...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|+  ..
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence            888899999999998888874 347788888888888999999999999888887643 67778878777765543  33


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018876          221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN  277 (349)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  277 (349)
                      .+...++....  ..|....+.....++...|++++|...|++..+..  |+.....
T Consensus       142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~  194 (208)
T 3urz_A          142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQK  194 (208)
T ss_dssp             HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHH
T ss_pred             HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHH
Confidence            44555555432  23333344445566677888999999999888754  4544333

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.21  E-value=4.9e-08  Score=77.73  Aligned_cols=236  Identities=10%  Similarity=-0.001  Sum_probs=179.0

Q ss_pred             HcCC-ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCchHHHHHHHHHH----hc
Q 018876           38 GRSG-LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--AFDKVQALLSDMSTQGIRPNTVTYNTLIDAY----GR  110 (349)
Q Consensus        38 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~  110 (349)
                      .+.| ..++|+++++.+....  +-+..+|+.--.++...+  ++++++.+++.+..... -+..+|+.--..+    ..
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence            3444 4568999999988763  456677888888888888  99999999999988743 3556666544444    44


Q ss_pred             c---CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--
Q 018876          111 A---KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID--TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH--  183 (349)
Q Consensus       111 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  183 (349)
                      .   +++++++..++++.+.. +-+...|+.-.-.+.+.|.++  ++++.++++.+.... |...|+.-...+.+.+.  
T Consensus       120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred             ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence            4   78899999999999875 557778887777777888888  999999999988644 77788777666777666  


Q ss_pred             ----HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhh
Q 018876          184 ----FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ-MEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       184 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                          ++++++.++++....+. |...|+.+-..+.+.|+... +..+...+.+.+  -+.+...+..+...+.+.|+.++
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~  276 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE  276 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence                88899999998888755 88999888888888887444 556666665432  23467788889999999999999


Q ss_pred             HHHHHHHHhh-CCCCchHHHHHHHH
Q 018876          257 LGSVLRFIDN-SDIMLDTVFFNCLV  280 (349)
Q Consensus       257 a~~~~~~~~~-~~~~~~~~~~~~li  280 (349)
                      |.++++.+.+ .+ +.....|+..+
T Consensus       277 A~~~~~~l~~~~D-pir~~yW~~~~  300 (306)
T 3dra_A          277 SRTVYDLLKSKYN-PIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred             HHHHHHHHHhccC-hHHHHHHHHHH
Confidence            9999999886 34 34556666544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.18  E-value=8.5e-10  Score=78.76  Aligned_cols=122  Identities=4%  Similarity=-0.091  Sum_probs=59.9

Q ss_pred             HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (349)
                      .+...|++++|+..+++..... +.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..++...|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            3344455555555555554331 1223334445555555555555555555555543 2245555555555555555555


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 018876          187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL-FRLMRS  231 (349)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~  231 (349)
                      |...|++..+..+. +...+..+...+.+.|++++|... +++..+
T Consensus        84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            55555555554322 344555555555555555443332 344443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=5.1e-10  Score=79.94  Aligned_cols=142  Identities=2%  Similarity=-0.124  Sum_probs=75.3

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                      .+...|++++|+..+....... +.+...+..+...|.+.|++++|...|++..+..+. +...|..+..++...|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence            3444555666666665554431 112334445556666666666666666666555433 55566666666666666666


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH-HHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV-LRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      |...|+...+.. +-+...+..+...+...|+.++|.+. ++.+.+..+. ++.+|......+...|
T Consensus        84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            666666665543 23345555566666666665544433 3555544322 4445554444444444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=4.1e-09  Score=84.07  Aligned_cols=166  Identities=6%  Similarity=-0.109  Sum_probs=119.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH-HHH
Q 018876          165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT-LCS  243 (349)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~  243 (349)
                      +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++.+....  |+... ...
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            445566667777778888888888888888776543 66777788888888888888888888776543  33332 222


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccC
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNG  322 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  322 (349)
                      ....+...++.+.|...++......+ .+...+..+...+...|++++|...|+++.+..... +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            23335566777778888888777654 366777788888888888888888888888764321 2567788888888888


Q ss_pred             chhhhHHHHHHH
Q 018876          323 MKNHAKEFQDLV  334 (349)
Q Consensus       323 ~~~~a~~~~~~~  334 (349)
                      +.++|...+++.
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            888887776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=8.1e-09  Score=78.36  Aligned_cols=159  Identities=11%  Similarity=-0.003  Sum_probs=67.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG----HFEKMSAVMEYMQKYHYSWTIVTYNIVID  211 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  211 (349)
                      +..+...|...+++++|.++|++..+.|   +...+..+...|.. +    +.++|...|++..+.+   ++..+..+..
T Consensus        21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~   93 (212)
T 3rjv_A           21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR   93 (212)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            3333334444444444444444444332   22333333333333 3    4444444444443332   3334444444


Q ss_pred             HHHh----cCChHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          212 AFGR----AGDLKQMEYLFRLMRSERIK-PSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       212 ~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      .|..    .+++++|...|++..+.+.. .+...+..+...|..    .+++++|...++...+.+  .+...+..|...
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~  171 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMM  171 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            4433    44455555555544443311 013344444444444    445555555555554431  122233444444


Q ss_pred             HHcc-C-----ChHHHHHHHHHHHhcC
Q 018876          283 YGRL-K-----CFAEMKGVLEVMQQRG  303 (349)
Q Consensus       283 ~~~~-g-----~~~~a~~~~~~~~~~~  303 (349)
                      |... |     ++++|...|+...+.|
T Consensus       172 y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          172 FQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            4332 1     4555555555555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.16  E-value=1e-09  Score=80.73  Aligned_cols=60  Identities=15%  Similarity=0.009  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCchhhhHHHHH
Q 018876          273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQD  332 (349)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~  332 (349)
                      ...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...++
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            3344444444444444444444444444432211 12334444444444444444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.15  E-value=3.8e-09  Score=84.26  Aligned_cols=179  Identities=8%  Similarity=-0.075  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876          115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM  194 (349)
Q Consensus       115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (349)
                      +...+.+....    +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++
T Consensus       103 ~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          103 EAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            33444444443    4455667777888889999999999999988874 347778888899999999999999999988


Q ss_pred             HhcCCCCchHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-h
Q 018876          195 QKYHYSWTIVTYN-IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-D  272 (349)
Q Consensus       195 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~  272 (349)
                      ....+  +..... .....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...+..+....+.. +
T Consensus       178 ~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~  254 (287)
T 3qou_A          178 PLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD  254 (287)
T ss_dssp             CGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred             chhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence            76643  333222 22334567777888888888887765 5667888889999999999999999999988765432 3


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      ...+..++..|...|+.++|...+++...
T Consensus       255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          255 GQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            67888899999999999999888877653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.15  E-value=1.4e-09  Score=95.74  Aligned_cols=154  Identities=10%  Similarity=-0.057  Sum_probs=116.4

Q ss_pred             CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876            5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA   84 (349)
Q Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   84 (349)
                      .|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.|++..+..  +.+...+..+..++...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            478899999999988763 4567889999999999999999999999998864  4568889999999999999999999


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 018876           85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---GQIDTMEKCYEKFQS  161 (349)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~  161 (349)
                      .+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+...   |+.++|.+.+++..+
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            999988874 3367788889999999999999999999988765 44567788888888888   999999999999887


Q ss_pred             cC
Q 018876          162 AG  163 (349)
Q Consensus       162 ~~  163 (349)
                      .+
T Consensus       157 ~~  158 (568)
T 2vsy_A          157 QG  158 (568)
T ss_dssp             HT
T ss_pred             cC
Confidence            75

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.14  E-value=1.1e-08  Score=78.41  Aligned_cols=186  Identities=13%  Similarity=0.056  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch---HHHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT---VTYN  102 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~  102 (349)
                      ...+..+...+.+.|++++|+..|+++....+..|. ...+..+..++.+.|++++|...|+++.+.... +.   ..+.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence            345556666777778888888888877764211121 356667777788888888888888887765321 11   1333


Q ss_pred             HHHHHHh------------------ccCchHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876          103 TLIDAYG------------------RAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAG  163 (349)
Q Consensus       103 ~l~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  163 (349)
                      .+..++.                  ..|++++|...|+++.+..  |+. ..+......          ..+...+    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence            3333333                  3567777777777777652  322 222111100          0000000    


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                          ......+...+.+.|++++|...|+++.+..+...  ...+..+..++.+.|++++|...++.+...+
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                01123456778888999999999998887653311  3567788888999999999999998887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.14  E-value=2e-09  Score=79.14  Aligned_cols=164  Identities=9%  Similarity=0.003  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH-
Q 018876          134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA-  212 (349)
Q Consensus       134 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-  212 (349)
                      ..+......+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+  +...+...... 
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~   83 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE   83 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence            345667788899999999999999987764 34778899999999999999999999999876643  44433332222 


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHccCChHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAE  291 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~  291 (349)
                      +...+....|...+++..+.. +.+...+..+...+...|++++|...++.+.+..+.+ +...+..+...+...|+.++
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            223233445788888887764 4467888999999999999999999999998876543 36688899999999999999


Q ss_pred             HHHHHHHHHh
Q 018876          292 MKGVLEVMQQ  301 (349)
Q Consensus       292 a~~~~~~~~~  301 (349)
                      |...|++...
T Consensus       163 A~~~y~~al~  172 (176)
T 2r5s_A          163 IASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.14  E-value=1.9e-07  Score=80.13  Aligned_cols=47  Identities=13%  Similarity=-0.029  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018876          150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY  197 (349)
Q Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (349)
                      +.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++....
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            34566777777653 446777888888888889999999999988877

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=2.1e-08  Score=76.84  Aligned_cols=206  Identities=8%  Similarity=-0.021  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHhccCCC-c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 018876           99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI--NTFNIL  174 (349)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l  174 (349)
                      ..+..+...+...|++++|...|+++...... | ....+..+..++.+.|++++|...|+++.+.......  ..+..+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            34444555666667777777777766654211 1 1234555666666667777777777666654321111  123333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCC
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAGK  253 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  253 (349)
                      ..++...+..     .            ...|..+...+...|++++|...|+++.+..  |+. .........      
T Consensus        85 g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l------  139 (225)
T 2yhc_A           85 GLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL------  139 (225)
T ss_dssp             HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH------
T ss_pred             HHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH------
Confidence            3333322110     0            0011112222334566777777777776542  222 111111000      


Q ss_pred             hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCchhhhHHHH
Q 018876          254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                          ..+...+        ......+...|.+.|++++|...|+++.+.....  ....+..+..++.+.|++++|.+.+
T Consensus       140 ----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          140 ----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             ----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence                0000000        0111235566777777777777777777652211  1245666777777777777777777


Q ss_pred             HHHHHhHHhh
Q 018876          332 DLVEKMDETC  341 (349)
Q Consensus       332 ~~~~~~~~~~  341 (349)
                      +.+....+..
T Consensus       208 ~~l~~~~~~~  217 (225)
T 2yhc_A          208 KIIAANSSNT  217 (225)
T ss_dssp             HHHHHCCSCC
T ss_pred             HHHHhhCCCc
Confidence            7666554433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.13  E-value=8.2e-09  Score=90.78  Aligned_cols=153  Identities=9%  Similarity=-0.051  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 018876          147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF  226 (349)
Q Consensus       147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  226 (349)
                      |++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            55666666666665542 224566666666666777777777777766665432 4566666666777777777777777


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc---CChHHHHHHHHHHHhcC
Q 018876          227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL---KCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~  303 (349)
                      ++..+.. +.+...+..+..++...|++++|...++...+... .+...+..+...+...   |++++|.+.+++..+.+
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            7666543 33456666677777777777777777777666543 2455666677777777   77777777777776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.13  E-value=3.6e-07  Score=78.43  Aligned_cols=311  Identities=10%  Similarity=-0.030  Sum_probs=193.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCC-hhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHH----hcCCh
Q 018876            6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCL----KAFAF   79 (349)
Q Consensus         6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~   79 (349)
                      |+++.+..+|++....  .|+...|...+....+.++ .+....+|+.....-|. +.+...|...+..+.    ..++.
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            6788888888888875  4788888888887766653 45567777776653221 346677777766543    24567


Q ss_pred             hHHHHHHHHHHhCCCCCchHHH------------------------------------------------HHHHHHHhcc
Q 018876           80 DKVQALLSDMSTQGIRPNTVTY------------------------------------------------NTLIDAYGRA  111 (349)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~------------------------------------------------~~l~~~~~~~  111 (349)
                      +.+..+|++.+.....--...|                                                ...+..-...
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            7788888888763111001111                                                1111111110


Q ss_pred             --C--c---hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876          112 --K--M---FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF  184 (349)
Q Consensus       112 --~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (349)
                        +  +   .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++....  +.+...+..    |....+.
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~  258 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDE  258 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTC
T ss_pred             CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcch
Confidence              0  0   233455666666543 445667777777888899999999999999988  334333332    2222221


Q ss_pred             HHHHHHHHHHHhcC------------CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-c
Q 018876          185 EKMSAVMEYMQKYH------------YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH-A  251 (349)
Q Consensus       185 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  251 (349)
                      ++.   ++.+.+.-            .......|...+....+.++.+.|..+|..+ ... ..+...|......-.. .
T Consensus       259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~  333 (493)
T 2uy1_A          259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT  333 (493)
T ss_dssp             THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred             hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence            222   22222110            0112355777777777788899999999998 321 2344444432222222 3


Q ss_pred             CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHH
Q 018876          252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ  331 (349)
Q Consensus       252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  331 (349)
                      ++++.|..+|+...+.... ++..+...+....+.|+.+.|..+|+.+.     .....|...+.--...|+.+.+..++
T Consensus       334 ~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~  407 (493)
T 2uy1_A          334 GSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV  407 (493)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4699999999998775322 34566677887888999999999999873     25778888888777889999998877


Q ss_pred             HHHHH
Q 018876          332 DLVEK  336 (349)
Q Consensus       332 ~~~~~  336 (349)
                      +...+
T Consensus       408 ~~~~~  412 (493)
T 2uy1_A          408 DQKMD  412 (493)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.12  E-value=3.2e-09  Score=85.64  Aligned_cols=61  Identities=7%  Similarity=-0.132  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD-TVFFNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                      ++..+...+...|++++|...++...+.    +..+. ...+..++..+...|++++|...|++..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3444444455555555555555444321    11111 1133334444444455555555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.11  E-value=3.4e-09  Score=85.45  Aligned_cols=200  Identities=8%  Similarity=-0.061  Sum_probs=118.8

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ   83 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   83 (349)
                      ..|++++|.+++++..+.. +..         .+...++++.|...|++.                ...+...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence            3577888888888877642 111         011146777777777654                34566778888888


Q ss_pred             HHHHHHHhC----CCCC-chHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHH
Q 018876           84 ALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTME  153 (349)
Q Consensus        84 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~  153 (349)
                      ..|.+....    +-.+ -..+|+.+..+|...|++++|...+++....    |-.. ...++..+...|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            877776543    1110 1346666777777777777777777765532    1111 13455666666666 7777777


Q ss_pred             HHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCc-hHHHHHHHHHHHhcCChHHHH
Q 018876          154 KCYEKFQSAGIQ---P--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY----SWT-IVTYNIVIDAFGRAGDLKQME  223 (349)
Q Consensus       154 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~  223 (349)
                      ..|++..+....   +  ...++..+...+.+.|++++|+..|++......    .+. ...+..+..++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            777766543100   0  134566666777777777777777766654311    111 124445555556667777777


Q ss_pred             HHHHHHH
Q 018876          224 YLFRLMR  230 (349)
Q Consensus       224 ~~~~~~~  230 (349)
                      ..+++..
T Consensus       216 ~~~~~al  222 (307)
T 2ifu_A          216 KCVRESY  222 (307)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7777665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.03  E-value=2.5e-07  Score=73.95  Aligned_cols=166  Identities=8%  Similarity=-0.102  Sum_probs=107.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC-CCch----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----HHHHHH
Q 018876          174 LLDSYGKAGHFEKMSAVMEYMQKYHY-SWTI----VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PS----CVTLCS  243 (349)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  243 (349)
                      .+..+...|++++|..++++..+... .|+.    ..+..+...+...+++++|...++++...... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35566777788888888777765432 1221    12334555566667888888888877763211 22    235777


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhh----C-CCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCCC-HHHHH
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDN----S-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD-KVTYR  312 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~  312 (349)
                      +...|...|++++|...++.+.+    . +..+ ...++..+...|.+.|++++|...+++..+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            77788888888888888877663    1 1112 2346777888888888888888888777643    21222 56777


Q ss_pred             HHHHHHHccCc-hhhhHHHHHHHHHhHH
Q 018876          313 TMVRAYSTNGM-KNHAKEFQDLVEKMDE  339 (349)
Q Consensus       313 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~  339 (349)
                      .+..+|...|+ +++|.+.++...++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            78888888884 5888888777766544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.00  E-value=1.1e-06  Score=70.83  Aligned_cols=247  Identities=6%  Similarity=-0.022  Sum_probs=141.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 018876           33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA  111 (349)
Q Consensus        33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (349)
                      +-......+..++|+++++.+....  +-+..+|+.--.++...+ .+++++.+++.+.... +-+..+|+.-..++.+.
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence            3333444555678888888888763  456667777777777777 5888888888888764 33666777665555554


Q ss_pred             -C-chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876          112 -K-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID--------TMEKCYEKFQSAGIQPSINTFNILLDSYGKA  181 (349)
Q Consensus       112 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (349)
                       + ++++++.+++++.+.. +.+...|+.-.-.+.+.|.++        ++++.++++.+..+ -|...|+.....+.+.
T Consensus       137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred             cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence             5 6788888888888765 445566665555554444444        67777777776643 3666666666666555


Q ss_pred             CC-------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018876          182 GH-------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ--MEYLFRLMRSERIKPSCVTLCSLVRAYGHAG  252 (349)
Q Consensus       182 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  252 (349)
                      ++       ++++++.++++....+. |...|+-+-..+.+.|+...  ...++   ...+...+ ..            
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~------------  277 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PD------------  277 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------
T ss_pred             cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---cccccccc-cc------------
Confidence            54       45666666666555433 55566555544444443200  00000   00000000 00            


Q ss_pred             ChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          253 KPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       253 ~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                       ......+...+....     -.+++..+..++..|...|+.++|.++++.+.+.
T Consensus       278 -~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          278 -IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence             011111111121111     1346777777888888888888888888887643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.99  E-value=7.7e-08  Score=72.91  Aligned_cols=128  Identities=8%  Similarity=-0.032  Sum_probs=80.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR  215 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (349)
                      +..+...+...|++++|...+++..    .|+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence            4445556667777777777776653    44666777777777777777777777777666542 256666677777777


Q ss_pred             cCChHHHHHHHHHHHhCCCCC---------------cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          216 AGDLKQMEYLFRLMRSERIKP---------------SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      .|++++|...++...+.....               ....+..+..++...|++++|...++.+.+..
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            777777777777766543110               11445555566666666666666666665543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=5.4e-08  Score=77.89  Aligned_cols=209  Identities=7%  Similarity=0.016  Sum_probs=146.6

Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHH
Q 018876           13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT---YSILIKSCLKAFAFDKVQALLSDM   89 (349)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~   89 (349)
                      ..+..+......|+..+...+...+.-.-     ..++..-.     ..+...   +...+..+...|++++|..++++.
T Consensus        32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~  101 (293)
T 3u3w_A           32 SEVSRIESGAVYPSMDILQGIAAKLQIPI-----IHFYEVLI-----YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE  101 (293)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHHHHHTCCT-----HHHHHTTT-----SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHhCcCH-----HHHhCCCC-----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34555655445688888888877765432     12222111     222333   334467788999999999999998


Q ss_pred             HhCC-CCCch----HHHHHHHHHHhccCchHHHHHHHHHHhccCCC-cc----hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876           90 STQG-IRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-PD----VWTMNCTLRAFGNSGQIDTMEKCYEKF  159 (349)
Q Consensus        90 ~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~  159 (349)
                      .+.. ..|+.    ..+..+...+...+++++|...+++....... ++    ..+++.+...|...|++++|...++++
T Consensus       102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  181 (293)
T 3u3w_A          102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI  181 (293)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8753 22332    23445777888888999999999999874322 22    236888999999999999999999998


Q ss_pred             Hh----c-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-chHHHHHHHHHHHhcCC-hHHHHHHHH
Q 018876          160 QS----A-GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSW-TIVTYNIVIDAFGRAGD-LKQMEYLFR  227 (349)
Q Consensus       160 ~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~  227 (349)
                      .+    . +..+ ...++..+...|.+.|++++|...+++..+..    ..+ -..+|..+..++...|+ +++|...++
T Consensus       182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~  261 (293)
T 3u3w_A          182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK  261 (293)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            74    1 2122 23478889999999999999999998876432    111 26788889999999995 699999988


Q ss_pred             HHHh
Q 018876          228 LMRS  231 (349)
Q Consensus       228 ~~~~  231 (349)
                      +...
T Consensus       262 ~Al~  265 (293)
T 3u3w_A          262 KASF  265 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.98  E-value=1.3e-06  Score=70.48  Aligned_cols=240  Identities=7%  Similarity=-0.057  Sum_probs=137.8

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc-C-CHH
Q 018876           74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS-G-QID  150 (349)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~  150 (349)
                      .+.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+... + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            34455567888888888774 225556676666666666 4888888888888765 44566666666555555 5 777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC----
Q 018876          151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE--------KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD----  218 (349)
Q Consensus       151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  218 (349)
                      +++++++++.+.. +-|...|+.-.-.+.+.|.++        ++++.++++.+.++. |...|+.....+.+.++    
T Consensus       143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence            8888888887764 336666665555555444444        666777777666544 66666666666655554    


Q ss_pred             ---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018876          219 ---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK--LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       219 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  293 (349)
                         ++++++.++++.... +-|...|+.+-..+.+.|+...  ...++   ...+...+. .             .....
T Consensus       221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~-~-------------~~~~~  282 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNP-D-------------IETVE  282 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------------
T ss_pred             hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccccccc-c-------------chhHH
Confidence               455555555555443 3344555544444444443210  00000   000100000 0             01122


Q ss_pred             HHHHHHHhcC-----CCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          294 GVLEVMQQRG-----CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       294 ~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                      ....++...+     -.++...+..++..|...|+.++|.++++.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            2222222211     13578888999999999999999999999886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.97  E-value=1.1e-07  Score=72.07  Aligned_cols=130  Identities=7%  Similarity=-0.055  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876           99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY  178 (349)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (349)
                      ..+..+...+...|++++|...+++..    .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence            345566677788888888888888774    5567788888888888889999988888888764 44677888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      ...|++++|...+++..+.....               ....+..+..++...|++++|...++...+..
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            88889999988888887764321               12677778888888888989988888887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.96  E-value=5.5e-07  Score=71.98  Aligned_cols=167  Identities=7%  Similarity=-0.057  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---Cc--hH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS---WT--IV  204 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~  204 (349)
                      .+...+..+...|++++|.+.+.+..+.....+     ...+..+...+...|++++|...+++..+....   +.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344456666777777777777776665432211     112333445566677888888888777643211   11  34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh---CC-CCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRS---ER-IKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDT  273 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~  273 (349)
                      +++.+...|...|++++|...+++..+   .. ..+  ...++..+...|...|++++|...++...+..     ...-.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            677777788888888888888877752   11 111  12467777888888888888888887765421     01125


Q ss_pred             HHHHHHHHHHHccCChHHH-HHHHHHHHh
Q 018876          274 VFFNCLVDAYGRLKCFAEM-KGVLEVMQQ  301 (349)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~  301 (349)
                      .+|..+...|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6777788888888888888 666666543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.96  E-value=5.1e-07  Score=72.15  Aligned_cols=171  Identities=8%  Similarity=-0.094  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCc--H
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-----IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---KPS--C  238 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~  238 (349)
                      ..+...+..+...|++++|...+.+..+......     ...+..+...+...|++++|...+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455667788999999999999988776543211     12344456667788999999999999875321   111  4


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhh---CC-CCc--hHHHHHHHHHHHHccCChHHHHHHHHHHHhcC----CCC-C
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDN---SD-IML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CKP-D  307 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~  307 (349)
                      .+++.+...|...|++++|...++.+.+   .. ..+  ...++..+...|...|++++|...+++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            5788999999999999999999988762   21 111  23588899999999999999999999887542    111 1


Q ss_pred             HHHHHHHHHHHHccCchhhh-HHHHHHHHHhHH
Q 018876          308 KVTYRTMVRAYSTNGMKNHA-KEFQDLVEKMDE  339 (349)
Q Consensus       308 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~  339 (349)
                      ..+|..+..+|...|++++| ...++....+..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            67788899999999999999 777776665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.95  E-value=8e-08  Score=69.53  Aligned_cols=133  Identities=8%  Similarity=-0.112  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      ..+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|...++...+... .+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            445555556666666666666666665543 33455666666667777777777777776665543 2456666777777


Q ss_pred             HccCChHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYR--TMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      ...|++++|...+++....... +...+.  .....+...|++++|.+.++....+..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence            7777777777777777765322 333442  233336667777777777776655543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.93  E-value=3.8e-08  Score=73.92  Aligned_cols=158  Identities=13%  Similarity=-0.030  Sum_probs=99.9

Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCchHHHHHHHHHHHhcCC
Q 018876          144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~  218 (349)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+++....    + .......+..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4567888888855554432 2235667777778888888888888888776552    1 11234566777777788888


Q ss_pred             hHHHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-chHHHHHHHHHHHHccC
Q 018876          219 LKQMEYLFRLMRSE----RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       219 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g  287 (349)
                      +++|...+++..+.    +-.+  ....+..+...+...|++++|...++.....    +.. ....++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            88888888776543    2111  2345666777777888888888877776532    111 11234566777777888


Q ss_pred             ChHHHHHHHHHHHhc
Q 018876          288 CFAEMKGVLEVMQQR  302 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~  302 (349)
                      ++++|...+++..+.
T Consensus       162 ~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          162 NLLEAQQHWLRARDI  176 (203)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            888888777766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.92  E-value=1.9e-08  Score=73.89  Aligned_cols=123  Identities=11%  Similarity=0.112  Sum_probs=85.0

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHhcCCh-
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS-CLKAFAF-   79 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-   79 (349)
                      +...|++++|...++...+.. +.+...|..+..++...|++++|...|++..+..  +.+...+..+..+ +...|++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence            345677788888888777663 4566777778888888888888888888777653  3456667777777 6677777 


Q ss_pred             -hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876           80 -DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED  128 (349)
Q Consensus        80 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  128 (349)
                       ++|...+++..... +.+...+..+..++...|++++|...++++....
T Consensus        97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence             88888888777763 2345667777777777888888888887777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.90  E-value=1.5e-07  Score=68.03  Aligned_cols=129  Identities=12%  Similarity=-0.091  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY  248 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  248 (349)
                      ..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            34555556666677777777777766665432 56666667777777777777777777766553 34456667777777


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCchHHHH--HHHHHHHHccCChHHHHHHHHHHH
Q 018876          249 GHAGKPEKLGSVLRFIDNSDIMLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                      ...|++++|...++.+.+.... +...+  ...+..+...|++++|...++...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            7777777777777777665432 33333  233333666777777777776554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.89  E-value=1.3e-08  Score=80.86  Aligned_cols=194  Identities=9%  Similarity=-0.062  Sum_probs=118.0

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      +...+..+...+...|++++|+..|++.....  +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            45667778888888888888888888887753  4467788888888888888888888888887763 33567777888


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF  184 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (349)
                      .++...|++++|...+++..+..  |+. ..+...+....+.   ..+. -+........+.+......+.. + ..|+.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~  151 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAER  151 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence            88888888888888888876542  211 1111111111111   1111 1222222333334444333322 2 25777


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 018876          185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDLKQMEYLFRLMRS  231 (349)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  231 (349)
                      ++|.+.++...+..+ .+......+...+.+. +.+++|.++|..+.+
T Consensus       152 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          152 ERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            777777776665532 1333333333334333 556777777776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.88  E-value=1.2e-07  Score=65.18  Aligned_cols=96  Identities=5%  Similarity=-0.111  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG  284 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  284 (349)
                      .+......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.++ .+...|..+..+|.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence            34444555555556666666555555443 33445555555556666666666666655555443 24455555666666


Q ss_pred             ccCChHHHHHHHHHHHhc
Q 018876          285 RLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       285 ~~g~~~~a~~~~~~~~~~  302 (349)
                      ..|++++|.+.|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            666666666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.87  E-value=3e-08  Score=74.49  Aligned_cols=121  Identities=12%  Similarity=0.019  Sum_probs=57.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHhcCCh
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT----PDCQPDVNTYSILIKSCLKAFAF   79 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~   79 (349)
                      ..|++++|.+.++.+... ......++..+...+...|++++|...+++....    +..+....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            456666666644444331 1124455666666666666666666666655431    00011233455555555556666


Q ss_pred             hHHHHHHHHHHhC----CCCC--chHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018876           80 DKVQALLSDMSTQ----GIRP--NTVTYNTLIDAYGRAKMFAEMELTLVKML  125 (349)
Q Consensus        80 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  125 (349)
                      ++|...+++....    +..+  ....+..+...+...|++++|...+++..
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            6665555554432    1011  12234444445555555555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.87  E-value=1.5e-07  Score=64.73  Aligned_cols=95  Identities=7%  Similarity=0.000  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG  214 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (349)
                      .+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.++. +...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence            34444444445555555555555444432 224444444444444555555555554444443322 3444444444444


Q ss_pred             hcCChHHHHHHHHHHHh
Q 018876          215 RAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~  231 (349)
                      ..|++++|...|++..+
T Consensus        93 ~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            44444444444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.87  E-value=1e-07  Score=67.72  Aligned_cols=97  Identities=14%  Similarity=0.039  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      ..+..+...+.+.|++++|...|+.+.... +.+...|..+..++...|++++|...|+.+.+..+. ++..|..+..+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            344445555555555555555555555443 334455555555555555555555555555554432 444555555556


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|...|++..+.
T Consensus       115 ~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666555554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.87  E-value=6.1e-08  Score=76.97  Aligned_cols=194  Identities=8%  Similarity=-0.016  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876           98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS  177 (349)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  177 (349)
                      ...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3444555555555666666666666555442 2344555555666666666666666666655543 2345556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018876          178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL  257 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  257 (349)
                      +...|++++|...|++..+..+. +...+...+....+.   ..+. -+........+.+......+ ..+ ..|+.++|
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A  154 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE  154 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence            66666666666666665543211 100111111111110   0111 11112222223333333322 222 25667777


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHcc-CChHHHHHHHHHHHh
Q 018876          258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQ  301 (349)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~  301 (349)
                      .+.++...+..+ .+......+...+.+. +.+++|.++|..+.+
T Consensus       155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          155 LEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            777766665432 2333334444444444 556677777766654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.87  E-value=2.1e-07  Score=72.45  Aligned_cols=127  Identities=6%  Similarity=-0.105  Sum_probs=65.4

Q ss_pred             HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHh
Q 018876          103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS--INTFNILLDSYGK  180 (349)
Q Consensus       103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~  180 (349)
                      .+...+...|++++|.+.|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++..
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            34445555566666666666555432  222233344445556666666666665433321 111  2245555566666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          181 AGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      .|++++|+..|++.......|  ..........++.+.|+.++|..+|+++...
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            666666666666655332212  2234444455555666666666666666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.86  E-value=2e-07  Score=63.66  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      ...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+.+... .+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence            3445555555555556666666555555432 23344555555556666666666666665554432 244555566666


Q ss_pred             HHccCChHHHHHHHHHHHhc
Q 018876          283 YGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +...|++++|...++++...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            66666666666666666554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.85  E-value=1.2e-07  Score=65.73  Aligned_cols=99  Identities=12%  Similarity=0.001  Sum_probs=56.1

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      +...+..+...+...|++++|...|++.....  +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   91 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence            44455556666666666666666666665542  3345555555566666666666666666655542 22445555555


Q ss_pred             HHHhccCchHHHHHHHHHHhcc
Q 018876          106 DAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      .++...|++++|.+.+++....
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHh
Confidence            5555556666666655555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.84  E-value=2.2e-07  Score=64.06  Aligned_cols=118  Identities=8%  Similarity=-0.058  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+..+ .+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence            3444455555555556666666555554432 23445555555556666666666666665555432 234555566666


Q ss_pred             HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876          283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM  323 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  323 (349)
                      +...|++++|...+++...... .+...+..+..++...|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            6666666666666666655532 144555555555555444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.83  E-value=3.7e-07  Score=62.28  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=36.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA  216 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (349)
                      ..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh
Confidence            333333444444444444444433332 12333333444444444444444444444433321 1233333344444444


Q ss_pred             CChHHHHHHHHHHH
Q 018876          217 GDLKQMEYLFRLMR  230 (349)
Q Consensus       217 ~~~~~a~~~~~~~~  230 (349)
                      |++++|...++++.
T Consensus        91 ~~~~~A~~~~~~~~  104 (125)
T 1na0_A           91 GDYDEAIEYYQKAL  104 (125)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            44444444444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.83  E-value=2.7e-07  Score=63.87  Aligned_cols=60  Identities=7%  Similarity=0.071  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML  125 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  125 (349)
                      .+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33334444444444444444444443331 1123333333333333344444444333333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.82  E-value=1.5e-07  Score=66.87  Aligned_cols=99  Identities=8%  Similarity=0.110  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018876          168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA  247 (349)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  247 (349)
                      ...+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            445556666666777777777777777666533 56666667777777777777777777766554 3345666667777


Q ss_pred             HHhcCChhhHHHHHHHHhhCC
Q 018876          248 YGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      +...|++++|...|+.+.+..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            777777777777777766654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.82  E-value=2.8e-07  Score=63.49  Aligned_cols=89  Identities=10%  Similarity=-0.000  Sum_probs=33.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876          139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD  218 (349)
Q Consensus       139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (349)
                      +...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.... +...+..+...+...|+
T Consensus        18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCC
Confidence            3333334444444444444433331 113333333333344444444444444433333211 23333333333334444


Q ss_pred             hHHHHHHHHHH
Q 018876          219 LKQMEYLFRLM  229 (349)
Q Consensus       219 ~~~a~~~~~~~  229 (349)
                      +++|...++..
T Consensus        96 ~~~A~~~~~~~  106 (131)
T 2vyi_A           96 HVEAVAYYKKA  106 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.82  E-value=4.6e-07  Score=70.60  Aligned_cols=129  Identities=9%  Similarity=-0.100  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHH
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAY  248 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~  248 (349)
                      ...+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence            3345556667777777777776665544  222244444556667777777777776443321 111  23556667777


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          249 GHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       249 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|+..|++.......|  ..........++.+.|+.++|...|+++...
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            77777777777777776433213  3335555666777777777777777777776

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.81  E-value=7.2e-08  Score=70.76  Aligned_cols=119  Identities=8%  Similarity=-0.002  Sum_probs=58.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCCh--hhH
Q 018876          181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKP--EKL  257 (349)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a  257 (349)
                      .|++++|...++...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3444445555544444332 134445555555555555555555555544432 2233444444444 4455555  556


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...++.+.+..+ .+...+..+...|...|++++|...|+++...
T Consensus       101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            655555555432 23445555666666666666666666666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.80  E-value=8.6e-08  Score=68.05  Aligned_cols=99  Identities=12%  Similarity=0.019  Sum_probs=62.3

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      +...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+....+ .++..+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence            34455555666666666667766666665543 34555666666666667777777777766665543 24556666666


Q ss_pred             HHHccCChHHHHHHHHHHHhc
Q 018876          282 AYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +|...|++++|...|+...+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            677777777777777666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.80  E-value=2.5e-07  Score=75.50  Aligned_cols=132  Identities=8%  Similarity=-0.129  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      +...+..+...+.+.|++++|...|++..+......              ...|..+..++.+.|++++|...+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455667777777788888888888877776653321              467777777777888888888888777765


Q ss_pred             CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH-HHHHHHHH
Q 018876          233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM-KGVLEVMQ  300 (349)
Q Consensus       233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~  300 (349)
                      . +.+...+..+..++...|++++|...|+.+.+..+. +...+..+..++.+.|++++| ...++.|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 445677777777788888888888888777766532 566777777777777777777 34555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.80  E-value=4.3e-08  Score=69.64  Aligned_cols=113  Identities=12%  Similarity=0.002  Sum_probs=93.6

Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 018876          225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC  304 (349)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  304 (349)
                      .++.+.... +.+...+..+...+...|++++|...|+.+....+ .+...|..+..+|...|++++|...|++......
T Consensus         9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            344444332 33456677788899999999999999999988764 3788899999999999999999999999998753


Q ss_pred             CCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          305 KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       305 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                       .+...+..+..+|...|++++|.+.++...++.+.
T Consensus        87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence             26788889999999999999999999998887653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.77  E-value=4.4e-07  Score=74.01  Aligned_cols=130  Identities=8%  Similarity=-0.128  Sum_probs=109.9

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--------------CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      +...+..+...+.+.|++++|...|++..+......              ...+..+..++...|++++|...++.+.+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467788889999999999999999999987642221              478999999999999999999999999987


Q ss_pred             CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH-HHHH
Q 018876          268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDL  333 (349)
Q Consensus       268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~  333 (349)
                      .+ .+...|..+..+|...|++++|...|++..+... .+...+..+..++...|+.++|.+ .++.
T Consensus       226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~  290 (336)
T 1p5q_A          226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYAN  290 (336)
T ss_dssp             CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64 3788899999999999999999999999998743 267788889999999999998833 4443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.77  E-value=2e-05  Score=63.17  Aligned_cols=136  Identities=10%  Similarity=0.001  Sum_probs=68.3

Q ss_pred             hcCChh-HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc----------hHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018876           75 KAFAFD-KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM----------FAEMELTLVKMLSEDCEPDVWTMNCTLRAF  143 (349)
Q Consensus        75 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  143 (349)
                      +.|.+. +|+.+++.+.... +-+..+|+.--..+...+.          +++++.+++.+.... +-+..+|+.-...+
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            344443 6777777777653 1233444443333322222          455555555555543 33444555544444


Q ss_pred             HccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876          144 GNSG--QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG  214 (349)
Q Consensus       144 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (349)
                      ...+  .+++++.+++.+.+.. +-|...|+.-...+...|. +++++..++.+.+.++. |...|+.....+.
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~  190 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP  190 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred             hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            4444  2556666666665554 2255555555555555555 35566666655555433 5555555444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.69  E-value=9.1e-07  Score=60.71  Aligned_cols=97  Identities=8%  Similarity=-0.096  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      ..+......+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+..+. +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            344445555555666666666665555443 334455555566666666666666666665554432 445555566666


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|...|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            6666666666666665554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.68  E-value=6.4e-07  Score=59.74  Aligned_cols=101  Identities=11%  Similarity=0.049  Sum_probs=78.0

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--chHHHH
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRP--NTVTYN  102 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~  102 (349)
                      .+...+..+...+...|++++|...|++..+..  +.+...+..+..++...|++++|...+++..+.. +.  +...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~   80 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA   80 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence            356667778888888888888888888877653  4567777888888888888888888888887763 23  466777


Q ss_pred             HHHHHHhcc-CchHHHHHHHHHHhccC
Q 018876          103 TLIDAYGRA-KMFAEMELTLVKMLSED  128 (349)
Q Consensus       103 ~l~~~~~~~-~~~~~a~~~~~~~~~~~  128 (349)
                      .+..++... |++++|.+.+++.....
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            788888888 88888888888887664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.3e-06  Score=59.95  Aligned_cols=94  Identities=7%  Similarity=-0.116  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH  250 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (349)
                      +..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            333444444444444444444444443321 34444444444444555555555554444432 2233444444445555


Q ss_pred             cCChhhHHHHHHHHhh
Q 018876          251 AGKPEKLGSVLRFIDN  266 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~  266 (349)
                      .|++++|...++...+
T Consensus        85 ~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           85 VKEYASALETLDAART  100 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHH
Confidence            5555555555544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=2.2e-06  Score=57.65  Aligned_cols=97  Identities=12%  Similarity=-0.077  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      ..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++...+..+ .+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            344444555555555555555555554432 22344555555555555555555555555554432 2344555555566


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|...++...+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            6666666666666655544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=3e-06  Score=56.95  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876          135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG  214 (349)
Q Consensus       135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (349)
                      .+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence            34444444445555555555555544432 223444444444444455555555555444443221 3344444444444


Q ss_pred             hcCChHHHHHHHHHHHh
Q 018876          215 RAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~  231 (349)
                      ..|++++|...++...+
T Consensus        84 ~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            44444444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.65  E-value=9.4e-07  Score=60.79  Aligned_cols=104  Identities=6%  Similarity=-0.135  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--c----hHHHHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--L----DTVFFNC  278 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~~  278 (349)
                      .+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++...+..+.  +    -..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34444555555555555555555555443 233455555555555556666655555555432110  0    0234555


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHH
Q 018876          279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY  311 (349)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  311 (349)
                      +..++...|++++|++.|++....  .||+.+.
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  119 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV  119 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence            666667777777777777766654  3454433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.64  E-value=8.1e-07  Score=62.48  Aligned_cols=99  Identities=11%  Similarity=-0.035  Sum_probs=82.8

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      +...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+....+ .++..+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence            45566677788889999999999999988765 45677888888999999999999999999888764 36677888899


Q ss_pred             HHHccCChHHHHHHHHHHHhc
Q 018876          282 AYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +|...|++++|...|+.....
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999988876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.63  E-value=1.2e-07  Score=71.02  Aligned_cols=88  Identities=10%  Similarity=-0.120  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY  318 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  318 (349)
                      ..+..+..++...|++++|...++.+.+... .+...+..+..+|...|++++|...|++...... -+...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence            4555566666666666666666666665532 2455666666666677777777777766665532 1445555555555


Q ss_pred             HccCchhhhH
Q 018876          319 STNGMKNHAK  328 (349)
Q Consensus       319 ~~~g~~~~a~  328 (349)
                      ...++.+++.
T Consensus       167 ~~~~~~~~~~  176 (198)
T 2fbn_A          167 NKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.62  E-value=1.6e-06  Score=60.36  Aligned_cols=100  Identities=9%  Similarity=-0.086  Sum_probs=81.2

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018876          201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV  280 (349)
Q Consensus       201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  280 (349)
                      .+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...++.+.+..+. +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            357778888888888899999999988887764 445678888888888889999999888888876543 677888888


Q ss_pred             HHHHccCChHHHHHHHHHHHhc
Q 018876          281 DAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+|...|++++|...|++....
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            8888889999998888888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.61  E-value=8.5e-07  Score=62.35  Aligned_cols=99  Identities=7%  Similarity=-0.101  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876          167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR  246 (349)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  246 (349)
                      +...+..+...+.+.|++++|...|+......+. +...|..+..++...|++++|...++...... +.+...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            4455666777788888999999999888877643 67788888888888899999999988887765 445667778888


Q ss_pred             HHHhcCChhhHHHHHHHHhhC
Q 018876          247 AYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      ++...|++++|...++...+.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            888889999998888887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.59  E-value=8.4e-07  Score=61.02  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCc----hHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPN----TVT  100 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~  100 (349)
                      ..++..+...+.+.|++++|++.|++..+..  +.+...|..+..++...|++++|+..+++.++...  .++    ..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            3456667777777777777777777776653  45566777777777777777777777777665411  111    124


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876          101 YNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus       101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      |..+..++...|++++|++.|++....
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455555566666666666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.59  E-value=2.3e-06  Score=61.80  Aligned_cols=97  Identities=14%  Similarity=-0.000  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.... +...|..+..+|
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            334444444445555555555555444432 223444444555555555555555555555444321 344455555555


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|...|++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            5555555555555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.59  E-value=1.1e-06  Score=60.53  Aligned_cols=110  Identities=5%  Similarity=-0.024  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--ch----HHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LD----TVFFN  277 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~  277 (349)
                      ..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++.+......  ++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            344455555556666666666666555443 334455555666666666666666666655443210  11    45666


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                      .+...+...|++++|...|+...+.  .|+...+..+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~  120 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            6777777777777777777777665  345444444433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.58  E-value=2.1e-06  Score=64.17  Aligned_cols=129  Identities=11%  Similarity=-0.067  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018876          171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK  235 (349)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  235 (349)
                      +..+...+...|++++|...|++........               ....+..+..++...|++++|...++...+.. +
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p  119 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K  119 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence            3444444555555555555555554432110               02566667777777777777777777776653 3


Q ss_pred             CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH-HHHHHHHh
Q 018876          236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK-GVLEVMQQ  301 (349)
Q Consensus       236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~  301 (349)
                      .+...+..+..++...|++++|...++...+..+ -+...+..+..++...++..++. ..+..+..
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566677777777777888888877777766543 25566666666666666666555 44444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=3.5e-06  Score=59.34  Aligned_cols=98  Identities=11%  Similarity=0.040  Sum_probs=58.8

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY  101 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (349)
                      +...+..+...+...|++++|.+.|++..+.   .|+    ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            4455666666666667777777777666654   344    4555566666666666666666666665542 2244555


Q ss_pred             HHHHHHHhccCchHHHHHHHHHHhcc
Q 018876          102 NTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus       102 ~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      ..+..++...|++++|...+++....
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            55566666666666666666665544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.58  E-value=3.7e-06  Score=58.43  Aligned_cols=101  Identities=10%  Similarity=-0.102  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018876          165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL  244 (349)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (349)
                      +.+...+..+...+...|++++|...|.......+. +...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            346777888888888888888888888888776533 67788888888888888888888888887754 4456778888


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhC
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      ..++...|++++|...++.+.+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH
Confidence            88888888888888888877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.57  E-value=1.3e-06  Score=63.18  Aligned_cols=103  Identities=13%  Similarity=-0.053  Sum_probs=90.4

Q ss_pred             CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876          236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV  315 (349)
Q Consensus       236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  315 (349)
                      .+...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...+++....... +...|..+.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            4566788888999999999999999999988764 37888999999999999999999999999988532 688899999


Q ss_pred             HHHHccCchhhhHHHHHHHHHhHHh
Q 018876          316 RAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .+|...|++++|.+.++...++.+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999988887653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.7e-05  Score=66.98  Aligned_cols=197  Identities=8%  Similarity=-0.076  Sum_probs=132.3

Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCcc----------------hhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCC
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEPD----------------VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPS  167 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~  167 (349)
                      ...+.+.|++++|.+.|.++.+......                ...+..+...|...|++++|.+.+..+.+.- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4556788999999999999887642211                1236678888899999999999888866531 1112


Q ss_pred             HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhC--C---
Q 018876          168 IN----TFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--R---  233 (349)
Q Consensus       168 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~---  233 (349)
                      ..    +.+.+-..+...|+.+.|..++......    +..+ -..++..+...+...|++++|..+++.+...  +   
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            21    2222333344567888888888776432    2121 2456777888888899999999888877542  1   


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      .+....++..+++.|...|++++|...++.....    ..++.  ...+..+...+...|++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1122456778888888999999999888876532    21111  34566777778888899998888777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.56  E-value=1.4e-06  Score=58.11  Aligned_cols=25  Identities=12%  Similarity=-0.039  Sum_probs=9.7

Q ss_pred             HHHHHHHHHcc-CChHHHHHHHHHHH
Q 018876          276 FNCLVDAYGRL-KCFAEMKGVLEVMQ  300 (349)
Q Consensus       276 ~~~li~~~~~~-g~~~~a~~~~~~~~  300 (349)
                      +..+...+... |++++|.+.++...
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            33333333333 34444443333333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.55  E-value=5.5e-06  Score=70.06  Aligned_cols=197  Identities=9%  Similarity=-0.080  Sum_probs=133.7

Q ss_pred             HHHHHcCCChhHHHHHHHHhhcCCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCc
Q 018876           34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPD---------------VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPN   97 (349)
Q Consensus        34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~   97 (349)
                      ...+.+.|++++|++.|..+.+......+               ..++..+...|...|++++|.+.+..+... +..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            44567788888888888887765321111               124677888899999999999988876553 11112


Q ss_pred             h----HHHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC--C--
Q 018876           98 T----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG--I--  164 (349)
Q Consensus        98 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--  164 (349)
                      .    .+.+.+-..+...|+++.+..+++.....    + ...-..++..+...+...|++++|..++.++...-  .  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    22333444555678888888888776542    2 12234567788889999999999999998876431  1  


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-c--hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876          165 -QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH---YSW-T--IVTYNIVIDAFGRAGDLKQMEYLFRLMR  230 (349)
Q Consensus       165 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  230 (349)
                       +....++..++..|...|++++|..++++.....   ..| .  ...+..+...+...+++++|...+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             1135577888899999999999999998775431   111 1  2456666677778899999988877664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=9.5e-06  Score=57.08  Aligned_cols=60  Identities=8%  Similarity=-0.006  Sum_probs=24.0

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK  196 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (349)
                      +..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus        68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           68 HRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3333333444444444444444433331 11333333444444444444444444444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.51  E-value=8.6e-07  Score=60.99  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=61.1

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCc----hHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPN----TVT  100 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~  100 (349)
                      ...+..+...+...|++++|...|++.....  +.+...+..+...+...|++++|...+++......  .++    ..+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3456666666777777777777777766542  34566666666777777777777777776655421  111    445


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876          101 YNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus       101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                      +..+..++...|++++|...+++..+.
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            555556666666666666666666554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.51  E-value=1.5e-06  Score=59.11  Aligned_cols=92  Identities=11%  Similarity=-0.081  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      .+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..+|...|
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            34444455555555555555554432 234444555555555555555555555555544322 3444445555555555


Q ss_pred             ChHHHHHHHHHHHh
Q 018876          288 CFAEMKGVLEVMQQ  301 (349)
Q Consensus       288 ~~~~a~~~~~~~~~  301 (349)
                      ++++|...+++..+
T Consensus       100 ~~~~A~~~~~~al~  113 (121)
T 1hxi_A          100 NANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.50  E-value=0.00024  Score=57.02  Aligned_cols=183  Identities=7%  Similarity=-0.027  Sum_probs=127.7

Q ss_pred             hhhHHHHHHH---HHcCCChh-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhC
Q 018876           27 TQSFTALLSA---YGRSGLFD-KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQ   92 (349)
Q Consensus        27 ~~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~   92 (349)
                      +..|..+...   ..+.|.+. +|+++++.+....  +-+..+|+.--..+...+.          +++++.+++.+...
T Consensus        26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~  103 (331)
T 3dss_A           26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  103 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence            3445444433   34566655 8999999999873  4455667765554444333          67888999998887


Q ss_pred             CCCCchHHHHHHHHHHhccC--chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhcCCCCCHH
Q 018876           93 GIRPNTVTYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSAGIQPSIN  169 (349)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~  169 (349)
                      . +-+..+|+.-.-++.+.+  .+++++..++++.+.. +.+...|+.-.-++...|. ++++++.++.+.+..+ -|..
T Consensus       104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~S  180 (331)
T 3dss_A          104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYS  180 (331)
T ss_dssp             C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHH
T ss_pred             C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHH
Confidence            4 447778887776676777  4899999999999876 5577778777777777887 5899999999998864 4777


Q ss_pred             HHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876          170 TFNILLDSYGKA--------------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR  215 (349)
Q Consensus       170 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (349)
                      .|+.....+.+.              +.++++++.+.......+. |...|+-+-..+.+
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA  239 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            887776666555              3466777777777766543 66666654444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.49  E-value=7.9e-07  Score=76.10  Aligned_cols=117  Identities=12%  Similarity=0.030  Sum_probs=92.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+..  +.+..++..+..++...|++++
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence            567899999999999998874 4568889999999999999999999999998874  5577888999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHH--HhccCchHHHHHHHH
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLV  122 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  122 (349)
                      |.+.+++..+.. +-+...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999988763 2244455555555  778899999999888

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.48  E-value=2.2e-06  Score=58.36  Aligned_cols=95  Identities=6%  Similarity=-0.175  Sum_probs=49.3

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876          242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN  321 (349)
Q Consensus       242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  321 (349)
                      ..+...+...|++++|...++.+.+..+ .+...|..+..++...|++++|...|++..+.... +...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            3344445555555555555555555432 24455555555555555555555555555554321 344555555555555


Q ss_pred             CchhhhHHHHHHHHHhH
Q 018876          322 GMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       322 g~~~~a~~~~~~~~~~~  338 (349)
                      |++++|...++...+..
T Consensus        99 g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            55555555555554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.48  E-value=4.5e-07  Score=61.37  Aligned_cols=87  Identities=11%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             CCCChHHHHHHHHHHHhcC--CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      ..|++++|+..|++..+.+  -+.+..++..+..++...|++++|+..|++..+..  +.+...+..+..++...|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence            4688888999998888763  23456678888888889999999999998888763  4567788888888888999999


Q ss_pred             HHHHHHHHHhC
Q 018876           82 VQALLSDMSTQ   92 (349)
Q Consensus        82 a~~~~~~~~~~   92 (349)
                      |...+++....
T Consensus        80 A~~~~~~al~~   90 (117)
T 3k9i_A           80 GVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99888887765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.44  E-value=5.5e-07  Score=77.07  Aligned_cols=119  Identities=13%  Similarity=-0.090  Sum_probs=73.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE  255 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  255 (349)
                      ..+.+.|++++|...+++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            3455667777777777777665432 56667777777777777777777777776653 344566666777777777777


Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHH--HHccCChHHHHHHHH
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDA--YGRLKCFAEMKGVLE  297 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  297 (349)
                      +|...++++.+..+. +...+..+..+  +.+.|++++|.+.++
T Consensus        92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            777777776654322 23344444444  666677777777666

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.44  E-value=1.7e-06  Score=61.99  Aligned_cols=64  Identities=13%  Similarity=0.091  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      ++..+...+...|++++|...+++....    +..+ ....+..+...+...|++++|.+.++...++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            4445555555566666665555554432    1100 12344555556666666666666666555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.43  E-value=4e-06  Score=59.94  Aligned_cols=133  Identities=14%  Similarity=-0.005  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-cHH
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WT----IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKP-SCV  239 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  239 (349)
                      ++..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|...+++..+.    +.++ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444455555555555555555554332110 00    134555556666666666666666655432    1011 134


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhC----CC-CchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS----DI-MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+..+...+...|++++|...++...+.    +. ......+..+...+...|++++|.+.+++..+.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5556666777777777777777665432    11 112445677778888888888888888776653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.38  E-value=1e-05  Score=68.87  Aligned_cols=132  Identities=7%  Similarity=-0.103  Sum_probs=94.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      ....+..+...+.+.|++++|...|++..+......              ...|..+..++.+.|++++|+..+++..+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            344566777788888888888888888776543211              467778888888888888888888888776


Q ss_pred             CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH-HHHHHH
Q 018876          233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG-VLEVMQ  300 (349)
Q Consensus       233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~  300 (349)
                      . +.+...+..+..++...|++++|...|+.+.+..+ -+...+..+..++.+.++.+++.+ .+..|.
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 44667788888888888888888888888877653 255677777778888887776653 444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.36  E-value=7.9e-06  Score=69.61  Aligned_cols=126  Identities=11%  Similarity=-0.044  Sum_probs=103.8

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--------------CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      ....+..+...+.+.|++++|...|++..+......              ...|..+..++.+.|++++|...++.+.+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            456778888899999999999999999887532211              578889999999999999999999999887


Q ss_pred             CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH
Q 018876          268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      .. .+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.|+.+++.+
T Consensus       347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            64 3788899999999999999999999999998742 256778888888888888887764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.36  E-value=9.1e-06  Score=67.06  Aligned_cols=91  Identities=9%  Similarity=-0.033  Sum_probs=65.1

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                      +...|..+..++.+.|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+.... +...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            346677777888888888888888888877653 35677777888888888888888888888776322 4556666666


Q ss_pred             HHHccCchhhhHH
Q 018876          317 AYSTNGMKNHAKE  329 (349)
Q Consensus       317 ~~~~~g~~~~a~~  329 (349)
                      ++...++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.35  E-value=1.9e-05  Score=54.08  Aligned_cols=93  Identities=12%  Similarity=-0.093  Sum_probs=52.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHH
Q 018876          209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAY  283 (349)
Q Consensus       209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~  283 (349)
                      +...+...|++++|...++.+.+.. +.+.   ..+..+..++...|++++|...++.+.+..+..  ....+..+..++
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            3444555666666666666655432 1111   345555566666666666666666665543221  044555666666


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|++++|...|+.+...
T Consensus        87 ~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            6677777777777666655

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.35  E-value=1.7e-06  Score=58.55  Aligned_cols=86  Identities=12%  Similarity=-0.070  Sum_probs=51.5

Q ss_pred             cCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018876          216 AGDLKQMEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  293 (349)
                      .|++++|+..|++..+.+  -+.+...+..+..++...|++++|...++.+.+..+. +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            456666666666666542  1223455666666666777777777777766665432 4556666666777777777777


Q ss_pred             HHHHHHHhc
Q 018876          294 GVLEVMQQR  302 (349)
Q Consensus       294 ~~~~~~~~~  302 (349)
                      ..+++....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.34  E-value=0.00012  Score=63.96  Aligned_cols=174  Identities=6%  Similarity=-0.075  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 018876          148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG  217 (349)
Q Consensus       148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  217 (349)
                      ..++|++.++++.... +-+..+|+.--..+...|+          ++++...++.+.+..++ +..+|+.-.-.+.+.+
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            3456788888887764 2355666665555656665          78888888888887655 7788887777777888


Q ss_pred             --ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--------
Q 018876          218 --DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--------  286 (349)
Q Consensus       218 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------  286 (349)
                        +++++++.++++.+.. +-+..+|+.-...+...| .++++.+.++.+.+..+. +...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              6688999998888776 456777887777777788 788888888888887654 777887777776653        


Q ss_pred             ------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhh
Q 018876          287 ------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH  326 (349)
Q Consensus       287 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  326 (349)
                            +.++++.+.++........ |...|..+-..+.+.+..++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                  5678899999988887433 67788887777777666443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.33  E-value=1.3e-05  Score=57.59  Aligned_cols=64  Identities=8%  Similarity=-0.024  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...|..+..++...|++++|...++.+.+..+ .+...|..+..+|...|++++|...|+.....
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            35666677777777777777777777766553 35667777777777777777777777777765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.33  E-value=1.4e-05  Score=66.02  Aligned_cols=123  Identities=7%  Similarity=-0.027  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKY---------------HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI  234 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  234 (349)
                      .+..+...+.+.|++++|...|++..+.               ..+.+...|..+..++.+.|++++|...+++..+.. 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            4566677788888888888888877651               112246788888899999999999999999998764 


Q ss_pred             CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876          235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG  294 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  294 (349)
                      +.+...+..+..++...|++++|...++.+.+..+. +...+..+...+...++.+++.+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788888999999999999999999998877543 66777777777777777776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.31  E-value=5.8e-05  Score=51.59  Aligned_cols=89  Identities=11%  Similarity=0.025  Sum_probs=37.4

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHH
Q 018876          141 RAFGNSGQIDTMEKCYEKFQSAGIQPSI---NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFG  214 (349)
Q Consensus       141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~  214 (349)
                      ..+...|++++|...|+.+.+.... +.   ..+..+..++...|++++|...++.+.+..+. +   ...+..+..++.
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~   87 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHH
Confidence            3344444444444444444443211 11   23334444444444444444444444443211 1   233344444444


Q ss_pred             hcCChHHHHHHHHHHHh
Q 018876          215 RAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~  231 (349)
                      ..|++++|...++.+..
T Consensus        88 ~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            44444444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.28  E-value=1.9e-05  Score=55.62  Aligned_cols=65  Identities=17%  Similarity=0.070  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhc-----CCCC-CHHHH----HHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKP-DKVTY----RTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      .|+.+..++.+.|++++|+..+++.++.     .+.| +...|    .....++...|++++|+..++...++.+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            5555555566666666666666555543     1123 33445    5555666666666666666666655554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.28  E-value=1.6e-05  Score=57.09  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  268 (349)
                      ...|..+..++.+.|++++|...++..++.. +.+...|..+..++...|++++|...++...+..
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            3456666666666677777776666666543 3445666666666777777777777776666553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.22  E-value=7.1e-06  Score=66.91  Aligned_cols=149  Identities=11%  Similarity=0.005  Sum_probs=68.9

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID  106 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  106 (349)
                      ...+..+...+.+.|++++|...|++....   .|+...+       ...++.+++...+          ....|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHH
Confidence            345667777788888888888888887764   3443311       1112222222111          1125666666


Q ss_pred             HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFE  185 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  185 (349)
                      +|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777766553 3355666666777777777777777777665542 1133344444333 22344556


Q ss_pred             HHHHHHHHHHhc
Q 018876          186 KMSAVMEYMQKY  197 (349)
Q Consensus       186 ~a~~~~~~~~~~  197 (349)
                      .+...|..+...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            666666666544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.21  E-value=0.00017  Score=63.00  Aligned_cols=175  Identities=7%  Similarity=-0.045  Sum_probs=133.8

Q ss_pred             CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 018876           41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR  110 (349)
Q Consensus        41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  110 (349)
                      ..-++|++.++.+....  +-+..+|+.--.++...++          ++++.+.++.+.+.. +-+..+|+.-.-++.+
T Consensus        43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            34567899999998763  4566778877777777766          889999999998875 3477788887778888


Q ss_pred             cC--chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------
Q 018876          111 AK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA------  181 (349)
Q Consensus       111 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  181 (349)
                      .+  +++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++.+..+ -+...|+.....+.+.      
T Consensus       120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccc
Confidence            88  6799999999999876 556777887777777888 88899999999888753 3777887777766653      


Q ss_pred             --------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          182 --------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       182 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                              +.++++.+.+++.....+. +...|..+-..+.+.++.++
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                    4568888888888776644 77888877777777666433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.20  E-value=8.3e-06  Score=66.49  Aligned_cols=150  Identities=12%  Similarity=0.033  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018876          168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA  247 (349)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  247 (349)
                      ...+..+...+.+.|++++|...|++.....  |+...       +...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            3445556666667777777777777766543  22221       112222222221110          1366777777


Q ss_pred             HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHccCchh
Q 018876          248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRA-YSTNGMKN  325 (349)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~  325 (349)
                      +.+.|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+.  .| +...+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887776653 35677777888888888888888888877655  23 33344444433 23345566


Q ss_pred             hhHHHHHHHHHhHH
Q 018876          326 HAKEFQDLVEKMDE  339 (349)
Q Consensus       326 ~a~~~~~~~~~~~~  339 (349)
                      .+...+..+....+
T Consensus       317 ~a~~~~~~~l~~~p  330 (338)
T 2if4_A          317 KQKEMYKGIFKGKD  330 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHhhCCCC
Confidence            66666666655544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.18  E-value=0.00013  Score=51.40  Aligned_cols=62  Identities=10%  Similarity=-0.111  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhC-------CCCchHHHH----HHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS-------DIMLDTVFF----NCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .|..+..++...|++++|+..++...+.       .+ -+...|    .....++...|++++|+..|++..+.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            6677777777777777777777776664       43 255667    77888888888888888888887654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.13  E-value=0.00012  Score=50.98  Aligned_cols=84  Identities=13%  Similarity=-0.078  Sum_probs=34.7

Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR---  215 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  215 (349)
                      |...+..++|.++|++..+.|   +...+..+...|..    .++.++|...|++..+.+   ++..+..+...|..   
T Consensus        35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred             HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence            333334444444444444432   33333334444433    344444444444444332   23333344444433   


Q ss_pred             -cCChHHHHHHHHHHHhC
Q 018876          216 -AGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       216 -~~~~~~a~~~~~~~~~~  232 (349)
                       .++.++|...|++..+.
T Consensus       109 ~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHC
Confidence             34444444444444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.11  E-value=0.00011  Score=51.14  Aligned_cols=111  Identities=14%  Similarity=-0.058  Sum_probs=69.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhH
Q 018876            6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDK   81 (349)
Q Consensus         6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~   81 (349)
                      +++++|.+.|++..+.|   ++...  |...|...+.+++|.+.|++..+.    -+...+..+...|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            45667777777777665   22223  555566666677777777776654    355666666666666    667777


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccC
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSED  128 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  128 (349)
                      |..+|++..+.|   +...+..|...|..    .++.++|...|++..+.|
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            777777776654   44555556666655    566666666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.09  E-value=4.4e-05  Score=65.12  Aligned_cols=124  Identities=9%  Similarity=0.000  Sum_probs=70.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhcC---CCC----chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHH
Q 018876          178 YGKAGHFEKMSAVMEYMQKYH---YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCS  243 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~  243 (349)
                      +...|++++|..++++..+..   +.+    ...+++.|...|...|++++|..++++..+.     |  .+-...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            445677777777776654321   111    2356666777777777777777766665431     1  1122345666


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhh-----CCCC-c-hHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDN-----SDIM-L-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      |...|...|++++|..++++..+     .|.. | ...+.+.+..++...+.+++|..++..+++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777777666665432     1211 1 223344555556666666777666666654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.07  E-value=4.5e-05  Score=65.08  Aligned_cols=126  Identities=9%  Similarity=-0.134  Sum_probs=95.3

Q ss_pred             HHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHH
Q 018876          212 AFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFN  277 (349)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~  277 (349)
                      .+...|++++|..++++..+.     |  .+....+++.+..+|...|++++|..++++..+.     |. .| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            356789999999999887643     1  1123567899999999999999999999876532     21 12 345789


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          278 CLVDAYGRLKCFAEMKGVLEVMQQR-----GCK-PD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      .|...|...|++++|..++++..+.     |.. |+ ..+...+-.++...+.+++|+..+..+++-
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987643     322 22 334556667788899999999999888663

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.00  E-value=8.8e-05  Score=49.61  Aligned_cols=81  Identities=12%  Similarity=0.005  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876          220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM  299 (349)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  299 (349)
                      +.|...+++..+.. +.+...+..+...+...|++++|...++...+..+ .+...|..+..+|...|++++|...|++.
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35777888887654 45678888899999999999999999999887764 35778888999999999999999999988


Q ss_pred             Hhc
Q 018876          300 QQR  302 (349)
Q Consensus       300 ~~~  302 (349)
                      ...
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.99  E-value=6.4e-05  Score=49.76  Aligned_cols=88  Identities=7%  Similarity=-0.119  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-------HHH
Q 018876          238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-------KVT  310 (349)
Q Consensus       238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~~  310 (349)
                      ...+..+...+...|++++|...++...+..+ .+...+..+..++...|++++|...+++.....  |+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence            34445555555556666666666655555432 244555556666666666666666666665542  22       333


Q ss_pred             HHHHHHHHHccCchhhhH
Q 018876          311 YRTMVRAYSTNGMKNHAK  328 (349)
Q Consensus       311 ~~~l~~~~~~~g~~~~a~  328 (349)
                      +..+..++...|+.+.|.
T Consensus        81 ~~~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHHHhHhhhH
Confidence            444444444444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.99  E-value=5.9e-05  Score=50.48  Aligned_cols=80  Identities=16%  Similarity=0.072  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018876           10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM   89 (349)
Q Consensus        10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   89 (349)
                      +|++.|++..+.. +.+...+..+...+...|++++|+..|++.....  +.+...|..+..++...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566666666543 3456666666777777777777777777666543  344566666666777777777777776666


Q ss_pred             HhC
Q 018876           90 STQ   92 (349)
Q Consensus        90 ~~~   92 (349)
                      ...
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.92  E-value=8.6e-05  Score=49.11  Aligned_cols=64  Identities=6%  Similarity=-0.086  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3444445555555555555555555554432 233445555555555555555555555555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.91  E-value=2.5e-05  Score=54.89  Aligned_cols=98  Identities=9%  Similarity=0.075  Sum_probs=65.8

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCCh----------hHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF----------DKAFSLLEHMKNTPDCQPDVNTYSILIKSC   73 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   73 (349)
                      +.+.+++|++.++...+.. +.+...|..+..++...+++          ++|+..|++..+..  +.+..+|..+..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence            3456778888888877764 55777777777777777664          47777777777663  44566777777777


Q ss_pred             HhcC-----------ChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018876           74 LKAF-----------AFDKVQALLSDMSTQGIRPNTVTYNTLID  106 (349)
Q Consensus        74 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  106 (349)
                      ...|           ++++|.+.|++..+.  .|+...|...+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            7654           677777777777665  455554444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.86  E-value=0.00024  Score=44.91  Aligned_cols=78  Identities=13%  Similarity=0.007  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY  318 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  318 (349)
                      ..+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++...... .+...+..+..++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            4445555555556666666666655554432 2445555566666666666666666666655421 1344444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.84  E-value=7.3e-05  Score=52.54  Aligned_cols=95  Identities=11%  Similarity=0.028  Sum_probs=53.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc-
Q 018876          218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK----------PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-  286 (349)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-  286 (349)
                      .+++|...++...+.. +.+...|..+..++...++          +++|+..|++..+.++. +...|..+..+|... 
T Consensus        17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence            3444444444444333 2334444444444444433          34666777666665543 455666666666655 


Q ss_pred             ----------CChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          287 ----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       287 ----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                                |++++|.+.|++..+.  .|+...|...+.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence                      4788888888888876  566555544444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.83  E-value=0.00042  Score=43.72  Aligned_cols=16  Identities=19%  Similarity=0.389  Sum_probs=5.9

Q ss_pred             HHhcCCHHHHHHHHHH
Q 018876          178 YGKAGHFEKMSAVMEY  193 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~  193 (349)
                      +...|++++|...+++
T Consensus        19 ~~~~~~~~~A~~~~~~   34 (91)
T 1na3_A           19 YYKQGDYDEAIEYYQK   34 (91)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHH
Confidence            3333333333333333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.70  E-value=0.00032  Score=45.48  Aligned_cols=67  Identities=10%  Similarity=-0.018  Sum_probs=54.5

Q ss_pred             CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +-+...+..+..++...|++++|...++.+.+..+. +...|..+..+|...|++++|...|++..+.
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345677888888899999999999999988877643 5678888899999999999999998887754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.64  E-value=0.00019  Score=60.16  Aligned_cols=99  Identities=8%  Similarity=0.005  Sum_probs=68.8

Q ss_pred             hcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----CC-CCC-HHHHHHHH
Q 018876          250 HAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GC-KPD-KVTYRTMV  315 (349)
Q Consensus       250 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~  315 (349)
                      ..|++++|..++++..+.     |. .| ...+++.|..+|...|++++|..++++....     |. .|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            346777787777765431     11 12 2456778888888888888888888877643     21 233 35677888


Q ss_pred             HHHHccCchhhhHHHHHHHHHhHHhhhccCCCC
Q 018876          316 RAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD  348 (349)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  348 (349)
                      ..|...|++++|..++++..++.....++++|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            888888888888888888888887777777663

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.64  E-value=0.00031  Score=45.60  Aligned_cols=64  Identities=19%  Similarity=0.059  Sum_probs=37.8

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST   91 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   91 (349)
                      +...+..+..++...|++++|+..|++..+..  +.+...|..+..++...|++++|...+++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45556666666666666666666666665542  33445566666666666666666666665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.63  E-value=0.00047  Score=57.89  Aligned_cols=102  Identities=15%  Similarity=0.041  Sum_probs=56.0

Q ss_pred             HHHHhcCChhhHHHHHHHHhhCC---CC----chHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----C-CCCC-HHHH
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNSD---IM----LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----G-CKPD-KVTY  311 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~  311 (349)
                      ..+...|++++|..+++...+..   +.    ....+++.+..+|...|++++|..++++....     | -.|+ ..++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            33445566666666666554321   11    12345566666666666666666666655432     1 1122 2445


Q ss_pred             HHHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCC
Q 018876          312 RTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRP  347 (349)
Q Consensus       312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  347 (349)
                      +.|...|...|++++|..++++..++.....++++|
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp  410 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS  410 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            666666666666666666666666666655555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.51  E-value=0.0041  Score=50.34  Aligned_cols=143  Identities=8%  Similarity=-0.057  Sum_probs=86.4

Q ss_pred             CCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---cC--ChHHHH---HHHHHHHh
Q 018876          165 QPSINTFNILLDSYGK--AG---HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR---AG--DLKQME---YLFRLMRS  231 (349)
Q Consensus       165 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a~---~~~~~~~~  231 (349)
                      +.+...|..++++...  .+   +..+|..+|++..+..+. ....|..+..++..   .+  ......   ..++....
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            4566667766655432  22   346778888887776532 33444433333321   11  111111   11111111


Q ss_pred             -CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHH
Q 018876          232 -ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT  310 (349)
Q Consensus       232 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  310 (349)
                       ...+.+..++..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++....  .|...+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t  345 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT  345 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence             1124566777777666667788888888888888775  56777777788888888888888888888876  456665


Q ss_pred             HH
Q 018876          311 YR  312 (349)
Q Consensus       311 ~~  312 (349)
                      |.
T Consensus       346 ~~  347 (372)
T 3ly7_A          346 LY  347 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.34  E-value=0.0054  Score=49.63  Aligned_cols=66  Identities=6%  Similarity=-0.089  Sum_probs=39.5

Q ss_pred             CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      +.+..+|..+...+...|++++|...+++....+  |+...|..+...+...|++++|.+.+++....
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3355555555555555566666666666666553  45555555556666666666666666666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.30  E-value=0.0012  Score=42.40  Aligned_cols=58  Identities=10%  Similarity=0.093  Sum_probs=38.2

Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCchHH-HHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      ...+...|++++|...++.+.+..+. +.. .+..+..+|...|++++|...|++..+..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            44556667777777777776665432 445 66667777777777777777777776653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.20  E-value=0.0022  Score=53.79  Aligned_cols=88  Identities=10%  Similarity=-0.092  Sum_probs=67.2

Q ss_pred             hcCChHHHHHHHHHHHhC---CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHHHHH
Q 018876          215 RAGDLKQMEYLFRLMRSE---RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFNCLV  280 (349)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li  280 (349)
                      ..|++++|..++++..+.   -+.    ....+++.+..+|...|++++|..++++..+.     |. .| ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999887642   111    22467889999999999999999999876531     21 23 345789999


Q ss_pred             HHHHccCChHHHHHHHHHHHhc
Q 018876          281 DAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ..|...|++++|..++++..+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999988654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.14  E-value=0.0049  Score=51.75  Aligned_cols=93  Identities=11%  Similarity=-0.100  Sum_probs=71.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCC---CCC----cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHH
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSER---IKP----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVF  275 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~  275 (349)
                      +..+.+.|++++|..++++..+..   ..|    ...+++.+..+|...|++++|..+++++...     |. .| ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            445667899999999999887531   122    2467888999999999999999999876531     21 22 3457


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ++.|...|...|++++|..++++..+.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            889999999999999999999887654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.11  E-value=0.0049  Score=39.15  Aligned_cols=68  Identities=7%  Similarity=-0.010  Sum_probs=47.3

Q ss_pred             CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      +.+...+..+..++...++   .++|..++++..+..+. ++.....+...+.+.|++++|...|+.+.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3455666666666654444   57777777777776543 66677777777788888888888888877763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.02  E-value=0.032  Score=51.20  Aligned_cols=46  Identities=13%  Similarity=-0.018  Sum_probs=27.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876          178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  229 (349)
                      ....|+++.|.++.+.+      .+...|..+...+.+.++++.|.+.|.++
T Consensus       662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34556666666654322      24566666666666666666666666655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.01  E-value=0.012  Score=40.95  Aligned_cols=82  Identities=15%  Similarity=0.010  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHccCChHHHH
Q 018876          219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  293 (349)
                      ...+.+-|.+..+.+ +++..+...+..++++++   +.+++..+++.+.+.. .|  +...+-.+.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            344555555555555 367777777777888877   4557888887777654 23  3445555677778888888888


Q ss_pred             HHHHHHHhc
Q 018876          294 GVLEVMQQR  302 (349)
Q Consensus       294 ~~~~~~~~~  302 (349)
                      +.++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888888876

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.94  E-value=0.062  Score=41.82  Aligned_cols=94  Identities=15%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-CChHH
Q 018876          149 IDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKA-----GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDLKQ  221 (349)
Q Consensus       149 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~  221 (349)
                      ...|...+++..+.... .+...|..+...|.+.     |+.++|...|++..+.++.-+..++......++.. |+.+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45677777777776321 1356788888888884     88999999998888876433477777788888774 88888


Q ss_pred             HHHHHHHHHhCCCC--CcHHHHH
Q 018876          222 MEYLFRLMRSERIK--PSCVTLC  242 (349)
Q Consensus       222 a~~~~~~~~~~~~~--~~~~~~~  242 (349)
                      +.+.+++.......  |+....+
T Consensus       259 a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          259 FDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHcCCCCCCCChhHHH
Confidence            89998888876555  5544333

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.94  E-value=0.042  Score=36.98  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             hhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           28 QSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        28 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      .....|+.+  +.-.|..++..++..+....    .+..-||-++.-....-+-+-..++++..-+.   .|..      
T Consensus         6 el~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis------   72 (172)
T 1wy6_A            6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD------   72 (172)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG------
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH------
Confidence            344556655  55678888889998888764    45666777776666777777777776665432   1221      


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE  185 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (349)
                          .+|+......-+-.+     ..+.......+......|.-++..+++..+... .+|++...-.+..+|.+.|+..
T Consensus        73 ----~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r  142 (172)
T 1wy6_A           73 ----KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDER  142 (172)
T ss_dssp             ----GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred             ----hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchh
Confidence                223333333333222     123334555666677777777777777775443 3567777777777888888888


Q ss_pred             HHHHHHHHHHhcCCC
Q 018876          186 KMSAVMEYMQKYHYS  200 (349)
Q Consensus       186 ~a~~~~~~~~~~~~~  200 (349)
                      +|.+++.+.-+.|++
T Consensus       143 ~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          143 DATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhhhH
Confidence            888888777777653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.89  E-value=0.0091  Score=37.89  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=37.9

Q ss_pred             CchhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           25 ANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      .++..+..+..++...++   .++|..++++..+..  +-+..+...+...+.+.|++++|...|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455555555555543333   456666666666543  345555555666666666666666666666655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.88  E-value=0.031  Score=51.26  Aligned_cols=102  Identities=8%  Similarity=-0.001  Sum_probs=71.7

Q ss_pred             HHHHccCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876          141 RAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL  219 (349)
Q Consensus       141 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  219 (349)
                      ......+++++|.+ ++..     + ++......++..+.+.|..+.|.++.+.-       . .    -.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-~----~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-Q----KFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-H----HHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-------c-h----heehhhhcCCH
Confidence            34456788888866 4422     1 11223377778888899999988766321       1 1    12334578999


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876          220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN  266 (349)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  266 (349)
                      +.|.++.+.+      .+...|..+.+.+.+.++++.|.+.|..+..
T Consensus       669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            9999986543      4668999999999999999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.83  E-value=0.021  Score=36.33  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=23.2

Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGIQPSIN-TFNILLDSYGKAGHFEKMSAVMEYMQKY  197 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (349)
                      +...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            334444444444444444432 11333 4444444444444444444444444433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.73  E-value=0.014  Score=40.56  Aligned_cols=85  Identities=8%  Similarity=-0.088  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCchhhhH
Q 018876          254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAK  328 (349)
Q Consensus       254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~  328 (349)
                      ...+.+-|......+. ++..+...+..++++.+   +.+++..+|++..+.+ .|  +...+..+.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3455666666666554 67788888899999988   6779999999999874 24  3566677777899999999999


Q ss_pred             HHHHHHHHhHHh
Q 018876          329 EFQDLVEKMDET  340 (349)
Q Consensus       329 ~~~~~~~~~~~~  340 (349)
                      ++++.+.+.++.
T Consensus        92 ~y~~~lL~ieP~  103 (152)
T 1pc2_A           92 KYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCC
Confidence            999999988774

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.087  Score=37.62  Aligned_cols=103  Identities=11%  Similarity=0.068  Sum_probs=65.6

Q ss_pred             HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876           34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM  113 (349)
Q Consensus        34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (349)
                      .....+.|+++.|.++.+.+       .+...|..|.......|+++-|+..|.+...         +..+.-.|.-.|+
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred             HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence            34455677788887776655       2566788888888888888888777766542         3344445555666


Q ss_pred             hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018876          114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEK  158 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  158 (349)
                      .+...++-+.....|      -++.....+...|+++++.++|.+
T Consensus        76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666665555554444      134455556667777777777744

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.57  E-value=0.042  Score=35.58  Aligned_cols=62  Identities=8%  Similarity=-0.037  Sum_probs=28.5

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSAG------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY  197 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (349)
                      +..+...+...++++.|...|+...+.-      -.+....+..+..++.+.|+++.|...++++.+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3344444445555555555554443320      1123344445555555555555555555555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.49  E-value=0.059  Score=34.88  Aligned_cols=65  Identities=5%  Similarity=-0.151  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ......+...+...+++..|...++.+.+.      .-.+...++..+..++.+.|+++.|...++++...
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            344455666666666666666666655432      11235566777777777777777777777777765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.48  E-value=0.071  Score=36.71  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=41.2

Q ss_pred             cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                      .+++++|.++|+.+.+..-.. ...|-....--.++|+...|.+++...+..+.+| ...+...++
T Consensus        73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            367778888887775543333 5666666666677888888888888887776554 333333333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.46  E-value=0.11  Score=35.76  Aligned_cols=56  Identities=13%  Similarity=0.050  Sum_probs=37.3

Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018876          216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD  272 (349)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  272 (349)
                      .++.++|.++|+.++..+ +--...|....+--.+.|+...|.+++......+.+|.
T Consensus        73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            367777777777776542 22256666666666677788888888877777766543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.41  E-value=0.04  Score=36.81  Aligned_cols=85  Identities=14%  Similarity=0.009  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh---HHHHHHHHhhCCCC-chHHHHHHHHHHHHccCChHHH
Q 018876          217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK---LGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a  292 (349)
                      .....+.+-|......| .++..+-..+..++.++.+...   ++.+++.+...+.+ -.....-.|.-++.+.|++++|
T Consensus        15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            33445555555555545 3677777778888888877665   77788777765411 1344555677788899999999


Q ss_pred             HHHHHHHHhc
Q 018876          293 KGVLEVMQQR  302 (349)
Q Consensus       293 ~~~~~~~~~~  302 (349)
                      .+.++.+.+.
T Consensus        94 ~~~~~~lL~~  103 (126)
T 1nzn_A           94 LKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998888876

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.18  Score=36.00  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018876          179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG  258 (349)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  258 (349)
                      ...|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.....         +..+.-.|...|+.+...
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            3455555555554443      1445555555555555555555555554321         222333344445555444


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018876          259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL  296 (349)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  296 (349)
                      ++-+.....|-      ++.....+.-.|+++++.++|
T Consensus        81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL  112 (177)
T 3mkq_B           81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF  112 (177)
T ss_dssp             HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence            44444333321      222333344455555555555

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.22  E-value=0.12  Score=40.20  Aligned_cols=85  Identities=18%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc-Cc
Q 018876           43 FDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-KM  113 (349)
Q Consensus        43 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~  113 (349)
                      ...|...+++..+.   .|+   ...|..+...|.+     .|+.++|.+.|++.++.+..-+..++......+++. |+
T Consensus       179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            34667777777765   354   5577778877777     388888888888888764322467777777777774 88


Q ss_pred             hHHHHHHHHHHhccCCC
Q 018876          114 FAEMELTLVKMLSEDCE  130 (349)
Q Consensus       114 ~~~a~~~~~~~~~~~~~  130 (349)
                      .+++.+.+++.......
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            88888888888876544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.76  E-value=0.26  Score=33.30  Aligned_cols=141  Identities=16%  Similarity=0.136  Sum_probs=91.2

Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM  222 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  222 (349)
                      ..-.|..++..++..+.....   +..-|+.+|.-....-+-+-..++++.+-+.   .|.          ...|+....
T Consensus        17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence            445677888888888777653   4555666666555556666666666655432   111          234455555


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ...+-.+     ..+...+...+..+...|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.
T Consensus        81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            5544433     123355666677778888888888888886443 3467777778888888888888888888888888


Q ss_pred             CCC
Q 018876          303 GCK  305 (349)
Q Consensus       303 ~~~  305 (349)
                      |++
T Consensus       155 G~k  157 (172)
T 1wy6_A          155 GEK  157 (172)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.38  E-value=1.1  Score=37.88  Aligned_cols=255  Identities=7%  Similarity=0.029  Sum_probs=135.1

Q ss_pred             CChHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH----Hhc
Q 018876            6 KQPEKAHELFQAMVDE-----GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC----LKA   76 (349)
Q Consensus         6 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~   76 (349)
                      |+++.|++.+-.+.+.     +..........++..|...|+++...+.+..+....+..+  .....+++.+    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence            5677777777665543     1223455577788888888998888787777766544222  2223333332    223


Q ss_pred             CChhHH--HHHHHHHHhC--C-CCC---chHHHHHHHHHHhccCchHHHHHHHHHHhcc--CCCcc---hhhHHHHHHHH
Q 018876           77 FAFDKV--QALLSDMSTQ--G-IRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEPD---VWTMNCTLRAF  143 (349)
Q Consensus        77 ~~~~~a--~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~  143 (349)
                      ...+..  ..+.+.+...  | +-.   .......|...+...|++.+|.+++..+...  +....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            332221  1111111110  1 111   1223356777888889999998888887643  21111   34566677888


Q ss_pred             HccCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchHHHH----HHHHH
Q 018876          144 GNSGQIDTMEKCYEKFQS----AGIQPS--INTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYN----IVIDA  212 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~  212 (349)
                      ...+++..|..++.++..    ...+|+  ...+...+..+...+++.+|.+.|.++... ...-+...+.    .++.+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~  267 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF  267 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            888898888888887642    222222  234566677777888888888777666432 1111222221    11111


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc--CChhhHHHHHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA--GKPEKLGSVLR  262 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~  262 (349)
                      ..-.+....-..++.........++...+..++.+|...  .+++.+...+.
T Consensus       268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~  319 (445)
T 4b4t_P          268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE  319 (445)
T ss_dssp             HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred             HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence            112222222223333332222235567777787777643  23444444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.29  E-value=0.24  Score=33.05  Aligned_cols=81  Identities=9%  Similarity=-0.069  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH---HHHHHHHHhccCCCc--chhhHHHHHHHHHccCCHHHHHH
Q 018876           80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLSEDCEP--DVWTMNCTLRAFGNSGQIDTMEK  154 (349)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~  154 (349)
                      ..+.+-|......|. ++..+-..+..++.++.....   ++.+++.+...+ .|  .....-.+.-++.+.|++++|.+
T Consensus        18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            333444443333332 344444444445555443333   555555554442 12  22222333344455555555555


Q ss_pred             HHHHHHhc
Q 018876          155 CYEKFQSA  162 (349)
Q Consensus       155 ~~~~~~~~  162 (349)
                      .++.+.+.
T Consensus        96 ~~~~lL~~  103 (126)
T 1nzn_A           96 YVRGLLQT  103 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.53  E-value=0.21  Score=41.25  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 018876          241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTYRTM  314 (349)
Q Consensus       241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l  314 (349)
                      ...++..+...|+++++...+..+....+ .+...|..++.++.+.|+..+|++.|+.+.+     .|+.|...+-...
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            44566777788888888888877776553 4777888888888888888888888887654     3888877664443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.52  E-value=3  Score=38.65  Aligned_cols=259  Identities=9%  Similarity=-0.026  Sum_probs=127.1

Q ss_pred             HHHcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------CCchHHHHHHHHH
Q 018876           36 AYGRSGLFDKAFSLLEHMKNTP-DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI-------RPNTVTYNTLIDA  107 (349)
Q Consensus        36 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~  107 (349)
                      +....|+.++++.++....... .-.+....-..+.-+.+..|..+++..++.......-       .+....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            4566777777777776665421 1122233333444455555555566666665544311       0112222223333


Q ss_pred             HhccCc-hHHHHHHHHHHhccCCCcchh--hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcC
Q 018876          108 YGRAKM-FAEMELTLVKMLSEDCEPDVW--TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD--SYGKAG  182 (349)
Q Consensus       108 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~  182 (349)
                      ++..|. -+++...+..+.... .+...  .--.+...+...|+.+....++..+.+..   +..+...+..  ++...|
T Consensus       463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence            333332 234455555554332 11111  11223334556677776667776665532   2223332333  334567


Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018876          183 HFEKMSAVMEYMQKYHYSWTIVTYN--IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV  260 (349)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  260 (349)
                      +.+.+..+.+.+.... .|....-.  ++..+|+..|+......++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus       539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            7777777777766532 22222222  23345667777766666777776532 22333333333344456666667777


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 018876          261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQ  301 (349)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~  301 (349)
                      ++.+.+.+ .|..+.-..+.-+....|.. .++..++..+..
T Consensus       617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            76665543 34544444444444444443 456667776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.50  E-value=0.53  Score=42.37  Aligned_cols=54  Identities=13%  Similarity=-0.044  Sum_probs=39.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      ...+...|+++-|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            445566778888888887776543 445677888888888888888887777665

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.41  E-value=4.1e-05  Score=63.40  Aligned_cols=245  Identities=13%  Similarity=0.133  Sum_probs=158.1

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      .+.+|..|..+....++..+|++.|-+.       .|+..|..++.++.+.|.+++....+...++..  .++..=+.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence            4567888999988889888888776222       244557788889999999999998887766653  2445556888


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc--------------------CCC
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--------------------GIQ  165 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~  165 (349)
                      -+|++.++..+..+++       ..|+..-...+..-|...|.++.|.-+|..+...                    .-.
T Consensus       124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA  196 (624)
T 3lvg_A          124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  196 (624)
T ss_dssp             HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred             HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999998765543322       1234444444555555555555554444332211                    113


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      .++.||..+-.+|...+++.-|...--.+.-     .+.....++..|-..|.+++.+.+++...... +....+|+-|.
T Consensus       197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa  270 (624)
T 3lvg_A          197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA  270 (624)
T ss_dssp             CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred             CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence            4677899999999999888777655444332     22223346667888899999999998876432 56678888887


Q ss_pred             HHHHhcCChhhHHHHHHHHhhC-CCC------chHHHHHHHHHHHHccCChHHHH
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNS-DIM------LDTVFFNCLVDAYGRLKCFAEMK  293 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~  293 (349)
                      -.|++- ++++..+.++..-.+ +++      -....|..++-.|.+-.+++.|.
T Consensus       271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            777654 677666665544322 221      12446777777777777777664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.40  E-value=3.3  Score=39.80  Aligned_cols=52  Identities=12%  Similarity=0.036  Sum_probs=31.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018876           32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM   89 (349)
Q Consensus        32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   89 (349)
                      .++..+...+..+-+.++.....      .+...--.+..++...|++++|...|.+.
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            45555666666666665544332      23333345566777788888888877654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.37  E-value=9.6e-05  Score=61.26  Aligned_cols=248  Identities=14%  Similarity=0.125  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876           63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA  142 (349)
Q Consensus        63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  142 (349)
                      +..|..|..+..+.+.+.+|++.|   ++.+   |+..|..++.+..+.|.+++-.+.+...++..-.|  ..=+.++-+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence            456888899998988888887655   3332   66788999999999999999999888777664344  344689999


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCc
Q 018876          143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------------------YSWT  202 (349)
Q Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~  202 (349)
                      |++.++..+.++++.       .||..-...+.+-|...|.++.|.-+|..+....                    -.-+
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns  198 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS  198 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999776554432       3555556667777778888877777766543211                    1236


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876          203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA  282 (349)
Q Consensus       203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  282 (349)
                      +.||..+-.+|...+.+.-|...--.++-.   |+  -...++..|...|.+++.+.+++...... .....+|+.|.-.
T Consensus       199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL  272 (624)
T 3lvg_A          199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL  272 (624)
T ss_dssp             SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence            788999988999998888776665444421   21  22346667888999999999998887543 3578899999998


Q ss_pred             HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876          283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD  338 (349)
Q Consensus       283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  338 (349)
                      |++- ++++..+-++..-.+   .|   .-.+|++|.+.--|.++.-++....+.+
T Consensus       273 YsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ydE~D  321 (624)
T 3lvg_A          273 YSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYEEYD  321 (624)
T ss_dssp             HHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred             HHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence            8886 344444444332211   11   1134555555555555555555444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.18  E-value=3.5  Score=38.17  Aligned_cols=295  Identities=9%  Similarity=-0.009  Sum_probs=156.6

Q ss_pred             HHHHHHHHcCCChhHH-HHH-HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCchHHHHHHHH
Q 018876           31 TALLSAYGRSGLFDKA-FSL-LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTLID  106 (349)
Q Consensus        31 ~~l~~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~  106 (349)
                      ..+..++...|--.+. +.. .+++.+.   .+....-.+.--+....|+.+++..+++.....+  -.+....=..+.-
T Consensus       343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL  419 (963)
T 4ady_A          343 VSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL  419 (963)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence            3566777777754332 221 2344433   2223333334456778899998888887766521  1222233333445


Q ss_pred             HHhccCchHHHHHHHHHHhccCC-------CcchhhHHHHHHH--HHccCCHHHHHHHHHHHHhcCCCCCHHHHH--HHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDC-------EPDVWTMNCTLRA--FGNSGQIDTMEKCYEKFQSAGIQPSINTFN--ILL  175 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~  175 (349)
                      +.+..|...++..++.......-       .+....-..+.-+  +...++ +++.+.+..+....- +......  ++.
T Consensus       420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALG  497 (963)
T 4ady_A          420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMG  497 (963)
T ss_dssp             HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence            55666666677777776654321       1222222333333  333444 345555555554321 1111122  233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCC
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT--LCSLVRAYGHAGK  253 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~  253 (349)
                      ..+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .|....  ...+.-+|+..|+
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred             hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence            33456788888888887776542 1122222333334457889899999988887642 333222  2234456778888


Q ss_pred             hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCch-hhhHHHHH
Q 018876          254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK-NHAKEFQD  332 (349)
Q Consensus       254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~  332 (349)
                      .....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. ..+...+.
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            887777888887643 2344444444445556777777777777666543 34444444444444444443 23444444


Q ss_pred             HH
Q 018876          333 LV  334 (349)
Q Consensus       333 ~~  334 (349)
                      .+
T Consensus       654 ~L  655 (963)
T 4ady_A          654 PL  655 (963)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.15  E-value=4.3  Score=39.02  Aligned_cols=194  Identities=8%  Similarity=-0.020  Sum_probs=119.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---------------
Q 018876          139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY---------------  199 (349)
Q Consensus       139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------------  199 (349)
                      ++..+...+..+.+.++...     .+.+...--.+..++...|++++|...|.+....    ..               
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34444555555555443322     2234444456677889999999999999765210    00               


Q ss_pred             ---CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018876          200 ---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD  272 (349)
Q Consensus       200 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  272 (349)
                         ..-..-|..++..+.+.+.++.+.++-+...+.....+    ...|..+++++...|++++|...+-.+.....+  
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence               00123467788888899999999988877765432211    236788999999999999999999887765443  


Q ss_pred             HHHHHHHHHHHHccCChH------------HHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCchhhhHH-HHHHHHHh
Q 018876          273 TVFFNCLVDAYGRLKCFA------------EMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEKM  337 (349)
Q Consensus       273 ~~~~~~li~~~~~~g~~~------------~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~  337 (349)
                      ......|+...+..|..+            +..+++..--+.  .+...+.-|..|-.-+...|++..|-. +++.+.++
T Consensus       971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            456667777777655444            444444332211  111112334445455566777776655 66777776


Q ss_pred             HH
Q 018876          338 DE  339 (349)
Q Consensus       338 ~~  339 (349)
                      ..
T Consensus      1051 ~~ 1052 (1139)
T 4fhn_B         1051 IS 1052 (1139)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.08  E-value=0.85  Score=41.08  Aligned_cols=127  Identities=9%  Similarity=0.064  Sum_probs=69.7

Q ss_pred             HHHHHHHhccCc-hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhc------CCCC-CH----
Q 018876          102 NTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSA------GIQP-SI----  168 (349)
Q Consensus       102 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~----  168 (349)
                      ..++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+.      ..++ +.    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            344445555555 46677788877765322222222233333333322 22344444443321      1111 11    


Q ss_pred             ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876          169 ------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       169 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  229 (349)
                            .....=.+.+...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                  11122234455678888888888887766433 6788888888888888888888777765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.01  E-value=0.88  Score=30.61  Aligned_cols=68  Identities=7%  Similarity=-0.054  Sum_probs=47.8

Q ss_pred             CCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          235 KPSCVTLCSLVRAYGHAGKP---EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .|+..+-..+..++.++.+.   .+++.+++.+.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            56666666777777777664   356777777766553224555666777888888888888888888876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.91  E-value=0.5  Score=39.07  Aligned_cols=73  Identities=11%  Similarity=0.000  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc-----cCCCcchhhHHH
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMNC  138 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  138 (349)
                      +...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+     .|+.|+..+-..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            34456666777788888887777776653 45677778888888888888888887777654     277777655433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.40  E-value=0.9  Score=28.76  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=24.4

Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555555554443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.11  E-value=1.9  Score=29.38  Aligned_cols=68  Identities=7%  Similarity=-0.051  Sum_probs=48.5

Q ss_pred             CCcHHHHHHHHHHHHhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          235 KPSCVTLCSLVRAYGHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .|+..+-..+..++.++.+.+   +++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            566777777777787777644   56677777766543334455556777888888888888888888876

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.05  E-value=1.9  Score=29.04  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=27.8

Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +..+-++.+...++.|++.+....+++|-+.+++..|.++|+-.+.+
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K  117 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK  117 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34445555555555666666666666666666666666666655544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=91.95  E-value=6.2  Score=34.83  Aligned_cols=80  Identities=9%  Similarity=-0.035  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018876           64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF  143 (349)
Q Consensus        64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  143 (349)
                      ..-+..+..+.+.+++.....++..     .+.+...-.....+....|+..+|......+-..| ......+..++..+
T Consensus        73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~  146 (618)
T 1qsa_A           73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW  146 (618)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence            3344556667777777766654432     23355555556677777788777777666665554 34455667777777


Q ss_pred             HccCCH
Q 018876          144 GNSGQI  149 (349)
Q Consensus       144 ~~~~~~  149 (349)
                      .+.|..
T Consensus       147 ~~~g~l  152 (618)
T 1qsa_A          147 RASGKQ  152 (618)
T ss_dssp             HHTTCS
T ss_pred             HHCCCC
Confidence            765544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.58  E-value=1.8  Score=30.41  Aligned_cols=70  Identities=9%  Similarity=0.076  Sum_probs=45.3

Q ss_pred             CCCCch--hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018876           22 GCDANT--QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-------NTYSILIKSCLKAFAFDKVQALLSDMST   91 (349)
Q Consensus        22 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~   91 (349)
                      |..|..  ..+-.-+..+...|.++.|+-+.+.+....+..|+.       .++..+..++...+++.+|...|++.+.
T Consensus        13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            444433  344455677888999999988887765432223442       3456677888899999999999998644

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=91.06  E-value=2.5  Score=28.48  Aligned_cols=62  Identities=8%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018876          218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV  280 (349)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  280 (349)
                      |.-+..+-++.+....+.|++.+....+++|-+.+++..|.++++-++..- .+...+|..++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence            334455666666677778888888888888888888888888888776542 22344565554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.03  E-value=1.9  Score=28.97  Aligned_cols=72  Identities=7%  Similarity=-0.139  Sum_probs=53.4

Q ss_pred             CCchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          269 IMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       269 ~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      ..|+..+--.+..++.+..+   ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.++.+.+.+.++.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            34566666667777777665   4568889999887752223556667777999999999999999999887654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.72  E-value=4.9  Score=33.67  Aligned_cols=95  Identities=8%  Similarity=-0.155  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCcHHH--HH
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RIKPSCVT--LC  242 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~  242 (349)
                      +...+...|.+.|+.+.|.+.+.++......  .-...+-..++.+...+++..+...+.++...   +..|+...  ..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4566777788888888888888887654322  23456666777777778888887777776432   22222211  01


Q ss_pred             HHHHHHHhcCChhhHHHHHHHH
Q 018876          243 SLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       243 ~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      .-...+...+++..|...|-..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~  234 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDS  234 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHH
Confidence            1112233456666666655444

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.43  E-value=2.7  Score=26.48  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=42.8

Q ss_pred             ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHH
Q 018876           42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL  121 (349)
Q Consensus        42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  121 (349)
                      ..++|..+-+.+...+  . ...+--+-+..+.+.|++++|..+.+.+.    -||...|-.|-.  .+.|..+++...+
T Consensus        21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL   91 (115)
T 2uwj_G           21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL   91 (115)
T ss_dssp             CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence            4556666666665542  1 22222223345556666666665543332    456665554433  2555556666666


Q ss_pred             HHHhccCCCcchhhH
Q 018876          122 VKMLSEDCEPDVWTM  136 (349)
Q Consensus       122 ~~~~~~~~~~~~~~~  136 (349)
                      ..+..+| .|....|
T Consensus        92 ~~la~sg-~p~~q~F  105 (115)
T 2uwj_G           92 AGLGGSS-DPALADF  105 (115)
T ss_dssp             HHHHTCS-SHHHHHH
T ss_pred             HHHHhCC-CHHHHHH
Confidence            5555555 4444333

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.15  E-value=2.9  Score=26.41  Aligned_cols=86  Identities=13%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHH
Q 018876           41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT  120 (349)
Q Consensus        41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  120 (349)
                      ...++|..+-+.+...+  . ...+--+-+..+.+.|++++|..+.+.+.    -||...|-.|-..  +.|..+++...
T Consensus        21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r   91 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESR   91 (116)
T ss_dssp             TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence            34566666666666542  1 22222233445666777777766654433    5666666555433  55666666666


Q ss_pred             HHHHhccCCCcchhhH
Q 018876          121 LVKMLSEDCEPDVWTM  136 (349)
Q Consensus       121 ~~~~~~~~~~~~~~~~  136 (349)
                      +..+..+| .|....|
T Consensus        92 L~~la~sg-~p~~q~F  106 (116)
T 2p58_C           92 LNRLARSQ-DPRIQTF  106 (116)
T ss_dssp             HHHHTTCC-CHHHHHH
T ss_pred             HHHHHhCC-CHHHHHH
Confidence            65665555 4444444

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.03  E-value=3  Score=26.45  Aligned_cols=47  Identities=11%  Similarity=0.229  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018876          151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY  197 (349)
Q Consensus       151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (349)
                      +..+-++.+......|++.+..+.+++|.+.+++..|.++|+-++..
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444455555555566666666666666666666666666555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.74  E-value=4.2  Score=27.75  Aligned_cols=71  Identities=7%  Similarity=-0.129  Sum_probs=52.9

Q ss_pred             CchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876          270 MLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET  340 (349)
Q Consensus       270 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  340 (349)
                      .|+..+--.+..++.+..+   ..+++.+++++.+.+..-.....-.+.-++.+.|+++.|.++.+.+.++++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            4566666667777877765   4568889999888643323445556667999999999999999999887664

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.47  E-value=15  Score=32.52  Aligned_cols=249  Identities=9%  Similarity=-0.033  Sum_probs=128.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018876           33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK  112 (349)
Q Consensus        33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (349)
                      -+..+.+.+++...+..+..      .+.+...-.....+....|+..+|......+-..|. .....+..++..+.+.|
T Consensus        78 ~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g  150 (618)
T 1qsa_A           78 FVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG  150 (618)
T ss_dssp             HHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence            34455556666555543321      144555556677778888988878777777766653 35566777777777655


Q ss_pred             chHH--HHHHHHHHhccCC-----------Ccchh-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH---HHHHHH
Q 018876          113 MFAE--MELTLVKMLSEDC-----------EPDVW-TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN---TFNILL  175 (349)
Q Consensus       113 ~~~~--a~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~  175 (349)
                      .+..  ...-++.+...+-           +++.. ....++....+   ...+.....   .  ..++..   .+...+
T Consensus       151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~~  222 (618)
T 1qsa_A          151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAF  222 (618)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHHHHHH
Confidence            4322  3333333333321           11111 11111111111   111111111   1  122222   122223


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018876          176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY----NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA  251 (349)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  251 (349)
                      .-+.+. +.+.|...+....+... .+....    ..+...+...+...++...+.......  .+.....-.+....+.
T Consensus       223 ~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~  298 (618)
T 1qsa_A          223 ASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT  298 (618)
T ss_dssp             HHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred             HHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence            333333 77888888887765431 232222    222223334442445555555544332  3333334444455577


Q ss_pred             CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      |+++.|...|..+..... ......--+..++...|+.++|..+|+.+..
T Consensus       299 ~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            899999999988866322 2344444566778888999999888887653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.99  E-value=10  Score=31.68  Aligned_cols=58  Identities=9%  Similarity=-0.165  Sum_probs=26.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCchHHHHHHHHHH
Q 018876           67 SILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM  124 (349)
Q Consensus        67 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  124 (349)
                      ..+...+.+.|+++.|.+.+.++...  +..--...+-.+++.+...+++..+...+.+.
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            33444445555555555555554432  11222333444444444455555554444443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.57  E-value=2.6  Score=32.39  Aligned_cols=54  Identities=17%  Similarity=0.120  Sum_probs=27.1

Q ss_pred             HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      +.+.|+++++++....-.+..  +.|...-..++..+|-.|++++|.+-++...+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            344555555555554444332  344444555555555555555555555554443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.24  E-value=14  Score=29.29  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=16.0

Q ss_pred             HHHccCchhhhHHHHHHHHHh
Q 018876          317 AYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      -|...|+...|..+++.+.+.
T Consensus       197 ~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          197 NYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            355678899999998877654

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.85  E-value=6.9  Score=24.72  Aligned_cols=78  Identities=6%  Similarity=-0.017  Sum_probs=36.4

Q ss_pred             ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018876           78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE  157 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  157 (349)
                      ..++|..+-+-+...+.  ...+--.-+..+...|++++|..+.+...    .||...|..+..  .+.|-.+++...+.
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            44555555555554432  11111112234445566666655443332    555555544432  35555555555555


Q ss_pred             HHHhcC
Q 018876          158 KFQSAG  163 (349)
Q Consensus       158 ~~~~~~  163 (349)
                      .+...|
T Consensus        93 ~la~sg   98 (115)
T 2uwj_G           93 GLGGSS   98 (115)
T ss_dssp             HHHTCS
T ss_pred             HHHhCC
Confidence            555554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.11  E-value=7.5  Score=24.61  Aligned_cols=78  Identities=9%  Similarity=0.018  Sum_probs=36.4

Q ss_pred             ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018876           78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE  157 (349)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  157 (349)
                      ..++|..+-+-+...+.  ...+--.-+..+...|++++|..+.+...    .||...|..+..  .+.|-.+++...+.
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   93 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN   93 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            44555555555554432  11111112234445566666655554432    555555544432  34555555555555


Q ss_pred             HHHhcC
Q 018876          158 KFQSAG  163 (349)
Q Consensus       158 ~~~~~~  163 (349)
                      .+...|
T Consensus        94 ~la~sg   99 (116)
T 2p58_C           94 RLARSQ   99 (116)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            555544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.80  E-value=22  Score=29.88  Aligned_cols=259  Identities=10%  Similarity=0.081  Sum_probs=148.4

Q ss_pred             CChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCchHH--HHHHHHHHhccCc
Q 018876           41 GLFDKAFSLLEHMKN----TPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVT--YNTLIDAYGRAKM  113 (349)
Q Consensus        41 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~~~~~  113 (349)
                      |+++.|++.+-.+.+    .............++..|...++++...+.+.-+.+. |..+...+  .+.++........
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            677888777755543    2233556777888999999999999988877766544 43333222  1222222222222


Q ss_pred             hH--HHHHHHHHHhc--cC-CCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 018876          114 FA--EMELTLVKMLS--ED-CEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--GIQPS---INTFNILLDSYGK  180 (349)
Q Consensus       114 ~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~  180 (349)
                      .+  .-..+.+....  .| +..   .......+...+...|++.+|.+++..+...  |....   ...+..-++.|..
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            22  22222222211  11 111   2233456788899999999999999998643  22211   3456777889999


Q ss_pred             cCCHHHHHHHHHHHHh----cCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHH----HHHHHHHH
Q 018876          181 AGHFEKMSAVMEYMQK----YHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTL----CSLVRAYG  249 (349)
Q Consensus       181 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~~~~  249 (349)
                      .+++..|..++.++..    ....|+  ...+...+..+...+++.+|...|.++... ....+...+    ..++.+..
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i  269 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV  269 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999988743    222222  245666777788899999998888776532 111122211    22222222


Q ss_pred             hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--CChHHHHHHHHHH
Q 018876          250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVM  299 (349)
Q Consensus       250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~  299 (349)
                      -.+....-..++.........++...|..++.+|...  .++..+.+.|...
T Consensus       270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~  321 (445)
T 4b4t_P          270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV  321 (445)
T ss_dssp             HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred             hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence            2222222223333322222235777888899988764  4566666655443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=80.52  E-value=13  Score=26.22  Aligned_cols=24  Identities=4%  Similarity=0.038  Sum_probs=11.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHH
Q 018876          206 YNIVIDAFGRAGDLKQMEYLFRLM  229 (349)
Q Consensus       206 ~~~l~~~~~~~~~~~~a~~~~~~~  229 (349)
                      +..+.+++...+++..|...|++.
T Consensus        66 l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           66 LVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHH
Confidence            333444444445555555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.43
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.33
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.28
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.99
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.89
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.86
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.71
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.67
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.64
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.51
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.5
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.34
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.3
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.16
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.67
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.57
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.18
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	97.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.05
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.99
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.38
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.84
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.72
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.41
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.44
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	92.66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-22  Score=165.62  Aligned_cols=327  Identities=11%  Similarity=-0.022  Sum_probs=261.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      .+.|++++|++.++++.+.. |-++.++..+..++.+.|++++|...|+++.+..  +.+..++..+..++.+.|++++|
T Consensus        10 ~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_          10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccccc
Confidence            35799999999999998874 4568889999999999999999999999998763  45678899999999999999999


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHH----------------------------------HHhccCchHHHHHHHHHHhccC
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLID----------------------------------AYGRAKMFAEMELTLVKMLSED  128 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~  128 (349)
                      ...+......... +.........                                  .....+....+...+.+.....
T Consensus        87 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T d1w3ba_          87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ  165 (388)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence            9999998876432 2222222221                                  2222333444444444444332


Q ss_pred             CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018876          129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI  208 (349)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (349)
                       +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++........ +...+..
T Consensus       166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  242 (388)
T d1w3ba_         166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN  242 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHH
Confidence             3345667777888899999999999999988764 346778888999999999999999999998877643 6777888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018876          209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC  288 (349)
Q Consensus       209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  288 (349)
                      +...+.+.|++++|...+++..+.. +-+..++..+...+...|++++|...++......+ .+...+..+...+...|+
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCC
Confidence            8899999999999999999988764 44567888899999999999999999998887653 477888889999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          289 FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       289 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +++|...|++..+... -+..++..+..+|...|++++|.+.++...++++
T Consensus       321 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999887632 2577888899999999999999999998887654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-20  Score=153.22  Aligned_cols=311  Identities=11%  Similarity=0.026  Sum_probs=252.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh------
Q 018876            2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK------   75 (349)
Q Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------   75 (349)
                      |.+.|++++|++.|++..+.. |.+..+|..+..++.+.|++++|++.+.......  +.+.............      
T Consensus        43 ~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  119 (388)
T d1w3ba_          43 HFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEG  119 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccc--cccccccccccccccccccccc
Confidence            456899999999999999874 5567889999999999999999999999887753  2333333333322222      


Q ss_pred             ----------------------------cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876           76 ----------------------------AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE  127 (349)
Q Consensus        76 ----------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  127 (349)
                                                  .+....+...+....... +-+...+..+...+...|++++|...+++..+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  198 (388)
T d1w3ba_         120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL  198 (388)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh
Confidence                                        233334444444444432 335667778888999999999999999998876


Q ss_pred             CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876          128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN  207 (349)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  207 (349)
                      . +.+...+..+...+...|++++|...+.+..... +.+...+..+...+.+.|++++|...|++..+..+. +...+.
T Consensus       199 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~  275 (388)
T d1w3ba_         199 D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYC  275 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHH
T ss_pred             C-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence            4 4456788889999999999999999999998875 447778888999999999999999999999887643 678899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK  287 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  287 (349)
                      .+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+..+. +..++..+..+|.+.|
T Consensus       276 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         276 NLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            99999999999999999999987664 567788899999999999999999999999886543 6778899999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCc
Q 018876          288 CFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGM  323 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  323 (349)
                      ++++|...|++..+.  .| +...|..+..+|.+.||
T Consensus       354 ~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         354 KLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            999999999999876  44 57788999888887775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-15  Score=121.03  Aligned_cols=259  Identities=8%  Similarity=-0.053  Sum_probs=170.0

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 018876           32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA  111 (349)
Q Consensus        32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (349)
                      .....+.+.|++++|+..|+++.+..  |-+..+|..+..++...|++++|...+.+..+.. +-+...+..+..+|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            34555667777777777777766653  3456667777777777777777777777766653 22455666666677777


Q ss_pred             CchHHHHHHHHHHhccCCC--------------cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Q 018876          112 KMFAEMELTLVKMLSEDCE--------------PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLD  176 (349)
Q Consensus       112 ~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~  176 (349)
                      |++++|.+.+++.......              .+.......+..+...+.+.++.+.+.+..+... ..+..++..+..
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            7777777777665543110              0111222233344555667778887777665432 235667777778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      .+...|++++|...+++.....+. +...|..+...+...|++++|...+++..+.. +-+..++..+..+|...|++++
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHH
Confidence            888888888888888887776533 57778888888888888888888888877653 3356677888888888888888


Q ss_pred             HHHHHHHHhhC----------CCCchHHHHHHHHHHHHccCChHHHHHH
Q 018876          257 LGSVLRFIDNS----------DIMLDTVFFNCLVDAYGRLKCFAEMKGV  295 (349)
Q Consensus       257 a~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~a~~~  295 (349)
                      |...|+...+.          ........|..+-.++...|+.+.+...
T Consensus       259 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         259 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888776541          1123445677777777777777655433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.6e-15  Score=118.56  Aligned_cols=258  Identities=11%  Similarity=-0.049  Sum_probs=178.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018876           68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG  147 (349)
Q Consensus        68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (349)
                      .....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...+++..+.. +-+...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            34556778888888888888888763 3356778888888888888888888888877654 345667777778888888


Q ss_pred             CHHHHHHHHHHHHhcCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Q 018876          148 QIDTMEKCYEKFQSAGIQ--------------PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-SWTIVTYNIVIDA  212 (349)
Q Consensus       148 ~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~  212 (349)
                      ++++|.+.++........              .+.......+..+...+...+|...+.+..+..+ .++...+..+...
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            888888888877653211              1112233334445566677778888877665442 2345667777778


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH
Q 018876          213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM  292 (349)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  292 (349)
                      +...|++++|...++...... +-+..+|..+..++...|++++|...++.+.+..+ -+..+|..+..+|.+.|++++|
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHH
Confidence            888888888888888877654 34567777888888888888888888888776543 2566777888888888888888


Q ss_pred             HHHHHHHHhc----------CCCCCHHHHHHHHHHHHccCchhhhHH
Q 018876          293 KGVLEVMQQR----------GCKPDKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       293 ~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      ...|++..+.          ........|..+-.++...|+.+.+..
T Consensus       260 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         260 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888877652          122234556666667766676665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5e-10  Score=90.18  Aligned_cols=302  Identities=11%  Similarity=-0.011  Sum_probs=209.8

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-chH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQG----IRP-NTV   99 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~   99 (349)
                      .........+...|++++|++++++.....+-.++   ..++..+..++...|++++|...+++.....    ..+ ...
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            33444566688999999999999998765321111   2467778889999999999999999876531    111 133


Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhcc----CC--Cc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC----CCCCH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----DC--EP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG----IQPSI  168 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~  168 (349)
                      .+..+...+...|++..+...+.+....    ..  .+ ....+..+...+...|+++.+...+.......    .....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            4566677888899999999888876532    11  11 22345566778889999999999998877642    22234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CcHH
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK---PSCV  239 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~  239 (349)
                      ..+......+...++...+...+.......    ..+  ....+......+...|+++.|...+.........   ....
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            556666777888999999988887664421    111  1334566677788999999999999887654322   2234


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCC----
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDN----SDIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKP----  306 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p----  306 (349)
                      .+..+..++...|++++|...++.+..    .+..| ....+..+...|.+.|++++|.+.+++....    |...    
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~  332 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI  332 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence            566678899999999999999988753    23333 3457788889999999999999999987653    3221    


Q ss_pred             CHHHHHHHHHHHHccCchhhhHH
Q 018876          307 DKVTYRTMVRAYSTNGMKNHAKE  329 (349)
Q Consensus       307 ~~~~~~~l~~~~~~~g~~~~a~~  329 (349)
                      ....+..++..+...+..+++.+
T Consensus       333 ~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         333 EGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             THHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHH
Confidence            22345556666777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-10  Score=92.67  Aligned_cols=216  Identities=8%  Similarity=-0.046  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018876           63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLR  141 (349)
Q Consensus        63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  141 (349)
                      ...++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..+++..+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            4556667777778888888888888888874 335667777777777665 4788888888887765 456777888888


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC---
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD---  218 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  218 (349)
                      .+.+.|++++|+..++++.+.. +.+...|..+...+...|++++|...++++.+.++. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            8888888888888888888764 347778888888888888888888888888877644 66777776666655554   


Q ss_pred             ---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHH
Q 018876          219 ---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYG  284 (349)
Q Consensus       219 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~  284 (349)
                         +++|...+..+.+.. +.+...|..+...+. ....+++...++...+....+ +...+..++..|.
T Consensus       199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence               456777777766654 345566665555443 344566667776665543322 3444455555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-10  Score=90.97  Aligned_cols=216  Identities=9%  Similarity=0.025  Sum_probs=170.7

Q ss_pred             hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018876           27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLI  105 (349)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  105 (349)
                      ..+++.+...+.+.+.+++|+++++++.+..  |-+..+|+....++...+ ++++|...++...+.. +-+..+|+.+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            4567778888889999999999999999874  567778999998888876 5899999999998875 34788999999


Q ss_pred             HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--
Q 018876          106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH--  183 (349)
Q Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  183 (349)
                      ..+.+.|++++|+..++++.+.. +.+...|..+...+...|++++|++.++++.+.. +.+...|+.+...+.+.+.  
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence            99999999999999999999875 5578899999999999999999999999999985 3377788877777766665  


Q ss_pred             ----HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHH
Q 018876          184 ----FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PSCVTLCSLVRAYG  249 (349)
Q Consensus       184 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~  249 (349)
                          +++|...+....+..+. +...|+.+...+.. ...+++...++...+.... .+...+..+...+.
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence                57888888888887643 67777777666544 4467788888777654322 23445555555553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.4e-10  Score=91.77  Aligned_cols=188  Identities=6%  Similarity=-0.037  Sum_probs=128.8

Q ss_pred             chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876          113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME  192 (349)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  192 (349)
                      ..++|..+|++..+...+.+...|...+......|+.+.|..+|+++.+.........|...+....+.|+.+.|..+|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            35677777777776544455566677777777888888888888887765433334567777777778888888888888


Q ss_pred             HHHhcCCCCchHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-C
Q 018876          193 YMQKYHYSWTIVTYNIVIDA-FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI-M  270 (349)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~  270 (349)
                      .+.+..+. +...|...... +...|+.+.|..+|+.+.... +.+...|...+..+...|+.+.|..+|++...... .
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            87766533 34444443332 334577788888888777652 44567777778878888888888888888766432 2


Q ss_pred             ch--HHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          271 LD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       271 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      |+  ...|...+..-...|+.+.+.++++++.+.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            22  346777777777778888888888777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.5e-10  Score=91.56  Aligned_cols=191  Identities=11%  Similarity=0.041  Sum_probs=153.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 018876          147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF  226 (349)
Q Consensus       147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  226 (349)
                      +..++|..+|++..+...+.+...|...+......|+.+.|..+|+.+.+.........|...+..+.+.|+.+.|..+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578889999988765566777888889999999999999999999988665444567899999999999999999999


Q ss_pred             HHHHhCCCCCcHHHHHHHHHH-HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC-C
Q 018876          227 RLMRSERIKPSCVTLCSLVRA-YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG-C  304 (349)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~  304 (349)
                      ..+.+.. +.+...|...... +...|+.+.|..+|+.+....+ .+...|...+..+.+.|+++.|..+|++..... .
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9998765 3344444444332 3456899999999999987643 467899999999999999999999999998864 3


Q ss_pred             CCC--HHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          305 KPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       305 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      .|+  ...|...+.--...|+.+.+..+.+++.+.-+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            443  35788888877889999999999988766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.5e-10  Score=90.46  Aligned_cols=275  Identities=12%  Similarity=0.022  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhccC----C-Ccchhh
Q 018876           65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSED----C-EPDVWT  135 (349)
Q Consensus        65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~  135 (349)
                      ........+...|++++|.+++++........+    ...+..+..++...|++++|...+++.....    . ......
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344456678899999999999999887632111    2456777889999999999999999886531    1 112345


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchH
Q 018876          136 MNCTLRAFGNSGQIDTMEKCYEKFQSA----GIQ--P-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSWTIV  204 (349)
Q Consensus       136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~  204 (349)
                      +..+...+...|++..+...+......    +..  + ....+..+...+...|+++.+...+.......    ......
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            566777888999999999988876542    111  1 22345667778889999999999998876543    222345


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---chHHH
Q 018876          205 TYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM---LDTVF  275 (349)
Q Consensus       205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~  275 (349)
                      .+......+...++...+...+......    +..+  ....+......+...|+++.|...+.........   .....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            5666677778889999988888766432    1111  1234556677788999999999999987654322   23456


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE  339 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  339 (349)
                      +..+..++...|++++|...++.....    +..|+ ...+..+..+|...|++++|.+.++...++.+
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            667888999999999999999987643    44443 45677888899999999999999988777654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.7e-11  Score=96.39  Aligned_cols=276  Identities=8%  Similarity=-0.050  Sum_probs=193.2

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----------hcCChhHHHHHHHHHHhCCCCCchH
Q 018876           30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL----------KAFAFDKVQALLSDMSTQGIRPNTV   99 (349)
Q Consensus        30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~   99 (349)
                      ...++......+..++|+++++++....  |-+...|+..-..+.          ..+.+++|+.+++...+.. +-+..
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~  108 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG  108 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence            4444444444455689999999998763  334445544333322          2344788999999988764 33666


Q ss_pred             HHHHHHHHHhccC--chHHHHHHHHHHhccCCCcchhhHH-HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          100 TYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMN-CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD  176 (349)
Q Consensus       100 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  176 (349)
                      .|..+..++...+  ++++|...+.++.... +++...+. .....+...+.+++|+..++.+.+.. +-+...|..+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~  186 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC  186 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence            7777766666655  5889999999998765 34444443 44567778899999999999988875 347888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      .+.+.|++++|...+....+..  |+  . ..+...+...+..+++...+....... +++...+..+...+...++.++
T Consensus       187 ~~~~~~~~~~A~~~~~~~~~~~--~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~  260 (334)
T d1dcea1         187 LLPQLHPQPDSGPQGRLPENVL--LK--E-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE  260 (334)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHH--HH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHhHHhH--HH--H-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence            9999999888766655443321  11  1 122333455677778888887776654 4455566667777888899999


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 018876          257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYS  319 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~  319 (349)
                      |...+.......+ -+..++..+...|...|++++|.+.++...+.  .|+ ...|..+...+.
T Consensus       261 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         261 SCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            9999998887653 36778888999999999999999999999987  454 445555544443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.5e-10  Score=89.16  Aligned_cols=152  Identities=12%  Similarity=-0.029  Sum_probs=92.2

Q ss_pred             CChHHHHHHHHHHHhcCC-CC--chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            6 KQPEKAHELFQAMVDEGC-DA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         6 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      ++.+.|+.-++++..... .+  ...+|..+..+|.+.|++++|++.|++..+..  +-+..+|..+..++.+.|++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHh
Confidence            344556666666664321 11  23456666777777888888888887777653  45667777777777777888888


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS  161 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  161 (349)
                      +..|++..+.. +-+..++..+..++...|++++|...+++..+.. +.+......+...+.+.+..+.+..+......
T Consensus        91 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          91 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            87777777753 2245566677777777777777777777776653 22333333333333444444444444444333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=3.4e-11  Score=96.55  Aligned_cols=266  Identities=8%  Similarity=-0.049  Sum_probs=191.5

Q ss_pred             ChHHHHHHHHHHHhcCCCCchhhHHHHHHH---HHc-------CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 018876            7 QPEKAHELFQAMVDEGCDANTQSFTALLSA---YGR-------SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKA   76 (349)
Q Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   76 (349)
                      ..++|+++++.+.+.. |-+...|+..-..   +..       .|++++|+.+++...+..  +.+...|..+..++...
T Consensus        44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHh
Confidence            3489999999999874 3344456443333   222       344788999999988763  55777888887777776


Q ss_pred             C--ChhHHHHHHHHHHhCCCCCchHHHH-HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876           77 F--AFDKVQALLSDMSTQGIRPNTVTYN-TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME  153 (349)
Q Consensus        77 ~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  153 (349)
                      +  +++++...+.++.... +++...+. .....+...+.+++|+..++++.... +-+...|+.+..++...|++++|.
T Consensus       121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence            5  4789999999998874 33555554 44577778899999999999998876 456788888999999999988876


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      ..+....+.  .|+   .......+...+..+++...+........ ++...+..+...+...++.++|...+.+.....
T Consensus       199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            655544332  111   11233345566777788888877766653 355566667777788899999999999887654


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876          234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR  285 (349)
Q Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  285 (349)
                       +.+..++..+..++...|+.++|...++.+.+..+ .+...|+.+...+.-
T Consensus       273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP-~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSKFLL  322 (334)
T ss_dssp             -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHhH
Confidence             34567788889999999999999999999988753 245667766655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.7e-10  Score=86.25  Aligned_cols=196  Identities=8%  Similarity=-0.111  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG  179 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (349)
                      +|..+..+|.+.|++++|...|++.++.. +-+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            34444445555555555555555555443 2344455555555555555555555555555543 123444555555555


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh----
Q 018876          180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE----  255 (349)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----  255 (349)
                      ..|++++|...++...+..+. +......+...+.+.+..+.+..+........  ++...+. ++..+.......    
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME  192 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence            555555555555555544321 22222222223333333333333333333221  1111111 111111111111    


Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+...+....... +-...+|..+...|...|++++|...|+.....
T Consensus       193 ~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         193 RLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            1111111000000 012235566777778888888888888877765

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=1.2e-08  Score=79.59  Aligned_cols=197  Identities=12%  Similarity=0.027  Sum_probs=112.3

Q ss_pred             HHHHHhccCchHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CCCHHHHHH
Q 018876          104 LIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA----GI-QPSINTFNI  173 (349)
Q Consensus       104 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~  173 (349)
                      ....|...+++++|.+.|.+..+.    +-++ -..+|..+..+|.+.|++++|.+.+++..+.    |. .....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            355677778888888887776542    1111 2356777777788888888888887765542    11 011334445


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHhc----CCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-----H-HHH
Q 018876          174 LLDSYGK-AGHFEKMSAVMEYMQKY----HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-----C-VTL  241 (349)
Q Consensus       174 l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~  241 (349)
                      +...|.. .|++++|...+.+..+.    +.++ ...++..+...+...|++++|...++++........     . ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            5555533 57888888887766432    1111 134566677777788888888888877765421111     0 123


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCC-ch---HHHHHHHHHHHHc--cCChHHHHHHHHHHH
Q 018876          242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LD---TVFFNCLVDAYGR--LKCFAEMKGVLEVMQ  300 (349)
Q Consensus       242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~g~~~~a~~~~~~~~  300 (349)
                      ...+..+...|+++.|...++...+..+. ++   ......++.++-.  .+.+++|+..|+.+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            34444556677788887777777665321 11   2234445555544  234566666655443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.6e-07  Score=73.02  Aligned_cols=25  Identities=4%  Similarity=-0.049  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHh
Q 018876          241 LCSLVRAYGHAGKPEKLGSVLRFID  265 (349)
Q Consensus       241 ~~~l~~~~~~~~~~~~a~~~~~~~~  265 (349)
                      +..+...+...|++++|...++.+.
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~  185 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLI  185 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHH
Confidence            3444444445555555555444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.8e-07  Score=66.64  Aligned_cols=139  Identities=6%  Similarity=-0.012  Sum_probs=68.2

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876          142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ  221 (349)
Q Consensus       142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  221 (349)
                      .+...|+++.|++.|.++    .+|+..+|..+..++...|++++|...|++..+.++. +...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence            344555555555555432    1334445555555555555555555555555554432 44555555555555555555


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876          222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                      |...|++..... +.+...      .+...              .....+ ...++..+..++.+.|++++|.+.++...
T Consensus        89 A~~~~~kAl~~~-~~n~~~------~~~~~--------------~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          89 AIKDLKEALIQL-RGNQLI------DYKIL--------------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             HHHHHHHHHHTT-TTCSEE------ECGGG--------------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-ccCchH------HHHHh--------------hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            555555544321 111000      00000              000001 12344556667777777777777777776


Q ss_pred             hcCCCC
Q 018876          301 QRGCKP  306 (349)
Q Consensus       301 ~~~~~p  306 (349)
                      .....|
T Consensus       148 ~~~~~~  153 (192)
T d1hh8a_         148 SMKSEP  153 (192)
T ss_dssp             TTCCSG
T ss_pred             hcCCCc
Confidence            654443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.2e-07  Score=65.71  Aligned_cols=122  Identities=7%  Similarity=-0.027  Sum_probs=75.1

Q ss_pred             HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018876          107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK  186 (349)
Q Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (349)
                      .+...|+++.|++.|.++.    +|+..+|..+..+|...|++++|++.|++.++.. +.+...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            4455667777777666542    4455566667777777777777777777776664 3356666667777777777777


Q ss_pred             HHHHHHHHHhcCCC--------------C-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876          187 MSAVMEYMQKYHYS--------------W-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER  233 (349)
Q Consensus       187 a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  233 (349)
                      |...|++.......              + ...++..+..++.+.|++++|.+.+.......
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            77777666432110              0 12334455556666777777777666665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.8e-07  Score=60.03  Aligned_cols=25  Identities=24%  Similarity=0.151  Sum_probs=9.4

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHH
Q 018876          276 FNCLVDAYGRLKCFAEMKGVLEVMQ  300 (349)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~~~  300 (349)
                      |..+..++...|++++|...|+...
T Consensus        74 ~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          74 YSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3333333333333333333333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.1e-07  Score=63.16  Aligned_cols=92  Identities=9%  Similarity=-0.114  Sum_probs=64.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018876          210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF  289 (349)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  289 (349)
                      ...+.+.|++++|...|++..+.. +-+...|..+..++...|++++|...|+.+.+..+ -+..+|..++.+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCH
Confidence            445667777777777777776654 44566677777777777777777777777776553 2556777777777777777


Q ss_pred             HHHHHHHHHHHhcC
Q 018876          290 AEMKGVLEVMQQRG  303 (349)
Q Consensus       290 ~~a~~~~~~~~~~~  303 (349)
                      ++|...+++.....
T Consensus        95 ~eA~~~~~~a~~~~  108 (159)
T d1a17a_          95 RAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            77777777777663

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5e-07  Score=59.43  Aligned_cols=104  Identities=10%  Similarity=-0.073  Sum_probs=80.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018876          173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG  252 (349)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  252 (349)
                      .-...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..+....+.+ +.+...|..+..++...|
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence            3456677888888888888888877644 77788888888888888888888888888765 566778888888888888


Q ss_pred             ChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018876          253 KPEKLGSVLRFIDNSDIMLDTVFFNCL  279 (349)
Q Consensus       253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l  279 (349)
                      ++++|...++...+..+. ++..+..+
T Consensus        86 ~~~~A~~~~~~a~~~~p~-~~~~~~~l  111 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEAN-NPQLKEGL  111 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            888888888888876533 44444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=7.1e-07  Score=62.39  Aligned_cols=92  Identities=12%  Similarity=-0.090  Sum_probs=62.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP  254 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  254 (349)
                      ...|.+.|++++|...|.+..+..+. +...|..+..++...|++++|...|+.+++.. +-+..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            44566777777777777777666533 66667777777777777777777777776654 34456677777777777777


Q ss_pred             hhHHHHHHHHhhCC
Q 018876          255 EKLGSVLRFIDNSD  268 (349)
Q Consensus       255 ~~a~~~~~~~~~~~  268 (349)
                      ++|...++......
T Consensus        95 ~eA~~~~~~a~~~~  108 (159)
T d1a17a_          95 RAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            77777777766654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=2.2e-05  Score=59.61  Aligned_cols=224  Identities=8%  Similarity=-0.056  Sum_probs=110.0

Q ss_pred             chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCchHHH
Q 018876           26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTY  101 (349)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (349)
                      |+..+..|...+.+.+++++|++.|++..+.+    +..++..|...+..    ..+...+...+......+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            34566666667777788888888888776642    44555556666555    556777777777766654   22223


Q ss_pred             HHHHHHHh----ccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018876          102 NTLIDAYG----RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG----NSGQIDTMEKCYEKFQSAGIQPSINTFNI  173 (349)
Q Consensus       102 ~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (349)
                      ..+...+.    ...+.+.|...++.....|... .  ...+...+.    .......+...+......+   +...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~-a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE-G--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-H--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhhh-H--HHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence            33332222    2345666777776666554221 1  111111111    2333444555555544432   4444555


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          174 LLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       174 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      +...+..    ..+...+...++...+.+   +......+...+..    ..+++.|...|....+.|   ++..+..|.
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            5555543    233444555555444433   33333333333332    334555555555554443   122333333


Q ss_pred             HHHHh----cCChhhHHHHHHHHhhCC
Q 018876          246 RAYGH----AGKPEKLGSVLRFIDNSD  268 (349)
Q Consensus       246 ~~~~~----~~~~~~a~~~~~~~~~~~  268 (349)
                      ..|..    ..+.++|.+.|+...+.|
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            33332    224445555555554444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.9e-07  Score=68.21  Aligned_cols=100  Identities=9%  Similarity=-0.086  Sum_probs=87.9

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018876          201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV  280 (349)
Q Consensus       201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  280 (349)
                      |+...+......+.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|...++.+.+..+. +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            677778888899999999999999999988775 567888999999999999999999999999887543 677888999


Q ss_pred             HHHHccCChHHHHHHHHHHHhc
Q 018876          281 DAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+|.+.|++++|...|+.....
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=3.4e-07  Score=66.86  Aligned_cols=100  Identities=10%  Similarity=-0.103  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                      |+...+......+.+.|++++|+..|.+.....+. +...|..+..+|.+.|++++|+..++..++.. +-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            67777888899999999999999999999888644 88999999999999999999999999998754 34577899999


Q ss_pred             HHHHhcCChhhHHHHHHHHhhC
Q 018876          246 RAYGHAGKPEKLGSVLRFIDNS  267 (349)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~~  267 (349)
                      .++...|++++|...|+.+.+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988753

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.64  E-value=1.8e-05  Score=61.80  Aligned_cols=275  Identities=11%  Similarity=0.072  Sum_probs=145.2

Q ss_pred             CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876           25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL  104 (349)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  104 (349)
                      ||..-...+...|.+.|.++.|..+|..+..          |..++..+.+.++++.|.+++.+..      +..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence            4555556667777788888888888876543          4456677778888888777665432      55677777


Q ss_pred             HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876          105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF  184 (349)
Q Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (349)
                      ...+........+     .+.......++.....++..|...|.+++...+++..... -..+...++.++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence            7777766655433     2222233344555567778888888888888888776543 2456667777887777754 3


Q ss_pred             HHHHHHHHHHHhcCCCC--------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876          185 EKMSAVMEYMQKYHYSW--------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK  256 (349)
Q Consensus       185 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (349)
                      +...+.+..... ...+        ....|..++..|.+.|+++.|..+.-.   .  +++..-....+..+.+..+++.
T Consensus       149 ~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~  222 (336)
T d1b89a_         149 QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVEL  222 (336)
T ss_dssp             HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred             HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHH
Confidence            333333322211 0111        112234444444455555544433211   1  2222223334444555555555


Q ss_pred             HHHHHHHHhhCCCCchHH-----------HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchh
Q 018876          257 LGSVLRFIDNSDIMLDTV-----------FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN  325 (349)
Q Consensus       257 a~~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  325 (349)
                      ..++.....+..  |+..           --..++..+-+.++.......++.....|   +....+++...|...++++
T Consensus       223 ~~~~i~~yL~~~--p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~  297 (336)
T d1b89a_         223 YYRAIQFYLEFK--PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQ  297 (336)
T ss_dssp             HHHHHHHHHHHC--GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcC--HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhH
Confidence            444444433321  2110           01235555566677777777776666544   4568889999999999876


Q ss_pred             hhHHHHHH
Q 018876          326 HAKEFQDL  333 (349)
Q Consensus       326 ~a~~~~~~  333 (349)
                      .-+...+.
T Consensus       298 ~l~~~i~~  305 (336)
T d1b89a_         298 ALRTSIDA  305 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.61  E-value=4.4e-05  Score=57.90  Aligned_cols=226  Identities=11%  Similarity=-0.034  Sum_probs=140.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHH
Q 018876           62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMN  137 (349)
Q Consensus        62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  137 (349)
                      |+..+..|...+.+.+++++|+++|++..+.|   +...+..|...|..    ..+...|...+......+ .|.  ...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~--a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSN--GCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHH--HHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccc--hhh
Confidence            45566677777888899999999999988876   45555556666654    557888888888877665 222  222


Q ss_pred             HHHHHHH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 018876          138 CTLRAFG----NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIV  209 (349)
Q Consensus       138 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  209 (349)
                      .+...+.    ...+.+.|...++...+.|..   .....+...+..    ......+...+......+   +...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence            3333322    355678888888888776532   222223333332    334666666666655543   55666667


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          210 IDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       210 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      ...+..    ..+...+...++...+.|   +......+...+..    ..+++.|...|....+.|   ++..+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            666664    345566666777666544   34444455544544    456777888888777765   3445555666


Q ss_pred             HHHc----cCChHHHHHHHHHHHhcCCC
Q 018876          282 AYGR----LKCFAEMKGVLEVMQQRGCK  305 (349)
Q Consensus       282 ~~~~----~g~~~~a~~~~~~~~~~~~~  305 (349)
                      .|.+    ..+.++|.+.|++..+.|..
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            6654    33677788888877777643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.3e-07  Score=59.21  Aligned_cols=94  Identities=15%  Similarity=0.038  Sum_probs=60.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCch-HHHHHHHHHHH
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP---EKLGSVLRFIDNSDIMLD-TVFFNCLVDAY  283 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~li~~~  283 (349)
                      .++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++.   ++|+.+++.+...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45556666677777777777776655 45566666677766654443   357777777666544333 23566677777


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 018876          284 GRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       284 ~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+.|++++|.+.|+++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            7777777777777777765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.51  E-value=7.1e-07  Score=58.14  Aligned_cols=92  Identities=7%  Similarity=-0.146  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 018876           30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG  109 (349)
Q Consensus        30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  109 (349)
                      +..+...+.+.|++++|+..|++.....  +-+..+|..+..++.+.+++++|+..+++..+.. +-+...+..+..+|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~   95 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   95 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence            3445566777788888888888777653  3467777777777888888888888888777763 335667777777777


Q ss_pred             ccCchHHHHHHHHHH
Q 018876          110 RAKMFAEMELTLVKM  124 (349)
Q Consensus       110 ~~~~~~~a~~~~~~~  124 (349)
                      ..|++++|.+.+++.
T Consensus        96 ~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          96 NEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            778888887777765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.50  E-value=9.4e-07  Score=57.54  Aligned_cols=89  Identities=7%  Similarity=-0.162  Sum_probs=51.0

Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876          244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM  323 (349)
Q Consensus       244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  323 (349)
                      +...+.+.|++++|...++.+....+. ++..|..+..++.+.|++++|...|+...+.... +...|..+..+|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence            344455566666666666665554432 4555666666666666666666666666555321 45555666666666666


Q ss_pred             hhhhHHHHHHH
Q 018876          324 KNHAKEFQDLV  334 (349)
Q Consensus       324 ~~~a~~~~~~~  334 (349)
                      .++|.+.++++
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.1e-07  Score=78.14  Aligned_cols=228  Identities=11%  Similarity=0.023  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHhcCCCCc-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 018876           10 KAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLS   87 (349)
Q Consensus        10 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~   87 (349)
                      +|.+.|++..+.  .|+ ..++..+..++...|++++|   |+++...   .|+. ..++.. ..+. ...+..+.+.++
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVE-QDLW-NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHH-HHHH-HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHH-HHHH-HHHHHHHHHHHH
Confidence            688888888765  343 55677777777777888766   5665543   2322 111111 1111 122455666777


Q ss_pred             HHHhCCCCCchHHHHHHHHH--HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876           88 DMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ  165 (349)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  165 (349)
                      ...+....++..-....+..  ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......  
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            66655433333322222212  223455566665555444332 3455667777788888899999888777665432  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876          166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV  245 (349)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  245 (349)
                       ...++..+...+...|++++|...|.+..+..+. +...|+.+...+...|+..+|...|.+..... +|...++..|.
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~  227 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ  227 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence             2356777888999999999999999999988644 78899999999999999999999999998766 57778888888


Q ss_pred             HHHHhcCC
Q 018876          246 RAYGHAGK  253 (349)
Q Consensus       246 ~~~~~~~~  253 (349)
                      ..+.+..+
T Consensus       228 ~~~~~~~~  235 (497)
T d1ya0a1         228 KALSKALE  235 (497)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhh
Confidence            87765443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3e-06  Score=55.84  Aligned_cols=94  Identities=7%  Similarity=-0.034  Sum_probs=47.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC---chHHHHHHHHHHhccCCCcc-hhhHHHHHHHH
Q 018876           68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK---MFAEMELTLVKMLSEDCEPD-VWTMNCTLRAF  143 (349)
Q Consensus        68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  143 (349)
                      .+++.+...+++++|++.|++....+ +.+..++..+..++.+.+   ++++|+.+++++......|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34445555555555555555555543 234455555555555433   33345555555554432222 12444455555


Q ss_pred             HccCCHHHHHHHHHHHHhc
Q 018876          144 GNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus       144 ~~~~~~~~a~~~~~~~~~~  162 (349)
                      .+.|++++|.+.|+++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            5555555555555555554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.5e-05  Score=55.98  Aligned_cols=127  Identities=7%  Similarity=-0.125  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018876          170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG  249 (349)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  249 (349)
                      .+......+.+.|++++|+..|.+..........              ....-......+       -..+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence            3444555677777888888777776654211000              000101111111       1235677888888


Q ss_pred             hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS  319 (349)
Q Consensus       250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  319 (349)
                      +.|++++|...++..+..++ .++..|..+..+|...|++++|...|+...+.... |......+-.+..
T Consensus        74 k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~  141 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ  141 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            99999999999999888764 37788888999999999999999999999887422 4444444444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.7e-05  Score=54.71  Aligned_cols=127  Identities=7%  Similarity=-0.169  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018876          134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF  213 (349)
Q Consensus       134 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (349)
                      ..+......+.+.|++++|...|.+..+.-.....              ....-......+       -..+|+.+..+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y   72 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence            44555667889999999999999998765211000              000000001111       123466677777


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876          214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY  283 (349)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  283 (349)
                      .+.|++++|+..++..+... +.+...+..+..++...|++++|...|+.+.+..+. +..+...+..+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~  140 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ  140 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            88888888888888877664 446777778888888888888888888888776532 444444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.00038  Score=54.09  Aligned_cols=258  Identities=15%  Similarity=0.153  Sum_probs=156.5

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876            3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV   82 (349)
Q Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   82 (349)
                      -+.|.++.|..+|..+.         -|..++..+.+.++++.|.+.+.+.       -+..+|..+...+.+......+
T Consensus        25 ~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          25 YDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             ----CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHHhCcHHHHH
Confidence            36677777777776442         3777888999999999998887654       2567888888888887766554


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876           83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA  162 (349)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  162 (349)
                      .     +.......++.....++..|-..|.+++...+++...... ..+...++.++..|++.+. ++..+.+..... 
T Consensus        89 ~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~-  160 (336)
T d1b89a_          89 Q-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWS-  160 (336)
T ss_dssp             H-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHST-
T ss_pred             H-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhccc-
Confidence            2     2233344466666788999999999999999999877543 5566778889999988653 333333333211 


Q ss_pred             CCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018876          163 GIQPS--------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI  234 (349)
Q Consensus       163 ~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  234 (349)
                      ...+.        ...|.-++-.|.+.|+++.|..++-.   .  .++..-....+..+.+..+.+...++.....+.  
T Consensus       161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--  233 (336)
T d1b89a_         161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--  233 (336)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--
Confidence            11111        11134455556666666665544321   1  122333344455556666666555555544432  


Q ss_pred             CCcHHHHHH-------------HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018876          235 KPSCVTLCS-------------LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL  296 (349)
Q Consensus       235 ~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  296 (349)
                      .|  ...+.             ++..+.+.+++.....+++...+.+   +..+.+++...|...++++.-.+..
T Consensus       234 ~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         234 KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            22  22233             3444455556666666666655544   3468889999999999876544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.1e-05  Score=53.62  Aligned_cols=94  Identities=5%  Similarity=-0.034  Sum_probs=50.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-----ch-HHHHHHHHH
Q 018876          208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-----LD-TVFFNCLVD  281 (349)
Q Consensus       208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-~~~~~~li~  281 (349)
                      .+...+...|++++|+..|.+.++.+ +.+...+..+..+|...|++++|...++.+.+....     +. ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34444555566666666665555543 334555555556666666666666665555432110     00 234555566


Q ss_pred             HHHccCChHHHHHHHHHHHhc
Q 018876          282 AYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       282 ~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .+...+++++|...|+.....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhc
Confidence            666666666666666665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.6e-07  Score=74.35  Aligned_cols=227  Identities=11%  Similarity=-0.044  Sum_probs=121.4

Q ss_pred             HHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCchHHHHHHHH
Q 018876           45 KAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLV  122 (349)
Q Consensus        45 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~  122 (349)
                      +|.+.|++..+.   .|+ ...+..+..++...+++++|   +++++..  .|+. ..++..-..  -...+..+.+.++
T Consensus         4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~L--w~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDL--WNHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHH--HHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHH--HHHHHHHHHHHHH
Confidence            566777777653   222 23344455556666666655   6666554  2221 111111111  1122455666777


Q ss_pred             HHhccCCCcchhhHHHHHHH--HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018876          123 KMLSEDCEPDVWTMNCTLRA--FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS  200 (349)
Q Consensus       123 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  200 (349)
                      ...+....++.......+..  ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......  
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            76655433333322222211  122344455554444333322 3355667777788889999999988877665432  


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018876          201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV  280 (349)
Q Consensus       201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  280 (349)
                       ...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+...... |-+.++..|.
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~  227 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQ  227 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHH
Confidence             24567788899999999999999999998765 55668999999999999999999999999988764 6777888888


Q ss_pred             HHHHccC
Q 018876          281 DAYGRLK  287 (349)
Q Consensus       281 ~~~~~~g  287 (349)
                      ..+.+..
T Consensus       228 ~~~~~~~  234 (497)
T d1ya0a1         228 KALSKAL  234 (497)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            8776543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.5e-05  Score=51.16  Aligned_cols=94  Identities=12%  Similarity=0.080  Sum_probs=54.1

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-c-----hHHHHHHH
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-T-----IVTYNIVI  210 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l~  210 (349)
                      ..+...+...|++++|+..|.+.++.. +.+...+..+..+|.+.|++++|...++++.+..... .     ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            344555666666666666666666654 3356666666666666666666666666655432110 0     13444555


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 018876          211 DAFGRAGDLKQMEYLFRLMRS  231 (349)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~  231 (349)
                      ..+...+++++|...|.....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            555566666666666665544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.16  E-value=3.7e-05  Score=53.91  Aligned_cols=79  Identities=10%  Similarity=-0.031  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876          237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR  316 (349)
Q Consensus       237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  316 (349)
                      ....+..+..++.+.|++++|+..+..+.+..+ .++..|..+..+|...|++++|...|+...+.... +......+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            345667778888899999999999999988764 47788888999999999999999999999887422 4444444444


Q ss_pred             H
Q 018876          317 A  317 (349)
Q Consensus       317 ~  317 (349)
                      +
T Consensus       154 ~  154 (169)
T d1ihga1         154 V  154 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.16  E-value=7e-05  Score=51.42  Aligned_cols=64  Identities=14%  Similarity=-0.079  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876          239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG  303 (349)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  303 (349)
                      .++..+..+|.+.|++++|+..++.+.+.++ .+..+|..+..++...|++++|...|+...+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4667788888899999999999988887764 377888889999999999999999999888874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.14  E-value=5.4e-05  Score=53.02  Aligned_cols=82  Identities=6%  Similarity=-0.102  Sum_probs=62.5

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876          202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD  281 (349)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  281 (349)
                      ....|..+..++.+.|++++|+..+..+++.. +.+...|..+..++...|+++.|...|+.+.+..+. +......+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45566777888888999999999999988765 556788888899999999999999999988886543 5555555544


Q ss_pred             HHHc
Q 018876          282 AYGR  285 (349)
Q Consensus       282 ~~~~  285 (349)
                      +..+
T Consensus       154 ~~~~  157 (169)
T d1ihga1         154 VKQK  157 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.13  E-value=7.3e-05  Score=51.33  Aligned_cols=73  Identities=12%  Similarity=-0.081  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876          204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC  278 (349)
Q Consensus       204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  278 (349)
                      .+|+.+..+|.+.|++++|+..+....+.. +.+..+|..+..++...|++++|...|+...+..+. +..+...
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~  140 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            456667777888888888888888877665 456778888888888888888888888888776532 3444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.09  E-value=0.00021  Score=49.81  Aligned_cols=62  Identities=15%  Similarity=-0.018  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      +|+.+..++.+.|++++|+..++.+....+ .+...|..+..++...|++++|...|+.+...
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344555566666666666666666665543 35556666666666666666666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=8.4e-05  Score=52.41  Aligned_cols=123  Identities=13%  Similarity=0.094  Sum_probs=85.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876          175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP  254 (349)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  254 (349)
                      .......|++++|...|.........+ ..         .......-+...-..+..    .....+..+..++...|++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence            346678889999999888887642111 00         000110111111111111    1235677788999999999


Q ss_pred             hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh-----cCCCCCHHHHH
Q 018876          255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTYR  312 (349)
Q Consensus       255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~  312 (349)
                      ++|...++.+....+ -+...|..++.+|.+.|+..+|++.|+++.+     .|+.|...+-.
T Consensus        84 ~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~  145 (179)
T d2ff4a2          84 SAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  145 (179)
T ss_dssp             HHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             hHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            999999999988765 4889999999999999999999999999854     59999876643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.99  E-value=0.00016  Score=50.53  Aligned_cols=127  Identities=9%  Similarity=0.009  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 018876           28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA  107 (349)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  107 (349)
                      ..+......+.+.|++++|+..|+.....-...+..               ..........+       ...+|+.+..+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~---------------~~~~~~~~~~~-------~~~~~~Nla~~   73 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL---------------SEKESKASESF-------LLAAFLNLAMC   73 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC---------------CHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc---------------chhhhhhcchh-------HHHHHHhHHHH
Confidence            345556667778888888888887755321000100               00000000000       12345556666


Q ss_pred             HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876          108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY  178 (349)
Q Consensus       108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (349)
                      |.+.|++++|+..+++.+... +.+...|..+..++...|++++|...|.++.+.. +.+......+-...
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred             HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            667777777777777766654 4456666666677777777777777777766653 23444444444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=0.00015  Score=51.05  Aligned_cols=59  Identities=10%  Similarity=-0.062  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876          100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF  159 (349)
Q Consensus       100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  159 (349)
                      .+..+..++...|++++|+..++++.... +-+...|..++.++...|+..+|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            33444444455555555555555544443 334444555555555555555555555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.98  E-value=1.7e-05  Score=59.88  Aligned_cols=121  Identities=6%  Similarity=-0.087  Sum_probs=54.3

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018876          180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS  259 (349)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  259 (349)
                      +.|++++|+..+++..+..+. +...+..+...++..|++++|...++...+.. +-+...+..+...+...+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHH
Confidence            445566666666555555433 55555556666666666666666665555432 1122222222222222222111111


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      -.......+.+++...+......+...|+.++|...++++.+.
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            1000001111122333333445556666666666666666554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=1.3e-05  Score=54.59  Aligned_cols=71  Identities=6%  Similarity=-0.070  Sum_probs=48.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcC----------CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRS----------GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC   73 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   73 (349)
                      +.+.+++|++.|+...+.. |.++.++..+..++...          +.+++|+..|++..+..  |.+..+|..+..++
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHH
Confidence            4566788888888888874 56777787777777643          33466777777777653  45566777776666


Q ss_pred             HhcC
Q 018876           74 LKAF   77 (349)
Q Consensus        74 ~~~~   77 (349)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.92  E-value=2.6e-05  Score=58.87  Aligned_cols=54  Identities=17%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ   92 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   92 (349)
                      ..+.|++++|+..+++..+..  |.|...+..+...++..|++++|...++...+.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345566777777776666553  455666666677777777777777777666655

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.67  E-value=0.00023  Score=48.15  Aligned_cols=32  Identities=3%  Similarity=-0.118  Sum_probs=13.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876          147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG  179 (349)
Q Consensus       147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (349)
                      +.+++|.+.|+...+.. |.+..++..+..++.
T Consensus        11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~   42 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLL   42 (145)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHH
Confidence            34444444444444442 223444444444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.57  E-value=0.0011  Score=45.41  Aligned_cols=53  Identities=11%  Similarity=-0.059  Sum_probs=25.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCC-CCc----------HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876          212 AFGRAGDLKQMEYLFRLMRSERI-KPS----------CVTLCSLVRAYGHAGKPEKLGSVLRFI  264 (349)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~  264 (349)
                      .+...|++++|+..|++.++... .|+          ...|+.+..+|...|++++|...++..
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            34455666666666666543210 011          133444455555555555555554444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.56  E-value=0.00058  Score=46.80  Aligned_cols=98  Identities=13%  Similarity=0.026  Sum_probs=50.0

Q ss_pred             hhHHHH--HHHHHcCCChhHHHHHHHHhhcCCCCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 018876           28 QSFTAL--LSAYGRSGLFDKAFSLLEHMKNTPDCQPD----------VNTYSILIKSCLKAFAFDKVQALLSDMSTQ---   92 (349)
Q Consensus        28 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---   92 (349)
                      .+|..+  ...+...|++++|++.|++..+.....|+          ...|+.+..++...|++++|...+++..+.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            345554  33455667777777777776643211121          245556666666666666666666555432   


Q ss_pred             --CCCCc-----hHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018876           93 --GIRPN-----TVTYNTLIDAYGRAKMFAEMELTLVKML  125 (349)
Q Consensus        93 --~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  125 (349)
                        ...++     ...++.+..+|...|++++|...|++..
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              01111     1123344445555555555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0031  Score=38.74  Aligned_cols=62  Identities=8%  Similarity=-0.037  Sum_probs=30.2

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876          137 NCTLRAFGNSGQIDTMEKCYEKFQSAG-----IQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH  198 (349)
Q Consensus       137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (349)
                      -.+...+.+.|++++|...|++..+..     ..+ ...++..+..++.+.|++++|...++++.+..
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            344445555555555555555543321     011 13345555555555555555555555555543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.12  E-value=0.012  Score=37.36  Aligned_cols=68  Identities=12%  Similarity=0.014  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876           97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ  165 (349)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  165 (349)
                      +...++..++.+...|.-+...++++.+.+.+ ++++...-.+..+|.+.|+..++-+++.+..+.|.+
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            44566777788888888888888888876654 666777777888888888888888888888887754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0043  Score=38.06  Aligned_cols=64  Identities=13%  Similarity=0.002  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876          169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-----SW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE  232 (349)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  232 (349)
                      ..+..+...+.+.|+++.|...|++..+...     .+ ...+++.+..++.+.|++++|...++++.+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3344555666666666666666665543211     01 1345555666666666666666666666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.99  E-value=0.019  Score=37.56  Aligned_cols=78  Identities=14%  Similarity=0.036  Sum_probs=36.7

Q ss_pred             ChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 018876            7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKV   82 (349)
Q Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a   82 (349)
                      ++++|++.|++..+.|   +......|..  ....+.++|++++++..+.+    +......|...+..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHH
Confidence            4566666666666654   2233333322  22344555555555554432    33333333333332    2344555


Q ss_pred             HHHHHHHHhCC
Q 018876           83 QALLSDMSTQG   93 (349)
Q Consensus        83 ~~~~~~~~~~~   93 (349)
                      .++|++..+.|
T Consensus        79 ~~~~~~aa~~g   89 (133)
T d1klxa_          79 AQYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHhhhhccC
Confidence            55555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.38  E-value=0.058  Score=35.11  Aligned_cols=14  Identities=7%  Similarity=0.024  Sum_probs=5.6

Q ss_pred             hhHHHHHHHHHHhC
Q 018876           79 FDKVQALLSDMSTQ   92 (349)
Q Consensus        79 ~~~a~~~~~~~~~~   92 (349)
                      +++|..+|.+..+.
T Consensus         9 ~~~A~~~~~kaa~~   22 (133)
T d1klxa_           9 LKKAIQYYVKACEL   22 (133)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            33444444443333

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.11  E-value=0.074  Score=33.67  Aligned_cols=141  Identities=11%  Similarity=0.123  Sum_probs=95.9

Q ss_pred             HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH
Q 018876           37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE  116 (349)
Q Consensus        37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  116 (349)
                      +.-.|..++..++..+....    .+..-||-++.-....-+-+...+.++..-+. +  |.          ..+++...
T Consensus        12 ~ildG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHH
Confidence            45567778888888777653    35556666666666666777777666665432 1  11          11222222


Q ss_pred             HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876          117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK  196 (349)
Q Consensus       117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (349)
                      ...-+-.+     ..+...+...+......|.-++..+++..+.+.+ .+++...-.+..+|.+.|...++.+++.+.-+
T Consensus        75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            22222222     2234456777788889999999999999987764 77888888999999999999999999999988


Q ss_pred             cCCC
Q 018876          197 YHYS  200 (349)
Q Consensus       197 ~~~~  200 (349)
                      .|.+
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            8864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.24  Score=31.37  Aligned_cols=68  Identities=7%  Similarity=-0.047  Sum_probs=45.5

Q ss_pred             CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      .|+..+-.....++.++.+   .++++.+++.+.+.+..-....+..|..+|.+.|++++|.+.++.+.+.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3555566666667776654   4567777777766542212345566777788888888888888888876

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.79  Score=36.72  Aligned_cols=307  Identities=9%  Similarity=-0.021  Sum_probs=137.0

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876            4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG--RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK   81 (349)
Q Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (349)
                      +.|+...+.++...+.+.   | ...|-..-..-.  .....++...+++.   .++.+.....-...+..+.+.++++.
T Consensus        18 ~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~~l~~L~~~~~w~~   90 (450)
T d1qsaa1          18 DNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRG   90 (450)
T ss_dssp             HTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhccCHHH
Confidence            355666666666555322   2 223332222221  23344444444433   21212222233444666777787766


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH--HHHHHHHH
Q 018876           82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT--MEKCYEKF  159 (349)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~  159 (349)
                      ....+    . ..+.+...-.....+....|+..+|...+..+-..| ......+..+...+...|....  ..+-+..+
T Consensus        91 ~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~  164 (450)
T d1qsaa1          91 LLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLA  164 (450)
T ss_dssp             HHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            54433    1 224455555567777888888888888777666554 3333344555555544443321  11222222


Q ss_pred             HhcC-----------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh--cCChHHHHHH
Q 018876          160 QSAG-----------IQPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR--AGDLKQMEYL  225 (349)
Q Consensus       160 ~~~~-----------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~  225 (349)
                      ...|           ++++ .......+.....   ...+...   ....  .++......+..++.+  ..+.+.+..+
T Consensus       165 l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~---~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~  236 (450)
T d1qsaa1         165 MKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTF---ARTT--GATDFTRQMAAVAFASVARQDAENARLM  236 (450)
T ss_dssp             HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHH---HHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHH---HhcC--CCChhhhHHHHHHHHHHhccChhHHHHH
Confidence            2221           1111 1111111111111   1111111   1111  1122222222233222  2456666666


Q ss_pred             HHHHHhCCCCCcHHHHHHHH----HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876          226 FRLMRSERIKPSCVTLCSLV----RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ  301 (349)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  301 (349)
                      +........ .+..-+..+-    ......+..+.+...+........  +.......+......+++..+...+..|..
T Consensus       237 l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~  313 (450)
T d1qsaa1         237 IPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPM  313 (450)
T ss_dssp             HHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred             HHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCc
Confidence            666544321 1222222221    222234445566666655554432  333333344445566777777777766643


Q ss_pred             cCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876          302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE  335 (349)
Q Consensus       302 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  335 (349)
                      .. .-...-.--+.+++...|+.+.|..++..+.
T Consensus       314 ~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         314 EA-KEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             TG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            21 1123333445566777777777777776654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.21  Score=31.70  Aligned_cols=70  Identities=7%  Similarity=-0.131  Sum_probs=52.5

Q ss_pred             chHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018876          271 LDTVFFNCLVDAYGRLK---CFAEMKGVLEVMQQRGCKPDK-VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC  341 (349)
Q Consensus       271 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  341 (349)
                      ++..+--....++.+..   +.++++.++++..+.+. .+. ..+..+.-+|.+.|+++.|.++++.+.++++..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            45555555666666554   56789999999987632 233 566778889999999999999999999887654

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.44  E-value=0.4  Score=28.61  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876          256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR  302 (349)
Q Consensus       256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  302 (349)
                      ++.+-++.+......|++.+..+.+++|-+.+++..|.++|+..+.+
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444444555555555555555555555555555555555555443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.66  E-value=0.54  Score=28.02  Aligned_cols=50  Identities=12%  Similarity=0.058  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876          288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM  337 (349)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  337 (349)
                      +.-++.+-+..+....+.|++....+.+++|.+.+++..|.++++-++..
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            55567788888888899999999999999999999999999999987654