Citrus Sinensis ID: 018935

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTASSYRMQKQ
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHccccEEEEccccHHHHHccccEEEEEccccccccEEcccccEEEEEEEEccHHHHHHHHHHcccccEEEEEccccccccHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccccccEEEEEEEEEEEEEcccccEEEEEcccccccccEEEEEccccEEEEEEEcccccccccccccEEEccccEEEEEEcccccccEEccccccEEEEEcccccEEEEEEEEEEEEcccEEEEEEEEEEEEEccEEEEEEc
cHHHHHcccccccccccccccccccccccccccccEEEEccccccccccccEEEEEcccHHHHHHHHHccccEEEEcHHHHHHHHHHcccEEEccccccccccccccccEEEEEEccccHHHHHHHHHHHccccEEEEEcccccEccHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEcccccEEEEEccHccccccEEEEEccccEEEEEEcccccccccccccEEEccccEEEEEEccccccEEHHHcccccEEEEEEccccEEEEEEEEEEEEEccEEEEEEEEEEEEcccEEEEccc
MALLLSSsfvsstqlpfstfntdkwntgrvnknsYCFTMCsvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENqqlaidwstialldplfikegevydsgdrrvgsiievstpqelqqlqpadgqaenividlpdwqvipaenivasfqgsgktvfaISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLcslmrpgegllvGSFARGLFLVHseclesnyiasrpfrvnagpvhayvlvpggktcylselksgkevivvdqkgrqrtavvGRVKIESRPLILVEAKVIKLFTASSYRMQKQ
malllsssfvsstqlpfstfntdkwntgrvNKNSYCFTMCSvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSgkevivvdqkgrqrtavvgrvkiesrplilveAKVIKlftassyrmqkq
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCsvsnssssKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTASSYRMQKQ
**************LPFSTFNTDKWNTGRVNKNSYCFTMC************VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV***************AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTA********
*****************************************************WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE************SLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTASSYRMQK*
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSV*********RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTASSYRMQKQ
******SSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTASSYRMQ**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFTASSYRMQKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
O26680374 3-dehydroquinate synthase yes no 0.778 0.724 0.409 9e-57
Q2NI00359 3-dehydroquinate synthase yes no 0.807 0.782 0.382 2e-54
Q58646361 3-dehydroquinate synthase yes no 0.568 0.548 0.495 2e-53
A4G0J1361 3-dehydroquinate synthase yes no 0.563 0.542 0.489 3e-52
A0B6K6362 3-dehydroquinate synthase yes no 0.784 0.754 0.402 1e-51
A9A8T5361 3-dehydroquinate synthase yes no 0.563 0.542 0.484 2e-51
A5UJ82368 3-dehydroquinate synthase yes no 0.764 0.722 0.384 2e-51
Q12UJ7379 3-dehydroquinate synthase yes no 0.537 0.493 0.540 6e-51
Q6M1B0361 3-dehydroquinate synthase yes no 0.563 0.542 0.479 8e-51
A6VHZ4361 3-dehydroquinate synthase yes no 0.563 0.542 0.474 9e-51
>sp|O26680|DHQS_METTH 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2 Back     alignment and function desciption
 Score =  221 bits (562), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 184/310 (59%), Gaps = 39/310 (12%)

Query: 56  WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-------LFIKEGE------ 102
           W E K  +TAA+E G +  V  +++ ++      + L+ P       L  ++GE      
Sbjct: 13  WDEKKTFITAALESGIDHIVDTADSGRIK-KLGNLTLISPDEDADIVLVGRDGEGDGTLE 71

Query: 103 ----------------VYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVI 146
                           + +SG R+V + +E+ +    +  +      + +++   DW++I
Sbjct: 72  LPETLEYSRDIEMASELSESG-RQVAAYVEIRSKAHEELARRLGRVVDYLILVGEDWKII 130

Query: 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV---KAVLALKEYF 203
           P ENI+A  Q     + A      EA++ LE LE G  G++++  D+   K + AL E  
Sbjct: 131 PLENIIADLQEEDVKLIAAVADVDEARVALETLEHGTDGVLIEPADISQIKDIAALLENI 190

Query: 204 DGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECL 263
           +     S    L  AT+TR++  G GDRVCVD CS+M  GEG+LVGS+++GLFLVHSE L
Sbjct: 191 E-----SETYELKPATITRIEPIGSGDRVCVDTCSIMGIGEGMLVGSYSQGLFLVHSESL 245

Query: 264 ESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323
           ES Y+ASRPFRVNAGPV AYV+VPGG+T YLSEL++G EVI+VD+ GR R+A+VGRVKIE
Sbjct: 246 ESEYVASRPFRVNAGPVQAYVMVPGGRTRYLSELETGDEVIIVDRDGRSRSAIVGRVKIE 305

Query: 324 SRPLILVEAK 333
            RPL+LVEA+
Sbjct: 306 KRPLMLVEAE 315
Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3-dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis.
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q2NI00|DHQS_METST 3-dehydroquinate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0090 PE=3 SV=1 Back     alignment and function description
>sp|Q58646|DHQS_METJA 3-dehydroquinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1249 PE=1 SV=1 Back     alignment and function description
>sp|A4G0J1|DHQS_METM5 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1678 PE=3 SV=1 Back     alignment and function description
>sp|A0B6K6|DHQS_METTP 3-dehydroquinate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_0539 PE=3 SV=2 Back     alignment and function description
>sp|A9A8T5|DHQS_METM6 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0943 PE=3 SV=1 Back     alignment and function description
>sp|A5UJ82|DHQS_METS3 3-dehydroquinate synthase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0055 PE=3 SV=1 Back     alignment and function description
>sp|Q12UJ7|DHQS_METBU 3-dehydroquinate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2000 PE=3 SV=2 Back     alignment and function description
>sp|Q6M1B0|DHQS_METMP 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0006 PE=3 SV=1 Back     alignment and function description
>sp|A6VHZ4|DHQS_METM7 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_1003 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
224140959345 predicted protein [Populus trichocarpa] 0.818 0.826 0.8 1e-134
296082881 998 unnamed protein product [Vitis vinifera] 0.813 0.283 0.780 1e-132
359488897368 PREDICTED: 3-dehydroquinate synthase-lik 0.813 0.769 0.780 1e-131
255552890419 conserved hypothetical protein [Ricinus 0.954 0.792 0.655 1e-128
356572434442 PREDICTED: 3-dehydroquinate synthase-lik 0.928 0.730 0.679 1e-126
449459466423 PREDICTED: 3-dehydroquinate synthase-lik 0.813 0.669 0.752 1e-125
297818494426 hypothetical protein ARALYDRAFT_322953 [ 0.821 0.671 0.744 1e-124
79313976444 uncharacterized protein [Arabidopsis tha 0.821 0.644 0.741 1e-123
30689333422 uncharacterized protein [Arabidopsis tha 0.821 0.677 0.741 1e-123
11994783434 unnamed protein product [Arabidopsis tha 0.804 0.645 0.729 1e-118
>gi|224140959|ref|XP_002323844.1| predicted protein [Populus trichocarpa] gi|222866846|gb|EEF03977.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/285 (80%), Positives = 258/285 (90%)

Query: 49  KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
           K KRVWIWTESKQVMT AVERGWNTF+FLS ++QLAIDWS+ + ++PLFI+EGEV D  +
Sbjct: 1   KSKRVWIWTESKQVMTTAVERGWNTFIFLSNHRQLAIDWSSFSFINPLFIEEGEVLDGEN 60

Query: 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
           +RV +I EVSTPQELQQLQP +GQAEN++I+L DWQ+IPAENIVA+FQGS KTV AISKT
Sbjct: 61  KRVATIFEVSTPQELQQLQPENGQAENVIINLLDWQIIPAENIVAAFQGSQKTVLAISKT 120

Query: 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
            SEAQIFLEALE GLGG+VLKVEDV+AV+ LKEY D RNE +NLLSL KAT+TRV VAGM
Sbjct: 121 HSEAQIFLEALEHGLGGVVLKVEDVEAVIKLKEYCDRRNEATNLLSLTKATITRVQVAGM 180

Query: 229 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPG 288
           GDRVCVDLCSLM+PGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYV +PG
Sbjct: 181 GDRVCVDLCSLMKPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVSIPG 240

Query: 289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333
           G+TCYLSELK+G+EV V DQ G+ RTA+VGRVKIE+RPLILVEAK
Sbjct: 241 GRTCYLSELKAGEEVSVADQNGQLRTAIVGRVKIETRPLILVEAK 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082881|emb|CBI22182.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488897|ref|XP_002282990.2| PREDICTED: 3-dehydroquinate synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552890|ref|XP_002517488.1| conserved hypothetical protein [Ricinus communis] gi|223543499|gb|EEF45030.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356572434|ref|XP_003554373.1| PREDICTED: 3-dehydroquinate synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|449459466|ref|XP_004147467.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi|449520920|ref|XP_004167480.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297818494|ref|XP_002877130.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] gi|297322968|gb|EFH53389.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79313976|ref|NP_001030791.1| uncharacterized protein [Arabidopsis thaliana] gi|222424331|dbj|BAH20122.1| AT3G28760 [Arabidopsis thaliana] gi|332643967|gb|AEE77488.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30689333|ref|NP_189518.2| uncharacterized protein [Arabidopsis thaliana] gi|27754381|gb|AAO22639.1| unknown protein [Arabidopsis thaliana] gi|28973463|gb|AAO64056.1| unknown protein [Arabidopsis thaliana] gi|332643966|gb|AEE77487.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994783|dbj|BAB03173.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2098428444 AT3G28760 [Arabidopsis thalian 0.821 0.644 0.741 2e-111
TAIR|locus:2098428 AT3G28760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 212/286 (74%), Positives = 246/286 (86%)

Query:    49 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
             K K+VWIWT  K+VMT AVERGWNTF+F S+N++L+ +WS+IAL+D LFI+E +V D   
Sbjct:    91 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 150

Query:   109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
               V S+ EVSTP+EL+ L   + Q ENIV+D  DW+ IPAEN+VA+ QGS KTVFA+S T
Sbjct:   151 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 210

Query:   169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
             PSEA++FLEALE GLGGI+LK EDVKAVL LKEYFD RNE S+ LSL +AT+TRV + GM
Sbjct:   211 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 270

Query:   229 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPG 288
             GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYI SRPFRVNAGPVHAYV VPG
Sbjct:   271 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIESRPFRVNAGPVHAYVAVPG 330

Query:   289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKV 334
             GKTCYLSEL++G+EVIVVDQKG+QRTAVVGRVKIE RPLI+VEAK+
Sbjct:   331 GKTCYLSELRTGREVIVVDQKGKQRTAVVGRVKIEKRPLIVVEAKL 376


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      348       340   0.00095  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  223 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.29u 0.10s 26.39t   Elapsed:  00:00:03
  Total cpu time:  26.29u 0.10s 26.39t   Elapsed:  00:00:03
  Start:  Tue May 21 02:03:03 2013   End:  Tue May 21 02:03:06 2013
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.999.1
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
EPSPS
3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)
•     • 0.770
gw1.XIV.2747.1
hypothetical protein (337 aa)
•     • 0.708
gw1.VIII.57.1
annotation not avaliable (321 aa)
•     • 0.563
gw1.XVI.3177.1
hypothetical protein (66 aa)
•       0.501
PDTp
arogenate/prephenate dehydratase (EC-4.2.1.91) (302 aa)
•  •    0.480
fgenesh4_pg.C_scaffold_70000157
hypothetical protein (223 aa)
•    •  0.465
CS2
RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)
•       0.460
CS1
chorismate synthase (EC-4.2.3.5) (438 aa)
•       0.455
gw1.2627.7.1
Predicted protein (172 aa)
•       0.452

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
pfam01959347 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 1e-119
PRK02290344 PRK02290, PRK02290, 3-dehydroquinate synthase; Pro 1e-94
COG1465376 COG1465, COG1465, Predicted alternative 3-dehydroq 1e-82
>gnl|CDD|216810 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
 Score =  348 bits (896), Expect = e-119
 Identities = 132/291 (45%), Positives = 188/291 (64%), Gaps = 9/291 (3%)

Query: 51  KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWS--TIALLDPLFIKEGEV 103
           K+VW+     W E K+ +T A+E G +  +   E+ +   +    T+A      + + E 
Sbjct: 1   KKVWLKADGPWDERKERITTALESGVDAVLVDEEDVERVRELGRITVAADGTDDLPDLET 60

Query: 104 YDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF 163
                + VG+ +E+   ++ +    A  +A+ ++++  DW +IP EN++A  QGS   V 
Sbjct: 61  LKESGKDVGAYVEILDKEDEEFAAEAAKEADYVIVEGRDWTIIPLENLIARLQGSETKVI 120

Query: 164 AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223
           A+ ++  EA++ LE LE+G+ G++L  +D   + A+    + ++  S  L L+ ATVT V
Sbjct: 121 AVVRSAEEAKLALETLEKGVDGVLLDSDDPNEIKAIVAVVEEKSSES--LDLVPATVTEV 178

Query: 224 DVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAY 283
           +  GMGDRVCVD CSLM  GEG+LVGS +RG+FLVHSE LES Y+ASRPFRVNAG VHAY
Sbjct: 179 EPVGMGDRVCVDTCSLMEDGEGMLVGSSSRGMFLVHSETLESPYVASRPFRVNAGAVHAY 238

Query: 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKV 334
           V VPGGKT YLSELK+G EV+VVD  GR R A+VGRVKIE RPL+L+EA+ 
Sbjct: 239 VRVPGGKTRYLSELKAGDEVLVVDADGRTREAIVGRVKIERRPLLLIEAEY 289

6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyzes the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides. Length = 347
>gnl|CDD|235025 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|224382 COG1465, COG1465, Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
PF01959354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 100.0
PRK02290344 3-dehydroquinate synthase; Provisional 100.0
COG1465376 Predicted alternative 3-dehydroquinate synthase [A 100.0
PF01079 217 Hint: Hint module; InterPro: IPR001767 This domain 94.95
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 92.82
smart00306100 HintN Hint (Hedgehog/Intein) domain N-terminal reg 92.61
PRK05826465 pyruvate kinase; Provisional 91.64
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 91.5
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 90.39
PTZ00300454 pyruvate kinase; Provisional 89.99
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 89.77
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 89.52
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 89.32
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 89.29
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 89.13
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 88.96
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 88.9
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 88.81
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 88.25
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 87.45
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 87.17
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 86.87
PTZ00066513 pyruvate kinase; Provisional 86.84
PLN02591250 tryptophan synthase 86.63
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 86.27
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 85.85
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 84.77
PF02662124 FlpD: Methyl-viologen-reducing hydrogenase, delta 84.3
TIGR01370315 cysRS possible cysteinyl-tRNA synthetase, Methanoc 83.8
cd06220 233 DHOD_e_trans_like2 FAD/NAD binding domain in the e 83.55
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 83.46
PRK08345 289 cytochrome-c3 hydrogenase subunit gamma; Provision 82.87
PRK05826 465 pyruvate kinase; Provisional 82.27
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 81.93
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 81.92
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 81.62
PLN02762509 pyruvate kinase complex alpha subunit 81.6
PF0097099 FAD_binding_6: Oxidoreductase FAD-binding domain; 81.02
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 80.62
PLN02623581 pyruvate kinase 80.36
PRK06106281 nicotinate-nucleotide pyrophosphorylase; Provision 80.07
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
Probab=100.00  E-value=6.9e-111  Score=814.83  Aligned_cols=286  Identities=47%  Similarity=0.774  Sum_probs=271.0

Q ss_pred             cEEEE-----EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeee---cCCcc------ccCCCCeeEEEEE
Q 018935           51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE  116 (348)
Q Consensus        51 K~vWi-----w~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~---~~g~~------~~~~gk~v~~~~~  116 (348)
                      |++||     |+++|++||+|||+|||+|++++++.+++++|+++.++.+..-   +++..      ++..|+.++.+++
T Consensus         1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~   80 (354)
T PF01959_consen    1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE   80 (354)
T ss_pred             CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence            78999     8899999999999999999999999999999999999885332   22322      3577999999999


Q ss_pred             ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 018935          117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV  196 (348)
Q Consensus       117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v  196 (348)
                      |.++++++.++...+..+|+|++++||||||||||||++|+++++||+.|+|++||+++|++||+|+|||+|+|+|++++
T Consensus        81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei  160 (354)
T PF01959_consen   81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI  160 (354)
T ss_pred             ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence            99999999999888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee
Q 018935          197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN  276 (348)
Q Consensus       197 ~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN  276 (348)
                      ++++++++.+  ++++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||++||||++||||||
T Consensus       161 ~~~~~~~~~~--~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN  238 (354)
T PF01959_consen  161 KALVALLKER--SQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN  238 (354)
T ss_pred             HHHHHHHhhc--cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence            9999998642  66789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEEEECCEe
Q 018935          277 AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLF  338 (348)
Q Consensus       277 AGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeAe~~G~~  338 (348)
                      |||||||+++|||||+|||||+|||+||+||++|++|+++|||||||+||||||||+++|+.
T Consensus       239 AGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA~~~g~~  300 (354)
T PF01959_consen  239 AGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEAEADGKR  300 (354)
T ss_pred             cCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEEEeCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999874

6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH) Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) [] Back     alignment and domain information
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type Back     alignment and domain information
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 39/269 (14%), Positives = 79/269 (29%), Gaps = 107/269 (39%)

Query: 54  WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS 113
           ++ +    + T   +    T +++ +  +L   ++   +     +           R+  
Sbjct: 93  FLMS---PIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVS----------RLQP 136

Query: 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS------- 166
            +++   Q L +L+PA    +N++ID                 GSGKT  A+        
Sbjct: 137 YLKLR--QALLELRPA----KNVLID--------------GVLGSGKTWVALDVCLSYKV 176

Query: 167 KTPSEAQIF-------------LEALEQ--------------GLGGIVLKVEDVKAVLAL 199
           +   + +IF             LE L++                  I L++  ++A   L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--EL 234

Query: 200 KEYFDGRNEVSNLLSL--------MKA---------TVTR-------VDVAGMGDRVCVD 235
           +     +   + LL L          A         T TR       +  A         
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDH 293

Query: 236 LCSLMRPGEGLLVGSFARGLFLVHSECLE 264
               + P E          L     + L+
Sbjct: 294 HSMTLTPDEVK-------SLL---LKYLD 312

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
1at0_A145 17-hedgehog; developmental signaling molecule, cho 95.61
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 92.63
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 91.45
2in0_A139 Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter 91.44
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 90.28
3luf_A259 Two-component system response regulator/ggdef doma 89.34
1mi8_A158 DNAB intein; all beta-strands, hydrolase; 2.00A {S 89.2
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 89.07
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 89.07
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 88.6
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 88.5
1am2_A 199 MXE GYRA intein; protein splicing; 2.20A {Mycobact 88.25
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 86.63
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 86.1
3bo9_A326 Putative nitroalkan dioxygenase; TM0800, structura 85.79
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 85.46
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 84.02
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 84.0
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 83.76
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 83.63
3paj_A320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 83.57
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 82.83
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 82.14
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 81.22
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 81.18
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 81.0
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 80.99
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 80.63
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 80.48
1umk_A 275 B5R, NADH-cytochrome B5 reductase; flavoprotein, b 80.43
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 80.03
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Back     alignment and structure
Probab=95.61  E-value=0.029  Score=47.40  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=43.6

Q ss_pred             eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEE----eeeeEEeeccceeEEEEEECCEeeee
Q 018935          281 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTA----VVGRVKIESRPLILVEAKVIKLFTAS  341 (348)
Q Consensus       281 HaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~----~VGRvKIE~RPLlLIeAe~~G~~~~~  341 (348)
                      -+-|.+++|.++-++||+.||+||+.|.+|+....    ...|-.-..++++-|+.+.+-.+..+
T Consensus         5 ~t~V~~~~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~g~~L~lT   69 (145)
T 1at0_A            5 ESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVT   69 (145)
T ss_dssp             TCEEEBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETTSCEEEEC
T ss_pred             CCEEEeCCCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECCCCEEEEe
Confidence            35689999999999999999999999999985332    22333333467787877644455443
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2 Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 93.7
d1at0a_145 Hedgehog {Fruit fly (Drosophila melanogaster) [Tax 93.67
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 90.85
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 90.58
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 90.43
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 89.61
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 88.08
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 86.95
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 85.82
d1o4ua1170 Quinolinic acid phosphoribosyltransferase (Nicotin 85.41
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 82.08
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.061  Score=47.42  Aligned_cols=138  Identities=12%  Similarity=0.199  Sum_probs=88.4

Q ss_pred             cEEEEEe--CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecC-------------CccccCCCCeeEEE
Q 018935           51 KRVWIWT--ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE-------------GEVYDSGDRRVGSI  114 (348)
Q Consensus        51 K~vWiw~--~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~-------------g~~~~~~gk~v~~~  114 (348)
                      ...+|--  -+...+..||+.|+++|+||. ++++.+++.-+..+..|.-..+             .+.....+..+..+
T Consensus        67 ~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi  146 (253)
T d1dxea_          67 SAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITIL  146 (253)
T ss_dssp             SEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEE
T ss_pred             CCceecCCCCCHHHHHHHHhcCccEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEE
Confidence            3344533  578999999999999999995 5678888777777766622100             01112224566788


Q ss_pred             EEecChhhhhhhccccC--CCCeEEEe-------------CCCCeeee-hhhhhhcccCCCceEEEEcCCHHHHHHHHHH
Q 018935          115 IEVSTPQELQQLQPADG--QAENIVID-------------LPDWQVIP-AENIVASFQGSGKTVFAISKTPSEAQIFLEA  178 (348)
Q Consensus       115 ~~v~~~ed~e~~~~~~~--~~~~vvv~-------------~~DW~iIP-lENliA~~q~~~~~l~a~v~~~~eA~~al~~  178 (348)
                      +.|.+++-++.+-.-+.  ..|.+.+-             +.++++.- ++.++++..+.+...-..+.+.++++..   
T Consensus       147 ~~IEt~~av~nleeI~av~giD~i~iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~---  223 (253)
T d1dxea_         147 VQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRY---  223 (253)
T ss_dssp             EEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHH---
T ss_pred             eecccHHHHHHHHHHhccCCCceEEEecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHH---
Confidence            89999988887655443  56777772             12233332 2344555544444455567788888854   


Q ss_pred             hhcccCeEEEecC
Q 018935          179 LEQGLGGIVLKVE  191 (348)
Q Consensus       179 LE~G~DGVvl~~~  191 (348)
                      +++|.+-+++.+|
T Consensus       224 ~~~G~~~i~~g~D  236 (253)
T d1dxea_         224 LEWGATFVAVGSD  236 (253)
T ss_dssp             HHTTCCEEEEEEH
T ss_pred             HHcCCCEEEehHH
Confidence            6999997776665
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure