Citrus Sinensis ID: 018877

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSADMFEDASA
ccHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHccccccEEEEEccccccccHHHHHHHHcccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEcccHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEccEEEEEccEEccccHHHHHHHHHHcccEEEEEEEccccccccccEEccccccccccEEEEEEEEccccccccEEEEEcccccccccccEEEEEccccccccccccEEccccccccccccccccHHHHccc
cHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHccccHHHHHHHHcccccccccccccccccccccccccccEEHHHHccccHHHHcccEccccEcHHHHHHHHHHHHHHHHcccccccccEcHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccHHHHcEcEEEEEEccccHHHHHHHHHHHccEEEEEEEEHHHHcccccEEccccccEEEEEEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccHHHcccccEEccEccccccccccccccHHHHcc
MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVnenpkagwkaarnpqfsnytvgqfkhllgvkptpkglllgvpvkthdkslklpksfdarsawpqcstisrildqghcgscwafgaVEALSDRFCIHFGMNLSLSVNDLLACCGflcgdgcdggypisaWRYFVHhgvvteecdpyfdstgcshpgcepayptpkcvrkcvkknqlwrnskhysisayrinsdpeDIMAEIykngpvevSFTVYEDFAHYKSGVykhitgdvmggHAVKligwgtsddgedYWILANQwnrswgadgyfkikrgsnecgieedvvaglpssknlVKEITsadmfedasa
MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKlpksfdarsawPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKknqlwrnskhysisayrinSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVvaglpssknlvkeitsadmfedasa
MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNdllaccgflcgdgcdggYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSADMFEDASA
*VIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGL*********************
*VIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLL*********************LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNL***************
MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSADMFEDASA
MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVK*****************SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSS******************
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVIYIIRSNWMWCCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSADMFEDASA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q4R5M2339 Cathepsin B OS=Macaca fas N/A no 0.902 0.929 0.441 5e-77
Q5R6D1339 Cathepsin B OS=Pongo abel yes no 0.893 0.920 0.446 2e-76
P07858339 Cathepsin B OS=Homo sapie yes no 0.893 0.920 0.443 8e-76
P00787339 Cathepsin B OS=Rattus nor yes no 0.845 0.870 0.455 2e-73
A1E295335 Cathepsin B OS=Sus scrofa yes no 0.893 0.931 0.426 1e-70
P10605339 Cathepsin B OS=Mus muscul yes no 0.830 0.855 0.443 2e-70
P25792340 Cathepsin B-like cysteine N/A no 0.888 0.911 0.430 7e-69
P43233340 Cathepsin B OS=Gallus gal yes no 0.813 0.835 0.438 9e-68
P43157342 Cathepsin B-like cysteine N/A no 0.888 0.906 0.414 1e-67
P43510379 Cathepsin B-like cysteine yes no 0.891 0.820 0.422 3e-67
>sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1 Back     alignment and function desciption
 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/351 (44%), Positives = 211/351 (60%), Gaps = 36/351 (10%)

Query: 10  WMW---CCLQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFK 66
           W+W   CCL    +   ++ +   H L D ++  VN+     W+A  N  F N  V   K
Sbjct: 3   WLWASLCCLLALGD---ARSRPSFHPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLK 56

Query: 67  HLLGV---KPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWA 123
            L G     P P   ++        + LKLP+SFDAR  WPQC TI  I DQG CGSCWA
Sbjct: 57  RLCGTFLGGPKPPQRVM------FTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWA 110

Query: 124 FGAVEALSDRFCIHFGMNLSLSVN--DLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTE 181
           FGAVEA+SDR CIH   ++S+ V+  DLL CCG +CGDGC+GGYP  AW ++   G+V+ 
Sbjct: 111 FGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSG 170

Query: 182 E-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISA 227
                   C PY     C H      P C     TPKC + C    +  ++  KHY  ++
Sbjct: 171 GLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNS 229

Query: 228 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD 287
           Y +++  +DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  +
Sbjct: 230 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-E 288

Query: 288 DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 338
           +G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct: 289 NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339
Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.
Macaca fascicularis (taxid: 9541)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1
>sp|Q5R6D1|CATB_PONAB Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1 Back     alignment and function description
>sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3 Back     alignment and function description
>sp|P00787|CATB_RAT Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2 Back     alignment and function description
>sp|A1E295|CATB_PIG Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1 Back     alignment and function description
>sp|P10605|CATB_MOUSE Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2 Back     alignment and function description
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1 Back     alignment and function description
>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1 Back     alignment and function description
>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1 Back     alignment and function description
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
224064400357 predicted protein [Populus trichocarpa] 0.957 0.935 0.799 1e-161
255548165376 cathepsin B, putative [Ricinus communis] 0.934 0.867 0.771 1e-160
449489527349 PREDICTED: cathepsin B-like [Cucumis sat 0.922 0.922 0.795 1e-158
449446774348 PREDICTED: cathepsin B-like [Cucumis sat 0.922 0.925 0.795 1e-158
356505709357 PREDICTED: cathepsin B-like [Glycine max 0.928 0.907 0.782 1e-156
217072748359 unknown [Medicago truncatula] gi|3885054 0.919 0.894 0.785 1e-156
357511629357 Cathepsin B [Medicago truncatula] gi|872 0.919 0.899 0.785 1e-156
224128101339 predicted protein [Populus trichocarpa] 0.971 1.0 0.761 1e-155
217073630359 unknown [Medicago truncatula] 0.919 0.894 0.778 1e-155
225437812358 PREDICTED: cathepsin B-like isoform 1 [V 0.896 0.874 0.805 1e-154
>gi|224064400|ref|XP_002301457.1| predicted protein [Populus trichocarpa] gi|222843183|gb|EEE80730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/334 (79%), Positives = 294/334 (88%)

Query: 16  QTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTP 75
           Q  A   VS LKL+S ILQDSI+K+VN NPKAGWKA  N  FSNYTV QFK+LLGVKPTP
Sbjct: 24  QVIAVEPVSDLKLNSRILQDSILKKVNGNPKAGWKATMNHHFSNYTVAQFKYLLGVKPTP 83

Query: 76  KGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFC 135
           K  L G+PV +H KSL+LP+ FDAR+AWPQCSTI +ILDQGHCGSCWAFGAVE+LSDRFC
Sbjct: 84  KEELRGIPVISHPKSLRLPEEFDARTAWPQCSTIGKILDQGHCGSCWAFGAVESLSDRFC 143

Query: 136 IHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHP 195
           IH+GMN+SLSVNDLLACCGFLCG GC+GGYPISAWRYFVHHGVVTEECDPYFD  GCSHP
Sbjct: 144 IHYGMNISLSVNDLLACCGFLCGSGCNGGYPISAWRYFVHHGVVTEECDPYFDDIGCSHP 203

Query: 196 GCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 255
           GCEP YPTPKC RKCV KNQLW+ SKHY +  YRI+SDPE IMAEIYKNGPVEV+FTVYE
Sbjct: 204 GCEPGYPTPKCARKCVNKNQLWKKSKHYGVKPYRIDSDPESIMAEIYKNGPVEVAFTVYE 263

Query: 256 DFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS 315
           DFAHYKSGVYKHITG +MGGHAVKLIGWGTS+DGE YW+LANQWNR WG DGYFKI+RG+
Sbjct: 264 DFAHYKSGVYKHITGGMMGGHAVKLIGWGTSEDGEAYWLLANQWNRGWGDDGYFKIRRGT 323

Query: 316 NECGIEEDVVAGLPSSKNLVKEITSADMFEDASA 349
           NECGIE DVVAGLPS++NLV+E+ S D  EDASA
Sbjct: 324 NECGIEGDVVAGLPSTRNLVREVVSVDAREDASA 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548165|ref|XP_002515139.1| cathepsin B, putative [Ricinus communis] gi|223545619|gb|EEF47123.1| cathepsin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449489527|ref|XP_004158338.1| PREDICTED: cathepsin B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446774|ref|XP_004141146.1| PREDICTED: cathepsin B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356505709|ref|XP_003521632.1| PREDICTED: cathepsin B-like [Glycine max] Back     alignment and taxonomy information
>gi|217072748|gb|ACJ84734.1| unknown [Medicago truncatula] gi|388505480|gb|AFK40806.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357511629|ref|XP_003626103.1| Cathepsin B [Medicago truncatula] gi|87240982|gb|ABD32840.1| Peptidase C1A, papain; Somatotropin hormone; Peptidase C1, propeptide [Medicago truncatula] gi|355501118|gb|AES82321.1| Cathepsin B [Medicago truncatula] Back     alignment and taxonomy information
>gi|224128101|ref|XP_002320244.1| predicted protein [Populus trichocarpa] gi|222861017|gb|EEE98559.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217073630|gb|ACJ85175.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225437812|ref|XP_002281936.1| PREDICTED: cathepsin B-like isoform 1 [Vitis vinifera] gi|359480250|ref|XP_003632421.1| PREDICTED: cathepsin B-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:505006093362 AT1G02305 [Arabidopsis thalian 0.939 0.906 0.731 7.4e-137
TAIR|locus:2133402359 AT4G01610 [Arabidopsis thalian 0.934 0.908 0.708 1e-132
TAIR|locus:2204873379 AT1G02300 [Arabidopsis thalian 0.650 0.598 0.731 1.5e-127
UNIPROTKB|P07858339 CTSB "Cathepsin B" [Homo sapie 0.896 0.923 0.412 1.1e-66
UNIPROTKB|E2R6Q7339 CTSB "Uncharacterized protein" 0.911 0.938 0.404 3.7e-64
ZFIN|ZDB-GENE-070323-1326 ctsbb "capthepsin B, b" [Danio 0.882 0.944 0.414 3.7e-64
RGD|621509339 Ctsb "cathepsin B" [Rattus nor 0.848 0.873 0.419 7.6e-64
UNIPROTKB|Q6IN22339 Ctsb "Cathepsin B" [Rattus nor 0.836 0.861 0.421 9.7e-64
MGI|MGI:88561339 Ctsb "cathepsin B" [Mus muscul 0.830 0.855 0.420 1e-61
UNIPROTKB|A1E295335 CTSB "Cathepsin B" [Sus scrofa 0.885 0.922 0.402 2.1e-61
TAIR|locus:505006093 AT1G02305 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
 Identities = 240/328 (73%), Positives = 271/328 (82%)

Query:    15 LQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPT 74
             LQ  A   +SK KL S ILQ+ I+KEVNENP AGWKA+ N +F+N TV +FK LLGVKPT
Sbjct:    28 LQGIAAENLSKQKLTSWILQNEIVKEVNENPNAGWKASFNDRFANATVAEFKRLLGVKPT 87

Query:    75 PKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRF 134
             PK   LGVP+ +HD SLKLPK FDAR+AW QC++I RILDQGHCGSCWAFGAVE+LSDRF
Sbjct:    88 PKTEFLGVPIVSHDISLKLPKEFDARTAWSQCTSIGRILDQGHCGSCWAFGAVESLSDRF 147

Query:   135 CIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSH 194
             CI + MN+SLSVN                 YPI+AWRYF HHGVVTEECDPYFD+TGCSH
Sbjct:   148 CIKYNMNVSLSVNDLLACCGFLCGQGCNGGYPIAAWRYFKHHGVVTEECDPYFDNTGCSH 207

Query:   195 PGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 254
             PGCEPAYPTPKC RKCV  NQLWR SKHY +SAY++ S P+DIMAE+YKNGPVEV+FTVY
Sbjct:   208 PGCEPAYPTPKCARKCVSGNQLWRESKHYGVSAYKVRSHPDDIMAEVYKNGPVEVAFTVY 267

Query:   255 EDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG 314
             EDFAHYKSGVYKHITG  +GGHAVKLIGWGTSDDGEDYW+LANQWNRSWG DGYFKI+RG
Sbjct:   268 EDFAHYKSGVYKHITGTNIGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIRRG 327

Query:   315 SNECGIEEDVVAGLPSSKNLVKEITSAD 342
             +NECGIE  VVAGLPS +N+VK IT++D
Sbjct:   328 TNECGIEHGVVAGLPSDRNVVKGITTSD 355
GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0050790 "regulation of catalytic activity" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2133402 AT4G01610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204873 AT1G02300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P07858 CTSB "Cathepsin B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6Q7 CTSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070323-1 ctsbb "capthepsin B, b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|621509 Ctsb "cathepsin B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IN22 Ctsb "Cathepsin B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:88561 Ctsb "cathepsin B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A1E295 CTSB "Cathepsin B" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P43510CPR6_CAEEL3, ., 4, ., 2, 2, ., -0.42260.89110.8205yesno
P00787CATB_RAT3, ., 4, ., 2, 2, ., 10.45530.84520.8702yesno
P43233CATB_CHICK3, ., 4, ., 2, 2, ., 10.43880.81370.8352yesno
A1E295CATB_PIG3, ., 4, ., 2, 2, ., 10.42650.89390.9313yesno
P07688CATB_BOVIN3, ., 4, ., 2, 2, ., 10.42810.88250.9194yesno
P10605CATB_MOUSE3, ., 4, ., 2, 2, ., 10.44370.83090.8554yesno
Q5R6D1CATB_PONAB3, ., 4, ., 2, 2, ., 10.44630.89390.9203yesno
P07858CATB_HUMAN3, ., 4, ., 2, 2, ., 10.44340.89390.9203yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22.10.914
3rd Layer3.4.220.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00021714
hypothetical protein (357 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
cd02620236 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro 1e-131
pfam00112213 pfam00112, Peptidase_C1, Papain family cysteine pr 2e-89
cd02248210 cd02248, Peptidase_C1A, Peptidase C1A subfamily (M 1e-59
smart00645175 smart00645, Pept_C1, Papain family cysteine protea 2e-58
cd02621243 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al 2e-50
cd02698239 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th 2e-42
cd02619223 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS 4e-34
PTZ00200448 PTZ00200, PTZ00200, cysteine proteinase; Provision 1e-33
PTZ00049693 PTZ00049, PTZ00049, cathepsin C-like protein; Prov 3e-27
PTZ00364548 PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs 4e-25
PTZ00203348 PTZ00203, PTZ00203, cathepsin L protease; Provisio 6e-22
PTZ00021489 PTZ00021, PTZ00021, falcipain-2; Provisional 1e-21
pfam0812741 pfam08127, Propeptide_C1, Peptidase family C1 prop 1e-10
COG4870372 COG4870, COG4870, Cysteine protease [Posttranslati 3e-10
PTZ00462 1004 PTZ00462, PTZ00462, Serine-repeat antigen protein; 8e-07
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information 
 Score =  374 bits (962), Expect = e-131
 Identities = 132/241 (54%), Positives = 156/241 (64%), Gaps = 12/241 (4%)

Query: 94  PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLA 151
           P+SFDAR  WP C +I  I DQG+CGSCWAF AVEA SDR CI      N+ LS  DLL+
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 152 CCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPG-----CEPAYPTPKC 206
           CC   CGDGC+GGYP +AW+Y    GVVT  C PY       HP      C   Y TPKC
Sbjct: 61  CCSG-CGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKC 119

Query: 207 VRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYK 266
              C    + +   KH   SAY + SD  DIM EI  NGPV+ +FTVYEDF +YKSGVY+
Sbjct: 120 QDGC---EKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQ 176

Query: 267 HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 326
           H +G  +GGHAVK+IGWG  ++G  YW+ AN W   WG +GYF+I RGSNECGIE +VVA
Sbjct: 177 HTSGKQLGGHAVKIIGWGV-ENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235

Query: 327 G 327
           G
Sbjct: 236 G 236

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional Back     alignment and domain information
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional Back     alignment and domain information
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional Back     alignment and domain information
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional Back     alignment and domain information
>gnl|CDD|203856 pfam08127, Propeptide_C1, Peptidase family C1 propeptide Back     alignment and domain information
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
KOG1542372 consensus Cysteine proteinase Cathepsin F [Posttra 100.0
PTZ00203348 cathepsin L protease; Provisional 100.0
PTZ00021489 falcipain-2; Provisional 100.0
PTZ00200448 cysteine proteinase; Provisional 100.0
KOG1543325 consensus Cysteine proteinase Cathepsin L [Posttra 100.0
cd02620236 Peptidase_C1A_CathepsinB Cathepsin B group; compos 100.0
cd02621243 Peptidase_C1A_CathepsinC Cathepsin C; also known a 100.0
cd02698239 Peptidase_C1A_CathepsinX Cathepsin X; the only pap 100.0
PTZ00049693 cathepsin C-like protein; Provisional 100.0
cd02248210 Peptidase_C1A Peptidase C1A subfamily (MEROPS data 100.0
PTZ00364548 dipeptidyl-peptidase I precursor; Provisional 100.0
PF00112219 Peptidase_C1: Papain family cysteine protease This 100.0
KOG1544470 consensus Predicted cysteine proteinase TIN-ag [Ge 100.0
smart00645174 Pept_C1 Papain family cysteine protease. 100.0
cd02619223 Peptidase_C1 C1 Peptidase family (MEROPS database 100.0
PTZ00462 1004 Serine-repeat antigen protein; Provisional 100.0
COG4870372 Cysteine protease [Posttranslational modification, 99.96
cd00585437 Peptidase_C1B Peptidase C1B subfamily (MEROPS data 99.91
PF03051438 Peptidase_C1_2: Peptidase C1-like family This fami 99.67
PF0824658 Inhibitor_I29: Cathepsin propeptide inhibitor doma 98.87
COG3579444 PepC Aminopeptidase C [Amino acid transport and me 98.85
smart0084857 Inhibitor_I29 Cathepsin propeptide inhibitor domai 98.36
PF0812741 Propeptide_C1: Peptidase family C1 propeptide; Int 97.98
KOG4128 457 consensus Bleomycin hydrolases and aminopeptidases 97.6
PF05543175 Peptidase_C47: Staphopain peptidase C47; InterPro: 96.92
PF13529144 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3 96.86
PF09778212 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP 91.43
PF14399 317 Transpep_BrtH: NlpC/p60-like transpeptidase 89.66
COG4990195 Uncharacterized protein conserved in bacteria [Fun 89.65
PF12385166 Peptidase_C70: Papain-like cysteine protease AvrRp 88.98
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-76  Score=535.49  Aligned_cols=293  Identities=29%  Similarity=0.555  Sum_probs=243.9

Q ss_pred             HHHHHHHHHHhhhh-cccccccccccccHHHHH--HHHHhCCCCCeEEecCCCCCCCCHHHHHH-hhCCCCCCCCCcCCC
Q 018877            7 RSNWMWCCLQTFAE-GVVSKLKLDSHILQDSII--KEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGV   82 (349)
Q Consensus         7 ~~~~~~f~~~~~~~-~~~~e~~~r~~~~~~~~i--~~~n~~~~~~~~~~~n~~fsd~t~eE~~~-~~~~~~~~~~~~~~~   82 (349)
                      -..|..|..++.|. .+.+|...|+.+|..+++  ++++++...|-+.|+| +|||||+|||++ +++.+..........
T Consensus        68 ~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~  146 (372)
T KOG1542|consen   68 EDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDA  146 (372)
T ss_pred             HHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCcccc
Confidence            35678888888887 788999999999999864  4566644458888999 999999999998 555544211110001


Q ss_pred             CccccCCCCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCCCC
Q 018877           83 PVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCD  162 (349)
Q Consensus        83 ~~~~~~~~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~  162 (349)
                      ..........||.+||||++    |+||||||||+||||||||+++++|++++|++|++++||||+|+||+.  +++||+
T Consensus       147 ~~~~~~~~~~lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~  220 (372)
T KOG1542|consen  147 AEAPIEPGESLPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCN  220 (372)
T ss_pred             ccCcCCCCCCCCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCC
Confidence            11112344689999999998    899999999999999999999999999999999999999999999995  789999


Q ss_pred             CCchHHHHHHHHH-cCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCCCHHHHHHH
Q 018877          163 GGYPISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAE  240 (349)
Q Consensus       163 GG~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~  240 (349)
                      ||.+..||+|+++ .|+..|++|||.+..                ...|.....    ..++.|..|. ++.|+++|.+.
T Consensus       221 GGl~~nA~~~~~~~gGL~~E~dYPY~g~~----------------~~~C~~~~~----~~~v~I~~f~~l~~nE~~ia~w  280 (372)
T KOG1542|consen  221 GGLMDNAFKYIKKAGGLEKEKDYPYTGKK----------------GNQCHFDKS----KIVVSIKDFSMLSNNEDQIAAW  280 (372)
T ss_pred             CCChhHHHHHHHHhCCccccccCCccccC----------------CCccccchh----hceEEEeccEecCCCHHHHHHH
Confidence            9999999999655 689999999997751                125665442    4567888888 88899999999


Q ss_pred             HHhCCCEEEEEEcccccccCCCceeec---CCCCccCCcEEEEEEeCCCCC-CccEEEEEccCCCCCCCCceEEEEecCC
Q 018877          241 IYKNGPVEVSFTVYEDFAHYKSGVYKH---ITGDVMGGHAVKLIGWGTSDD-GEDYWILANQWNRSWGADGYFKIKRGSN  316 (349)
Q Consensus       241 l~~~gPV~v~i~v~~~f~~y~~Giy~~---~~~~~~~~Hav~IVGyg~~~~-g~~ywivkNSWG~~WG~~Gy~~i~~g~n  316 (349)
                      |.++|||+|+|++ ..++.|.+||..+   .|....++|+||||||| ... .++|||||||||++||++||+|+.||.|
T Consensus       281 Lv~~GPi~vgiNa-~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG-~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N  358 (372)
T KOG1542|consen  281 LVTFGPLSVGINA-KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYG-SSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN  358 (372)
T ss_pred             HHhcCCeEEEEch-HHHHHhcccccCCCcccCCccccCceEEEEeec-CCCCCCceEEEECCccccccccceEEEecccc
Confidence            9999999999996 5799999999987   34455589999999999 655 8999999999999999999999999999


Q ss_pred             ccccccceeEee
Q 018877          317 ECGIEEDVVAGL  328 (349)
Q Consensus       317 ~cgI~~~~~~~~  328 (349)
                      .|||++.+.+++
T Consensus       359 ~CGi~~mvss~~  370 (372)
T KOG1542|consen  359 ACGIADMVSSAA  370 (372)
T ss_pred             ccccccchhhhh
Confidence            999999988654

>PTZ00203 cathepsin L protease; Provisional Back     alignment and domain information
>PTZ00021 falcipain-2; Provisional Back     alignment and domain information
>PTZ00200 cysteine proteinase; Provisional Back     alignment and domain information
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>PTZ00049 cathepsin C-like protein; Provisional Back     alignment and domain information
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification Back     alignment and domain information
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only] Back     alignment and domain information
>smart00645 Pept_C1 Papain family cysteine protease Back     alignment and domain information
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>PTZ00462 Serine-repeat antigen protein; Provisional Back     alignment and domain information
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC) Back     alignment and domain information
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism] Back     alignment and domain information
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A Back     alignment and domain information
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism] Back     alignment and domain information
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A Back     alignment and domain information
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate Back     alignment and domain information
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase Back     alignment and domain information
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1pbh_A317 Crystal Structure Of Human Recombinant Procathepsin 1e-64
1mir_A322 Rat Procathepsin B Length = 322 8e-62
3ai8_B256 Cathepsin B In Complex With The Nitroxoline Length 1e-61
1gmy_A261 Cathepsin B Complexed With Dipeptidyl Nitrile Inhib 4e-61
3cbj_A266 Chagasin-cathepsin B Complex Length = 266 8e-61
3k9m_A254 Cathepsin B In Complex With Stefin A Length = 254 2e-60
1cpj_A260 Crystal Structures Of Recombinant Rat Cathepsin B A 1e-59
1cte_A254 Crystal Structures Of Recombinant Rat Cathepsin B A 3e-59
1ito_A256 Crystal Structure Analysis Of Bovine Spleen Catheps 2e-58
1qdq_A253 X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 2e-58
3qsd_A254 Structure Of Cathepsin B1 From Schistosoma Mansoni 2e-54
3mor_A317 Crystal Structure Of Cathepsin B From Trypanosoma B 2e-53
3hhi_A325 Crystal Structure Of Cathepsin B From T. Brucei In 2e-53
4hwy_A340 Trypanosoma Brucei Procathepsin B Solved From 40 Fs 3e-53
1huc_B205 The Refined 2.15 Angstroms X-Ray Crystal Structure 7e-40
1sp4_B205 Crystal Structure Of Ns-134 In Complex With Bovine 4e-38
3pdf_A441 Discovery Of Novel Cyanamide-Based Inhibitors Of Ca 8e-28
1jqp_A438 Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric 1e-25
3qj3_A331 Structure Of Digestive Procathepsin L2 Proteinase F 8e-21
1ef7_A242 Crystal Structure Of Human Cathepsin X Length = 242 2e-18
1deu_A277 Crystal Structure Of Human Procathepsin X: A Cystei 2e-18
2o6x_A310 Crystal Structure Of Procathepsin L1 From Fasciola 1e-17
8pch_A220 Crystal Structure Of Porcine Cathepsin H Determined 4e-17
1aec_A218 Crystal Structure Of Actinidin-E-64 Complex+ Length 4e-16
3p5w_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 4e-16
1huc_A47 The Refined 2.15 Angstroms X-Ray Crystal Structure 7e-16
3qt4_A329 Structure Of Digestive Procathepsin L 3 Of Tenebrio 2e-15
2fo5_A262 Crystal Structure Of Recombinant Barley Cysteine En 2e-15
1sp4_A48 Crystal Structure Of Ns-134 In Complex With Bovine 6e-15
3p5u_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 6e-15
1cqd_A221 The 2.1 Angstrom Structure Of A Cysteine Protease W 7e-15
3d6s_A223 Crystal Structure Of Mite Allergen Der F 1 Length = 1e-14
2f1g_A220 Cathepsin S In Complex With Non-Covalent 2-(Benzoxa 4e-14
3n3g_A217 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri 4e-14
2fq9_A225 Cathepsin S With Nitrile Inhibitor Length = 225 4e-14
3ovx_A218 Cathepsin S In Complex With A Covalent Inhibitor Wi 4e-14
1ms6_A222 Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L 5e-14
2g6d_A217 Human Cathepsin S Mutant With Vinyl Sulfone Inhibit 7e-14
1s4v_A229 The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst 7e-14
1npz_A217 Crystal Structures Of Cathepsin S Inhibitor Complex 8e-14
2act_A220 Crystallographic Refinement Of The Structure Of Act 9e-14
2c0y_A315 The Crystal Structure Of A Cys25ala Mutant Of Human 3e-13
2fye_A217 Mutant Human Cathepsin S With Irreversible Inhibito 3e-13
3iej_A222 Pyrazole-Based Cathepsin S Inhibitors With Arylalky 4e-13
3mpe_A220 Crystal Structure Of Human Cathepsin-S C25s Mutant 5e-13
3kwn_A219 Cathepsin S In Complex With Thioether Acetamide P3 5e-13
2p7u_A215 The Crystal Structure Of Rhodesain, The Major Cyste 6e-13
1yvb_A241 The Plasmodium Falciparum Cysteine Protease Falcipa 1e-12
1aim_A215 Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor 1e-12
1glo_A217 Crystal Structure Of Cys25ser Mutant Of Human Cathe 1e-12
1iwd_A215 Proposed Amino Acid Sequence And The 1.63 Angstrom 1e-12
1ewp_A215 Cruzain Bound To Mor-Leu-Hpq Length = 215 2e-12
3f75_A224 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 4e-12
3iut_A221 The Crystal Structure Of Cruzain In Complex With A 4e-12
3hd3_A215 High Resolution Crystal Structure Of Cruzain Bound 4e-12
2pns_A208 1.9 Angstrom Resolution Crystal Structure Of A Plan 5e-12
3hwn_A258 Cathepsin L With Az13010160 Length = 258 7e-12
1fh0_A221 Crystal Structure Of Human Cathepsin V Complexed Wi 8e-12
2b1m_A246 Crystal Structure Of A Papain-Fold Protein Without 9e-12
3pnr_A240 Structure Of Pbicp-C In Complex With Falcipain-2 Le 1e-11
1k3b_C69 Crystal Structure Of Human Dipeptidyl Peptidase I ( 1e-11
3of8_A221 Structural Basis For Reversible And Irreversible In 1e-11
3h89_A220 A Combined Crystallographic And Molecular Dynamics 1e-11
3hha_A220 Crystal Structure Of Cathepsin L In Complex With Az 1e-11
1cjl_A312 Crystal Structure Of A Cysteine Protease Proform Le 1e-11
2bdz_A214 Mexicain From Jacaratia Mexicana Length = 214 2e-11
1yal_A218 Carica Papaya Chymopapain At 1.7 Angstroms Resoluti 4e-11
3bcn_A209 Crystal Structure Of A Papain-Like Cysteine Proteas 4e-11
3h7d_A215 The Crystal Structure Of The Cathepsin K Variant M5 5e-11
3h6s_A221 Strucure Of Clitocypin - Cathepsin V Complex Length 1e-10
3bpm_A243 Crystal Structure Of Falcipain-3 With Its Inhibitor 1e-10
2nqd_B221 Crystal Structure Of Cysteine Protease Inhibitor, C 1e-10
3iv2_A220 Crystal Structure Of Mature Apo-Cathepsin L C25a Mu 1e-10
1cs8_A316 Crystal Structure Of Procathepsin L Length = 316 1e-10
2f7d_A215 A Mutant Rabbit Cathepsin K With A Nitrile Inhibito 2e-10
3bc3_A220 Exploring Inhibitor Binding At The S Subsites Of Ca 2e-10
3ioq_A213 Crystal Structure Of The Carica Candamarcensis Cyst 2e-10
3kse_A220 Unreduced Cathepsin L In Complex With Stefin A Leng 2e-10
1vsn_A215 Crystal Structure Of A Potent Small Molecule Inhibi 5e-10
2vhs_A217 Cathsilicatein, A Chimera Length = 217 5e-10
1u9v_A217 Crystal Structure Of The Cysteine Protease Human Ca 6e-10
7pck_A314 Crystal Structure Of Wild Type Human Procathepsin K 7e-10
1snk_A214 Cathepsin K Complexed With Carbamate Derivatized No 8e-10
1mem_A215 Crystal Structure Of Cathepsin K Complexed With A P 8e-10
3ovz_A213 Cathepsin K In Complex With A Covalent Inhibitor Wi 1e-09
3u8e_A222 Crystal Structure Of Cysteine Protease From Bulbs O 2e-09
3tnx_A363 Structure Of The Precursor Of A Thermostable Varian 2e-09
1pip_A212 Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al 2e-09
1ppp_A212 Crystal Structure Of Papain-E64-C Complex. Binding 2e-09
1khp_A212 Monoclinic Form Of Papain/zlfg-dam Covalent Complex 3e-09
1m6d_A214 Crystal Structure Of Human Cathepsin F Length = 214 4e-09
1o0e_A208 1.9 Angstrom Crystal Structure Of A Plant Cysteine 7e-09
1k3b_B164 Crystal Structure Of Human Dipeptidyl Peptidase I ( 1e-08
3rvw_A222 Crystal Structure Of Der P 1 Complexed With Fab 4c1 2e-08
1stf_E212 The Refined 2.4 Angstroms X-Ray Crystal Structure O 2e-08
2as8_A222 Crystal Structure Of Mature And Fully Active Der P 3e-08
3ima_A212 Complex Strcuture Of Tarocystatin And Papain Length 4e-08
2cio_A212 The High Resolution X-Ray Structure Of Papain Compl 4e-08
1xkg_A312 Crystal Structure Of The Major House Dust Mite Alle 2e-07
3f5v_A222 C2 Crystal Form Of Mite Allergen Der P 1 Length = 2 4e-07
1gec_E216 Glycyl Endopeptidase-complex With Benzyloxycarbonyl 4e-06
1ppo_A216 Determination Of The Structure Of Papaya Protease O 2e-05
1meg_A216 Crystal Structure Of A Caricain D158e Mutant In Com 2e-05
2wbf_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 8e-05
1pci_A322 Procaricain Length = 322 8e-05
3ch2_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 2e-04
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/320 (42%), Positives = 182/320 (56%), Gaps = 30/320 (9%)
Query: 31  HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV---KPTPKGLLLGVPVKTH 87
           H L D ++  VN+     W+A  N  F N  +   K L G     P P   ++       
Sbjct: 8   HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVM------F 58
Query: 88  DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN 147
            + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+
Sbjct: 59  TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVS 118
Query: 148 XXXXXX--XXXXXXXXXXXYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH---- 194
                              YP  AW ++   G+V+         C PY     C H    
Sbjct: 119 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNG 177
Query: 195 --PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSF 251
             P C     TPKC + C    +  ++  KHY  ++Y +++  +DIMAEIYKNGPVE +F
Sbjct: 178 SRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF 237
Query: 252 TVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 311
           +VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI
Sbjct: 238 SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKI 296
Query: 312 KRGSNECGIEEDVVAGLPSS 331
            RG + CGIE +VVAG+P +
Sbjct: 297 LRGQDHCGIESEVVAGIPRT 316
>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 Back     alignment and structure
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 Back     alignment and structure
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 Back     alignment and structure
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 Back     alignment and structure
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 Back     alignment and structure
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 Back     alignment and structure
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 Back     alignment and structure
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 Back     alignment and structure
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 Back     alignment and structure
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 Back     alignment and structure
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317 Back     alignment and structure
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325 Back     alignment and structure
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340 Back     alignment and structure
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205 Back     alignment and structure
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205 Back     alignment and structure
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441 Back     alignment and structure
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438 Back     alignment and structure
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331 Back     alignment and structure
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242 Back     alignment and structure
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277 Back     alignment and structure
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310 Back     alignment and structure
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220 Back     alignment and structure
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218 Back     alignment and structure
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 47 Back     alignment and structure
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329 Back     alignment and structure
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262 Back     alignment and structure
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 48 Back     alignment and structure
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221 Back     alignment and structure
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223 Back     alignment and structure
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220 Back     alignment and structure
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217 Back     alignment and structure
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225 Back     alignment and structure
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218 Back     alignment and structure
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222 Back     alignment and structure
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217 Back     alignment and structure
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229 Back     alignment and structure
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217 Back     alignment and structure
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220 Back     alignment and structure
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315 Back     alignment and structure
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217 Back     alignment and structure
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222 Back     alignment and structure
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220 Back     alignment and structure
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219 Back     alignment and structure
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215 Back     alignment and structure
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241 Back     alignment and structure
>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215 Back     alignment and structure
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217 Back     alignment and structure
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215 Back     alignment and structure
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215 Back     alignment and structure
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224 Back     alignment and structure
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221 Back     alignment and structure
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215 Back     alignment and structure
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208 Back     alignment and structure
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258 Back     alignment and structure
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221 Back     alignment and structure
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246 Back     alignment and structure
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240 Back     alignment and structure
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69 Back     alignment and structure
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221 Back     alignment and structure
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220 Back     alignment and structure
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220 Back     alignment and structure
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312 Back     alignment and structure
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214 Back     alignment and structure
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218 Back     alignment and structure
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209 Back     alignment and structure
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215 Back     alignment and structure
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221 Back     alignment and structure
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243 Back     alignment and structure
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221 Back     alignment and structure
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220 Back     alignment and structure
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316 Back     alignment and structure
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215 Back     alignment and structure
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220 Back     alignment and structure
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213 Back     alignment and structure
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220 Back     alignment and structure
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215 Back     alignment and structure
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217 Back     alignment and structure
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217 Back     alignment and structure
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314 Back     alignment and structure
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214 Back     alignment and structure
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215 Back     alignment and structure
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213 Back     alignment and structure
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222 Back     alignment and structure
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363 Back     alignment and structure
>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212 Back     alignment and structure
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212 Back     alignment and structure
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212 Back     alignment and structure
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214 Back     alignment and structure
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208 Back     alignment and structure
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 164 Back     alignment and structure
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222 Back     alignment and structure
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212 Back     alignment and structure
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222 Back     alignment and structure
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212 Back     alignment and structure
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212 Back     alignment and structure
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312 Back     alignment and structure
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222 Back     alignment and structure
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216 Back     alignment and structure
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216 Back     alignment and structure
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216 Back     alignment and structure
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265 Back     alignment and structure
>pdb|1PCI|A Chain A, Procaricain Length = 322 Back     alignment and structure
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 1e-150
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 1e-143
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 1e-131
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 1e-128
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 1e-115
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 1e-112
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 4e-79
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 1e-66
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 5e-43
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 3e-42
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 4e-42
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 1e-41
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 6e-40
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 2e-39
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 3e-39
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 7e-39
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 9e-39
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 2e-38
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 3e-38
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 6e-38
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 1e-37
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 2e-37
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 2e-37
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 1e-36
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 3e-36
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 4e-36
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 4e-36
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 6e-36
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 1e-35
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 2e-35
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 2e-35
1cqd_A221 Protein (protease II); cysteine protease, glycopro 3e-35
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 4e-35
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 5e-35
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 6e-35
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 2e-34
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 2e-34
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 8e-32
3u8e_A222 Papain-like cysteine protease; papain-like cystein 7e-30
3pw3_A 383 Aminopeptidase C; bleomycin, cysteine proteinase f 7e-05
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 2e-04
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325 Back     alignment and structure
 Score =  425 bits (1095), Expect = e-150
 Identities = 133/320 (41%), Positives = 175/320 (54%), Gaps = 16/320 (5%)

Query: 29  DSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV--KPTPKGLLLGVPVKT 86
           D+ +L  + +  VN   +  WKA  +    N T+ + K L GV  K     +L       
Sbjct: 6   DAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTE 65

Query: 87  HDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLS 145
            +    LP SFD+  AWP C TI +I DQ  CGSCWA  A  A+SDRFC   G  ++ +S
Sbjct: 66  EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHIS 125

Query: 146 VNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP--- 202
             DLLACC   CGDGC+GG P  AW YF   G+V++ C PY       H   +  YP   
Sbjct: 126 AGDLLACCSD-CGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCS 184

Query: 203 -----TPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDF 257
                TPKC   C           + S ++Y +  + +D M E++  GP EV+F VYEDF
Sbjct: 185 QFNFDTPKCDYTCDDPT--IPVVNYRSWTSYALQGE-DDYMRELFFRGPFEVAFDVYEDF 241

Query: 258 AHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNE 317
             Y SGVY H++G  +GGHAV+L+GWGT  +G  YW +AN WN  WG DGYF I+RGS+E
Sbjct: 242 IAYNSGVYHHVSGQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYFLIRRGSSE 300

Query: 318 CGIEEDVVAGLPSSKNLVKE 337
           CGIE+   AG+P + N    
Sbjct: 301 CGIEDGGSAGIPLAPNTAHH 320
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317 Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266 Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441 Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277 Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291 Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265 Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310 Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329 Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314 Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322 Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215 Back     alignment and structure
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316 Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262 Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224 Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241 Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246 Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243 Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221 Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215 Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214 Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213 Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208 Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 100.0
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 100.0
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 100.0
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 100.0
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 100.0
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 100.0
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 100.0
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 100.0
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 100.0
3tnx_A363 Papain; hydrolase, cytoplasm for recombinant expre 100.0
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 100.0
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 100.0
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 100.0
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 100.0
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 100.0
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 100.0
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 100.0
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 100.0
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 100.0
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 100.0
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 100.0
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 100.0
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 100.0
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 100.0
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 100.0
1cqd_A221 Protein (protease II); cysteine protease, glycopro 100.0
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 100.0
3u8e_A222 Papain-like cysteine protease; papain-like cystein 100.0
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 100.0
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 100.0
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 100.0
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 100.0
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 100.0
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 100.0
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 100.0
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 100.0
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 100.0
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 100.0
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 100.0
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 100.0
2e01_A457 Cysteine proteinase 1; bleomycin hydrolase, thiol 100.0
2cb5_A453 Protein (bleomycin hydrolase); aminopeptidase, cys 100.0
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 100.0
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 99.07
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 98.95
1pxv_A183 Cysteine protease; hydrolase; 1.80A {Staphylococcu 97.76
1cv8_A174 Staphopain; cysteine protease, thiol protease, pap 97.42
1x9y_A367 Cysteine proteinase; half-barrel, barrel-sandwich- 97.42
3erv_A236 Putative C39-like peptidase; structural genomics, 90.91
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* Back     alignment and structure
Probab=100.00  E-value=6.2e-80  Score=580.66  Aligned_cols=299  Identities=44%  Similarity=0.905  Sum_probs=209.7

Q ss_pred             ccccHHHHHHHHHhCCCCCeEEecCCCCCCCCHHHHHHhhCCCCCCCC--CcCCCCccccCCCCCCCCceecCcCCCCCC
Q 018877           30 SHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKG--LLLGVPVKTHDKSLKLPKSFDARSAWPQCS  107 (349)
Q Consensus        30 ~~~~~~~~i~~~n~~~~~~~~~~~n~~fsd~t~eE~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lP~s~D~R~~w~~~~  107 (349)
                      ..++.+++|++||++++.+|++++|++|+|||.+||++++|..+.+..  .....++...+...+||++||||++|++|+
T Consensus         7 a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~~g   86 (325)
T 3hhi_A            7 APVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCP   86 (325)
T ss_dssp             -------------------------------------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTTCT
T ss_pred             cccccHHHHHHHHhCCCCceEEecccccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCCCC
Confidence            456777899999997678999999978999999999998886543322  111112111112357999999999999999


Q ss_pred             CCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCC-CccCCHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCcCCCCcccC
Q 018877          108 TISRILDQGHCGSCWAFGAVEALSDRFCIHFGM-NLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPY  186 (349)
Q Consensus       108 ~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~-~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY  186 (349)
                      +|+||||||.||||||||++++||++++|+++. .+.||+|+|+||+. .++.||+||++..|++|+.++|+++|++|||
T Consensus        87 ~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~-~~~~GC~GG~~~~A~~yi~~~Gi~~e~~yPY  165 (325)
T 3hhi_A           87 TIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCS-DCGDGCNGGDPDRAWAYFSSTGLVSDYCQPY  165 (325)
T ss_dssp             TTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCG-GGBCTTBCBCHHHHHHHHHHTCBCBTTTSCC
T ss_pred             ccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhcc-CCCCCCCCCCHHHHHHHHHHhCCCcccccCC
Confidence            999999999999999999999999999999997 89999999999986 3468999999999999999999999999999


Q ss_pred             C-CCCCCCC--------CCCC-CCCCCccccccccccccccccceeeeeeeeEeCCCHHHHHHHHHhCCCEEEEEEcccc
Q 018877          187 F-DSTGCSH--------PGCE-PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYED  256 (349)
Q Consensus       187 ~-~~~~~~~--------~~c~-~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~i~v~~~  256 (349)
                      . +.  |.+        ..|. ....++.|...|...  .+...+.+.+..|.+ .++++||++|+++|||+|+|+++++
T Consensus       166 ~~~~--c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~--~~~~~~~~~~~~y~v-~~~~~i~~~i~~~GPV~v~i~~~~~  240 (325)
T 3hhi_A          166 PFPH--CSHHSKSKNGYPPCSQFNFDTPKCDYTCDDP--TIPVVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVYED  240 (325)
T ss_dssp             SSCC--CBSSSCCTTCCCBGGGCCCCCCCCCSSCSST--TSCCCCBCEEEEEEE-CSHHHHHHHHHHHCCEEEEEEEEHH
T ss_pred             cccc--ccccccccccCCCCCCcccCCcchhhccccc--ccccceEEeecceEe-CCHHHHHHHHHHCCCEEEEEEeccc
Confidence            6 43  332        3454 334566777777632  233345566778877 8899999999999999999999989


Q ss_pred             cccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCccccccceeEeecCCCCcc
Q 018877          257 FAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLV  335 (349)
Q Consensus       257 f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~~~p~~~~~~  335 (349)
                      |++|++|||..+++...++|||+||||| +++|++|||||||||++||++|||||+||.|+|||++++++++|.++|-.
T Consensus       241 f~~Y~~GVy~~~~~~~~~~HaV~iVGyG-~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~p~~~~~~  318 (325)
T 3hhi_A          241 FIAYNSGVYHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIPLAPNTA  318 (325)
T ss_dssp             HHTCCSSEECCCSCCEEEEEEEEEEEEE-EETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEEEC-----
T ss_pred             cccccCceecCCCCCCCCCEEEEEEEEE-ecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEeecCCCCcc
Confidence            9999999999888777789999999999 78899999999999999999999999999999999999999999998754
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Back     alignment and structure
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A* Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1 Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0 Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Back     alignment and structure
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Back     alignment and structure
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A Back     alignment and structure
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1 Back     alignment and structure
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4 Back     alignment and structure
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1gmya_254 d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens 3e-72
g8pch.1228 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax 2e-47
d1deua_275 d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens 2e-47
g1k3b.1233 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase 4e-47
d1m6da_214 d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta 2e-44
d1s4va_224 d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor 2e-44
d1aeca_218 d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi 3e-44
d1fh0a_221 d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens 2e-42
d2h7ja1217 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa 7e-42
d2oula1241 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip 1e-41
d1cs8a_316 d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens 3e-41
d1iwda_215 d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia 1e-40
d1yala_218 d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [ 1e-40
d1cqda_216 d.3.1.1 (A:) Proline-specific cysteine protease {G 3e-40
d1me4a_215 d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56 3e-40
d1ppoa_216 d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca 4e-38
d1o0ea_208 d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv 1e-37
d2r6na1215 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa 2e-37
d1khqa_212 d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId 2e-34
d1xkga1302 d.3.1.1 (A:4-305) Major mite fecal allergen der p 7e-34
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  223 bits (568), Expect = 3e-72
 Identities = 130/255 (50%), Positives = 171/255 (67%), Gaps = 16/255 (6%)

Query: 92  KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDL 149
           KLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH    +++ +S  DL
Sbjct: 1   KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60

Query: 150 LACCGFLCGDGCDGGYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH-----PGC 197
           L CCG +CGDGC+GGYP  AW ++   G+V+         C PY       H     P C
Sbjct: 61  LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120

Query: 198 EPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYED 256
                TPKC + C    +  ++  KHY  ++Y +++  +DIMAEIYKNGPVE +F+VY D
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180

Query: 257 FAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN 316
           F  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG +
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQD 239

Query: 317 ECGIEEDVVAGLPSS 331
            CGIE +VVAG+P +
Sbjct: 240 HCGIESEVVAGIPRT 254
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224 Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218 Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221 Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241 Back     information, alignment and structure
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215 Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218 Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216 Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215 Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216 Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208 Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212 Back     information, alignment and structure
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1cs8a_316 (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 100.0
d1xkga1302 Major mite fecal allergen der p 1 {House-dust mite 100.0
d1gmya_254 (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960 100.0
g1k3b.1233 Cathepsin C (dipeptidyl peptidase I), catalytic do 100.0
g8pch.1228 Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1deua_275 (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960 100.0
d1m6da_214 Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1yala_218 Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d1ppoa_216 Caricain (protease omega) {Papaya (Carica papaya) 100.0
d1me4a_215 Cruzain {Trypanosoma cruzi [TaxId: 5693]} 100.0
d2h7ja1217 (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960 100.0
d1cqda_216 Proline-specific cysteine protease {Ginger rhizome 100.0
d2oula1241 Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} 100.0
d2r6na1215 (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960 100.0
d1fh0a_221 (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960 100.0
d1aeca_218 Actinidin {Chinese gooseberry or kiwifruit (Actini 100.0
d1s4va_224 Vignain (bean endopeptidase) {Castor bean (Ricinus 100.0
d1khqa_212 Papain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d1o0ea_208 Ervatamin C {East indian rosebay (Ervatamia corona 100.0
d1iwda_215 Ervatamin B {Adam's apple (Ervatamia coronaria) [T 100.0
d3gcba_458 Bleomycin hydrolase {Baker's yeast (Saccharomyces 99.75
d2cb5a_ 453 Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 99.65
d1pxva_183 Staphopain SspB {Staphylococcus aureus [TaxId: 128 96.4
d1cv8a_173 Staphopain StpA {Staphylococcus aureus [TaxId: 128 96.33
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-70  Score=511.43  Aligned_cols=295  Identities=25%  Similarity=0.474  Sum_probs=239.2

Q ss_pred             hHHHHHHHHHHhhhhcccccccccccccHHH--HHHHHHhC---CCCCeEEecCCCCCCCCHHHHHHhhCCCCCCCCCcC
Q 018877            6 IRSNWMWCCLQTFAEGVVSKLKLDSHILQDS--IIKEVNEN---PKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLL   80 (349)
Q Consensus         6 ~~~~~~~f~~~~~~~~~~~e~~~r~~~~~~~--~i~~~n~~---~~~~~~~~~n~~fsd~t~eE~~~~~~~~~~~~~~~~   80 (349)
                      ++..|++|+++|+|....+|+..|+.+|.++  .|++||+.   .+.+|++++| +|+|||.+||++++.....+.....
T Consensus         8 l~~~F~~f~~~~~K~Y~~~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N-~fsDlt~eEf~~~~~~~~~~~~~~~   86 (316)
T d1cs8a_           8 LEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN-AFGDMTSEEFRQVMNGFQNRKPRKG   86 (316)
T ss_dssp             GHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCC-TTTTCCHHHHHHHHCCBCCCCCSCC
T ss_pred             HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEece-eccccCcHHHHhhhccccccccccC
Confidence            4567999999999996567889999999996  58999975   3579999999 9999999999996655433322211


Q ss_pred             CCCccccCCCCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCC
Q 018877           81 GVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDG  160 (349)
Q Consensus        81 ~~~~~~~~~~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~g  160 (349)
                        .....+...+||++||||++    ++++||||||.||||||||+++++|++++++++..+.||+|+|+||+....+.+
T Consensus        87 --~~~~~~~~~~lP~s~Dwr~~----g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~~~~~~~~  160 (316)
T d1cs8a_          87 --KVFQEPLFYEAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG  160 (316)
T ss_dssp             --EECCCCTTCCCCSCEEGGGG----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCG
T ss_pred             --ccccCcccccCCCceECCcC----CcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhccccccCCC
Confidence              11122345689999999987    889999999999999999999999999999999999999999999987555788


Q ss_pred             CCCCchHHHHHHHHHcC-cCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCCCHHHHH
Q 018877          161 CDGGYPISAWRYFVHHG-VVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIM  238 (349)
Q Consensus       161 C~GG~~~~a~~~~~~~G-i~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik  238 (349)
                      |.||.+..|++|+..+| +..|..+||.....                 .|.....    .....+..+. ...+++.|+
T Consensus       161 c~gg~~~~a~~y~~~~g~~~~e~~~~~~~~~~-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~l~  219 (316)
T d1cs8a_         161 CNGGLMDYAFQYVQDNGGLDSEESYPYEATEE-----------------SCKYNPK----YSVANDAGFVDIPKQEKALM  219 (316)
T ss_dssp             GGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC-----------------CCCCCGG----GEEECCCCEEECCSCHHHHH
T ss_pred             CCCCchHHHHHHHHhcCccccccccccccccc-----------------ccccccc----cccccccccccccCcHHHHH
Confidence            99999999999999997 56777788854311                 1221111    2233444444 566889999


Q ss_pred             HHHHhCCCEEEEEEcc-cccccCCCceeecCCCC-ccCCcEEEEEEeCCC---CCCccEEEEEccCCCCCCCCceEEEEe
Q 018877          239 AEIYKNGPVEVSFTVY-EDFAHYKSGVYKHITGD-VMGGHAVKLIGWGTS---DDGEDYWILANQWNRSWGADGYFKIKR  313 (349)
Q Consensus       239 ~~l~~~gPV~v~i~v~-~~f~~y~~Giy~~~~~~-~~~~Hav~IVGyg~~---~~g~~ywivkNSWG~~WG~~Gy~~i~~  313 (349)
                      ++|+.+|||+|++.+. .+|.+|++|||..+.+. ..++|||+|||||.+   .++++|||||||||++|||+|||||+|
T Consensus       220 ~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r  299 (316)
T d1cs8a_         220 KAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK  299 (316)
T ss_dssp             HHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred             HHHHHhCCeEEEEEeccchhccccCCcccCCCCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEee
Confidence            9999999999999985 57999999999887653 457999999999842   468999999999999999999999999


Q ss_pred             cC-CccccccceeEee
Q 018877          314 GS-NECGIEEDVVAGL  328 (349)
Q Consensus       314 g~-n~cgI~~~~~~~~  328 (349)
                      |. |.|||++.+++++
T Consensus       300 ~~~n~CGI~~~~~yP~  315 (316)
T d1cs8a_         300 DRRNHCGIASAASYPT  315 (316)
T ss_dssp             SSSSGGGTTTSCEEEC
T ss_pred             CCCCcCccCCeeeeee
Confidence            86 8999999987653
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure