Citrus Sinensis ID: 018911

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
ccccccccccccccccccccccccccccccccccccccccEEcHHHHcccHHHHHHHHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccEEcccccEEEcccccccccccccEEEEEEEEEEccEEcccccEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEEEccccccEEEEEEccccccccEEEEEEEEEccccccEEEccccEEEEEcc
cccccccccccccccccccccccccccHHHHccccccccEEccHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHcccccccccHHHcccccEEEEccEEEcccccccEcccccEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHcccEEcEEccccccccccccccccccccEEEEcEEEccccccEcccccEEEEEEc
maggsdaaettslscvrcgkpahlqcpkcmelklpregaafctqdcfkaswtshksVHLKAklsapgtgensslvSEGWRYCIkkgqartpklphfdwtgtlrpypisskltvpayielpdwaldgtpkvepnsdlqhvveiktPDQIERMRETCRIAREVLDAAARmirpgvttdeIDRVVHEAtitaggypsplnyhffpkscctsvnevichgipdsrkledgdivnIDVTVYYkgvhgdlnetyfvgnadEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFscfaktgkiVLWSWYWRAVSLCA
maggsdaaettslscvrcgkPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKaklsapgtgensslvSEGWRYCIKKGqartpklphfdwtGTLRPYPISSKLTVPAYIELPDWALDGTpkvepnsdlqhvveiktpdqieRMRETCRIAREVLdaaarmirpgvttdeidrVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIpdsrkledgdiVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAisivkpgvrFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
************LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKA************LVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKV*****LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLC*
********************PAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH**********************YCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTP*************IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
************LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASW************************SEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
************LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKA*****************WRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPN*DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
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MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVSLCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q9SLN5398 Methionine aminopeptidase yes no 0.891 0.781 0.792 1e-148
Q5ZIM5385 Methionine aminopeptidase yes no 0.810 0.735 0.508 3e-78
Q4QRK0386 Methionine aminopeptidase yes no 0.808 0.730 0.498 9e-78
A6QLA4386 Methionine aminopeptidase yes no 0.810 0.733 0.511 9e-78
P53582386 Methionine aminopeptidase yes no 0.810 0.733 0.511 1e-77
Q5RBF3386 Methionine aminopeptidase yes no 0.810 0.733 0.511 1e-77
Q7ZWV9385 Methionine aminopeptidase N/A no 0.810 0.735 0.498 4e-77
Q8BP48386 Methionine aminopeptidase yes no 0.810 0.733 0.511 7e-77
Q5I0A0385 Methionine aminopeptidase yes no 0.779 0.706 0.510 6e-76
Q54WU3367 Methionine aminopeptidase yes no 0.785 0.746 0.468 3e-73
>sp|Q9SLN5|AMP1A_ARATH Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1 Back     alignment and function desciption
 Score =  525 bits (1351), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/314 (79%), Positives = 279/314 (88%), Gaps = 3/314 (0%)

Query: 1   MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60
           MA  SDA+   +LSC RC KPAHLQCPKC++LKLPRE A+FCTQ+CFKA+W+SHKSVH+K
Sbjct: 1   MASESDASSIATLSCARCEKPAHLQCPKCIDLKLPREQASFCTQECFKAAWSSHKSVHVK 60

Query: 61  AKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELP 120
           A+LS+ G  +NS L+S+GW YC+KKGQARTPKLPHFDWTG L+ YPIS+K  VPA IE P
Sbjct: 61  AQLSSIGD-QNSDLISQGWLYCVKKGQARTPKLPHFDWTGPLKQYPISTKRVVPAEIEKP 119

Query: 121 DWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDR 180
           DWA+DGTPKVEPNSDLQHVVEIKTP+QI+RMRETC+IAREVLDAAAR+I PGVTTDEIDR
Sbjct: 120 DWAIDGTPKVEPNSDLQHVVEIKTPEQIQRMRETCKIAREVLDAAARVIHPGVTTDEIDR 179

Query: 181 VVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGV 240
           VVHEATI AGGYPSPLNY+FFPKSCCTSVNEVICHGIPD+RKLEDGDIVN+DVTV YKG 
Sbjct: 180 VVHEATIAAGGYPSPLNYYFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYKGC 239

Query: 241 HGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
           HGDLNETYFVGN DEASRQLV+CTYECLEKAI+IVKPGVRFREIGE++NRHATMSG SVV
Sbjct: 240 HGDLNETYFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRFREIGEIVNRHATMSGLSVV 299

Query: 301 MHNVWFAI--VIHC 312
                  I  + HC
Sbjct: 300 RSYCGHGIGDLFHC 313
Removes the N-terminal methionine from nascent proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 8
>sp|Q5ZIM5|AMPM1_CHICK Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1 Back     alignment and function description
>sp|Q4QRK0|AMPM1_DANRE Methionine aminopeptidase 1 OS=Danio rerio GN=metap1 PE=2 SV=2 Back     alignment and function description
>sp|A6QLA4|AMPM1_BOVIN Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1 Back     alignment and function description
>sp|P53582|AMPM1_HUMAN Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RBF3|AMPM1_PONAB Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZWV9|AMPM1_XENLA Methionine aminopeptidase 1 OS=Xenopus laevis GN=metap1 PE=2 SV=2 Back     alignment and function description
>sp|Q8BP48|AMPM1_MOUSE Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=2 SV=1 Back     alignment and function description
>sp|Q5I0A0|AMPM1_XENTR Methionine aminopeptidase 1 OS=Xenopus tropicalis GN=metap1 PE=2 SV=1 Back     alignment and function description
>sp|Q54WU3|AMPM1_DICDI Methionine aminopeptidase 1 OS=Dictyostelium discoideum GN=metap1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
255541234397 methionine aminopeptidase, putative [Ric 0.853 0.750 0.843 1e-151
356496352397 PREDICTED: methionine aminopeptidase 1A- 0.888 0.780 0.818 1e-150
356506316397 PREDICTED: methionine aminopeptidase 1A- 0.888 0.780 0.821 1e-149
225453987398 PREDICTED: methionine aminopeptidase 1A 0.873 0.766 0.830 1e-149
449432281402 PREDICTED: methionine aminopeptidase 1A- 0.893 0.776 0.789 1e-148
224127342396 predicted protein [Populus trichocarpa] 0.879 0.775 0.803 1e-146
15225437398 methionine aminopeptidase 1A [Arabidopsi 0.891 0.781 0.792 1e-146
297824569401 hypothetical protein ARALYDRAFT_903964 [ 0.893 0.778 0.797 1e-146
21593270398 putative methionine aminopeptidase [Arab 0.891 0.781 0.792 1e-146
388498902397 unknown [Medicago truncatula] 0.888 0.780 0.786 1e-143
>gi|255541234|ref|XP_002511681.1| methionine aminopeptidase, putative [Ricinus communis] gi|223548861|gb|EEF50350.1| methionine aminopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 253/300 (84%), Positives = 279/300 (93%), Gaps = 2/300 (0%)

Query: 1   MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60
           MAGGS+AAE T L C RC KPAHLQCPKCMELKLPREGAAFCTQDCFKASW++HKSVH+K
Sbjct: 1   MAGGSEAAEATPLLCARCEKPAHLQCPKCMELKLPREGAAFCTQDCFKASWSTHKSVHVK 60

Query: 61  AKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELP 120
           AKLS+    +NS L +EGWRYC+++GQ RTPKLP+FDWTGTLRPYPIS    VPA+I+ P
Sbjct: 61  AKLSS--IEQNSDLSNEGWRYCLRRGQDRTPKLPYFDWTGTLRPYPISPYRVVPAHIDKP 118

Query: 121 DWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDR 180
           DWA+DG PK+EPNSDLQHVVEIKT DQI+RMRETCRI+REVLDAAAR+IRPG+TTDE+DR
Sbjct: 119 DWAVDGIPKIEPNSDLQHVVEIKTTDQIQRMRETCRISREVLDAAARVIRPGITTDEVDR 178

Query: 181 VVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGV 240
           VVHEATI+AGGYPSPLNYHFFPKSCCTSVNEVICHGIPD+RKLEDGDIVN+DV+VYYKGV
Sbjct: 179 VVHEATISAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVSVYYKGV 238

Query: 241 HGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
           HGDLNET+FVGN DEASRQLVQCTYECLEKAISIVKPGVRFRE+GEVINRHATMSG SVV
Sbjct: 239 HGDLNETFFVGNVDEASRQLVQCTYECLEKAISIVKPGVRFREVGEVINRHATMSGLSVV 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356496352|ref|XP_003517032.1| PREDICTED: methionine aminopeptidase 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|356506316|ref|XP_003521931.1| PREDICTED: methionine aminopeptidase 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|225453987|ref|XP_002274528.1| PREDICTED: methionine aminopeptidase 1A [Vitis vinifera] gi|296089187|emb|CBI38890.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432281|ref|XP_004133928.1| PREDICTED: methionine aminopeptidase 1A-like [Cucumis sativus] gi|449528877|ref|XP_004171428.1| PREDICTED: methionine aminopeptidase 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224127342|ref|XP_002320050.1| predicted protein [Populus trichocarpa] gi|222860823|gb|EEE98365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15225437|ref|NP_182049.1| methionine aminopeptidase 1A [Arabidopsis thaliana] gi|12229672|sp|Q9SLN5.1|AMP1A_ARATH RecName: Full=Methionine aminopeptidase 1A; Short=MAP 1A; Short=MetAP 1A; AltName: Full=Peptidase M 1A gi|11320954|gb|AAG33974.1|AF250960_1 methionine aminopeptidase-like protein [Arabidopsis thaliana] gi|2583129|gb|AAB82638.1| putative methionine aminopeptidase [Arabidopsis thaliana] gi|20466153|gb|AAM20394.1| putative methionine aminopeptidase [Arabidopsis thaliana] gi|30725654|gb|AAP37849.1| At2g45240 [Arabidopsis thaliana] gi|110742696|dbj|BAE99259.1| putative methionine aminopeptidase [Arabidopsis thaliana] gi|330255434|gb|AEC10528.1| methionine aminopeptidase 1A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297824569|ref|XP_002880167.1| hypothetical protein ARALYDRAFT_903964 [Arabidopsis lyrata subsp. lyrata] gi|297326006|gb|EFH56426.1| hypothetical protein ARALYDRAFT_903964 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21593270|gb|AAM65219.1| putative methionine aminopeptidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388498902|gb|AFK37517.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:2050916398 MAP1A "methionine aminopeptida 0.891 0.781 0.792 2.7e-139
UNIPROTKB|Q5ZIM5385 METAP1 "Methionine aminopeptid 0.810 0.735 0.515 2.7e-75
UNIPROTKB|F1S0C0386 METAP1 "Methionine aminopeptid 0.810 0.733 0.515 7.3e-75
UNIPROTKB|A6QLA4386 METAP1 "Methionine aminopeptid 0.810 0.733 0.511 1.5e-74
UNIPROTKB|P53582386 METAP1 "Methionine aminopeptid 0.810 0.733 0.511 1.5e-74
ZFIN|ZDB-GENE-050626-124405 metap1 "methionyl aminopeptida 0.808 0.696 0.501 1.5e-74
UNIPROTKB|F1NI90379 METAP1 "Methionine aminopeptid 0.779 0.717 0.520 5.1e-74
MGI|MGI:1922874386 Metap1 "methionyl aminopeptida 0.810 0.733 0.511 1.1e-73
RGD|1305545386 Metap1 "methionyl aminopeptida 0.810 0.733 0.508 1.4e-73
WB|WBGene00003129371 map-1 [Caenorhabditis elegans 0.593 0.557 0.566 3.2e-73
TAIR|locus:2050916 MAP1A "methionine aminopeptidase 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
 Identities = 249/314 (79%), Positives = 279/314 (88%)

Query:     1 MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60
             MA  SDA+   +LSC RC KPAHLQCPKC++LKLPRE A+FCTQ+CFKA+W+SHKSVH+K
Sbjct:     1 MASESDASSIATLSCARCEKPAHLQCPKCIDLKLPREQASFCTQECFKAAWSSHKSVHVK 60

Query:    61 AKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELP 120
             A+LS+ G  +NS L+S+GW YC+KKGQARTPKLPHFDWTG L+ YPIS+K  VPA IE P
Sbjct:    61 AQLSSIGD-QNSDLISQGWLYCVKKGQARTPKLPHFDWTGPLKQYPISTKRVVPAEIEKP 119

Query:   121 DWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDR 180
             DWA+DGTPKVEPNSDLQHVVEIKTP+QI+RMRETC+IAREVLDAAAR+I PGVTTDEIDR
Sbjct:   120 DWAIDGTPKVEPNSDLQHVVEIKTPEQIQRMRETCKIAREVLDAAARVIHPGVTTDEIDR 179

Query:   181 VVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGV 240
             VVHEATI AGGYPSPLNY+FFPKSCCTSVNEVICHGIPD+RKLEDGDIVN+DVTV YKG 
Sbjct:   180 VVHEATIAAGGYPSPLNYYFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYKGC 239

Query:   241 HGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
             HGDLNETYFVGN DEASRQLV+CTYECLEKAI+IVKPGVRFREIGE++NRHATMSG SVV
Sbjct:   240 HGDLNETYFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRFREIGEIVNRHATMSGLSVV 299

Query:   301 MHNVWFAI--VIHC 312
                    I  + HC
Sbjct:   300 RSYCGHGIGDLFHC 313
GO:0004177 "aminopeptidase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA
GO:0008235 "metalloexopeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009987 "cellular process" evidence=IEA
GO:0016485 "protein processing" evidence=NAS
GO:0031365 "N-terminal protein amino acid modification" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0010048 "vernalization response" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
UNIPROTKB|Q5ZIM5 METAP1 "Methionine aminopeptidase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0C0 METAP1 "Methionine aminopeptidase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLA4 METAP1 "Methionine aminopeptidase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P53582 METAP1 "Methionine aminopeptidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050626-124 metap1 "methionyl aminopeptidase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NI90 METAP1 "Methionine aminopeptidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1922874 Metap1 "methionyl aminopeptidase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305545 Metap1 "methionyl aminopeptidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00003129 map-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZIM5AMPM1_CHICK3, ., 4, ., 1, 1, ., 1, 80.50840.81080.7350yesno
Q9SLN5AMP1A_ARATH3, ., 4, ., 1, 1, ., 1, 80.79290.89110.7814yesno
P53582AMPM1_HUMAN3, ., 4, ., 1, 1, ., 1, 80.51170.81080.7331yesno
Q8BP48AMPM1_MOUSE3, ., 4, ., 1, 1, ., 1, 80.51170.81080.7331yesno
A6QLA4AMPM1_BOVIN3, ., 4, ., 1, 1, ., 1, 80.51170.81080.7331yesno
Q5I0A0AMPM1_XENTR3, ., 4, ., 1, 1, ., 1, 80.51040.77930.7064yesno
Q5RBF3AMPM1_PONAB3, ., 4, ., 1, 1, ., 1, 80.51170.81080.7331yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11.180.991
3rd Layer3.4.110.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIV0718
RecName- Full=Methionine aminopeptidase; EC=3.4.11.18;; Removes the amino-terminal methionine from nascent proteins (By similarity) (396 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IV.3048.1
SubName- Full=Putative uncharacterized protein; (227 aa)
•     • 0.713
gw1.VI.8.1
SecY protein (430 aa)
•     • 0.668
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
•     • 0.654
eugene3.00141000
hypothetical protein (227 aa)
•     • 0.652
gw1.16155.2.1
Predicted protein (206 aa)
•     • 0.625
gw1.XVIII.2978.1
SecY protein (478 aa)
•     • 0.584
gw1.VI.1738.1
hypothetical protein (72 aa)
•       0.563
gw1.II.2942.1
SubName- Full=Putative uncharacterized protein; (218 aa)
•     • 0.546
estExt_Genewise1_v1.C_LG_X3691
SubName- Full=Putative uncharacterized protein; (165 aa)
•     • 0.544
fgenesh4_pm.C_LG_XVIII000087
hypothetical protein (78 aa)
•       0.543

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
PLN03158396 PLN03158, PLN03158, methionine aminopeptidase; Pro 0.0
cd01086238 cd01086, MetAP1, Methionine Aminopeptidase 1 7e-86
PRK05716252 PRK05716, PRK05716, methionine aminopeptidase; Val 1e-80
COG0024255 COG0024, Map, Methionine aminopeptidase [Translati 3e-72
PRK12896255 PRK12896, PRK12896, methionine aminopeptidase; Rev 3e-67
TIGR00500247 TIGR00500, met_pdase_I, methionine aminopeptidase, 3e-66
PRK12318291 PRK12318, PRK12318, methionine aminopeptidase; Pro 6e-50
pfam00557208 pfam00557, Peptidase_M24, Metallopeptidase family 7e-47
cd01066207 cd01066, APP_MetAP, A family including aminopeptid 1e-35
COG0006384 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid 1e-29
PRK08671291 PRK08671, PRK08671, methionine aminopeptidase; Pro 9e-24
PRK12897248 PRK12897, PRK12897, methionine aminopeptidase; Rev 1e-23
cd01092208 cd01092, APP-like, Similar to Prolidase and Aminop 1e-22
cd01088291 cd01088, MetAP2, Methionine Aminopeptidase 2 3e-17
TIGR00501295 TIGR00501, met_pdase_II, methionine aminopeptidase 7e-17
PRK09795361 PRK09795, PRK09795, aminopeptidase; Provisional 2e-11
PRK10879438 PRK10879, PRK10879, proline aminopeptidase P II; P 2e-10
PRK15173323 PRK15173, PRK15173, peptidase; Provisional 4e-10
PRK14575406 PRK14575, PRK14575, putative peptidase; Provisiona 4e-10
PRK07281286 PRK07281, PRK07281, methionine aminopeptidase; Rev 9e-10
PRK14576405 PRK14576, PRK14576, putative endopeptidase; Provis 1e-09
cd01087243 cd01087, Prolidase, Prolidase 5e-09
TIGR00495 389 TIGR00495, crvDNA_42K, 42K curved DNA binding prot 2e-07
PLN03144 606 PLN03144, PLN03144, Carbon catabolite repressor pr 2e-06
cd01089228 cd01089, PA2G4-like, Related to aminopepdidase M, 5e-06
cd01090228 cd01090, Creatinase, Creatine amidinohydrolase 0.001
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional Back     alignment and domain information 
 Score =  587 bits (1514), Expect = 0.0
 Identities = 242/297 (81%), Positives = 267/297 (89%), Gaps = 2/297 (0%)

Query: 4   GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKL 63
             +A  T+ L+C RC KPAHLQCPKC+ELKLPREGA+FC+QDCFKA+W+SHKSVH KAKL
Sbjct: 1   MEEALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKL 60

Query: 64  SAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWA 123
           S+   G+NS   +EGW YC+KKGQART KLP FDWTG LRPYPIS +  VP +I  PDWA
Sbjct: 61  SS--IGQNSDAPAEGWLYCLKKGQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWA 118

Query: 124 LDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH 183
           LDGTPK+EPNSDLQH VEIKTP+QI+RMRETCRIAREVLDAAAR I+PGVTTDEIDRVVH
Sbjct: 119 LDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVH 178

Query: 184 EATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGD 243
           EATI AGGYPSPLNYHFFPKSCCTSVNEVICHGIPD+RKLEDGDIVN+DVTVYYKG HGD
Sbjct: 179 EATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGD 238

Query: 244 LNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
           LNET+FVGN DEASRQLV+CTYECLEKAI+IVKPGVR+RE+GEVINRHATMSG SVV
Sbjct: 239 LNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVV 295

Length = 396
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1 Back     alignment and domain information
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated Back     alignment and domain information
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed Back     alignment and domain information
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I Back     alignment and domain information
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24 Back     alignment and domain information
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed Back     alignment and domain information
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2 Back     alignment and domain information
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II Back     alignment and domain information
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional Back     alignment and domain information
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional Back     alignment and domain information
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional Back     alignment and domain information
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed Back     alignment and domain information
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|238520 cd01087, Prolidase, Prolidase Back     alignment and domain information
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein Back     alignment and domain information
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
KOG2738369 consensus Putative methionine aminopeptidase [Post 100.0
PLN03158396 methionine aminopeptidase; Provisional 100.0
COG0024255 Map Methionine aminopeptidase [Translation, riboso 100.0
PRK12897248 methionine aminopeptidase; Reviewed 100.0
PRK07281286 methionine aminopeptidase; Reviewed 100.0
PRK12318291 methionine aminopeptidase; Provisional 100.0
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 100.0
PRK12896255 methionine aminopeptidase; Reviewed 100.0
PRK05716252 methionine aminopeptidase; Validated 100.0
PRK09795361 aminopeptidase; Provisional 100.0
COG0006384 PepP Xaa-Pro aminopeptidase [Amino acid transport 100.0
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 100.0
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 100.0
PRK15173323 peptidase; Provisional 100.0
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 100.0
PRK10879438 proline aminopeptidase P II; Provisional 100.0
cd01087243 Prolidase Prolidase. E.C. 3.4.13.9. Also known as 100.0
PRK14575406 putative peptidase; Provisional 100.0
PRK14576405 putative endopeptidase; Provisional 100.0
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 100.0
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 100.0
PRK13607443 proline dipeptidase; Provisional 100.0
TIGR00495 389 crvDNA_42K 42K curved DNA binding protein. Protein 100.0
PTZ00053 470 methionine aminopeptidase 2; Provisional 100.0
cd01085224 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also 100.0
cd01066207 APP_MetAP A family including aminopeptidase P, ami 100.0
PRK08671291 methionine aminopeptidase; Provisional 100.0
TIGR00501295 met_pdase_II methionine aminopeptidase, type II. M 100.0
cd01088291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 100.0
cd01091243 CDC68-like Related to aminopeptidase P and aminope 100.0
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 100.0
KOG2414488 consensus Putative Xaa-Pro aminopeptidase [Amino a 99.97
KOG2737492 consensus Putative metallopeptidase [General funct 99.96
KOG1189 960 consensus Global transcriptional regulator, cell d 99.87
KOG2413606 consensus Xaa-Pro aminopeptidase [Amino acid trans 99.79
KOG2775 397 consensus Metallopeptidase [General function predi 99.69
COG5406 1001 Nucleosome binding factor SPN, SPT16 subunit [Tran 99.67
KOG2776 398 consensus Metallopeptidase [General function predi 99.62
PLN03144 606 Carbon catabolite repressor protein 4 homolog; Pro 99.37
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 97.87
cd01066207 APP_MetAP A family including aminopeptidase P, ami 97.51
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 97.2
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 97.15
PLN03158 396 methionine aminopeptidase; Provisional 97.1
PRK05716252 methionine aminopeptidase; Validated 97.04
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 96.95
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 96.91
PRK15173323 peptidase; Provisional 96.86
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 96.77
PRK09795361 aminopeptidase; Provisional 96.76
cd01088 291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 96.73
PRK14575406 putative peptidase; Provisional 96.72
PRK12897248 methionine aminopeptidase; Reviewed 96.71
cd01091243 CDC68-like Related to aminopeptidase P and aminope 96.59
PRK14576405 putative endopeptidase; Provisional 96.57
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 96.56
PRK12318291 methionine aminopeptidase; Provisional 96.49
PRK12896255 methionine aminopeptidase; Reviewed 96.48
cd01087243 Prolidase Prolidase. E.C. 3.4.13.9. Also known as 96.45
PRK08671291 methionine aminopeptidase; Provisional 96.45
PRK07281286 methionine aminopeptidase; Reviewed 96.36
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 96.14
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 96.13
COG0024 255 Map Methionine aminopeptidase [Translation, riboso 96.08
TIGR00495389 crvDNA_42K 42K curved DNA binding protein. Protein 95.65
TIGR00501295 met_pdase_II methionine aminopeptidase, type II. M 95.55
COG0006384 PepP Xaa-Pro aminopeptidase [Amino acid transport 95.46
KOG2738 369 consensus Putative methionine aminopeptidase [Post 95.43
PRK10879438 proline aminopeptidase P II; Provisional 94.34
PTZ00053470 methionine aminopeptidase 2; Provisional 94.07
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 92.81
cd01085224 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also 91.63
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 90.71
PRK13607443 proline dipeptidase; Provisional 90.57
PRK0041862 DNA gyrase inhibitor; Reviewed 87.43
KOG2857157 consensus Predicted MYND Zn-finger protein/hormone 87.02
COG302465 Uncharacterized protein conserved in bacteria [Fun 85.52
PRK0134357 zinc-binding protein; Provisional 84.94
KOG2775 397 consensus Metallopeptidase [General function predi 81.18
PF0388457 DUF329: Domain of unknown function (DUF329); Inter 80.76
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-94  Score=654.78  Aligned_cols=315  Identities=53%  Similarity=0.867  Sum_probs=297.9

Q ss_pred             ccccccc--cCcccccccchhhhcCCCCCCccccChhhhhhchhHHHHHhhhhccCCCCCCCCCCccccccchhcccCCC
Q 018911           11 TSLSCVR--CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQA   88 (349)
Q Consensus        11 ~~~~c~~--c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (349)
                      ....|.+  |+++|+||||+|+|++|+  .+|||+|+|||.+|..||++|.++.                    .....+
T Consensus         5 ~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~--------------------~~~~~g   62 (369)
T KOG2738|consen    5 AKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKAL--------------------RIRKEG   62 (369)
T ss_pred             hhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccch--------------------hhhhhc
Confidence            3457966  999999999999999997  6899999999999999999997540                    013456


Q ss_pred             CCCCCCCCCcCCCccccCCCCCcccCCcCCCcccccCCCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018911           89 RTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARM  168 (349)
Q Consensus        89 ~~~~~~~~~~~g~~~p~~~s~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~  168 (349)
                      .++|||.|.|+|+||||++||+|.||++|+||||+++|++.+|+.+.......|++++||+.||+||+|++++|+++..+
T Consensus        63 ~~~p~p~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~~  142 (369)
T KOG2738|consen   63 QYNPWPKFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAATL  142 (369)
T ss_pred             cCCCCccccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            78899999999999999999999999999999999999999999888776789999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeE
Q 018911          169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETY  248 (349)
Q Consensus       169 i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~  248 (349)
                      ++||+|++||++++|++++++|+|||||||++||+++|+|+|+++|||+|+.|+|++|||||||++++++|||+|+++||
T Consensus       143 v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneTf  222 (369)
T KOG2738|consen  143 VRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNETF  222 (369)
T ss_pred             cCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccccccccccCcCCCCcccccccCCCc
Q 018911          249 FVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSC  328 (349)
Q Consensus       249 ~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~  328 (349)
                      +||+++++.++|+++++||++.||+++|||++++||++.|++++.++||+|++.|+|||||..||..|.|++|++|...+
T Consensus       223 fvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr~ycGHGig~~FH~~PnipHya~n~a~G  302 (369)
T KOG2738|consen  223 FVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFHCAPNIPHYAKNKAPG  302 (369)
T ss_pred             EeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCceeehhhhccccccccccCCCchhhcccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             ccCCCcEEE--------------EcCCceeeec
Q 018911          329 FAKTGKIVL--------------WSWYWRAVSL  347 (349)
Q Consensus       329 ~Le~Gmv~~--------------le~g~~~~t~  347 (349)
                      +|++||+|+              |.|+||.+|.
T Consensus       303 vM~~G~tFTIEPmit~G~~~d~tWPD~WT~vTa  335 (369)
T KOG2738|consen  303 VMKPGQTFTIEPMITIGTWEDITWPDDWTAVTA  335 (369)
T ss_pred             eeecCceEEeeeeecccccccccCCCCceEEec
Confidence            999999976              5578888874

>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>PRK15173 peptidase; Provisional Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information
>cd01087 Prolidase Prolidase Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PRK14576 putative endopeptidase; Provisional Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK13607 proline dipeptidase; Provisional Back     alignment and domain information
>TIGR00495 crvDNA_42K 42K curved DNA binding protein Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>cd01085 APP X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2737 consensus Putative metallopeptidase [General function prediction only] Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2775 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>KOG2776 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>PRK15173 peptidase; Provisional Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>PRK14576 putative endopeptidase; Provisional Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01087 Prolidase Prolidase Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00495 crvDNA_42K 42K curved DNA binding protein Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd01085 APP X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PRK13607 proline dipeptidase; Provisional Back     alignment and domain information
>PRK00418 DNA gyrase inhibitor; Reviewed Back     alignment and domain information
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription] Back     alignment and domain information
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK01343 zinc-binding protein; Provisional Back     alignment and domain information
>KOG2775 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
4fli_A326 Human Metap1 With Bengamide Analog Y16, In Mn Form 2e-66
2g6p_A304 Crystal Structure Of Truncated (Delta 1-89) Human M 3e-66
2b3h_A329 Crystal Structure Of Human Methionine Aminopeptidas 3e-66
3s6b_A368 Crystal Structure Of Methionine Aminopeptidase 1b F 5e-56
4fuk_A337 Aminopeptidase From Trypanosoma Brucei Length = 337 3e-53
3iu7_A288 M. Tuberculosis Methionine Aminopeptidase With Mn I 2e-44
1y1n_A291 Identification Of Sh3 Motif In M. Tuberculosis Meth 2e-44
3pka_A285 M. Tuberculosis Metap With Bengamide Analog Y02, In 2e-44
3ror_A291 Crystal Structure Of C105s Mutant Of Mycobacterium 2e-43
3mat_A265 E.coli Methionine Aminopeptidase Transition-state I 1e-35
2mat_A264 E.Coli Methionine Aminopeptidase At 1.9 Angstrom Re 1e-35
4mat_A278 E.Coli Methionine Aminopeptidase His79ala Mutant Le 2e-35
4a6v_A265 X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn 2e-35
1xnz_A264 Crystal Structure Of Mn(Ii) Form Of E. Coli. Methio 2e-35
2p99_A261 E. Coli Methionine Aminopeptidase Monometalated Wit 2e-35
1c27_A263 E. Coli Methionine Aminopeptidase:norleucine Phosph 2e-35
2p98_A262 E. Coli Methionine Aminopeptidase Monometalated Wit 2e-35
2gg0_A263 Novel Bacterial Methionine Aminopeptidase Inhibitor 2e-35
2gu4_A263 E. Coli Methionine Aminopeptidase In Complex With N 3e-35
2gtx_A261 Structural Basis Of Catalysis By Mononuclear Methio 3e-35
3mx6_A262 Crystal Structure Of Methionine Aminopeptidase From 2e-34
3mr1_A252 Crystal Structure Of Methionine Aminopeptidase From 2e-34
1o0x_A262 Crystal Structure Of Methionine Aminopeptidase (Tm1 6e-25
1qxw_A252 Crystal Structure Of Staphyloccocus Aureus In Compl 2e-22
3tav_A286 Crystal Structure Of A Methionine Aminopeptidase Fr 1e-20
3tb5_A264 Crystal Structure Of The Enterococcus Faecalis Meth 2e-18
2dfi_A 301 Crystal Structure Of Pf-Map(1-292)-C Length = 301 6e-13
1xgs_A295 Methionine Aminopeptidase From Hyperthermophile Pyr 7e-13
1pv9_A348 Prolidase From Pyrococcus Furiosus Length = 348 9e-10
3q6d_A356 Xaa-Pro Dipeptidase From Bacillus Anthracis. Length 2e-09
1wy2_A351 Crystal Structure Of The Prolidase From Pyrococcus 3e-09
2v3z_A440 Glu383ala Escherichia Coli Aminopeptidase P In Comp 9e-09
1wl9_A440 Structure Of Aminopeptidase P From E. Coli Length = 1e-08
2bwv_A440 His361ala Escherichia Coli Aminopeptidase P Length 1e-08
2bww_A440 His350ala Escherichia Coli Aminopeptidase P Length 3e-08
2bwy_A440 Glu383ala Escherichia Coli Aminopeptidase P Length 3e-08
1m35_A440 Aminopeptidase P From Escherichia Coli Length = 440 3e-08
1jaw_A440 Aminopeptidase P From E. Coli Low Ph Form Length = 3e-08
2bws_A440 His243ala Escherichia Coli Aminopeptidase P Length 1e-07
2bwx_A441 His354ala Escherichia Coli Aminopeptidase P Length 2e-07
2bwt_A440 Asp260ala Escherichia Coli Aminopeptidase P Length 3e-07
2bwu_A440 Asp271ala Escherichia Coli Aminopeptidase P Length 3e-07
2zsg_A359 Crystal Structure Of X-Pro Aminopeptidase From Ther 5e-05
2v6c_A 353 Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1) 1e-04
3j2i_A 394 Structure Of Late Pre-60s Ribosomal Subunits With N 8e-04
2q8k_A 401 The Crystal Structure Of Ebp1 Length = 401 9e-04
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form Length = 326 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)
Query: 96  FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
           + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR
Sbjct: 2   YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 61
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
             CR+AREVLD AA MI+PGVTT+EID  VH A I    YPSPLNY+ FPKSCCTSVNEV
Sbjct: 62  LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 121
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
           ICHGIPD R L++GDIVN+D+T+Y  G HGDLNET+FVG  D+ +R+LVQ TYECL +AI
Sbjct: 122 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 181
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVV 300
             VKPGVR+RE+G +I +HA  +GFSVV
Sbjct: 182 DAVKPGVRYRELGNIIQKHAQANGFSVV 209
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human Methionine Aminopeptidase Type 1 In Complex With Pyridyl Pyrimidine Derivative Length = 304 Back     alignment and structure
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type I With A Third Cobalt In The Active Site Length = 329 Back     alignment and structure
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From Plasmodium Falciparum, Pf10_0150 Length = 368 Back     alignment and structure
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei Length = 337 Back     alignment and structure
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn Inhibitor A02 Length = 288 Back     alignment and structure
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine Aminopeptidase Suggests A Mode Of Interaction With The Ribosome Length = 291 Back     alignment and structure
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn Form Length = 285 Back     alignment and structure
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium Tuberculosis Methionine Aminopeptidase Length = 291 Back     alignment and structure
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state Inhibitor Complex Length = 265 Back     alignment and structure
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom Resolution Length = 264 Back     alignment and structure
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant Length = 278 Back     alignment and structure
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn Complexes Length = 265 Back     alignment and structure
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine Aminopeptidase In Complex With 5-(2-Chlorophenyl)furan-2- Carboxylic Acid Length = 264 Back     alignment and structure
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With Inhibitor Ye6 Length = 261 Back     alignment and structure
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate Complex Length = 263 Back     alignment and structure
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With Inhibitor Ye7 Length = 262 Back     alignment and structure
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors Length = 263 Back     alignment and structure
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1: 0.5, Di-Metalated Length = 263 Back     alignment and structure
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine Aminopeptidase Length = 261 Back     alignment and structure
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From Ricketts Prowazekii Bound To Methionine Length = 262 Back     alignment and structure
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From Ricketts Prowazekii Length = 252 Back     alignment and structure
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478) From Thermotoga Maritima At 1.90 A Resolution Length = 262 Back     alignment and structure
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With An Aminoketone Inhibitor 54135. Length = 252 Back     alignment and structure
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From Mycobacterium Abscessus Length = 286 Back     alignment and structure
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine Aminopeptidase Apo Form Length = 264 Back     alignment and structure
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C Length = 301 Back     alignment and structure
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus Furiosus Length = 295 Back     alignment and structure
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus Length = 348 Back     alignment and structure
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis. Length = 356 Back     alignment and structure
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus Horikoshii Ot3 Length = 351 Back     alignment and structure
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex With Substrate Length = 440 Back     alignment and structure
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli Length = 440 Back     alignment and structure
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli Length = 440 Back     alignment and structure
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form Length = 440 Back     alignment and structure
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga Maritima Msb8 Length = 359 Back     alignment and structure
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1) Length = 353 Back     alignment and structure
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 394 Back     alignment and structure
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1 Length = 401 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 1e-133
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 1e-124
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 1e-121
3mx6_A262 Methionine aminopeptidase; seattle structural geno 2e-92
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 3e-90
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 5e-83
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 2e-75
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 6e-75
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 2e-70
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 2e-47
2q8k_A 401 Proliferation-associated protein 2G4; EBP1, PA2G4, 6e-47
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 6e-39
2nw5_A 360 Methionine aminopeptidase 2; metap2, structural ge 4e-38
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 2e-25
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 7e-24
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 1e-22
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 3e-22
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 4e-22
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 4e-22
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 2e-21
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 2e-17
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 6e-05
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 1e-14
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 3e-14
3l24_A 517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 5e-12
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 1e-10
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 1e-10
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 2e-10
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 2e-10
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 2e-05
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 3e-05
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 7e-05
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 8e-05
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 9e-05
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Length = 368 Back     alignment and structure
 Score =  384 bits (989), Expect = e-133
 Identities = 108/280 (38%), Positives = 155/280 (55%), Gaps = 19/280 (6%)

Query: 24  LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCI 83
           +                      F+     H    +K  LS            + W Y  
Sbjct: 1   MHHHHHHSSGRE--------NLYFQGEKEDHLKTIVKKHLSPE---NFDPTNRKYWVY-- 47

Query: 84  KKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK 143
                      +F +TG +RP+P+S    VP++IE PD+A+   P+ E     +  + + 
Sbjct: 48  ---DDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVN 104

Query: 144 TPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPK 203
             ++I+R+RE C + R+ LD A  ++ PGVTTDEIDR VHE  I    YPS LNY+ FPK
Sbjct: 105 NEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPK 164

Query: 204 SCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA---SRQL 260
           SCCTSVNE++CHGIPD R L+ GDI+NID++V+YKGVH DLNETYFVG+ ++     ++L
Sbjct: 165 SCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKEL 224

Query: 261 VQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
           V+  Y  L +AI   KPG+ ++ IG +I+ + +   FSVV
Sbjct: 225 VETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVV 264
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Length = 329 Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A Length = 285 Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Length = 262 Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Length = 263 Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Length = 252 Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Length = 264 Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Length = 262 Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Length = 286 Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Length = 295 Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Length = 401 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Length = 351 Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Length = 356 Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Length = 356 Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Length = 378 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Length = 517 Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Length = 494 Back     alignment and structure
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Length = 451 Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Length = 440 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 100.0
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 100.0
4fuk_A337 Methionine aminopeptidase; structural genomics con 100.0
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 100.0
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 100.0
3mx6_A262 Methionine aminopeptidase; seattle structural geno 100.0
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 100.0
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 100.0
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 100.0
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 100.0
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 100.0
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 100.0
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 100.0
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 100.0
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 100.0
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 100.0
2q8k_A 401 Proliferation-associated protein 2G4; EBP1, PA2G4, 100.0
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 100.0
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 100.0
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 100.0
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 100.0
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 100.0
3fm3_A 358 Methionine aminopeptidase 2; metap2, structural ge 100.0
2nw5_A 360 Methionine aminopeptidase 2; metap2, structural ge 100.0
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 100.0
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 100.0
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 100.0
3l24_A 517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 100.0
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 100.0
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 100.0
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 100.0
3ctz_A623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 100.0
4b6a_t 614 Probable metalloprotease ARX1; large ribosomal sub 99.87
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 97.79
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 97.69
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 97.69
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 97.63
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 97.44
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 96.58
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 96.57
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 96.43
3fm3_A 358 Methionine aminopeptidase 2; metap2, structural ge 96.43
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 96.38
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 96.33
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 96.32
3mx6_A262 Methionine aminopeptidase; seattle structural geno 96.27
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 96.23
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 96.1
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 95.96
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 95.95
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 95.93
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 95.93
3qww_A433 SET and MYND domain-containing protein 2; methyltr 95.83
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 95.79
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 95.78
4fuk_A 337 Methionine aminopeptidase; structural genomics con 95.6
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 95.59
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 95.58
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 95.56
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 95.54
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 95.44
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 95.31
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 94.95
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 94.92
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 94.65
2nw5_A 360 Methionine aminopeptidase 2; metap2, structural ge 94.41
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 93.32
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 93.3
2q8k_A401 Proliferation-associated protein 2G4; EBP1, PA2G4, 92.87
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 92.6
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 91.63
3l24_A517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 91.4
3ctz_A623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 91.36
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 91.3
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 90.75
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
Probab=100.00  E-value=3.9e-62  Score=475.14  Aligned_cols=267  Identities=40%  Similarity=0.674  Sum_probs=250.2

Q ss_pred             CCccccccchhcccCCCCCCCCCCCCcCCCccccCCCCCcccCCcCCCcccccCCCCCcCCCCccccccccCCHHHHHHH
Q 018911           72 SSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM  151 (349)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~s~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~iKs~~EIe~~  151 (349)
                      .|+...+|.|     ++.+++||+|.|||+|||+++||++.||++|++|+|+.+|.|..+.......+|.|||++||+.|
T Consensus        38 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~i~~p~y~~~~~~~~~~~~~~~~~~~IKs~~EIe~m  112 (368)
T 3s6b_A           38 DPTNRKYWVY-----DDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRI  112 (368)
T ss_dssp             CTTCCGGGGG-----STTGGGGTTCCCSSSCCCCCCCCCCCCCTTSCCCTTTTTSCCHHHHSCCCTTCCCCCCHHHHHHH
T ss_pred             CCCCCccccc-----ccccCCCCCCCcCCcccccccCCCCCCCcCCCCCccccCCCChhhhhccccCCceeCCHHHHHHH
Confidence            3566778876     56789999999999999999999999999999999999998876654444568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEE
Q 018911          152 RETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI  231 (349)
Q Consensus       152 R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~i  231 (349)
                      |+|+++++++|+.+.+.++||+||.||++.+++++.++|++|++++|.+||+++|+|+|++++|++|++++|++||+|+|
T Consensus       113 R~A~~ia~~al~~~~~~ikpGvTE~El~~~~~~~~~~~Ga~ps~l~y~~Fp~iv~sg~N~~i~H~~p~~r~L~~GDiV~i  192 (368)
T 3s6b_A          113 REACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKSGDIINI  192 (368)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTCBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSEEEEETTEEECCCCCSCBCCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCCeEEEcCccccccCCCCCccccCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeceeCcEEeceeeeEEec---CCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccccccc
Q 018911          232 DVTVYYKGVHGDLNETYFVG---NADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAI  308 (349)
Q Consensus       232 D~g~~~~GY~~D~~RT~~vG---~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHGI  308 (349)
                      |+|++|+||++|++|||++|   ++++++++++++++++++++++++|||++++||+++++++++++||.++++++||||
T Consensus       193 D~G~~~~GY~sDitRT~~vGg~~~~s~e~~~ly~~v~ea~~aai~~ikPG~~~~dI~~aa~~~i~~~G~~~~~~~~GHGI  272 (368)
T 3s6b_A          193 DISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGV  272 (368)
T ss_dssp             EEEEEETTEEEEEEEEEECSCGGGSCHHHHHHHHHHHHHHHHHHHHCCTTCBTHHHHHHHHHHHHTTTCEECCSCCEEEC
T ss_pred             EEeEEECcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCcccceeeCCC
Confidence            99999999999999999999   899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911          309 VIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR  343 (349)
Q Consensus       309 G~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~  343 (349)
                      |+.+||.|.+.++.+++.+.+|++||||++||++.
T Consensus       273 G~~vHE~P~i~~~~~~~~~~~L~~GMVfTIEPgiy  307 (368)
T 3s6b_A          273 GKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMIN  307 (368)
T ss_dssp             SSSSSEEEEECSSSSCCCCCBCCTTCEEEECCEEE
T ss_pred             CccccCCCccccccCCCCCCEECCCCEEEEcCeEE
Confidence            99999999998765455678999999999998654
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei} Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Back     alignment and structure
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei} Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d2gg2a1262 d.127.1.1 (A:3-264) Methionine aminopeptidase {Esc 2e-38
d1o0xa_249 d.127.1.1 (A:) Methionine aminopeptidase {Thermoto 1e-28
d1pv9a2221 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal 6e-22
d1b6aa2295 d.127.1.1 (A:110-374,A:449-478) Methionine aminope 1e-21
d1qxya_249 d.127.1.1 (A:) Methionine aminopeptidase {Staphylo 2e-20
d1chma2246 d.127.1.1 (A:157-402) Creatinase, catalytic (C-ter 1e-18
d2v3za2264 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal 6e-18
d1xgsa2218 d.127.1.1 (A:1-194,A:272-295) Methionine aminopept 1e-15
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 3e-05
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 7e-05
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 8e-04
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Length = 262 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Methionine aminopeptidase
species: Escherichia coli [TaxId: 562]

 Score =  135 bits (341), Expect = 2e-38
 Identities = 75/205 (36%), Positives = 106/205 (51%), Gaps = 2/205 (0%)

Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
           + IKTP+ IE+MR   R+A EVL+     ++PGV+T E+DR+ ++  +      S    +
Sbjct: 1   ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 60

Query: 200 F-FPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
             +PKS C S+NEV+CHGIP D++ L+DGDIVNIDVTV   G HGD ++ + VG      
Sbjct: 61  HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 120

Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTED 317
            +L + T E L  A+ +VKPG+  REIG  I +     GFSVV       I    +    
Sbjct: 121 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 180

Query: 318 TKQCLVVSFSCFAKTGKIVLWSWYW 342
                    +   K G         
Sbjct: 181 VLHYDSRETNVVLKPGMTFTIEPMV 205
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Length = 249 Back     information, alignment and structure
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 221 Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Length = 249 Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Length = 246 Back     information, alignment and structure
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 218 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1o0xa_249 Methionine aminopeptidase {Thermotoga maritima [Ta 100.0
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 100.0
d1qxya_249 Methionine aminopeptidase {Staphylococcus aureus [ 100.0
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 100.0
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 100.0
d1xgsa2218 Methionine aminopeptidase {Archaeon Pyrococcus fur 100.0
d2v3za2264 Aminopeptidase P, C-terminal domain {Escherichia c 100.0
d1b6aa2295 Methionine aminopeptidase {Human (Homo sapiens) [T 100.0
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 98.5
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 98.32
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 98.24
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 97.15
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 96.4
d1xgsa2 218 Methionine aminopeptidase {Archaeon Pyrococcus fur 96.3
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 96.22
d1o0xa_249 Methionine aminopeptidase {Thermotoga maritima [Ta 95.29
d2v3za2 264 Aminopeptidase P, C-terminal domain {Escherichia c 95.24
d1b6aa2 295 Methionine aminopeptidase {Human (Homo sapiens) [T 95.21
d1qxya_249 Methionine aminopeptidase {Staphylococcus aureus [ 95.09
d1lv3a_65 Hypothetical zinc finger protein YacG {Escherichia 89.54
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 81.01
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Methionine aminopeptidase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.3e-43  Score=319.47  Aligned_cols=205  Identities=29%  Similarity=0.469  Sum_probs=191.1

Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCC
Q 018911          139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP  218 (349)
Q Consensus       139 ~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p  218 (349)
                      ||.||||+||++||+|+++++++++++.+.++||+||.||++.+++.+.+.|+.+.+.++..++.+++.+.++...|+.+
T Consensus         1 m~~IKs~~Ei~~mr~A~~ia~~~~~~~~~~i~~G~te~ev~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (249)
T d1o0xa_           1 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNEEVVHGLP   80 (249)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHGGGGCSTTCBHHHHHHHHHHHHHHHTCEESSTTGGGCCCSEEEEETTBCSCCCC
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHhhhhhhccccccccccccccCcccccceee
Confidence            68999999999999999999999999999999999999999999999999999988777777887888888888888765


Q ss_pred             -CCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC
Q 018911          219 -DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF  297 (349)
Q Consensus       219 -~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~  297 (349)
                       +++.+++||+|++|+++.++||++|++|||++|++++++++++++++++++++++.+|||++++||++++++++++.||
T Consensus        81 ~~~~~~~~gd~v~id~g~~~~gy~~D~~RT~~~G~~s~~~~~~~~~~~~a~~a~i~~~kpG~~~~dv~~~~~~~~~~~g~  160 (249)
T d1o0xa_          81 LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGF  160 (249)
T ss_dssp             CTTCBCCTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHTCCTTSBHHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccceeeecceeecceecccccceeecCcChhhHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence             5788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911          298 SVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR  343 (349)
Q Consensus       298 ~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~  343 (349)
                      ..+++++|||||+.+|+.|.+......+.+.+|+|||||++||++.
T Consensus       161 ~~~~~~~GHgiG~~~~~~p~~~~~~~~~~~~~le~gMv~~iEp~~~  206 (249)
T d1o0xa_         161 NVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVS  206 (249)
T ss_dssp             EECCSSCEEECSSSSSEEEEECSCCCTTCSCBCCTTCEEEECCEEE
T ss_pred             eeecCCcccccccCCCcCCccceeccCCCCccccCCeEEEecceee
Confidence            9889999999999999998876654556789999999999998654
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure